AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057481

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057481.t1 MTR_7g013120 95.652 253 11 0 1 253 1 253 0.0 508
MS.gene057481.t1 MTR_7g013140 79.842 253 49 2 1 253 1 251 5.68e-152 423
MS.gene057481.t1 MTR_7g013150 76.378 254 58 2 1 253 1 253 2.29e-146 409
MS.gene057481.t1 MTR_8g058990 75.197 254 61 2 1 253 1 253 6.90e-143 400
MS.gene057481.t1 MTR_8g464350 70.980 255 71 3 1 253 1 254 6.62e-131 370
MS.gene057481.t1 MTR_5g079950 57.490 247 98 4 10 250 10 255 3.30e-98 288
MS.gene057481.t1 MTR_3g094060 56.612 242 100 3 12 251 14 252 2.13e-97 285
MS.gene057481.t1 MTR_3g094040 56.198 242 101 3 12 251 14 252 3.53e-96 282
MS.gene057481.t1 MTR_5g041700 55.645 248 105 3 6 251 2 246 4.67e-96 281
MS.gene057481.t1 MTR_5g075320 54.545 253 105 5 4 251 3 250 3.17e-95 280
MS.gene057481.t1 MTR_2g097030 56.198 242 101 3 13 250 16 256 3.83e-95 280
MS.gene057481.t1 MTR_3g435430 60.444 225 84 3 29 251 25 246 7.82e-95 278
MS.gene057481.t1 MTR_7g061720 58.482 224 90 2 29 250 32 254 2.13e-94 278
MS.gene057481.t1 MTR_4g081950 59.556 225 86 3 29 251 61 282 5.61e-94 278
MS.gene057481.t1 MTR_1g085460 56.769 229 94 3 29 253 30 257 1.72e-91 270
MS.gene057481.t1 MTR_7g011060 53.846 247 104 4 6 251 2 239 6.11e-91 268
MS.gene057481.t1 MTR_4g063975 55.833 240 101 3 15 250 16 254 9.42e-90 266
MS.gene057481.t1 MTR_1g026020 55.022 229 97 4 29 253 29 255 1.72e-89 265
MS.gene057481.t1 MTR_3g466790 53.125 256 112 4 1 251 1 253 3.03e-89 265
MS.gene057481.t1 MTR_3g466760 53.125 256 112 4 1 251 7 259 3.31e-89 265
MS.gene057481.t1 MTR_4g124340 52.889 225 102 2 28 250 60 282 2.61e-86 258
MS.gene057481.t1 MTR_7g111010 48.235 255 127 3 3 253 1 254 9.83e-86 256
MS.gene057481.t1 MTR_7g110990 52.402 229 104 3 29 253 12 239 4.62e-85 253
MS.gene057481.t1 MTR_5g011210 53.275 229 102 4 28 253 36 262 8.38e-83 249
MS.gene057481.t1 MTR_6g012520 52.800 250 108 4 3 251 1 241 4.22e-81 244
MS.gene057481.t1 MTR_4g102450 53.947 228 100 4 29 253 36 261 2.59e-80 242
MS.gene057481.t1 MTR_0040s0140 48.996 249 122 3 7 251 8 255 1.35e-79 240
MS.gene057481.t1 MTR_2g090255 48.571 245 120 3 12 251 8 251 1.45e-78 238
MS.gene057481.t1 MTR_5g076950 53.097 226 102 3 28 251 40 263 1.72e-77 235
MS.gene057481.t1 MTR_0008s0120 49.609 256 69 6 1 253 1 199 1.65e-72 220
MS.gene057481.t1 MTR_3g064510 46.154 234 114 6 28 251 52 283 1.37e-65 206
