AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057039

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057039.t1 MTR_2g100250 83.654 208 5 1 4 182 225 432 5.95e-117 355
MS.gene057039.t1 MTR_2g100250 59.633 218 22 4 159 319 489 697 6.50e-70 231
MS.gene057039.t1 MTR_8g016160 65.366 205 37 2 7 182 232 431 5.59e-87 276
MS.gene057039.t1 MTR_8g016160 50.725 207 43 4 159 316 488 684 4.71e-55 191
MS.gene057039.t1 MTR_2g103730 43.172 227 88 4 4 189 250 476 2.84e-50 179
MS.gene057039.t1 MTR_2g103730 33.498 203 79 6 170 316 546 748 4.17e-24 103
MS.gene057039.t1 MTR_3g107360 43.119 218 84 3 5 182 261 478 2.41e-47 170
MS.gene057039.t1 MTR_3g107360 41.129 124 63 4 199 316 642 761 4.03e-20 91.7
MS.gene057039.t1 MTR_3g107320 42.601 223 85 6 5 184 262 484 2.12e-45 165
MS.gene057039.t1 MTR_3g107320 42.453 106 56 3 205 308 654 756 1.99e-17 83.6
MS.gene057039.t1 MTR_4g010650 41.256 223 91 4 7 189 253 475 7.69e-45 163
MS.gene057039.t1 MTR_4g010650 52.381 84 39 1 233 316 665 747 4.41e-23 100
MS.gene057039.t1 MTR_8g033080 41.989 181 66 5 3 146 481 659 2.20e-35 136
MS.gene057039.t1 MTR_8g033080 42.697 178 63 5 4 144 482 657 2.58e-35 136
MS.gene057039.t1 MTR_8g033080 36.634 202 66 4 176 315 788 989 1.55e-29 119
MS.gene057039.t1 MTR_3g114840 40.678 177 66 4 5 144 275 449 3.68e-35 135
MS.gene057039.t1 MTR_3g114840 48.611 72 28 1 158 229 583 645 1.27e-14 75.1
MS.gene057039.t1 MTR_7g075910 43.575 179 62 5 3 144 547 723 4.52e-35 135
MS.gene057039.t1 MTR_7g075910 35.349 215 73 4 176 326 853 1065 9.61e-31 123
MS.gene057039.t1 MTR_3g114840 40.678 177 66 4 5 144 275 449 4.97e-35 135
MS.gene057039.t1 MTR_3g114840 52.326 86 36 2 233 315 708 791 4.89e-21 94.4
MS.gene057039.t1 MTR_3g114840 48.611 72 28 1 158 229 583 645 1.51e-14 75.1
MS.gene057039.t1 MTR_5g023050 41.243 177 66 5 4 144 287 461 2.12e-34 133
MS.gene057039.t1 MTR_5g023050 31.556 225 87 5 158 326 609 822 1.26e-25 107
MS.gene057039.t1 MTR_8g088690 40.782 179 66 4 4 144 267 443 2.39e-33 130
MS.gene057039.t1 MTR_8g088690 34.483 203 69 5 176 316 583 783 8.53e-26 108
MS.gene057039.t1 MTR_5g011050 39.560 182 71 5 7 151 291 470 3.70e-31 124
MS.gene057039.t1 MTR_5g011050 54.762 84 37 1 233 315 711 794 9.63e-23 99.4
MS.gene057039.t1 MTR_5g011050 51.351 74 27 1 159 232 586 650 1.35e-14 75.1
MS.gene057039.t1 MTR_5g011060 34.934 229 96 7 7 184 285 511 4.81e-31 124
MS.gene057039.t1 MTR_5g011060 53.571 84 38 1 233 315 705 788 5.26e-22 97.4
MS.gene057039.t1 MTR_5g011060 50.000 74 28 1 159 232 580 644 7.18e-14 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057039.t1 AT1G55180 52.586 232 76 3 5 209 213 437 1.73e-74 243
MS.gene057039.t1 AT1G55180 38.356 219 59 6 159 316 477 680 1.61e-32 128
MS.gene057039.t1 AT1G55180 52.586 232 76 3 5 209 235 459 3.80e-74 243
MS.gene057039.t1 AT1G55180 38.356 219 59 6 159 316 499 702 1.76e-32 127
MS.gene057039.t1 AT1G52570 40.639 219 90 5 4 182 251 469 2.30e-43 159
MS.gene057039.t1 AT1G52570 55.952 84 36 1 233 316 667 749 1.20e-24 105
MS.gene057039.t1 AT1G52570 40.639 219 90 5 4 182 251 469 2.30e-43 159
MS.gene057039.t1 AT1G52570 55.952 84 36 1 233 316 667 749 1.20e-24 105
