AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057479

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057479.t1 MTR_7g013150 93.133 233 16 0 1 233 21 253 4.04e-165 456
MS.gene057479.t1 MTR_7g013140 87.069 232 30 0 2 233 20 251 1.39e-152 424
MS.gene057479.t1 MTR_7g013120 79.310 232 47 1 3 233 22 253 4.60e-140 392
MS.gene057479.t1 MTR_8g058990 74.678 233 59 0 1 233 21 253 4.64e-130 367
MS.gene057479.t1 MTR_8g464350 72.103 233 65 0 1 233 22 254 1.02e-127 361
MS.gene057479.t1 MTR_5g079950 61.883 223 83 1 10 230 33 255 5.10e-103 299
MS.gene057479.t1 MTR_3g094060 61.883 223 81 2 10 230 31 251 5.79e-100 291
MS.gene057479.t1 MTR_2g097030 60.987 223 85 1 10 230 34 256 9.43e-100 291
MS.gene057479.t1 MTR_3g094040 62.727 220 78 2 10 227 31 248 2.22e-99 290
MS.gene057479.t1 MTR_7g061720 60.987 223 85 1 10 230 32 254 7.60e-99 288
MS.gene057479.t1 MTR_5g075320 61.086 221 82 2 10 228 29 247 9.30e-96 280
MS.gene057479.t1 MTR_5g041700 61.364 220 81 2 10 227 25 242 1.22e-95 280
MS.gene057479.t1 MTR_3g435430 61.364 220 81 2 10 227 25 242 3.12e-95 279
MS.gene057479.t1 MTR_4g081950 60.909 220 82 2 10 227 61 278 7.94e-95 279
MS.gene057479.t1 MTR_3g466760 60.811 222 83 2 10 229 38 257 8.62e-94 276
MS.gene057479.t1 MTR_4g063975 60.268 224 87 1 9 230 31 254 1.06e-93 275
MS.gene057479.t1 MTR_3g466790 61.086 221 82 2 10 228 32 250 2.35e-93 274
MS.gene057479.t1 MTR_7g011060 59.459 222 82 2 9 230 25 238 5.59e-93 273
MS.gene057479.t1 MTR_1g085460 59.389 229 87 4 10 233 30 257 5.65e-92 271
MS.gene057479.t1 MTR_1g026020 57.018 228 93 3 10 233 29 255 2.47e-91 269
MS.gene057479.t1 MTR_7g111010 53.112 241 104 5 1 233 15 254 1.83e-85 254
MS.gene057479.t1 MTR_7g110990 55.022 229 97 4 10 233 12 239 3.02e-85 253
MS.gene057479.t1 MTR_4g124340 52.679 224 101 3 10 230 61 282 1.55e-84 253
MS.gene057479.t1 MTR_6g012520 59.276 221 82 2 10 230 28 240 5.01e-83 248
MS.gene057479.t1 MTR_5g076950 53.125 224 102 2 9 230 40 262 1.08e-82 248
MS.gene057479.t1 MTR_5g011210 53.070 228 103 3 9 233 36 262 1.17e-82 247
MS.gene057479.t1 MTR_0040s0140 50.885 226 109 1 7 230 29 254 4.78e-82 246
MS.gene057479.t1 MTR_4g102450 52.423 227 104 3 10 233 36 261 1.76e-79 239
MS.gene057479.t1 MTR_2g090255 49.115 226 113 1 7 230 25 250 2.53e-79 238
MS.gene057479.t1 MTR_3g064510 47.303 241 112 6 2 230 45 282 2.41e-71 219
MS.gene057479.t1 MTR_0008s0120 47.639 233 66 2 1 233 23 199 4.55e-68 208