MS.gene057481.t1 MTR_2g090270 33.333 240 137 7 25 253 31 258 5.48e-34 123
MS.gene057481.t1 MTR_0122s0020 33.333 246 141 7 19 253 31 264 6.48e-33 120
MS.gene057481.t1 MTR_2g090265 31.343 268 155 9 3 253 1 256 5.31e-32 118
MS.gene057481.t1 MTR_6g012500 51.429 105 50 1 147 251 176 279 2.58e-28 109
MS.gene057481.t1 MTR_4g028640 29.091 275 153 11 5 253 6 264 4.48e-22 92.4
MS.gene057481.t1 MTR_0809s0010 29.167 240 141 8 28 253 46 270 6.95e-22 92.0
MS.gene057481.t1 MTR_4g075790 29.796 245 142 8 17 248 11 238 6.52e-20 86.3
MS.gene057481.t1 MTR_0122s0020 33.333 183 99 7 19 190 31 201 2.94e-19 83.6
MS.gene057481.t1 MTR_4g099370 27.059 255 169 8 1 248 1 245 4.57e-19 84.0
MS.gene057481.t1 MTR_0118s0070 28.085 235 142 9 34 253 53 275 2.23e-18 82.4
MS.gene057481.t1 MTR_5g013440 29.237 236 137 10 32 253 32 251 5.29e-18 80.9
MS.gene057481.t1 MTR_4g098930 25.660 265 162 13 1 248 1 247 4.86e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057481.t1 AT5G39280 66.234 231 75 2 23 253 48 275 1.37e-115 332
MS.gene057481.t1 AT5G39300 65.254 236 79 2 18 253 44 276 2.68e-115 332
MS.gene057481.t1 AT5G39270 63.362 232 82 2 22 253 51 279 5.83e-111 321
MS.gene057481.t1 AT5G39290 62.931 232 83 2 22 253 51 279 4.08e-110 318
MS.gene057481.t1 AT5G02260 56.972 251 98 3 10 251 6 255 1.41e-102 299
MS.gene057481.t1 AT2G39700 55.906 254 107 3 1 250 1 253 2.01e-100 293
MS.gene057481.t1 AT5G39310 60.177 226 86 3 29 253 90 312 1.25e-98 291
MS.gene057481.t1 AT2G40610 56.175 251 103 4 3 251 7 252 1.73e-98 288
MS.gene057481.t1 AT2G37640 60.268 224 86 2 29 250 36 258 4.09e-98 288
MS.gene057481.t1 AT5G05290 55.600 250 107 2 4 251 7 254 1.44e-97 286
MS.gene057481.t1 AT3G55500 54.864 257 108 3 1 250 1 256 2.70e-97 285
MS.gene057481.t1 AT5G56320 56.846 241 99 3 13 251 13 250 4.96e-97 285
MS.gene057481.t1 AT5G56320 56.846 241 99 3 13 251 13 250 4.96e-97 285
MS.gene057481.t1 AT5G56320 56.846 241 99 3 13 251 13 250 6.85e-96 283
MS.gene057481.t1 AT1G69530 56.275 247 99 4 11 251 5 248 6.52e-95 279
MS.gene057481.t1 AT1G69530 56.275 247 99 4 11 251 5 248 6.52e-95 279
MS.gene057481.t1 AT2G03090 58.009 231 92 3 23 251 24 251 4.67e-94 277
MS.gene057481.t1 AT1G69530 56.379 243 97 4 11 247 5 244 1.88e-93 276
MS.gene057481.t1 AT2G28950 57.778 225 92 2 29 251 31 254 8.55e-92 271
MS.gene057481.t1 AT5G39260 56.223 233 93 4 22 253 38 262 6.38e-90 267
