Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057726.t1 | XP_013456507.1 | 96.2 | 286 | 9 | 1 | 1 | 286 | 1 | 284 | 3.30E-130 | 474.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057726.t1 | A0A072UNB3 | 96.2 | 286 | 9 | 1 | 1 | 286 | 1 | 284 | 2.4e-130 | 474.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene032192 | MS.gene057726 | PPI |
| MS.gene98743 | MS.gene057726 | PPI |
| MS.gene051997 | MS.gene057726 | PPI |
| MS.gene85263 | MS.gene057726 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057726.t1 | MTR_4g074120 | 97.203 | 286 | 6 | 2 | 1 | 286 | 1 | 284 | 0.0 | 575 |
| MS.gene057726.t1 | MTR_4g074120 | 96.471 | 255 | 7 | 2 | 1 | 255 | 1 | 253 | 0.0 | 509 |
| MS.gene057726.t1 | MTR_1g035700 | 62.630 | 289 | 100 | 4 | 1 | 286 | 1 | 284 | 8.76e-126 | 360 |
| MS.gene057726.t1 | MTR_1g035700 | 62.630 | 289 | 100 | 4 | 1 | 286 | 1 | 284 | 6.88e-125 | 360 |
| MS.gene057726.t1 | MTR_1g035700 | 61.149 | 296 | 100 | 5 | 1 | 286 | 1 | 291 | 7.14e-123 | 353 |
| MS.gene057726.t1 | MTR_2g099155 | 44.541 | 229 | 109 | 4 | 72 | 283 | 6 | 233 | 5.89e-59 | 188 |
| MS.gene057726.t1 | MTR_2g099155 | 43.096 | 239 | 108 | 5 | 72 | 283 | 6 | 243 | 3.10e-56 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057726.t1 | AT1G60670 | 45.703 | 256 | 112 | 6 | 37 | 286 | 1 | 235 | 1.96e-73 | 226 |
| MS.gene057726.t1 | AT1G60670 | 45.703 | 256 | 112 | 6 | 37 | 286 | 1 | 235 | 2.58e-73 | 225 |
| MS.gene057726.t1 | AT1G60670 | 44.531 | 256 | 110 | 6 | 37 | 286 | 1 | 230 | 5.20e-70 | 217 |
| MS.gene057726.t1 | AT1G10820 | 45.418 | 251 | 124 | 5 | 37 | 286 | 1 | 239 | 5.73e-66 | 207 |
| MS.gene057726.t1 | AT1G10820 | 47.982 | 223 | 102 | 3 | 64 | 286 | 5 | 213 | 5.10e-65 | 203 |
| MS.gene057726.t1 | AT3G07565 | 42.466 | 219 | 119 | 2 | 68 | 283 | 37 | 251 | 1.84e-59 | 190 |
| MS.gene057726.t1 | AT3G07565 | 42.922 | 219 | 117 | 3 | 68 | 283 | 37 | 250 | 6.60e-59 | 189 |
| MS.gene057726.t1 | AT1G60670 | 41.921 | 229 | 106 | 6 | 37 | 259 | 1 | 208 | 1.41e-56 | 181 |
| MS.gene057726.t1 | AT3G07565 | 40.789 | 228 | 119 | 3 | 68 | 283 | 37 | 260 | 1.53e-56 | 183 |
| MS.gene057726.t1 | AT1G68160 | 42.446 | 278 | 137 | 3 | 1 | 278 | 3 | 257 | 8.09e-50 | 166 |
| MS.gene057726.t1 | AT1G60670 | 41.667 | 204 | 92 | 6 | 37 | 234 | 1 | 183 | 6.52e-48 | 159 |
| MS.gene057726.t1 | AT3G07565 | 40.157 | 127 | 68 | 3 | 68 | 191 | 37 | 158 | 9.79e-25 | 98.6 |
| MS.gene057726.t1 | AT2G43470 | 32.292 | 192 | 101 | 8 | 95 | 277 | 24 | 195 | 2.02e-17 | 79.3 |