MS.gene057479.t1 MTR_2g090270 32.500 240 138 8 6 233 31 258 1.77e-31 116
MS.gene057479.t1 MTR_0122s0020 33.061 245 140 9 1 233 32 264 2.87e-31 115
MS.gene057479.t1 MTR_6g012500 53.398 103 48 0 128 230 176 278 1.05e-30 115
MS.gene057479.t1 MTR_2g090265 31.799 239 139 9 7 233 30 256 3.11e-29 110
MS.gene057479.t1 MTR_4g028640 31.276 243 138 11 5 233 37 264 1.66e-24 98.2
MS.gene057479.t1 MTR_0809s0010 29.707 239 138 8 10 233 47 270 3.42e-23 94.7
MS.gene057479.t1 MTR_0118s0070 28.205 234 142 9 15 233 53 275 1.35e-19 85.1
MS.gene057479.t1 MTR_4g075790 29.918 244 136 9 2 229 15 239 3.94e-19 83.6
MS.gene057479.t1 MTR_4g099370 29.646 226 140 9 12 228 30 245 2.32e-18 81.6
MS.gene057479.t1 MTR_0122s0020 32.967 182 99 8 1 171 32 201 4.28e-18 79.7
MS.gene057479.t1 MTR_5g013440 29.258 229 145 11 13 233 32 251 1.01e-15 74.3
MS.gene057479.t1 MTR_1g085365 55.556 54 24 0 177 230 4 57 2.14e-13 63.5
MS.gene057479.t1 MTR_4g098930 27.039 233 138 10 13 229 32 248 8.71e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057479.t1 AT5G39280 68.240 233 72 1 1 233 45 275 6.33e-122 347
MS.gene057479.t1 AT5G39300 68.831 231 70 1 3 233 48 276 2.57e-121 346
MS.gene057479.t1 AT5G39270 66.234 231 76 1 3 233 51 279 5.61e-120 343
MS.gene057479.t1 AT5G39290 65.801 231 77 1 3 233 51 279 4.25e-119 340
MS.gene057479.t1 AT5G02260 64.126 223 78 1 10 230 32 254 2.69e-106 307
MS.gene057479.t1 AT2G39700 61.883 223 83 1 10 230 31 253 3.88e-103 299
MS.gene057479.t1 AT5G39310 63.111 225 80 2 10 233 90 312 4.63e-103 301
MS.gene057479.t1 AT2G37640 60.090 223 87 1 10 230 36 258 5.17e-101 294
MS.gene057479.t1 AT3G55500 60.090 223 87 1 10 230 34 256 2.01e-99 290
MS.gene057479.t1 AT5G56320 61.435 223 82 2 10 230 29 249 5.87e-98 286
MS.gene057479.t1 AT5G56320 61.435 223 82 2 10 230 29 249 5.87e-98 286
MS.gene057479.t1 AT5G56320 61.435 223 82 2 10 230 29 249 4.31e-97 285
MS.gene057479.t1 AT5G05290 61.435 223 81 3 10 229 32 252 4.73e-97 284
MS.gene057479.t1 AT1G69530 59.641 223 86 2 10 230 27 247 2.31e-96 283
MS.gene057479.t1 AT1G69530 60.455 220 83 2 10 227 27 244 2.83e-96 281
MS.gene057479.t1 AT1G69530 60.455 220 83 2 10 227 27 244 2.83e-96 281
MS.gene057479.t1 AT2G40610 60.870 230 85 3 3 229 23 250 3.98e-96 281
MS.gene057479.t1 AT2G03090 58.009 231 93 2 2 230 22 250 2.07e-95 280
MS.gene057479.t1 AT2G28950 58.744 223 90 1 10 230 31 253 1.93e-94 277
MS.gene057479.t1 AT2G37640 59.716 211 83 1 22 230 23 233 2.45e-94 276