MS.gene057039.t1 AT1G52570 40.639 219 90 5 4 182 251 469 2.30e-43 159
MS.gene057039.t1 AT1G52570 55.952 84 36 1 233 316 667 749 1.20e-24 105
MS.gene057039.t1 AT3G15730 39.545 220 92 4 4 182 251 470 5.00e-43 158
MS.gene057039.t1 AT3G15730 58.333 84 34 1 233 316 667 749 1.67e-25 107
MS.gene057039.t1 AT5G25370 43.602 211 79 4 12 182 266 476 3.99e-42 155
MS.gene057039.t1 AT5G25370 48.235 85 43 1 233 316 673 757 1.85e-16 80.9
MS.gene057039.t1 AT5G25370 43.602 211 79 4 12 182 266 476 3.99e-42 155
MS.gene057039.t1 AT5G25370 48.235 85 43 1 233 316 673 757 1.85e-16 80.9
MS.gene057039.t1 AT5G25370 43.602 211 79 4 12 182 266 476 3.99e-42 155
MS.gene057039.t1 AT5G25370 48.235 85 43 1 233 316 673 757 1.85e-16 80.9
MS.gene057039.t1 AT5G25370 43.602 211 79 4 12 182 191 401 4.24e-42 155
MS.gene057039.t1 AT5G25370 47.674 86 44 1 233 317 598 683 1.81e-16 80.9
MS.gene057039.t1 AT4G11830 39.224 232 87 8 4 184 284 512 1.01e-37 142
MS.gene057039.t1 AT4G11830 39.224 232 87 8 4 184 284 512 1.07e-37 142
MS.gene057039.t1 AT4G11830 45.312 64 26 1 158 221 580 634 1.65e-11 65.5
MS.gene057039.t1 AT4G11830 39.224 232 87 8 4 184 252 480 1.30e-37 142
MS.gene057039.t1 AT4G11830 55.696 79 34 1 233 310 681 759 3.17e-20 92.0
MS.gene057039.t1 AT4G11830 50.685 73 27 1 159 231 549 612 1.28e-16 81.3
MS.gene057039.t1 AT4G11830 39.224 232 87 8 4 184 284 512 1.36e-37 142
MS.gene057039.t1 AT4G11830 55.696 79 34 1 233 310 713 791 3.22e-20 92.0
MS.gene057039.t1 AT4G11830 50.685 73 27 1 159 231 581 644 1.29e-16 81.3
MS.gene057039.t1 AT4G11850 38.627 233 88 8 4 184 286 515 7.75e-37 140
MS.gene057039.t1 AT4G11850 55.696 79 34 1 233 310 715 793 2.85e-20 92.0
MS.gene057039.t1 AT4G11850 50.685 73 27 1 159 231 584 647 5.68e-17 82.4
MS.gene057039.t1 AT4G11840 37.391 230 89 7 7 184 296 522 9.94e-36 137
MS.gene057039.t1 AT4G11840 52.381 84 39 1 233 315 723 806 3.58e-20 92.0
MS.gene057039.t1 AT4G11840 48.235 85 32 2 147 231 582 654 6.02e-17 82.0
MS.gene057039.t1 AT4G11840 37.391 230 89 7 7 184 266 492 1.07e-35 137
MS.gene057039.t1 AT4G11840 52.381 84 39 1 233 315 693 776 3.16e-20 92.0
MS.gene057039.t1 AT4G11840 48.235 85 32 2 147 231 552 624 5.78e-17 82.4
MS.gene057039.t1 AT2G42010 37.069 232 93 7 4 184 517 746 1.68e-35 137
MS.gene057039.t1 AT2G42010 42.105 114 63 2 214 326 948 1059 1.31e-22 99.4
MS.gene057039.t1 AT2G42010 52.632 57 27 0 176 232 823 879 1.13e-13 72.4
MS.gene057039.t1 AT2G42010 37.069 232 93 7 4 184 517 746 1.96e-35 136
MS.gene057039.t1 AT2G42010 42.105 114 63 2 214 326 923 1034 1.31e-22 99.4
MS.gene057039.t1 AT2G42010 52.632 57 27 0 176 232 823 879 1.02e-13 72.4
MS.gene057039.t1 AT4G35790 36.449 214 70 5 158 316 595 797 1.38e-34 134
MS.gene057039.t1 AT4G35790 41.573 178 66 5 3 144 278 453 5.07e-34 132
MS.gene057039.t1 AT4G35790 36.449 214 70 5 158 316 606 808 1.39e-34 134
MS.gene057039.t1 AT4G35790 39.153 189 66 5 3 144 278 464 1.25e-32 128
MS.gene057039.t1 AT4G35790 41.573 178 66 5 3 144 278 453 5.08e-34 132
MS.gene057039.t1 AT4G35790 48.611 72 28 1 158 229 595 657 9.03e-16 78.6
MS.gene057039.t1 AT4G00240 40.449 178 67 4 4 144 209 384 1.45e-31 125