Find 67 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCCAATGGGTAATTATTT+TGG | 0.089118 | 4.4:+36014868 | MS.gene057726:CDS |
| CTTCTTGTTGATTCAGTTCC+AGG | 0.161351 | 4.4:+36015003 | MS.gene057726:CDS |
| TTTGGGTTTAGTAGTTCTTC+TGG | 0.191137 | 4.4:+36014886 | MS.gene057726:CDS |
| TCTTGCAAGATCCTCGTTAA+TGG | 0.242729 | 4.4:-36018560 | None:intergenic |
| CACCTTGTACGTCGATAAAT+TGG | 0.260162 | 4.4:-36017776 | None:intergenic |
| CTGCTCCATGAGTTGCTTCA+TGG | 0.279827 | 4.4:-36017725 | None:intergenic |
| CTTCATGATACTTGGTTCAT+TGG | 0.301764 | 4.4:-36016047 | None:intergenic |
| CAACAGGCAGTGGCGGCATT+TGG | 0.339764 | 4.4:-36018537 | None:intergenic |
| TTCTCACATGTCACGCGTTA+TGG | 0.353724 | 4.4:+36017446 | MS.gene057726:CDS |
| GAACTTACCTAAGTTCTATT+AGG | 0.367237 | 4.4:-36018592 | None:intergenic |
| GGTGCTGGTGGTAATTCAGC+TGG | 0.372714 | 4.4:+36014970 | MS.gene057726:CDS |
| TGCTCCATGAGTTGCTTCAT+GGG | 0.376053 | 4.4:-36017724 | None:intergenic |
| TCTTCTGGGATGGTATATTC+TGG | 0.384527 | 4.4:+36014901 | MS.gene057726:CDS |
| TTGGGTTTAGTAGTTCTTCT+GGG | 0.387168 | 4.4:+36014887 | MS.gene057726:CDS |
| TTTCCCAAACCGTGTTCATC+TGG | 0.393824 | 4.4:-36016870 | None:intergenic |
| CTGTTCGCGATGTTGCTTTG+AGG | 0.408201 | 4.4:+36016104 | MS.gene057726:CDS |
| GAAACCAGATGAACACGGTT+TGG | 0.411046 | 4.4:+36016866 | MS.gene057726:CDS |
| AAACCAGATGAACACGGTTT+GGG | 0.425765 | 4.4:+36016867 | MS.gene057726:CDS |
| TTCTTGTTGATTCAGTTCCA+GGG | 0.434162 | 4.4:+36015004 | MS.gene057726:CDS |
| TTGATGTACTTCATGATACT+TGG | 0.436387 | 4.4:-36016055 | None:intergenic |
| AGCACAGTCAAATTTGCATT+CGG | 0.444424 | 4.4:+36017398 | MS.gene057726:CDS |
| AGATCCTCGTTAATGGCAAC+AGG | 0.447502 | 4.4:-36018553 | None:intergenic |
| ACCCAAAATAATTACCCATT+GGG | 0.452792 | 4.4:-36014870 | None:intergenic |
| GAGAATATGACCCCATGCTT+GGG | 0.454600 | 4.4:-36017428 | None:intergenic |
| AACCCAAAATAATTACCCAT+TGG | 0.481651 | 4.4:-36014871 | None:intergenic |
| GTTTAGTAGTTCTTCTGGGA+TGG | 0.481723 | 4.4:+36014891 | MS.gene057726:CDS |
| GCGATGTTGCTTTGAGGTGT+AGG | 0.484163 | 4.4:+36016110 | MS.gene057726:CDS |
| GTGTATGTTCAGGAATTTGT+GGG | 0.484238 | 4.4:+36017701 | MS.gene057726:intron |
| GTTGTAAGTCAAGGTGGTGC+TGG | 0.490288 | 4.4:+36014955 | MS.gene057726:CDS |
| TCGTTAATGGCAACAGGCAG+TGG | 0.497673 | 4.4:-36018547 | None:intergenic |
| ATCCACATACTCGTTTAGAA+TGG | 0.498102 | 4.4:-36018413 | None:intergenic |