MS.gene057479.t1 AT5G39260 58.621 232 88 3 3 233 38 262 4.30e-94 276
MS.gene057479.t1 AT3G29030 61.009 218 78 2 10 227 38 248 7.40e-94 276
MS.gene057479.t1 AT1G26770 57.692 234 94 3 2 233 18 248 1.76e-91 269
MS.gene057479.t1 AT1G26770 57.692 234 94 3 2 233 28 258 2.70e-91 269
MS.gene057479.t1 AT4G01630 53.782 238 104 4 1 233 19 255 5.83e-87 258
MS.gene057479.t1 AT1G12560 53.744 227 100 4 10 233 37 261 2.72e-86 256
MS.gene057479.t1 AT1G20190 54.425 226 98 3 12 233 28 252 3.07e-85 254
MS.gene057479.t1 AT1G69530 56.398 211 84 4 10 216 27 233 1.15e-81 244
MS.gene057479.t1 AT1G69530 62.431 181 64 2 10 188 27 205 1.21e-81 243
MS.gene057479.t1 AT1G62980 51.101 227 107 3 10 233 31 256 5.70e-81 243
MS.gene057479.t1 AT3G03220 51.339 224 106 2 9 230 39 261 2.44e-79 239
MS.gene057479.t1 AT4G38210 45.778 225 118 2 10 230 28 252 2.93e-73 223
MS.gene057479.t1 AT1G20190 53.886 193 84 3 45 233 2 193 1.33e-70 214
MS.gene057479.t1 AT3G15370 46.903 226 112 5 10 231 27 248 1.02e-68 212
MS.gene057479.t1 AT3G15370 47.596 208 101 5 29 232 76 279 7.26e-63 197
MS.gene057479.t1 AT4G28250 32.353 238 134 11 10 233 36 260 1.09e-26 103
MS.gene057479.t1 AT2G20750 33.891 239 134 11 9 233 39 267 7.87e-26 102
MS.gene057479.t1 AT4G28250 31.646 237 131 11 10 233 36 254 7.06e-25 99.0
MS.gene057479.t1 AT2G45110 31.064 235 137 7 13 233 36 259 8.42e-25 99.0
MS.gene057479.t1 AT1G65680 32.645 242 136 11 7 233 44 273 2.80e-24 97.8
MS.gene057479.t1 AT1G65681 31.390 223 130 7 23 233 11 222 6.55e-24 95.9
MS.gene057479.t1 AT3G60570 29.114 237 142 7 10 233 34 257 3.05e-20 87.0
MS.gene057479.t1 AT3G45970 31.507 219 116 9 29 229 15 217 1.74e-17 79.0
MS.gene057479.t1 AT3G60570 27.982 218 131 7 29 233 5 209 1.83e-16 75.9
MS.gene057479.t1 AT3G45970 30.698 215 115 9 33 229 46 244 6.56e-15 72.4
MS.gene057479.t1 AT4G38400 29.954 217 113 11 33 229 47 244 3.43e-14 70.5
MS.gene057479.t1 AT3G45960 31.980 197 109 10 46 229 11 195 7.08e-14 68.6
MS.gene057479.t1 AT4G17030 27.948 229 142 9 12 229 29 245 8.71e-14 68.9
MS.gene057479.t1 AT3G45960 30.952 210 120 10 33 229 46 243 1.00e-13 68.9

Find 58 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCCTTCCAATTGGCAATT+TGG 0.192444 7.2:-84131508 MS.gene057479:CDS
TTGGACTCCTGGATCTAATT+TGG 0.210946 7.2:-84131596 MS.gene057479:CDS
GTTTCTCATGTGAGTATTAA+AGG 0.232919 7.2:-84131664 MS.gene057479:CDS
CCCTTATTTCTTTCTAGCTT+TGG 0.238741 7.2:-84131713 MS.gene057479:CDS