MS.gene057039.t1 AT4G00240 30.137 219 83 7 159 316 507 716 3.15e-20 92.0
MS.gene057039.t1 AT4G00240 40.449 178 67 4 4 144 326 501 1.84e-31 125
MS.gene057039.t1 AT4G00240 30.137 219 83 7 159 316 624 833 4.36e-20 91.7
MS.gene057039.t1 AT4G00240 40.449 178 67 4 4 144 361 536 2.19e-31 125
MS.gene057039.t1 AT4G00240 30.137 219 83 7 159 316 659 868 4.58e-20 91.7

Find 66 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACCTTTGTTCTTGATAAA+TGG 0.146812 2.3:-3374143 None:intergenic
TCTTGAACTGGTTCACTTTC+AGG 0.161180 2.3:-3374947 None:intergenic
TGCACACATTCTAAACTTTC+TGG 0.177165 2.3:-3375929 None:intergenic
GTGAATGTCACCTTTGCTTA+TGG 0.212678 2.3:-3375846 None:intergenic
TTCCTCAACAAGCACTTCTA+TGG 0.258809 2.3:+3374621 MS.gene057039:CDS
TCACTTTCAGGCACTCCTTC+TGG 0.260249 2.3:-3374935 None:intergenic
GATGCTCATGCTTGTGTTAC+TGG 0.268529 2.3:+3374493 MS.gene057039:CDS
TTTGCCCGTCCATCGATCTT+TGG 0.295154 2.3:-3375766 None:intergenic
TGGCTGTAAGGGTTATGATT+TGG 0.320459 2.3:+3374102 MS.gene057039:CDS
GGCTGTAAGGGTTATGATTT+GGG 0.332421 2.3:+3374103 MS.gene057039:CDS
GTGTTACTGGCGAGGCGGCT+TGG 0.335844 2.3:+3374506 MS.gene057039:CDS
TGTTACTGGCGAGGCGGCTT+GGG 0.360313 2.3:+3374507 MS.gene057039:CDS
TCTCTGTCATTGACAGAGTT+AGG 0.362506 2.3:-3374305 None:intergenic
AGCTTTGGTATCCACGGTTA+TGG 0.372953 2.3:-3374282 None:intergenic
ATTGACAGAGTTAGGAGCTT+TGG 0.373133 2.3:-3374297 None:intergenic
GCACTTCTATGGAAAGGAAT+TGG 0.375461 2.3:+3374632 MS.gene057039:CDS
GAAGTGCTTGTTGAGGAAAT+AGG 0.378292 2.3:-3374616 None:intergenic
GATGACCTATATATACTAAT+AGG 0.379557 2.3:+3375728 MS.gene057039:CDS
GCATCATGCCATGGCTCTCT+TGG 0.387236 2.3:-3374475 None:intergenic
TGAATGTCACCTTTGCTTAT+GGG 0.394279 2.3:-3375845 None:intergenic
CAACTCCATCTTGATGAAAC+TGG 0.398815 2.3:-3375817 None:intergenic
TGATGATGAGCAAAGATTGT+AGG 0.400183 2.3:-3374254 None:intergenic
GGGAATTTGTCATGTAATCT+AGG 0.401511 2.3:-3374233 None:intergenic
CAGAAGAAGGAGTGGCTGTA+AGG 0.414409 2.3:+3374090 MS.gene057039:CDS
GATGATGAGCAAAGATTGTA+GGG 0.448753 2.3:-3374253 None:intergenic
CTGATCCTATTAGTATATAT+AGG 0.457591 2.3:-3375733 None:intergenic
CAATGCAGTATATCTTGAAC+TGG 0.467818 2.3:-3374959 None:intergenic
GTGCAGAGAATGTGCTCAAT+AGG 0.473934 2.3:+3375947 MS.gene057039:CDS
ACAAGATTAAAGCAAGAGAA+AGG 0.477212 2.3:+3374882 MS.gene057039:CDS
ACAATGATGTATAAGTTGAT+TGG 0.489344 2.3:+3374998 MS.gene057039:CDS
CTCTTGGACCTCCTTTGTTG+AGG 0.496416 2.3:-3374459 None:intergenic
CATGCTAGAGGAAATAAAGT+TGG 0.496426 2.3:+3374046 None:intergenic
GGCACTCCTTCTGGCCACAT+TGG 0.503394 2.3:-3374926 None:intergenic
AAGATCGATGGACGGGCAAA+GGG 0.511045 2.3:+3375769 MS.gene057039:CDS
GGCTACCAGTTTCATCAAGA+TGG 0.515157 2.3:+3375812 MS.gene057039:CDS
AAAGATCGATGGACGGGCAA+AGG 0.521722 2.3:+3375768 MS.gene057039:CDS
ATGCTAGAGGAAATAAAGTT+GGG 0.521766 2.3:+3374047 MS.gene057039:CDS
AGAAGAAGGAGTGGCTGTAA+GGG 0.531289 2.3:+3374091 MS.gene057039:CDS
GGTGGTTTCGATTTGTGCGA+CGG 0.546313 2.3:+3374344 MS.gene057039:CDS
TGAACCAAAGATCGATGGAC+GGG 0.560632 2.3:+3375762 MS.gene057039:CDS
TTTCCATTTATCAAGAACAA+AGG 0.570612 2.3:+3374140 MS.gene057039:CDS
CAACAAGCACTTCTATGGAA+AGG 0.578353 2.3:+3374626 MS.gene057039:CDS