| GGCATTTGGCTCATAATGCC+AGG | 0.504404 | 4.4:-36018523 | None:intergenic |
| GTGCTGGTGGTAATTCAGCT+GGG | 0.507186 | 4.4:+36014971 | MS.gene057726:CDS |
| TGAGAATATGACCCCATGCT+TGG | 0.517631 | 4.4:-36017429 | None:intergenic |
| TCTTGATGAACAGTACAGAT+TGG | 0.528915 | 4.4:+36015062 | MS.gene057726:CDS |
| CCTGTGTCATGCTTAAGCCC+TGG | 0.552020 | 4.4:-36015021 | None:intergenic |
| ATGTCAGAGATGGTCCCAAT+GGG | 0.554489 | 4.4:+36014856 | MS.gene057726:CDS |
| TGTGTATGTTCAGGAATTTG+TGG | 0.554772 | 4.4:+36017700 | MS.gene057726:intron |
| TGAACAGTACAGATTGGAAG+AGG | 0.560367 | 4.4:+36015068 | MS.gene057726:CDS |
| ACACAGGGTTGGCTGTTGAA+TGG | 0.567227 | 4.4:+36015037 | MS.gene057726:CDS |
| TGGGCCCATGAAGCAACTCA+TGG | 0.567392 | 4.4:+36017720 | MS.gene057726:CDS |
| CATGTCAGAGATGGTCCCAA+TGG | 0.570192 | 4.4:+36014855 | MS.gene057726:CDS |
| CCAGGGCTTAAGCATGACAC+AGG | 0.572689 | 4.4:+36015021 | MS.gene057726:CDS |
| GCTTCTTCAGGATAAGTCGT+TGG | 0.579374 | 4.4:+36017368 | MS.gene057726:intron |
| AACAACCATGTTGTAAGTCA+AGG | 0.581264 | 4.4:+36014946 | MS.gene057726:CDS |
| TGTGCCTTGTGTGGCAAAAG+AGG | 0.582507 | 4.4:-36018381 | None:intergenic |
| GAATAATAGCATGTCAGAGA+TGG | 0.583965 | 4.4:+36014846 | MS.gene057726:CDS |
| TACCAATTTATCGACGTACA+AGG | 0.592537 | 4.4:+36017774 | MS.gene057726:CDS |
| CACCACCTTGACTTACAACA+TGG | 0.596965 | 4.4:-36014951 | None:intergenic |
| AGTCAACGGACACTATATGA+TGG | 0.610616 | 4.4:+36017474 | MS.gene057726:CDS |
| GCTTAAGCATGACACAGGGT+TGG | 0.613167 | 4.4:+36015026 | MS.gene057726:CDS |
| TGCAGCATGAGTGAGATGCC+TGG | 0.617604 | 4.4:+36018505 | MS.gene057726:intron |
| AATTAATATTGTGCCTTGTG+TGG | 0.630893 | 4.4:-36018390 | None:intergenic |
| ATGTTGCTTTGAGGTGTAGG+TGG | 0.642936 | 4.4:+36016113 | MS.gene057726:CDS |
| AGAATATGACCCCATGCTTG+GGG | 0.646474 | 4.4:-36017427 | None:intergenic |
| TTAATGGCAACAGGCAGTGG+CGG | 0.648108 | 4.4:-36018544 | None:intergenic |
| TGGAGGCAGAGTCAAACAGA+GGG | 0.653189 | 4.4:+36014758 | MS.gene057726:CDS |
| GTAAGTCAAGGTGGTGCTGG+TGG | 0.656921 | 4.4:+36014958 | MS.gene057726:CDS |
| CGAAGGAAACCAGATGAACA+CGG | 0.658324 | 4.4:+36016861 | MS.gene057726:CDS |
| ATGGAGGCAGAGTCAAACAG+AGG | 0.667685 | 4.4:+36014757 | MS.gene057726:CDS |
| GAATATGACCCCATGCTTGG+GGG | 0.678829 | 4.4:-36017426 | None:intergenic |
| GAACAGTACAGATTGGAAGA+GGG | 0.679393 | 4.4:+36015069 | MS.gene057726:CDS |
| CAGGGCTTAAGCATGACACA+GGG | 0.681848 | 4.4:+36015022 | MS.gene057726:CDS |
| AACCATGTTGTAAGTCAAGG+TGG | 0.691347 | 4.4:+36014949 | MS.gene057726:CDS |