ACTCGAAGACCACCGATATT+TGG 0.251454 7.2:-84131879 MS.gene057479:CDS
CTAGCAGCATTGACTTAAAA+TGG 0.283683 7.2:-84132609 MS.gene057479:CDS
CACGCAATTGGGGACAAAAT+TGG 0.290938 7.2:-84131615 MS.gene057479:CDS
ACCAAAGCTAGAAAGAAATA+AGG 0.300240 7.2:+84131712 None:intergenic
GATGCTCATGCAACCTTCTA+TGG 0.306725 7.2:-84132583 MS.gene057479:CDS
GATCTCTTCAAACAAGGATA+TGG 0.334674 7.2:-84132054 MS.gene057479:CDS
GGATTTCCATGTCACGCAAT+TGG 0.349848 7.2:-84131627 MS.gene057479:CDS
TTTGTTGCGGTTATCGTGAT+AGG 0.354832 7.2:+84131919 None:intergenic
CGATCCTCAATGGTGCATAA+AGG 0.355600 7.2:-84131950 MS.gene057479:CDS
GACGATACCTGCTTTGTAAT+AGG 0.376187 7.2:+84131801 None:intergenic
GATTTCCATGTCACGCAATT+GGG 0.376885 7.2:-84131626 MS.gene057479:CDS
GGAACACGTCGATATTTAAC+CGG 0.390383 7.2:+84131778 None:intergenic
ACCAGCTGCGTCACCATAGA+AGG 0.408935 7.2:+84132570 None:intergenic
AGTACAGCTCTATTCAATAA+TGG 0.412808 7.2:-84132012 MS.gene057479:CDS
CCAAAGCTAGAAAGAAATAA+GGG 0.424398 7.2:+84131713 None:intergenic
TTTCTCATGTGAGTATTAAA+GGG 0.433008 7.2:-84131663 MS.gene057479:CDS
ATTCGGTTGCTCCTTCCAAT+TGG 0.443039 7.2:-84131516 MS.gene057479:CDS
GATCCTCAATGGTGCATAAA+GGG 0.454210 7.2:-84131949 MS.gene057479:CDS
TCGGTGGTCTTCGAGTAATC+TGG 0.456534 7.2:+84131886 None:intergenic
TGGGGACAAAATTGGACTCC+TGG 0.464996 7.2:-84131607 MS.gene057479:CDS
TGCTTTGTAATAGGCAATAG+AGG 0.484820 7.2:+84131810 None:intergenic
GTGTACAATGTTGCCAATGC+TGG 0.492882 7.2:-84131691 MS.gene057479:CDS
ACCTTCTATGGTGACGCAGC+TGG 0.497545 7.2:-84132571 MS.gene057479:CDS
TTTCAAGTTAGTACAAGTGA+TGG 0.503641 7.2:-84131556 MS.gene057479:CDS
GGTGTTAGATTTGAGATCAA+AGG 0.518196 7.2:-84131739 MS.gene057479:CDS
TTGTCCCCAATTGCGTGACA+TGG 0.518870 7.2:+84131621 None:intergenic
TTGTTGCGGTTATCGTGATA+GGG 0.528029 7.2:+84131920 None:intergenic
ATGAGAAACATCACCAGCAT+TGG 0.529328 7.2:+84131678 None:intergenic
TTAAAGGGTCTAAGACTGGT+TGG 0.531613 7.2:-84131648 MS.gene057479:CDS
CGTGTTCCATGCATCAAAAG+TGG 0.536521 7.2:-84131763 MS.gene057479:CDS
GGTCTGTCCAAATTGCCAAT+TGG 0.537195 7.2:+84131501 None:intergenic
TCTATTGCCTATTACAAAGC+AGG 0.544747 7.2:-84131808 MS.gene057479:CDS
AGTATTAAAGGGTCTAAGAC+TGG 0.548218 7.2:-84131652 MS.gene057479:CDS
TGTCCTACCAAATTAGATCC+AGG 0.552069 7.2:+84131589 None:intergenic
TGGACAGACCTACGAGGCCA+AGG 0.553270 7.2:-84131488 MS.gene057479:CDS
TTTGTGTCAACGATCCTCAA+TGG 0.553629 7.2:-84131960 MS.gene057479:CDS
AAAATTTCCCTTGGCCTCGT+AGG 0.559321 7.2:+84131480 None:intergenic