GTCATACCAATGTGGCCAGA+AGG 0.580529 2.3:+3374920 MS.gene057039:CDS
GGAGAAGCAATCATAGAAAG+TGG 0.580963 2.3:+3375019 MS.gene057039:CDS
GTTAGGAGCTTTGGTATCCA+CGG 0.582477 2.3:-3374288 None:intergenic
TTCCATAGAAGTGCTTGTTG+AGG 0.590769 2.3:-3374623 None:intergenic
AAAGAAAGCAGAAGAAGGAG+TGG 0.610818 2.3:+3374082 MS.gene057039:CDS
ACAGAAATCCCACATGCTAG+AGG 0.620413 2.3:+3374034 None:intergenic
ACACAAAAGTAGTATGCAGA+AGG 0.623210 2.3:+3374207 MS.gene057039:CDS
GTGAACCAAAGATCGATGGA+CGG 0.630105 2.3:+3375761 MS.gene057039:CDS
CAAGCATGAGCATCATGCCA+TGG 0.632322 2.3:-3374484 None:intergenic
CAGTTCAAGATATACTGCAT+TGG 0.636717 2.3:+3374960 MS.gene057039:CDS
GTTGATCATCCCATAAGCAA+AGG 0.638827 2.3:+3375836 MS.gene057039:CDS
AGGGACACAGAAATTGCGAT+CGG 0.641781 2.3:+3375788 MS.gene057039:CDS
AAATGTGAACCAAAGATCGA+TGG 0.642298 2.3:+3375757 MS.gene057039:CDS
AAGGAGGTCCAAGAGAGCCA+TGG 0.649131 2.3:+3374467 MS.gene057039:CDS
TCATGCTTGTGTTACTGGCG+AGG 0.655164 2.3:+3374498 MS.gene057039:CDS
GACACAGAAATTGCGATCGG+AGG 0.656668 2.3:+3375791 MS.gene057039:CDS
GGGGCTAGCCTCAACAAAGG+AGG 0.660504 2.3:+3374451 MS.gene057039:intron
TGCTTGTGTTACTGGCGAGG+CGG 0.660654 2.3:+3374501 MS.gene057039:CDS
GCAGGGGCTAGCCTCAACAA+AGG 0.667195 2.3:+3374448 MS.gene057039:intron
TGCTCAATAGGAGATAAATG+TGG 0.667808 2.3:+3375959 MS.gene057039:CDS
TGTGATGAACACACATGACG+AGG 0.674406 2.3:+3374163 MS.gene057039:CDS
TGTATATAGTCATACCAATG+TGG 0.699010 2.3:+3374912 MS.gene057039:CDS
ACGAATACAGAATGTCAATG+TGG 0.720257 2.3:+3375867 MS.gene057039:CDS
TCAATGTGGTATGAACACAC+TGG 0.796931 2.3:+3375881 MS.gene057039:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAACCATAAATATATGT+TGG + chr2.3:3375217-3375236 MS.gene057039:intron 15.0%
!! ATTTAACCAACATATATTTA+TGG - chr2.3:3375226-3375245 None:intergenic 15.0%
!! AAATAATTGGATTTAAAAGG+AGG + chr2.3:3375455-3375474 MS.gene057039:intron 20.0%
!! AATAATTGGATTTAAAAGGA+GGG + chr2.3:3375456-3375475 MS.gene057039:intron 20.0%
!! ACCAAATAATTGGATTTAAA+AGG + chr2.3:3375452-3375471 MS.gene057039:intron 20.0%
!! AGTTGTTGAACATATATATA+TGG - chr2.3:3375531-3375550 None:intergenic 20.0%
!! ATTGAAAACCAATATTTCAT+TGG + chr2.3:3374780-3374799 MS.gene057039:intron 20.0%
!! TTCCAATACAAAAACTTAAT+AGG + chr2.3:3375592-3375611 MS.gene057039:intron 20.0%
!!! ATTAAGTTTTTGTATTGGAA+AGG - chr2.3:3375592-3375611 None:intergenic 20.0%
!!! TCCTTTTAAATCCAATTATT+TGG - chr2.3:3375456-3375475 None:intergenic 20.0%
! AAAACCAATATTTCATTGGA+GGG + chr2.3:3374784-3374803 MS.gene057039:intron 25.0%
! ACAGAAAAATAGAAGATTCA+TGG + chr2.3:3375162-3375181 MS.gene057039:intron 25.0%
! AGAAAATTCAAGTAATCTCT+CGG - chr2.3:3375058-3375077 None:intergenic 25.0%
! ATATATATATGGCTTGATCA+TGG - chr2.3:3375520-3375539 None:intergenic 25.0%
! CCAAGTGAATTTATAATACT+AGG + chr2.3:3375364-3375383 MS.gene057039:intron 25.0%
! CCTAGTATTATAAATTCACT+TGG - chr2.3:3375367-3375386 None:intergenic 25.0%
! CTGATCCTATTAGTATATAT+AGG - chr2.3:3375736-3375755 None:intergenic 25.0%
! GATGACCTATATATACTAAT+AGG + chr2.3:3375728-3375747 MS.gene057039:CDS 25.0%
! TTCAAACAATGAATGTTTCT+CGG - chr2.3:3374381-3374400 None:intergenic 25.0%