| GCGTTATGGAACAAAGTCAA+CGG | 0.697757 | 4.4:+36017460 | MS.gene057726:CDS |
| ACTGCCTGTTGCCATTAACG+AGG | 0.709980 | 4.4:+36018549 | MS.gene057726:CDS |
| CATGCAATATCATTTCAGCA+CGG | 0.730065 | 4.4:+36014817 | MS.gene057726:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATATATTTAATTTTTTA+TGG | - | chr4.4:36017054-36017073 | None:intergenic | 0.0% |
| !! | AATATGATCATTAATTTATA+CGG | - | chr4.4:36018073-36018092 | None:intergenic | 10.0% |
| !! | ATTAAAAAAACTTAAGAAAA+TGG | - | chr4.4:36017509-36017528 | None:intergenic | 10.0% |
| !! | TTATTTATTTATTGCTAATT+TGG | + | chr4.4:36015133-36015152 | MS.gene057726:intron | 10.0% |
| !!! | ATAAATTTCCAATTTTAAAT+GGG | - | chr4.4:36016714-36016733 | None:intergenic | 10.0% |
| !! | ATAACAATCATGAAATTAAA+AGG | - | chr4.4:36016009-36016028 | None:intergenic | 15.0% |
| !! | CTTTAATATGTTATAAGTTA+TGG | + | chr4.4:36016445-36016464 | MS.gene057726:intron | 15.0% |
| !! | TATAATGAAAGATGAAAATT+TGG | - | chr4.4:36018156-36018175 | None:intergenic | 15.0% |
| !! | TTAAAATTGGAAATTTATCA+GGG | + | chr4.4:36016716-36016735 | MS.gene057726:intron | 15.0% |
| !!! | GATAAATTTCCAATTTTAAA+TGG | - | chr4.4:36016715-36016734 | None:intergenic | 15.0% |
| !!! | TAAATTTCCAATTTTAAATG+GGG | - | chr4.4:36016713-36016732 | None:intergenic | 15.0% |
| !!! | TAAGTTGAACAATAAATTTA+AGG | + | chr4.4:36015367-36015386 | MS.gene057726:intron | 15.0% |
| !!! | TTATTTTCTTAGTTTATGTT+TGG | - | chr4.4:36015526-36015545 | None:intergenic | 15.0% |
| !!! | TTTAAAATTGGAAATTTATC+AGG | + | chr4.4:36016715-36016734 | MS.gene057726:intron | 15.0% |
| !! | ACACACACTTAAATTATTAT+CGG | - | chr4.4:36015209-36015228 | None:intergenic | 20.0% |
| !! | ATAAAAACAAATGACTTACT+TGG | - | chr4.4:36015100-36015119 | None:intergenic | 20.0% |
| !! | ATAATTGCAACATATTAAAG+TGG | - | chr4.4:36016338-36016357 | None:intergenic | 20.0% |
| !! | ATTTGTAACAACTAATTTAG+TGG | + | chr4.4:36017893-36017912 | MS.gene057726:intron | 20.0% |
| !! | CTTGTATTCAATAATTTGAT+TGG | + | chr4.4:36015853-36015872 | MS.gene057726:intron | 20.0% |
| !! | TAATGAAGTTTACTTGTATT+TGG | + | chr4.4:36018439-36018458 | MS.gene057726:intron | 20.0% |
| !! | TATTTAATGAAATGTGGAAT+TGG | - | chr4.4:36017678-36017697 | None:intergenic | 20.0% |
| !! | TTGAATCAATTAATGTCTTT+AGG | + | chr4.4:36017307-36017326 | MS.gene057726:intron | 20.0% |
| !! | TTGATTCAATATATCAAAAC+TGG | - | chr4.4:36017296-36017315 | None:intergenic | 20.0% |