GCACCCTTTATGCACCATTG+AGG 0.561751 7.2:+84131946 None:intergenic
TATTTGAAAACAAGCACCAC+AGG 0.572041 7.2:+84131984 None:intergenic
ATTTCCATGTCACGCAATTG+GGG 0.577980 7.2:-84131625 MS.gene057479:CDS
ACTCCTGGATCTAATTTGGT+AGG 0.596348 7.2:-84131592 MS.gene057479:CDS
TTCAATAATGGACTTACCTG+TGG 0.598171 7.2:-84132000 MS.gene057479:CDS
TGTCCAAATTGCCAATTGGA+AGG 0.609662 7.2:+84131505 None:intergenic
TTCTATGGTGACGCAGCTGG+TGG 0.617803 7.2:-84132568 MS.gene057479:CDS
GAACACGTCGATATTTAACC+GGG 0.618973 7.2:+84131779 None:intergenic
TGTACTAACTTGAAATGACA+AGG 0.641185 7.2:+84131564 None:intergenic
GGACAGACCTACGAGGCCAA+GGG 0.645522 7.2:-84131487 MS.gene057479:CDS
TTACAAAGCAGGTATCGTCC+CGG 0.647570 7.2:-84131797 MS.gene057479:CDS
TATGGTGATCTCTTCAAACA+AGG 0.652392 7.2:-84132060 MS.gene057479:CDS
GTTCCATGCATCAAAAGTGG+AGG 0.667109 7.2:-84131760 MS.gene057479:CDS
GTGGTCTTCGAGTAATCTGG+AGG 0.686927 7.2:+84131889 None:intergenic
GGGATTACACCAAATATCGG+TGG 0.692962 7.2:+84131870 None:intergenic
TAGAGCTGTACTTAGTGCTG+CGG 0.703803 7.2:+84132023 None:intergenic
GCAATTTGGACAGACCTACG+AGG 0.762624 7.2:-84131494 MS.gene057479:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAATATGAATTTTTTTATAT+TGG + chr7.2:84131812-84131831 None:intergenic 10.0%
!!! TATTTTTTTTTATTTGTGTA+CGG + chr7.2:84131944-84131963 None:intergenic 10.0%
!! CATTAAAAAATAACATGTAA+AGG + chr7.2:84131590-84131609 None:intergenic 15.0%
!!! AAAAACTTTAACGTTTTATT+CGG - chr7.2:84132560-84132579 MS.gene057479:CDS 15.0%
!!! ATTTTTTTATATTGGTGTAT+CGG + chr7.2:84131804-84131823 None:intergenic 15.0%
!!! TTTTTTAATGATAGATCAAA+TGG - chr7.2:84131870-84131889 MS.gene057479:CDS 15.0%
!! TTTGTGATTGTATATTGTTA+TGG + chr7.2:84131644-84131663 None:intergenic 20.0%
!!! TTAATTTTATAACTTACGCA+TGG + chr7.2:84131556-84131575 None:intergenic 20.0%
! ATGGTATTTAATTATGCAGA+GGG - chr7.2:84132000-84132019 MS.gene057479:CDS 25.0%
! TATGGTATTTAATTATGCAG+AGG - chr7.2:84131999-84132018 MS.gene057479:CDS 25.0%
! TTTCTCATGTGAGTATTAAA+GGG - chr7.2:84132430-84132449 MS.gene057479:intron 25.0%
ACCAAAGCTAGAAAGAAATA+AGG + chr7.2:84132384-84132403 None:intergenic 30.0%
AGTACAGCTCTATTCAATAA+TGG - chr7.2:84132081-84132100 MS.gene057479:intron 30.0%
CCAAAGCTAGAAAGAAATAA+GGG + chr7.2:84132383-84132402 None:intergenic 30.0%
GTTTCTCATGTGAGTATTAA+AGG - chr7.2:84132429-84132448 MS.gene057479:intron 30.0%
TGGTATTTAATTATGCAGAG+GGG - chr7.2:84132001-84132020 MS.gene057479:CDS 30.0%