! TTTCCATTTATCAAGAACAA+AGG + chr2.3:3374140-3374159 MS.gene057039:CDS 25.0%
!! AATAGGAATGAGATTTTCTA+AGG - chr2.3:3374602-3374621 None:intergenic 25.0%
!! AGAGAAATTATGAGCTTTTT+GGG + chr2.3:3374323-3374342 MS.gene057039:CDS 25.0%
!! CTCCTATTAAGTTTTTGTAT+TGG - chr2.3:3375597-3375616 None:intergenic 25.0%
!! TAGCTAATTTTGAACAAAGA+TGG + chr2.3:3374536-3374555 MS.gene057039:CDS 25.0%
!!! ACAATGATGTATAAGTTGAT+TGG + chr2.3:3374998-3375017 MS.gene057039:CDS 25.0%
!!! GACAATTTTTTTTATTGACG+TGG - chr2.3:3375397-3375416 None:intergenic 25.0%
ACAAGATTAAAGCAAGAGAA+AGG + chr2.3:3374882-3374901 MS.gene057039:CDS 30.0%
ACACCTTTGTTCTTGATAAA+TGG - chr2.3:3374146-3374165 None:intergenic 30.0%
AGTTAAACCTAGATCATGAA+TGG - chr2.3:3375673-3375692 None:intergenic 30.0%
ATGCTAGAGGAAATAAAGTT+GGG + chr2.3:3374047-3374066 MS.gene057039:CDS 30.0%
GAAAACCAATATTTCATTGG+AGG + chr2.3:3374783-3374802 MS.gene057039:intron 30.0%
TAGATCCAAAATACGAGTAA+GGG + chr2.3:3375429-3375448 MS.gene057039:intron 30.0%
TATTTGTCTGGTAGAAATCA+TGG - chr2.3:3374426-3374445 None:intergenic 30.0%
TGTATATAGTCATACCAATG+TGG + chr2.3:3374912-3374931 MS.gene057039:CDS 30.0%
TTAGATCCAAAATACGAGTA+AGG + chr2.3:3375428-3375447 MS.gene057039:intron 30.0%
TTCAATGTACACAAACCTAT+CGG - chr2.3:3374766-3374785 None:intergenic 30.0%
TTGAAAAAGAAAGCAGAAGA+AGG + chr2.3:3374077-3374096 MS.gene057039:CDS 30.0%
! AATTGGAAAGTGCAAGTATA+CGG + chr2.3:3374649-3374668 MS.gene057039:intron 30.0%
! AGACTTTTGTACACAAAAGT+GGG + chr2.3:3375290-3375309 MS.gene057039:intron 30.0%
! CAGAGAAATTATGAGCTTTT+TGG + chr2.3:3374322-3374341 MS.gene057039:CDS 30.0%
! TAGACTTTTGTACACAAAAG+TGG + chr2.3:3375289-3375308 MS.gene057039:intron 30.0%
! TTTCTTTTGCCTTGCAAATA+GGG + chr2.3:3375073-3375092 MS.gene057039:intron 30.0%
! TTTTCTTTTGCCTTGCAAAT+AGG + chr2.3:3375072-3375091 MS.gene057039:intron 30.0%
!! TGTTGGTTAAATTGCAGTTT+TGG + chr2.3:3375234-3375253 MS.gene057039:intron 30.0%
AAATGTGAACCAAAGATCGA+TGG + chr2.3:3375757-3375776 MS.gene057039:CDS 35.0%
AAGTCTACAAATTTCGTGAG+CGG - chr2.3:3375276-3375295 None:intergenic 35.0%
ACACAAAAGTAGTATGCAGA+AGG + chr2.3:3374207-3374226 MS.gene057039:CDS 35.0%
ACGAATACAGAATGTCAATG+TGG + chr2.3:3375867-3375886 MS.gene057039:CDS 35.0%
AGTATATATAGGTCATCCAC+TGG - chr2.3:3375725-3375744 None:intergenic 35.0%
CAATGCAGTATATCTTGAAC+TGG - chr2.3:3374962-3374981 None:intergenic 35.0%
CAGTTCAAGATATACTGCAT+TGG + chr2.3:3374960-3374979 MS.gene057039:CDS 35.0%
GAAAACACCATTCATGATCT+AGG + chr2.3:3375663-3375682 MS.gene057039:intron 35.0%
GATGATGAGCAAAGATTGTA+GGG - chr2.3:3374256-3374275 None:intergenic 35.0%
GGGAATTTGTCATGTAATCT+AGG - chr2.3:3374236-3374255 None:intergenic 35.0%
TAGGGAAAAGAAGGAAAATG+AGG + chr2.3:3375091-3375110 MS.gene057039:intron 35.0%
TCATCAAAAAACCATAACCG+TGG + chr2.3:3374271-3374290 MS.gene057039:CDS 35.0%
TCTACCAGACAAATATTGCA+GGG + chr2.3:3374431-3374450 MS.gene057039:intron 35.0%
TCTTATCTTTCTGCCACAAA+TGG - chr2.3:3374812-3374831 None:intergenic 35.0%
TGAATGTCACCTTTGCTTAT+GGG - chr2.3:3375848-3375867 None:intergenic 35.0%
TGCACACATTCTAAACTTTC+TGG - chr2.3:3375932-3375951 None:intergenic 35.0%
TGCTCAATAGGAGATAAATG+TGG + chr2.3:3375959-3375978 MS.gene057039:CDS 35.0%