MS.gene057481.t1 AT2G37640 60.386 207 79 2 46 250 28 233 8.31e-90 265
MS.gene057481.t1 AT3G29030 59.193 223 83 3 29 251 38 252 8.47e-90 266
MS.gene057481.t1 AT1G26770 53.061 245 107 4 12 251 6 247 1.51e-89 265
MS.gene057481.t1 AT1G26770 53.061 245 107 4 12 251 16 257 2.81e-89 265
MS.gene057481.t1 AT4G01630 50.598 251 117 4 7 253 8 255 1.17e-86 258
MS.gene057481.t1 AT1G20190 52.423 227 102 4 31 253 28 252 8.15e-83 248
MS.gene057481.t1 AT1G62980 50.410 244 116 4 13 253 15 256 2.17e-82 247
MS.gene057481.t1 AT1G12560 53.947 228 99 5 29 253 37 261 6.04e-82 246
MS.gene057481.t1 AT1G69530 49.798 247 85 5 11 251 5 218 2.47e-80 241
MS.gene057481.t1 AT1G69530 56.311 206 81 4 11 210 5 207 3.78e-80 241
MS.gene057481.t1 AT3G03220 48.673 226 112 3 28 251 39 262 9.07e-73 223
MS.gene057481.t1 AT4G38210 45.492 244 125 4 12 251 14 253 1.26e-72 223
MS.gene057481.t1 AT3G15370 46.122 245 124 5 10 250 7 247 3.15e-69 214
MS.gene057481.t1 AT1G20190 51.546 194 88 4 64 253 2 193 2.78e-67 207
MS.gene057481.t1 AT3G15370 41.697 271 120 6 14 250 11 277 2.15e-62 197
MS.gene057481.t1 AT4G28250 34.034 238 133 8 28 253 35 260 1.58e-29 112
MS.gene057481.t1 AT2G20750 32.773 238 139 8 28 253 39 267 3.12e-28 108
MS.gene057481.t1 AT4G28250 33.333 237 130 8 28 253 35 254 1.32e-27 107
MS.gene057481.t1 AT1G65680 30.943 265 152 11 3 253 26 273 6.18e-25 100
MS.gene057481.t1 AT2G45110 31.513 238 133 9 32 253 36 259 8.05e-23 94.4
MS.gene057481.t1 AT1G65681 30.088 226 130 9 42 253 11 222 2.61e-20 86.7
MS.gene057481.t1 AT3G60570 28.996 269 158 9 4 253 3 257 7.07e-20 86.3
MS.gene057481.t1 AT4G17030 26.984 252 170 8 3 248 1 244 1.60e-18 82.4
MS.gene057481.t1 AT2G20750 30.645 186 107 8 28 202 39 213 8.48e-16 74.3
MS.gene057481.t1 AT3G45970 27.523 218 127 8 48 249 15 217 2.72e-13 67.8
MS.gene057481.t1 AT4G38400 26.291 213 127 8 52 249 47 244 3.04e-12 65.1
MS.gene057481.t1 AT3G45960 26.570 207 134 7 52 249 46 243 1.09e-11 63.5
MS.gene057481.t1 AT3G45970 26.636 214 126 8 52 249 46 244 9.35e-11 60.8

Find 54 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGAGGGCTTGTTGTAATT+TGG 0.191352 7.2:+84238888 None:intergenic
CAAATGGCATTGACTTAAAT+TGG 0.203443 7.2:-84239433 MS.gene057481:CDS
CACACAATTGGGGACAAAAT+TGG 0.208585 7.2:-84238614 MS.gene057481:CDS
CATGGCTTTATCTCACTCTT+TGG 0.222101 7.2:-84239498 MS.gene057481:CDS