TGTACTAACTTGAAATGACA+AGG + chr7.2:84132532-84132551 None:intergenic 30.0%
TTTATTTGTGTACGGACATA+GGG + chr7.2:84131936-84131955 None:intergenic 30.0%
!! CTTAAATCGAAGTGTTTTTG+CGG + chr7.2:84132249-84132268 None:intergenic 30.0%
!! TTAAATCGAAGTGTTTTTGC+GGG + chr7.2:84132248-84132267 None:intergenic 30.0%
!! TTTCAAGTTAGTACAAGTGA+TGG - chr7.2:84132537-84132556 MS.gene057479:intron 30.0%
!! TTTTATTTGTGTACGGACAT+AGG + chr7.2:84131937-84131956 None:intergenic 30.0%
GATCTCTTCAAACAAGGATA+TGG - chr7.2:84132039-84132058 MS.gene057479:CDS 35.0%
GGTATTTAATTATGCAGAGG+GGG - chr7.2:84132002-84132021 MS.gene057479:CDS 35.0%
TATATTGGTGTATCGGATGT+AGG + chr7.2:84131797-84131816 None:intergenic 35.0%
TATGGTGATCTCTTCAAACA+AGG - chr7.2:84132033-84132052 MS.gene057479:CDS 35.0%
TATTTGAAAACAAGCACCAC+AGG + chr7.2:84132112-84132131 None:intergenic 35.0%
TCTATTGCCTATTACAAAGC+AGG - chr7.2:84132285-84132304 MS.gene057479:intron 35.0%
TGCTTTGTAATAGGCAATAG+AGG + chr7.2:84132286-84132305 None:intergenic 35.0%
! AGTATTAAAGGGTCTAAGAC+TGG - chr7.2:84132441-84132460 MS.gene057479:intron 35.0%
! GGTGTTAGATTTGAGATCAA+AGG - chr7.2:84132354-84132373 MS.gene057479:intron 35.0%
!! CCCTTATTTCTTTCTAGCTT+TGG - chr7.2:84132380-84132399 MS.gene057479:intron 35.0%
!! CTAGCAGCATTGACTTAAAA+TGG - chr7.2:84131484-84131503 MS.gene057479:CDS 35.0%
!! TAAATCGAAGTGTTTTTGCG+GGG + chr7.2:84132247-84132266 None:intergenic 35.0%
!! TGGAGGACAAAAATTTGTTG+CGG + chr7.2:84132190-84132209 None:intergenic 35.0%
!! TTCAATAATGGACTTACCTG+TGG - chr7.2:84132093-84132112 MS.gene057479:intron 35.0%
ACTCCTGGATCTAATTTGGT+AGG - chr7.2:84132501-84132520 MS.gene057479:intron 40.0%
ATGAGAAACATCACCAGCAT+TGG + chr7.2:84132418-84132437 None:intergenic 40.0%
ATTTCCATGTCACGCAATTG+GGG - chr7.2:84132468-84132487 MS.gene057479:intron 40.0%
GAACACGTCGATATTTAACC+GGG + chr7.2:84132317-84132336 None:intergenic 40.0%
GACGATACCTGCTTTGTAAT+AGG + chr7.2:84132295-84132314 None:intergenic 40.0%
GATCCTCAATGGTGCATAAA+GGG - chr7.2:84132144-84132163 MS.gene057479:intron 40.0%
GATTTCCATGTCACGCAATT+GGG - chr7.2:84132467-84132486 MS.gene057479:intron 40.0%
GGAACACGTCGATATTTAAC+CGG + chr7.2:84132318-84132337 None:intergenic 40.0%
TGTCCAAATTGCCAATTGGA+AGG + chr7.2:84132591-84132610 None:intergenic 40.0%
TGTCCTACCAAATTAGATCC+AGG + chr7.2:84132507-84132526 None:intergenic 40.0%
TTGGACTCCTGGATCTAATT+TGG - chr7.2:84132497-84132516 MS.gene057479:intron 40.0%