| !!! | AAATTTCCAATTTTAAATGG+GGG | - | chr4.4:36016712-36016731 | None:intergenic | 20.0% |
| !!! | AGAACCTAAATTATTTTCAT+GGG | - | chr4.4:36015664-36015683 | None:intergenic | 20.0% |
| !!! | AGATTCTATAAAATTGATTC+TGG | + | chr4.4:36015290-36015309 | MS.gene057726:intron | 20.0% |
| !!! | AGTTTTGTTTTTGTAAATAC+TGG | + | chr4.4:36017823-36017842 | MS.gene057726:intron | 20.0% |
| !!! | CAGAAAAGTATGTAAAATTT+TGG | + | chr4.4:36016905-36016924 | MS.gene057726:intron | 20.0% |
| !!! | TTCAACTTACTTTTATATGA+AGG | - | chr4.4:36015356-36015375 | None:intergenic | 20.0% |
| !!! | TTTAGAATTCAAATTTGTAC+TGG | - | chr4.4:36016305-36016324 | None:intergenic | 20.0% |
| ! | AACAAAACTGAAACATATGA+TGG | - | chr4.4:36017812-36017831 | None:intergenic | 25.0% |
| ! | AATGAAGAAAATAAAGCTGA+TGG | + | chr4.4:36016541-36016560 | MS.gene057726:intron | 25.0% |
| ! | AATTTGAACATTTCCTAAAC+AGG | - | chr4.4:36017982-36018001 | None:intergenic | 25.0% |
| ! | ATGAAACACAACCTTTAAAT+AGG | - | chr4.4:36016631-36016650 | None:intergenic | 25.0% |
| ! | CAACTTGTAATCCTATTTAA+AGG | + | chr4.4:36016617-36016636 | MS.gene057726:intron | 25.0% |
| ! | CACAAGTATTTAATGAAATG+TGG | - | chr4.4:36017684-36017703 | None:intergenic | 25.0% |
| ! | CTTTCCCATGAAAATAATTT+AGG | + | chr4.4:36015657-36015676 | MS.gene057726:intron | 25.0% |
| ! | GAAAGATATCATATTCACAT+TGG | + | chr4.4:36018015-36018034 | MS.gene057726:intron | 25.0% |
| ! | GAGTTACTTATGTTTAAGTA+AGG | + | chr4.4:36015899-36015918 | MS.gene057726:intron | 25.0% |
| ! | TATCTAAGTTCTTTCAGTTA+TGG | + | chr4.4:36018259-36018278 | MS.gene057726:intron | 25.0% |
| ! | TATTGTCTGTCTAATTACTA+TGG | + | chr4.4:36018089-36018108 | MS.gene057726:intron | 25.0% |
| ! | TTAAATACTTGTGTATGTTC+AGG | + | chr4.4:36017691-36017710 | MS.gene057726:intron | 25.0% |
| ! | TTGTGGATAATATGTTATAC+TGG | - | chr4.4:36016743-36016762 | None:intergenic | 25.0% |
| ! | TTTCATAGATCTTAAAACTG+AGG | - | chr4.4:36017078-36017097 | None:intergenic | 25.0% |
| !! | AGGCTAAAATTCAATTTTAG+CGG | + | chr4.4:36015387-36015406 | MS.gene057726:intron | 25.0% |
| !! | GAGAACCTAAATTATTTTCA+TGG | - | chr4.4:36015665-36015684 | None:intergenic | 25.0% |
| !!! | ATGCTTTAGAAACTATAAAG+TGG | - | chr4.4:36016394-36016413 | None:intergenic | 25.0% |
| !!! | TATGAAGTATTGCATTGAAA+TGG | + | chr4.4:36018177-36018196 | MS.gene057726:intron | 25.0% |
| !!! | TGTGCTAAATTTGTTTTTCA+TGG | + | chr4.4:36015924-36015943 | MS.gene057726:intron | 25.0% |