GGAACACGTTTATACTTAAC+TGG 0.224439 7.2:+84238780 None:intergenic
TTGGGACACTGGAGTGAATT+TGG 0.231054 7.2:-84238595 MS.gene057481:CDS
GCTCCTTCGAATTGGCAATT+TGG 0.285681 7.2:-84238507 MS.gene057481:CDS
ACCAGAGGCGTCACCATAAA+AGG 0.287880 7.2:+84239394 None:intergenic
ACAACAAGCCCTCTGAAAAT+TGG 0.303180 7.2:-84238881 MS.gene057481:CDS
GATCTCTTCAAACAAGGATA+TGG 0.315630 7.2:-84239056 MS.gene057481:CDS
AGCACTGCTCTATTCAATAA+TGG 0.326683 7.2:-84239014 MS.gene057481:CDS
CGTTCGTTGCTCCTTCGAAT+TGG 0.332821 7.2:-84238515 MS.gene057481:CDS
GTTTCTCATGTTCGTGTTAG+AGG 0.335652 7.2:-84238666 MS.gene057481:CDS
TACGAGGAGCATCATTAAAA+AGG 0.341890 7.2:+84239466 None:intergenic
GGATTTCGATGTCACACAAT+TGG 0.361834 7.2:-84238626 MS.gene057481:CDS
GATTTCGATGTCACACAATT+GGG 0.382188 7.2:-84238625 MS.gene057481:CDS
CACGAGTGATGGAAAGACTT+TGG 0.387949 7.2:-84238544 MS.gene057481:CDS
ACACAATTGGGGACAAAATT+GGG 0.394310 7.2:-84238613 MS.gene057481:CDS
ACGAGTGATGGAAAGACTTT+GGG 0.409816 7.2:-84238543 MS.gene057481:CDS
GCAATTTGGTCAGACTTATG+AGG 0.412316 7.2:-84238493 MS.gene057481:CDS
GTGTTTAATGTTGCCAATGC+TGG 0.436563 7.2:-84238693 MS.gene057481:CDS
ATTGAATAGAGCAGTGCTTA+AGG 0.445050 7.2:+84239019 None:intergenic
TTTGTTGCAGTCACTGTGAT+TGG 0.450176 7.2:+84238921 None:intergenic
GGTGTTAGGTTTGAACTCAA+TGG 0.472314 7.2:-84238741 MS.gene057481:CDS
TTCAATAATGGATTTACTTG+TGG 0.476193 7.2:-84239002 MS.gene057481:CDS
CTCGTACAAGCCATGTCAAA+TGG 0.478409 7.2:-84239449 MS.gene057481:CDS
GAGGGCTTGTTGTAATTTGG+AGG 0.483591 7.2:+84238891 None:intergenic
TTTGTGTAAACGACCCTCAA+TGG 0.501152 7.2:-84238962 MS.gene057481:CDS
TTTCTTGTTACCACGAGTGA+TGG 0.501449 7.2:-84238555 MS.gene057481:CDS
CAATTTGGTCAGACTTATGA+GGG 0.506118 7.2:-84238492 MS.gene057481:CDS
CGTGTTCCATGTGTTAAAAG+TGG 0.514431 7.2:-84238765 MS.gene057481:CDS
TTTCTCATGTTCGTGTTAGA+GGG 0.514891 7.2:-84238665 MS.gene057481:CDS
AGCTTTGTAATATGCAATAG+AGG 0.516905 7.2:+84238812 None:intergenic
TCTATTGCATATTACAAAGC+TGG 0.519391 7.2:-84238810 MS.gene057481:CDS
ATGAGAAACATCACCAGCAT+TGG 0.529328 7.2:+84238680 None:intergenic
TAGAGCAGTGCTTAAGGCTG+TGG 0.532284 7.2:+84239025 None:intergenic
GTGTTCCATGTGTTAAAAGT+GGG 0.535105 7.2:-84238764 MS.gene057481:CDS
TAAGTCAATGCCATTTGACA+TGG 0.550841 7.2:+84239439 None:intergenic
CAATGGTGCATAAAAGATGC+AGG 0.555670 7.2:-84238945 MS.gene057481:CDS
GTGTGACATCGAAATCCAAC+CGG 0.556542 7.2:+84238632 None:intergenic