TTGTTGCGGTTATCGTGATA+GGG + chr7.2:84132176-84132195 None:intergenic 40.0%
TTTGTGTCAACGATCCTCAA+TGG - chr7.2:84132133-84132152 MS.gene057479:intron 40.0%
TTTGTTGCGGTTATCGTGAT+AGG + chr7.2:84132177-84132196 None:intergenic 40.0%
! TTAAAGGGTCTAAGACTGGT+TGG - chr7.2:84132445-84132464 MS.gene057479:intron 40.0%
!! AAATCGAAGTGTTTTTGCGG+GGG + chr7.2:84132246-84132265 None:intergenic 40.0%
AAAATTTCCCTTGGCCTCGT+AGG + chr7.2:84132616-84132635 None:intergenic 45.0%
ACTCGAAGACCACCGATATT+TGG - chr7.2:84132214-84132233 MS.gene057479:intron 45.0%
ATTCGGTTGCTCCTTCCAAT+TGG - chr7.2:84132577-84132596 MS.gene057479:CDS 45.0%
CACGCAATTGGGGACAAAAT+TGG - chr7.2:84132478-84132497 MS.gene057479:intron 45.0%
CGATCCTCAATGGTGCATAA+AGG - chr7.2:84132143-84132162 MS.gene057479:intron 45.0%
CGGGGGATTACACCAAATAT+CGG + chr7.2:84132229-84132248 None:intergenic 45.0%
CGTGTTCCATGCATCAAAAG+TGG - chr7.2:84132330-84132349 MS.gene057479:intron 45.0%
GATGCTCATGCAACCTTCTA+TGG - chr7.2:84131510-84131529 MS.gene057479:CDS 45.0%
GCTCCTTCCAATTGGCAATT+TGG - chr7.2:84132585-84132604 MS.gene057479:CDS 45.0%
GGATTTCCATGTCACGCAAT+TGG - chr7.2:84132466-84132485 MS.gene057479:intron 45.0%
GGGATTACACCAAATATCGG+TGG + chr7.2:84132226-84132245 None:intergenic 45.0%
GGTCTGTCCAAATTGCCAAT+TGG + chr7.2:84132595-84132614 None:intergenic 45.0%
GTGTACAATGTTGCCAATGC+TGG - chr7.2:84132402-84132421 MS.gene057479:intron 45.0%
GTTCCATGCATCAAAAGTGG+AGG - chr7.2:84132333-84132352 MS.gene057479:intron 45.0%
TAGAGCTGTACTTAGTGCTG+CGG + chr7.2:84132073-84132092 None:intergenic 45.0%
! TTACAAAGCAGGTATCGTCC+CGG - chr7.2:84132296-84132315 MS.gene057479:intron 45.0%
!! ACACCTCCACTTTTGATGCA+TGG + chr7.2:84132339-84132358 None:intergenic 45.0%
!! TATATAATTAATAATGTATT+TGG - chr7.2:84131693-84131712 MS.gene057479:CDS 5.0%
!!! TATTGTTTTTATATAATATA+TGG - chr7.2:84131981-84132000 MS.gene057479:CDS 5.0%
AATTATGCAGAGGGGGCTTG+TGG - chr7.2:84132009-84132028 MS.gene057479:CDS 50.0%
GCAATTTGGACAGACCTACG+AGG - chr7.2:84132599-84132618 MS.gene057479:CDS 50.0%
GCACCCTTTATGCACCATTG+AGG + chr7.2:84132150-84132169 None:intergenic 50.0%
GTGGTCTTCGAGTAATCTGG+AGG + chr7.2:84132207-84132226 None:intergenic 50.0%
TCGGTGGTCTTCGAGTAATC+TGG + chr7.2:84132210-84132229 None:intergenic 50.0%
TGGGGACAAAATTGGACTCC+TGG - chr7.2:84132486-84132505 MS.gene057479:intron 50.0%
TTGTCCCCAATTGCGTGACA+TGG + chr7.2:84132475-84132494 None:intergenic 50.0%
ACCAGCTGCGTCACCATAGA+AGG + chr7.2:84131526-84131545 None:intergenic 55.0%