| !!! | TTCACTTTTACACTTGTTTT+CGG | + | chr4.4:36016799-36016818 | MS.gene057726:intron | 25.0% |
| AAAACTGGAATCCCATTTAT+GGG | - | chr4.4:36017281-36017300 | None:intergenic | 30.0% | |
| AACCAACTTAAAACATTAGG+AGG | - | chr4.4:36017012-36017031 | None:intergenic | 30.0% | |
| AACCCAAAATAATTACCCAT+TGG | - | chr4.4:36014874-36014893 | None:intergenic | 30.0% | |
| AACCTAGTTAACTACTGATA+TGG | - | chr4.4:36018207-36018226 | None:intergenic | 30.0% | |
| AATTAATATTGTGCCTTGTG+TGG | - | chr4.4:36018393-36018412 | None:intergenic | 30.0% | |
| ACCCAAAATAATTACCCATT+GGG | - | chr4.4:36014873-36014892 | None:intergenic | 30.0% | |
| ACCTAGTTAACTACTGATAT+GGG | - | chr4.4:36018206-36018225 | None:intergenic | 30.0% | |
| AGATGTTCCAAGTTTGTAAA+AGG | - | chr4.4:36017868-36017887 | None:intergenic | 30.0% | |
| AGCATTAAACTATGTACATC+GGG | - | chr4.4:36016172-36016191 | None:intergenic | 30.0% | |
| ATAAGTTATGGTGATATCAG+TGG | + | chr4.4:36016457-36016476 | MS.gene057726:intron | 30.0% | |
| CAAAGAAAACAATACTTGGT+AGG | - | chr4.4:36015833-36015852 | None:intergenic | 30.0% | |
| CAAGCAAAGAAAACAATACT+TGG | - | chr4.4:36015837-36015856 | None:intergenic | 30.0% | |
| CAGAACCAACTTAAAACATT+AGG | - | chr4.4:36017015-36017034 | None:intergenic | 30.0% | |
| CAGCATTAAACTATGTACAT+CGG | - | chr4.4:36016173-36016192 | None:intergenic | 30.0% | |
| CTCTGCAAAAATGGTTTAAA+CGG | - | chr4.4:36016837-36016856 | None:intergenic | 30.0% | |
| GCATATTCAAGTGACTTTAA+TGG | - | chr4.4:36016229-36016248 | None:intergenic | 30.0% | |
| TAAAACATTAGGAGGAGAAT+CGG | - | chr4.4:36017004-36017023 | None:intergenic | 30.0% | |
| TGAAAGTTGAATATGCATAG+TGG | + | chr4.4:36016263-36016282 | MS.gene057726:intron | 30.0% | |
| TGCAAATTGAATATGCATAG+TGG | + | chr4.4:36016363-36016382 | MS.gene057726:intron | 30.0% | |
| TGGCTAAGTATAAATACATG+CGG | + | chr4.4:36017913-36017932 | MS.gene057726:intron | 30.0% | |
| TTATGTTGCATCCCATAAAT+GGG | + | chr4.4:36017267-36017286 | MS.gene057726:intron | 30.0% | |
| TTGATGTACTTCATGATACT+TGG | - | chr4.4:36016058-36016077 | None:intergenic | 30.0% | |
| ! | AATTTTAAATGGGGGAGTAA+AGG | - | chr4.4:36016704-36016723 | None:intergenic | 30.0% |
| ! | AATTTTACCTCCTTAGAAAG+TGG | + | chr4.4:36015498-36015517 | MS.gene057726:intron | 30.0% |
| ! | GATTGATTCTTATCCTGTTT+AGG | + | chr4.4:36017966-36017985 | MS.gene057726:intron | 30.0% |
| ! | TCCCAATGGGTAATTATTTT+GGG | + | chr4.4:36014869-36014888 | MS.gene057726:CDS | 30.0% |