TGGGGACAAAATTGGGACAC+TGG 0.584116 7.2:-84238606 MS.gene057481:CDS
CAATTCGAAGGAGCAACGAA+CGG 0.589796 7.2:+84238516 None:intergenic
GACACTGGAGTGAATTTGGT+AGG 0.601480 7.2:-84238591 MS.gene057481:CDS
ATTTCGATGTCACACAATTG+GGG 0.604167 7.2:-84238624 MS.gene057481:CDS
GAACACGTTTATACTTAACT+GGG 0.611144 7.2:+84238781 None:intergenic
ACGCATGGTTGCAGCACCAG+AGG 0.612142 7.2:+84239379 None:intergenic
GTTAGAGGGTCTAAGACGAC+CGG 0.612512 7.2:-84238651 MS.gene057481:CDS
TGACCAAATTGCCAATTCGA+AGG 0.618113 7.2:+84238504 None:intergenic
GAGGGTCTAAGACGACCGGT+TGG 0.633449 7.2:-84238647 MS.gene057481:CDS
CATTTGACATGGCTTGTACG+AGG 0.634199 7.2:+84239450 None:intergenic
TATGGTGATCTCTTCAAACA+AGG 0.652392 7.2:-84239062 MS.gene057481:CDS
CAAAGTCTTTCCATCACTCG+TGG 0.658912 7.2:+84238545 None:intergenic
TGTTCCATGTGTTAAAAGTG+GGG 0.697172 7.2:-84238763 MS.gene057481:CDS
GTTCCATGTGTTAAAAGTGG+GGG 0.697509 7.2:-84238762 MS.gene057481:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATATCATAAAAAATAACT+TGG + chr7.2:84238638-84238657 None:intergenic 15.0%
!! TCATATTATGATATAATGTA+TGG - chr7.2:84238859-84238878 MS.gene057481:CDS 15.0%
!!! GATTTTTCTTAATTTTGTGT+GGG + chr7.2:84238814-84238833 None:intergenic 20.0%
!!! TGATTTTTCTTAATTTTGTG+TGG + chr7.2:84238815-84238834 None:intergenic 20.0%
! ACCAAGACAATCAAAAAATA+AGG + chr7.2:84239262-84239281 None:intergenic 25.0%
! ATGGTATTTAATTATGCAGA+GGG - chr7.2:84238878-84238897 MS.gene057481:CDS 25.0%
! TATGGTATTTAATTATGCAG+AGG - chr7.2:84238877-84238896 MS.gene057481:CDS 25.0%
!! AGGTGAACATTTTATAACTT+AGG + chr7.2:84239144-84239163 None:intergenic 25.0%
!!! TCCTTATTTTTTGATTGTCT+TGG - chr7.2:84239258-84239277 MS.gene057481:intron 25.0%
!!! TTCAATAATGGATTTACTTG+TGG - chr7.2:84238971-84238990 MS.gene057481:CDS 25.0%
AAAATAACTTGGCAAGAAGA+AGG + chr7.2:84238627-84238646 None:intergenic 30.0%
AGCATCATTAAAAAGGTGAA+AGG + chr7.2:84238503-84238522 None:intergenic 30.0%
GAACACGTTTATACTTAACT+GGG + chr7.2:84239195-84239214 None:intergenic 30.0%
TCTATTGCATATTACAAAGC+TGG - chr7.2:84239163-84239182 MS.gene057481:intron 30.0%
TGGTATTTAATTATGCAGAG+GGG - chr7.2:84238879-84238898 MS.gene057481:CDS 30.0%
! AGCTTTGTAATATGCAATAG+AGG + chr7.2:84239164-84239183 None:intergenic 30.0%
!! CAAATGGCATTGACTTAAAT+TGG - chr7.2:84238540-84238559 MS.gene057481:CDS 30.0%
!!! CTCAAATTTTTCGGGATAAA+TGG + chr7.2:84238790-84238809 None:intergenic 30.0%