TTCTACCAGACAAATATTGC+AGG + chr2.3:3374430-3374449 MS.gene057039:intron 35.0%
! ATATGGCTTGATCATGGTTT+TGG - chr2.3:3375514-3375533 None:intergenic 35.0%
! TGATGATGAGCAAAGATTGT+AGG - chr2.3:3374257-3374276 None:intergenic 35.0%
!! CTGTTAGCTTTCTAAACAGT+TGG - chr2.3:3374698-3374717 None:intergenic 35.0%
!! GAAATTATGAGCTTTTTGGG+TGG + chr2.3:3374326-3374345 MS.gene057039:CDS 35.0%
!!! AGATTTTCTAAGGTGTTTGC+AGG - chr2.3:3374592-3374611 None:intergenic 35.0%
!!! GATTTTCTAAGGTGTTTGCA+GGG - chr2.3:3374591-3374610 None:intergenic 35.0%
AAAGAAAGCAGAAGAAGGAG+TGG + chr2.3:3374082-3374101 MS.gene057039:CDS 40.0%
AAGCTTACGTCGAAGCAATA+AGG + chr2.3:3374736-3374755 MS.gene057039:intron 40.0%
AATCATACCTATCACGAGCT+TGG - chr2.3:3375200-3375219 None:intergenic 40.0%
ATTGACAGAGTTAGGAGCTT+TGG - chr2.3:3374300-3374319 None:intergenic 40.0%
CAACAAGCACTTCTATGGAA+AGG + chr2.3:3374626-3374645 MS.gene057039:CDS 40.0%
CAACTCCATCTTGATGAAAC+TGG - chr2.3:3375820-3375839 None:intergenic 40.0%
CCTTGCAAATAGGGAAAAGA+AGG + chr2.3:3375082-3375101 MS.gene057039:intron 40.0%
CGAGTAAGGGACCAAATAAT+TGG + chr2.3:3375442-3375461 MS.gene057039:intron 40.0%
CTACCAGACAAATATTGCAG+GGG + chr2.3:3374432-3374451 MS.gene057039:intron 40.0%
CTCTTCCTGATACTCAATAC+TGG + chr2.3:3375134-3375153 MS.gene057039:intron 40.0%
GCACTTCTATGGAAAGGAAT+TGG + chr2.3:3374632-3374651 MS.gene057039:CDS 40.0%
GGAGAAGCAATCATAGAAAG+TGG + chr2.3:3375019-3375038 MS.gene057039:CDS 40.0%
GGCTGTAAGGGTTATGATTT+GGG + chr2.3:3374103-3374122 MS.gene057039:CDS 40.0%
GTGAATGTCACCTTTGCTTA+TGG - chr2.3:3375849-3375868 None:intergenic 40.0%
GTTGATCATCCCATAAGCAA+AGG + chr2.3:3375836-3375855 MS.gene057039:CDS 40.0%
TCAATGTGGTATGAACACAC+TGG + chr2.3:3375881-3375900 MS.gene057039:CDS 40.0%
TCTCTGTCATTGACAGAGTT+AGG - chr2.3:3374308-3374327 None:intergenic 40.0%
TGGCAGAAAGATAAGAACAG+TGG + chr2.3:3374816-3374835 MS.gene057039:intron 40.0%
TGGCTGTAAGGGTTATGATT+TGG + chr2.3:3374102-3374121 MS.gene057039:CDS 40.0%
TTCCTATTGAGATTGCACTC+AGG + chr2.3:3374853-3374872 MS.gene057039:intron 40.0%
TTCCTCAACAAGCACTTCTA+TGG + chr2.3:3374621-3374640 MS.gene057039:CDS 40.0%
TTGGATGATTCTACATCAGC+AGG - chr2.3:3375348-3375367 None:intergenic 40.0%
TTGTACACAAAAGTGGGACA+TGG + chr2.3:3375296-3375315 MS.gene057039:intron 40.0%
! CAGTATTGAGTATCAGGAAG+AGG - chr2.3:3375136-3375155 None:intergenic 40.0%
! CATTGTTTGAACACTTGCTG+AGG + chr2.3:3374390-3374409 MS.gene057039:intron 40.0%
! CCTTCTTTTCCCTATTTGCA+AGG - chr2.3:3375085-3375104 None:intergenic 40.0%
! GAAGTGCTTGTTGAGGAAAT+AGG - chr2.3:3374619-3374638 None:intergenic 40.0%
! TCTTGAACTGGTTCACTTTC+AGG - chr2.3:3374950-3374969 None:intergenic 40.0%
! TTGGTCCCTTACTCGTATTT+TGG - chr2.3:3375437-3375456 None:intergenic 40.0%
!! TTCCATAGAAGTGCTTGTTG+AGG - chr2.3:3374626-3374645 None:intergenic 40.0%
!!! TTTTTTGTTCCTTGCACCAG+TGG + chr2.3:3375706-3375725 MS.gene057039:intron 40.0%
AAGTAATCTCTCGGATGTCC+TGG - chr2.3:3375049-3375068 None:intergenic 45.0%
AGAAGAAGGAGTGGCTGTAA+GGG + chr2.3:3374091-3374110 MS.gene057039:CDS 45.0%
AGGGACACAGAAATTGCGAT+CGG + chr2.3:3375788-3375807 MS.gene057039:CDS 45.0%