| ! | TCTAATTTGAAGCTAGTGTT+TGG | - | chr4.4:36015421-36015440 | None:intergenic | 30.0% |
| ! | TTTACTCCCCCATTTAAAAT+TGG | + | chr4.4:36016703-36016722 | MS.gene057726:intron | 30.0% |
| ! | TTTTCGTCCTTTTACAAACT+TGG | + | chr4.4:36017858-36017877 | MS.gene057726:intron | 30.0% |
| !! | GTGCACAATTTTCATTTTTG+TGG | - | chr4.4:36016760-36016779 | None:intergenic | 30.0% |
| !! | TGGTAGGTAGTATTTTTAAG+TGG | - | chr4.4:36015817-36015836 | None:intergenic | 30.0% |
| !!! | GGTAGGTAGTATTTTTAAGT+GGG | - | chr4.4:36015816-36015835 | None:intergenic | 30.0% |
| AACAACCATGTTGTAAGTCA+AGG | + | chr4.4:36014946-36014965 | MS.gene057726:CDS | 35.0% | |
| AAGCTGATGGAACTTTCAAT+TGG | + | chr4.4:36016554-36016573 | MS.gene057726:intron | 35.0% | |
| AATTTGTACTGGACTCAAAG+TGG | - | chr4.4:36016294-36016313 | None:intergenic | 35.0% | |
| ACAGAAAATAAGTTGCCATG+TGG | - | chr4.4:36015634-36015653 | None:intergenic | 35.0% | |
| ACATCGGGAAAATTGTTGAA+AGG | - | chr4.4:36016157-36016176 | None:intergenic | 35.0% | |
| AGCACAGTCAAATTTGCATT+CGG | + | chr4.4:36017398-36017417 | MS.gene057726:CDS | 35.0% | |
| AGCTGATGGAACTTTCAATT+GGG | + | chr4.4:36016555-36016574 | MS.gene057726:intron | 35.0% | |
| ATCCACATACTCGTTTAGAA+TGG | - | chr4.4:36018416-36018435 | None:intergenic | 35.0% | |
| ATCCACTAGACAATCTATAG+AGG | - | chr4.4:36017946-36017965 | None:intergenic | 35.0% | |
| ATGGTGATATCAGTGGTTAA+AGG | + | chr4.4:36016464-36016483 | MS.gene057726:intron | 35.0% | |
| CAAAACTGGAATCCCATTTA+TGG | - | chr4.4:36017282-36017301 | None:intergenic | 35.0% | |
| CATGCAATATCATTTCAGCA+CGG | + | chr4.4:36014817-36014836 | MS.gene057726:CDS | 35.0% | |
| CTTATGTTGCATCCCATAAA+TGG | + | chr4.4:36017266-36017285 | MS.gene057726:intron | 35.0% | |
| CTTCATGATACTTGGTTCAT+TGG | - | chr4.4:36016050-36016069 | None:intergenic | 35.0% | |
| GAATAATAGCATGTCAGAGA+TGG | + | chr4.4:36014846-36014865 | MS.gene057726:CDS | 35.0% | |
| GAATTGATTGCAAAACAAGG+TGG | - | chr4.4:36015794-36015813 | None:intergenic | 35.0% | |
| GTGTATGTTCAGGAATTTGT+GGG | + | chr4.4:36017701-36017720 | MS.gene057726:intron | 35.0% | |
| TACCAATTTATCGACGTACA+AGG | + | chr4.4:36017774-36017793 | MS.gene057726:CDS | 35.0% | |
| TAGTCCACAGATAAAAAGAC+AGG | - | chr4.4:36015748-36015767 | None:intergenic | 35.0% | |
| TATGCTTGACTATCTTGTCA+AGG | + | chr4.4:36017202-36017221 | MS.gene057726:intron | 35.0% | |
| TCAAGCTCTCATTATGTTTG+CGG | + | chr4.4:36017536-36017555 | MS.gene057726:intron | 35.0% | |