!!! TTAGGTCAAAGTGTTTTAGT+GGG + chr7.2:84239126-84239145 None:intergenic 30.0%
ACACAATTGGGGACAAAATT+GGG - chr7.2:84239360-84239379 MS.gene057481:intron 35.0%
AGCACTGCTCTATTCAATAA+TGG - chr7.2:84238959-84238978 MS.gene057481:CDS 35.0%
ATTGAATAGAGCAGTGCTTA+AGG + chr7.2:84238957-84238976 None:intergenic 35.0%
ATTTCGATGTCACACAATTG+GGG - chr7.2:84239349-84239368 MS.gene057481:intron 35.0%
CAATTTGGTCAGACTTATGA+GGG - chr7.2:84239481-84239500 MS.gene057481:CDS 35.0%
GATCTCTTCAAACAAGGATA+TGG - chr7.2:84238917-84238936 MS.gene057481:CDS 35.0%
GATTTCGATGTCACACAATT+GGG - chr7.2:84239348-84239367 MS.gene057481:intron 35.0%
GGAACACGTTTATACTTAAC+TGG + chr7.2:84239196-84239215 None:intergenic 35.0%
GGTATTTAATTATGCAGAGG+GGG - chr7.2:84238880-84238899 MS.gene057481:CDS 35.0%
GTGTTCCATGTGTTAAAAGT+GGG - chr7.2:84239209-84239228 MS.gene057481:intron 35.0%
TATGGTGATCTCTTCAAACA+AGG - chr7.2:84238911-84238930 MS.gene057481:CDS 35.0%
TGTTCCATGTGTTAAAAGTG+GGG - chr7.2:84239210-84239229 MS.gene057481:intron 35.0%
TTTCTCATGTTCGTGTTAGA+GGG - chr7.2:84239308-84239327 MS.gene057481:intron 35.0%
! CATCTTTTATGCACCATTGA+GGG + chr7.2:84239027-84239046 None:intergenic 35.0%
! GGATTACACCAATTTTCAGA+GGG + chr7.2:84239103-84239122 None:intergenic 35.0%
! TAAGTCAATGCCATTTGACA+TGG + chr7.2:84238537-84238556 None:intergenic 35.0%
! TGTGTGGGACTCAAATTTTT+CGG + chr7.2:84238799-84238818 None:intergenic 35.0%
!! CTTAGGTCAAAGTGTTTTAG+TGG + chr7.2:84239127-84239146 None:intergenic 35.0%
!! TACGAGGAGCATCATTAAAA+AGG + chr7.2:84238510-84238529 None:intergenic 35.0%
!!! TAGGTCAAAGTGTTTTAGTG+GGG + chr7.2:84239125-84239144 None:intergenic 35.0%
ATGAGAAACATCACCAGCAT+TGG + chr7.2:84239296-84239315 None:intergenic 40.0%
CAATGGTGCATAAAAGATGC+AGG - chr7.2:84239028-84239047 MS.gene057481:CDS 40.0%
CACACAATTGGGGACAAAAT+TGG - chr7.2:84239359-84239378 MS.gene057481:intron 40.0%
CGTGTTCCATGTGTTAAAAG+TGG - chr7.2:84239208-84239227 MS.gene057481:intron 40.0%
GAAGAAGGAAAACTTACGCA+TGG + chr7.2:84238612-84238631 None:intergenic 40.0%
GCAATTTGGTCAGACTTATG+AGG - chr7.2:84239480-84239499 MS.gene057481:CDS 40.0%
GGATTTCGATGTCACACAAT+TGG - chr7.2:84239347-84239366 MS.gene057481:intron 40.0%
GGTGTTAGGTTTGAACTCAA+TGG - chr7.2:84239232-84239251 MS.gene057481:intron 40.0%
GTGTTTAATGTTGCCAATGC+TGG - chr7.2:84239280-84239299 MS.gene057481:intron 40.0%