AGTATCAGGAAGAGGAGATG+TGG - chr2.3:3375128-3375147 None:intergenic 45.0%
ATCATAGAAAGTGGTGAGCC+AGG + chr2.3:3375028-3375047 MS.gene057039:intron 45.0%
CACCTGAGTGCAATCTCAAT+AGG - chr2.3:3374858-3374877 None:intergenic 45.0%
CTATTGAGATTGCACTCAGG+TGG + chr2.3:3374856-3374875 MS.gene057039:intron 45.0%
GATGCTCATGCTTGTGTTAC+TGG + chr2.3:3374493-3374512 MS.gene057039:CDS 45.0%
GGCACCCTCCAATGAAATAT+TGG - chr2.3:3374791-3374810 None:intergenic 45.0%
GGCTACCAGTTTCATCAAGA+TGG + chr2.3:3375812-3375831 MS.gene057039:CDS 45.0%
GTGAACCAAAGATCGATGGA+CGG + chr2.3:3375761-3375780 MS.gene057039:CDS 45.0%
GTGCAGAGAATGTGCTCAAT+AGG + chr2.3:3375947-3375966 MS.gene057039:CDS 45.0%
TAGCCCCTGCAATATTTGTC+TGG - chr2.3:3374438-3374457 None:intergenic 45.0%
TGAACCAAAGATCGATGGAC+GGG + chr2.3:3375762-3375781 MS.gene057039:CDS 45.0%
TGTGATGAACACACATGACG+AGG + chr2.3:3374163-3374182 MS.gene057039:CDS 45.0%
TTGCTTCGACGTAAGCTTCA+TGG - chr2.3:3374734-3374753 None:intergenic 45.0%
! AGCTTTGGTATCCACGGTTA+TGG - chr2.3:3374285-3374304 None:intergenic 45.0%
! GCACTCCAGTATTGAGTATC+AGG - chr2.3:3375142-3375161 None:intergenic 45.0%
! GTTAGGAGCTTTGGTATCCA+CGG - chr2.3:3374291-3374310 None:intergenic 45.0%
AAAGATCGATGGACGGGCAA+AGG + chr2.3:3375768-3375787 MS.gene057039:CDS 50.0%
AAGATCGATGGACGGGCAAA+GGG + chr2.3:3375769-3375788 MS.gene057039:CDS 50.0%
ATAGGTCATCCACTGGTGCA+AGG - chr2.3:3375718-3375737 None:intergenic 50.0%
ATCAGGAAGAGGAGATGTGG+TGG - chr2.3:3375125-3375144 None:intergenic 50.0%
CAAGCATGAGCATCATGCCA+TGG - chr2.3:3374487-3374506 None:intergenic 50.0%
CAGAAGAAGGAGTGGCTGTA+AGG + chr2.3:3374090-3374109 MS.gene057039:CDS 50.0%
CTCTTGGACCTCCTTTGTTG+AGG - chr2.3:3374462-3374481 None:intergenic 50.0%
GACACAGAAATTGCGATCGG+AGG + chr2.3:3375791-3375810 MS.gene057039:CDS 50.0%
GTCATACCAATGTGGCCAGA+AGG + chr2.3:3374920-3374939 MS.gene057039:CDS 50.0%
GTTCACTCCAAGCTCGTGAT+AGG + chr2.3:3375190-3375209 MS.gene057039:intron 50.0%
TCACTTTCAGGCACTCCTTC+TGG - chr2.3:3374938-3374957 None:intergenic 50.0%
TTTGCCCGTCCATCGATCTT+TGG - chr2.3:3375769-3375788 None:intergenic 50.0%
! AAGCAATAAGGCGTGCCGAT+AGG + chr2.3:3374748-3374767 MS.gene057039:intron 50.0%
! GGTGGTTTCGATTTGTGCGA+CGG + chr2.3:3374344-3374363 MS.gene057039:CDS 50.0%
! TCATGCTTGTGTTACTGGCG+AGG + chr2.3:3374498-3374517 MS.gene057039:CDS 50.0%
!! TCATTGGAGGGTGCCATTTG+TGG + chr2.3:3374796-3374815 MS.gene057039:intron 50.0%
AAGGAGGTCCAAGAGAGCCA+TGG + chr2.3:3374467-3374486 MS.gene057039:CDS 55.0%
GCATCATGCCATGGCTCTCT+TGG - chr2.3:3374478-3374497 None:intergenic 55.0%
! TGCTTGTGTTACTGGCGAGG+CGG + chr2.3:3374501-3374520 MS.gene057039:CDS 55.0%
GGCACTCCTTCTGGCCACAT+TGG - chr2.3:3374929-3374948 None:intergenic 60.0%
TGTTACTGGCGAGGCGGCTT+GGG + chr2.3:3374507-3374526 MS.gene057039:CDS 60.0%
!! GCAGGGGCTAGCCTCAACAA+AGG + chr2.3:3374448-3374467 MS.gene057039:intron 60.0%
!! GGGGCTAGCCTCAACAAAGG+AGG + chr2.3:3374451-3374470 MS.gene057039:intron 60.0%
! GTGTTACTGGCGAGGCGGCT+TGG + chr2.3:3374506-3374525 MS.gene057039:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 3374047 3376009 3374047 ID=MS.gene057039