! ACCTTCTATGGTGACGCAGC+TGG - chr7.2:84131522-84131541 MS.gene057479:CDS 55.0%
! TTCTATGGTGACGCAGCTGG+TGG - chr7.2:84131525-84131544 MS.gene057479:CDS 55.0%
GCAGAGGGGGCTTGTGGTTA+TGG - chr7.2:84132015-84132034 MS.gene057479:CDS 60.0%
GGACAGACCTACGAGGCCAA+GGG - chr7.2:84132606-84132625 MS.gene057479:CDS 60.0%
TGGACAGACCTACGAGGCCA+AGG - chr7.2:84132605-84132624 MS.gene057479:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 84131477 84132638 84131477 ID=MS.gene057479
chr7.2 mRNA 84131477 84132638 84131477 ID=MS.gene057479.t1;Parent=MS.gene057479
chr7.2 exon 84132557 84132638 84132557 ID=MS.gene057479.t1.exon1;Parent=MS.gene057479.t1
chr7.2 CDS 84132557 84132638 84132557 ID=cds.MS.gene057479.t1;Parent=MS.gene057479.t1
chr7.2 exon 84131477 84132096 84131477 ID=MS.gene057479.t1.exon2;Parent=MS.gene057479.t1
chr7.2 CDS 84131477 84132096 84131477 ID=cds.MS.gene057479.t1;Parent=MS.gene057479.t1
Gene Sequence

>MS.gene057479

ATGTCAACTAGCAGCATTGACTTAAAATGGTACGATGCTCATGCAACCTTCTATGGTGACGCAGCTGGTGGTGAAACCATGCGTAAGTTATAAAATTAATCTTCATTTTTCCTTTACATGTTATTTTTTAATGATATATCATACACATTTAATTTAGACTCTTACCATAACAATATACAATCACAAATCTAGTTTTTAAATGAAGATCAGATTACTTATATAATTAATAATGTATTTGGATGTAGATATGATGAAATCAAATATGTATCGCATGCAAGCTTTGCAATGCACATGATTGTCACATTTTTTTTATGAAACCTACATCCGATACACCAATATAAAAAAATTCATATTCAATAATTTCATTGTTTTTTATACAATATTTAAAAATTGTTTTTTAATGATAGATCAAATGGCATATATATTTCATAATATTTGAAGTAGATATGATGAAATCCCTATGTCCGTACACAAATAAAAAAAAATAATATTCAATTATTATTTTATTGTTTTTATATAATATATGGTATTTAATTATGCAGAGGGGGCTTGTGGTTATGGTGATCTCTTCAAACAAGGATATGGTCTTGCAACCGCAGCACTAAGTACAGCTCTATTCAATAATGGACTTACCTGTGGTGCTTGTTTTCAAATAATTTGTGTCAACGATCCTCAATGGTGCATAAAGGGTGCACACCCTATCACGATAACCGCAACAAATTTTTGTCCTCCAGATTACTCGAAGACCACCGATATTTGGTGTAATCCCCCGCAAAAACACTTCGATTTAAGCTATAAAATGTTCACCTCTATTGCCTATTACAAAGCAGGTATCGTCCCGGTTAAATATCGACGTGTTCCATGCATCAAAAGTGGAGGTGTTAGATTTGAGATCAAAGGAAACCCTTATTTCTTTCTAGCTTTGGTGTACAATGTTGCCAATGCTGGTGATGTTTCTCATGTGAGTATTAAAGGGTCTAAGACTGGTTGGATTTCCATGTCACGCAATTGGGGACAAAATTGGACTCCTGGATCTAATTTGGTAGGACAAGCCTTGTCATTTCAAGTTAGTACAAGTGATGGAAAAACTTTAACGTTTTATTCGGTTGCTCCTTCCAATTGGCAATTTGGACAGACCTACGAGGCCAAGGGAAATTTTTAG
Protein sequence

>MS.gene057479.t1

MSTSSIDLKWYDAHATFYGDAAGGETMQGACGYGDLFKQGYGLATAALSTALFNNGLTCGACFQIICVNDPQWCIKGAHPITITATNFCPPDYSKTTDIWCNPPQKHFDLSYKMFTSIAYYKAGIVPVKYRRVPCIKSGGVRFEIKGNPYFFLALVYNVANAGDVSHVSIKGSKTGWISMSRNWGQNWTPGSNLVGQALSFQVSTSDGKTLTFYSVAPSNWQFGQTYEAKGNF