GTTCCATGTGTTAAAAGTGG+GGG - chr7.2:84239211-84239230 MS.gene057481:intron 40.0%
GTTTCTCATGTTCGTGTTAG+AGG - chr7.2:84239307-84239326 MS.gene057481:intron 40.0%
TGACCAAATTGCCAATTCGA+AGG + chr7.2:84239472-84239491 None:intergenic 40.0%
TTTCTTGTTACCACGAGTGA+TGG - chr7.2:84239418-84239437 MS.gene057481:CDS 40.0%
TTTGTGTAAACGACCCTCAA+TGG - chr7.2:84239011-84239030 MS.gene057481:CDS 40.0%
TTTGTTGCAGTCACTGTGAT+TGG + chr7.2:84239055-84239074 None:intergenic 40.0%
! ACAACAAGCCCTCTGAAAAT+TGG - chr7.2:84239092-84239111 MS.gene057481:intron 40.0%
! ACGAGTGATGGAAAGACTTT+GGG - chr7.2:84239430-84239449 MS.gene057481:CDS 40.0%
! GATGCTCATGCAACCTTTTA+TGG - chr7.2:84238566-84238585 MS.gene057481:CDS 40.0%
! GCATCTTTTATGCACCATTG+AGG + chr7.2:84239028-84239047 None:intergenic 40.0%
! GGGATTACACCAATTTTCAG+AGG + chr7.2:84239104-84239123 None:intergenic 40.0%
! GTGTGGGACTCAAATTTTTC+GGG + chr7.2:84238798-84238817 None:intergenic 40.0%
!! TCAGAGGGCTTGTTGTAATT+TGG + chr7.2:84239088-84239107 None:intergenic 40.0%
!!! AGGTCAAAGTGTTTTAGTGG+GGG + chr7.2:84239124-84239143 None:intergenic 40.0%
CAAAGTCTTTCCATCACTCG+TGG + chr7.2:84239431-84239450 None:intergenic 45.0%
CAATTCGAAGGAGCAACGAA+CGG + chr7.2:84239460-84239479 None:intergenic 45.0%
CTCGTACAAGCCATGTCAAA+TGG - chr7.2:84238524-84238543 MS.gene057481:CDS 45.0%
GACACTGGAGTGAATTTGGT+AGG - chr7.2:84239382-84239401 MS.gene057481:CDS 45.0%
GCTCCTTCGAATTGGCAATT+TGG - chr7.2:84239466-84239485 MS.gene057481:CDS 45.0%
GTGTGACATCGAAATCCAAC+CGG + chr7.2:84239344-84239363 None:intergenic 45.0%
TTGGGACACTGGAGTGAATT+TGG - chr7.2:84239378-84239397 MS.gene057481:intron 45.0%
! CACGAGTGATGGAAAGACTT+TGG - chr7.2:84239429-84239448 MS.gene057481:CDS 45.0%
! CATTTGACATGGCTTGTACG+AGG + chr7.2:84238526-84238545 None:intergenic 45.0%
!! ACACCCCCACTTTTAACACA+TGG + chr7.2:84239217-84239236 None:intergenic 45.0%
!! GAGGGCTTGTTGTAATTTGG+AGG + chr7.2:84239085-84239104 None:intergenic 45.0%
!! GTGTTAAAAGTGGGGGTGTT+AGG - chr7.2:84239218-84239237 MS.gene057481:intron 45.0%
AATTATGCAGAGGGGGCTTG+TGG - chr7.2:84238887-84238906 MS.gene057481:CDS 50.0%
CGTTCGTTGCTCCTTCGAAT+TGG - chr7.2:84239458-84239477 MS.gene057481:CDS 50.0%
TAGAGCAGTGCTTAAGGCTG+TGG + chr7.2:84238951-84238970 None:intergenic 50.0%
TGGGGACAAAATTGGGACAC+TGG - chr7.2:84239367-84239386 MS.gene057481:intron 50.0%