chr2.3 mRNA 3374047 3376009 3374047 ID=MS.gene057039.t1;Parent=MS.gene057039
chr2.3 exon 3374047 3374365 3374047 ID=MS.gene057039.t1.exon1;Parent=MS.gene057039.t1
chr2.3 CDS 3374047 3374365 3374047 ID=cds.MS.gene057039.t1;Parent=MS.gene057039.t1
chr2.3 exon 3374452 3374663 3374452 ID=MS.gene057039.t1.exon2;Parent=MS.gene057039.t1
chr2.3 CDS 3374452 3374663 3374452 ID=cds.MS.gene057039.t1;Parent=MS.gene057039.t1
chr2.3 exon 3374875 3375040 3374875 ID=MS.gene057039.t1.exon3;Parent=MS.gene057039.t1
chr2.3 CDS 3374875 3375040 3374875 ID=cds.MS.gene057039.t1;Parent=MS.gene057039.t1
chr2.3 exon 3375726 3376009 3375726 ID=MS.gene057039.t1.exon4;Parent=MS.gene057039.t1
chr2.3 CDS 3375726 3376009 3375726 ID=cds.MS.gene057039.t1;Parent=MS.gene057039.t1
Gene Sequence

>MS.gene057039

ATGCTAGAGGAAATAAAGTTGGGCGAGCTATTGAAAAAGAAAGCAGAAGAAGGAGTGGCTGTAAGGGTTATGATTTGGGATGATGAAACATCATTTCCATTTATCAAGAACAAAGGTGTGATGAACACACATGACGAGGAAGCTTTTGCATACTTTAAACACACAAAAGTAGTATGCAGAAGGTGTCCTAGATTACATGACAAATTCCCTACAATCTTTGCTCATCATCAAAAAACCATAACCGTGGATACCAAAGCTCCTAACTCTGTCAATGACAGAGAAATTATGAGCTTTTTGGGTGGTTTCGATTTGTGCGACGGTCGATATGATACCGAGAAACATTCATTGTTTGAACACTTGCTGAGGAATCACATTACCATGATTTCTACCAGACAAATATTGCAGGGGCTAGCCTCAACAAAGGAGGTCCAAGAGAGCCATGGCATGATGCTCATGCTTGTGTTACTGGCGAGGCGGCTTGGGATGTGTTAGCTAATTTTGAACAAAGATGGACAAAGCAATGTGATTCATCTCTTCTAGTCCCTGCAAACACCTTAGAAAATCTCATTCCTATTTCCTCAACAAGCACTTCTATGGAAAGGAATTGGAAAGTGCAAGTATACGGTCGATTGATCATGTCTCAGCTAGCCAACTGTTTAGAAAGCTAACAGTTGAGAGTAGTATCCATGAAGCTTACGTCGAAGCAATAAGGCGTGCCGATAGGTTTGTGTACATTGAAAACCAATATTTCATTGGAGGGTGCCATTTGTGGCAGAAAGATAAGAACAGTGGATGCACAAATTTGATTCCTATTGAGATTGCACTCAGGTGGTCAACAAGATTAAAGCAAGAGAAAGGTTTGCAGTGTATATAGTCATACCAATGTGGCCAGAAGGAGTGCCTGAAAGTGAACCAGTTCAAGATATACTGCATTGGACAAGAGAAACAATGACAATGATGTATAAGTTGATTGGAGAAGCAATCATAGAAAGTGGTGAGCCAGGACATCCGAGAGATTACTTGAATTTTCTTTTGCCTTGCAAATAGGGAAAAGAAGGAAAATGAGGAATATCTTCCACCACATCTCCTCTTCCTGATACTCAATACTGGAGTGCACAGAAAAATAGAAGATTCATGGTTTATGTTCACTCCAAGCTCGTGATAGGTATGATTAAACCATAAATATATGTTGGTTAAATTGCAGTTTTGGTCATCATATTTTCACACCGCTCACGAAATTTGTAGACTTTTGTACACAAAAGTGGGACATGGCAAATTTTCTATTGACGTGTCATAAACCTGCTGATGTAGAATCATCCAAGTGAATTTATAATACTAGGTTCTATGCCACGTCAATAAAAAAAATTGTCATGTTGTCACTTTAGATCCAAAATACGAGTAAGGGACCAAATAATTGGATTTAAAAGGAGGGATCGATTTCGTAAGCGAGAGAAAATAAGAAGACCAAAACCATGATCAAGCCATATATATATGTTCAACAACTAACTACTGTCACTATGTATGTTATTTTTAGCTATTCAACCTTTCCAATACAAAAACTTAATAGGAGTGATTTTTTACAATTAAATTCATTGCAATAACTCATTTTAGAAAGAGAAAACACCATTCATGATCTAGGTTTAACTAAAATGTGTTTTGTTTTTTGTTCCTTGCACCAGTGGATGACCTATATATACTAATAGGATCAGCAAATGTGAACCAAAGATCGATGGACGGGCAAAGGGACACAGAAATTGCGATCGGAGGCTACCAGTTTCATCAAGATGGAGTTGATCATCCCATAAGCAAAGGTGACATTCACGAATACAGAATGTCAATGTGGTATGAACACACTGGTAGTGCTGAGAAGTGTTTTTTAGAGCCAGAAAGTTTAGAATGTGTGCAGAGAATGTGCTCAATAGGAGATAAATGTGGAAAATCTACAGCAGTGAAGAAATTATGA
Protein sequence

>MS.gene057039.t1

MLEEIKLGELLKKKAEEGVAVRVMIWDDETSFPFIKNKGVMNTHDEEAFAYFKHTKVVCRRCPRLHDKFPTIFAHHQKTITVDTKAPNSVNDREIMSFLGGFDLCDGASLNKGGPREPWHDAHACVTGEAAWDVLANFEQRWTKQCDSSLLVPANTLENLIPISSTSTSMERNWKVQVVNKIKARERFAVYIVIPMWPEGVPESEPVQDILHWTRETMTMMYKLIGEAIIESVDDLYILIGSANVNQRSMDGQRDTEIAIGGYQFHQDGVDHPISKGDIHEYRMSMWYEHTGSAEKCFLEPESLECVQRMCSIGDKCGKSTAVKKL