! GTTAGAGGGTCTAAGACGAC+CGG - chr7.2:84239322-84239341 MS.gene057481:intron 50.0%
!! ACCAGAGGCGTCACCATAAA+AGG + chr7.2:84238582-84238601 None:intergenic 50.0%
!! ACCTTTTATGGTGACGCCTC+TGG - chr7.2:84238578-84238597 MS.gene057481:CDS 50.0%
ACGCATGGTTGCAGCACCAG+AGG + chr7.2:84238597-84238616 None:intergenic 60.0%
GCAGAGGGGGCTTGTGGTTA+TGG - chr7.2:84238893-84238912 MS.gene057481:CDS 60.0%
! GAGGGTCTAAGACGACCGGT+TGG - chr7.2:84239326-84239345 MS.gene057481:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 84238476 84239519 84238476 ID=MS.gene057481
chr7.2 mRNA 84238476 84239519 84238476 ID=MS.gene057481.t1;Parent=MS.gene057481
chr7.2 exon 84239381 84239519 84239381 ID=MS.gene057481.t1.exon1;Parent=MS.gene057481.t1
chr7.2 CDS 84239381 84239519 84239381 ID=cds.MS.gene057481.t1;Parent=MS.gene057481.t1
chr7.2 exon 84238476 84239098 84238476 ID=MS.gene057481.t1.exon2;Parent=MS.gene057481.t1
chr7.2 CDS 84238476 84239098 84238476 ID=cds.MS.gene057481.t1;Parent=MS.gene057481.t1
Gene Sequence

>MS.gene057481

ATGGCTTTATCTCACTCTTTGGTTCCTTTCACCTTTTTAATGATGCTCCTCGTACAAGCCATGTCAAATGGCATTGACTTAAATTGGTACGATGCTCATGCAACCTTTTATGGTGACGCCTCTGGTGCTGCAACCATGCGTAAGTTTTCCTTCTTCTTGCCAAGTTATTTTTTATGATATGTAAGTCTCAGATAGATAAAGATCAGACGACTCATATTTTAATTTTTCTTTAAAGTTAATTGATATTTTAAAATTAATATATAAGTTGTCTAATATTCATTTGAATTTGAGATCACAACTATGCATGATTTCCATTTATCCCGAAAAATTTGAGTCCCACACAAAATTAAGAAAAATCATTTTTAATTAATTTTTTTCTTTGTTCATATTATGATATAATGTATGGTATTTAATTATGCAGAGGGGGCTTGTGGTTATGGTGATCTCTTCAAACAAGGATATGGACTTGAGACCACAGCCTTAAGCACTGCTCTATTCAATAATGGATTTACTTGTGGTGCATGTTTTCAAATAATTTGTGTAAACGACCCTCAATGGTGCATAAAAGATGCAGGACCAATCACAGTGACTGCAACAAATTTTTGTCCTCCAAATTACAACAAGCCCTCTGAAAATTGGTGTAATCCCCCACTAAAACACTTTGACCTAAGTTATAAAATGTTCACCTCTATTGCATATTACAAAGCTGGTATCATCCCAGTTAAGTATAAACGTGTTCCATGTGTTAAAAGTGGGGGTGTTAGGTTTGAACTCAATGGAAATCCTTATTTTTTGATTGTCTTGGTGTTTAATGTTGCCAATGCTGGTGATGTTTCTCATGTTCGTGTTAGAGGGTCTAAGACGACCGGTTGGATTTCGATGTCACACAATTGGGGACAAAATTGGGACACTGGAGTGAATTTGGTAGGACAAAGCTTGTCATTTCTTGTTACCACGAGTGATGGAAAGACTTTGGGTTTTCCGTTCGTTGCTCCTTCGAATTGGCAATTTGGTCAGACTTATGAGGGCAAGCAAAATTTTTAG
Protein sequence

>MS.gene057481.t1

MALSHSLVPFTFLMMLLVQAMSNGIDLNWYDAHATFYGDASGAATMQGACGYGDLFKQGYGLETTALSTALFNNGFTCGACFQIICVNDPQWCIKDAGPITVTATNFCPPNYNKPSENWCNPPLKHFDLSYKMFTSIAYYKAGIIPVKYKRVPCVKSGGVRFELNGNPYFLIVLVFNVANAGDVSHVRVRGSKTTGWISMSHNWGQNWDTGVNLVGQSLSFLVTTSDGKTLGFPFVAPSNWQFGQTYEGKQNF