| TCCCATATCAGTAGTTAACT+AGG | + | chr4.4:36018202-36018221 | MS.gene057726:intron | 35.0% | |
| TCTTGATGAACAGTACAGAT+TGG | + | chr4.4:36015062-36015081 | MS.gene057726:CDS | 35.0% | |
| TGGGAATTGATTGCAAAACA+AGG | - | chr4.4:36015797-36015816 | None:intergenic | 35.0% | |
| TGTGTATGTTCAGGAATTTG+TGG | + | chr4.4:36017700-36017719 | MS.gene057726:intron | 35.0% | |
| TGTTTGCGGCTACATTATTT+CGG | + | chr4.4:36017550-36017569 | MS.gene057726:intron | 35.0% | |
| TTAGGTTTCGGTTGTTATCA+CGG | + | chr4.4:36016494-36016513 | MS.gene057726:intron | 35.0% | |
| TTATCACATTACTGGACTCA+TGG | + | chr4.4:36018038-36018057 | MS.gene057726:intron | 35.0% | |
| TTCCATTCTAAACGAGTATG+TGG | + | chr4.4:36018411-36018430 | MS.gene057726:intron | 35.0% | |
| TTGGGTTTAGTAGTTCTTCT+GGG | + | chr4.4:36014887-36014906 | MS.gene057726:CDS | 35.0% | |
| ! | ATGTTTGGTTCCACTTTCTA+AGG | - | chr4.4:36015511-36015530 | None:intergenic | 35.0% |
| ! | ATTTAGGTTCTCTGAATCTG+TGG | + | chr4.4:36015673-36015692 | MS.gene057726:intron | 35.0% |
| ! | CACATTGGTTATCACATTAC+TGG | + | chr4.4:36018030-36018049 | MS.gene057726:intron | 35.0% |
| ! | CTTTCAATTGGGCTAGAATA+TGG | + | chr4.4:36016566-36016585 | MS.gene057726:intron | 35.0% |
| ! | GGAGGTAAAATTGATTTCAG+AGG | - | chr4.4:36015490-36015509 | None:intergenic | 35.0% |
| ! | GTCCCAATGGGTAATTATTT+TGG | + | chr4.4:36014868-36014887 | MS.gene057726:CDS | 35.0% |
| ! | TTTGGGTTTAGTAGTTCTTC+TGG | + | chr4.4:36014886-36014905 | MS.gene057726:CDS | 35.0% |
| !! | CTCCTCCTAATGTTTTAAGT+TGG | + | chr4.4:36017007-36017026 | MS.gene057726:intron | 35.0% |
| !! | CTTCATTTTTCTGCAATTGC+TGG | - | chr4.4:36016528-36016547 | None:intergenic | 35.0% |
| !! | GAAGCATGACTTTAGAATAC+TGG | - | chr4.4:36017353-36017372 | None:intergenic | 35.0% |
| !! | TTCTAAAGTCATGCTTCTTC+AGG | + | chr4.4:36017356-36017375 | MS.gene057726:intron | 35.0% |
| !! | TTCTTGTTGATTCAGTTCCA+GGG | + | chr4.4:36015004-36015023 | MS.gene057726:CDS | 35.0% |
| !!! | AAAGGCAAGGTTTTAGGTTT+CGG | + | chr4.4:36016482-36016501 | MS.gene057726:intron | 35.0% |
| AAACCAGATGAACACGGTTT+GGG | + | chr4.4:36016867-36016886 | MS.gene057726:CDS | 40.0% | |
| AAAGGCAAGGAAGGTTATCT+TGG | - | chr4.4:36016686-36016705 | None:intergenic | 40.0% | |
| AACCATGTTGTAAGTCAAGG+TGG | + | chr4.4:36014949-36014968 | MS.gene057726:CDS | 40.0% | |
| AGGGTTTACATTTGTCCACA+TGG | + | chr4.4:36015616-36015635 | MS.gene057726:intron | 40.0% | |
| AGTCAACGGACACTATATGA+TGG | + | chr4.4:36017474-36017493 | MS.gene057726:CDS | 40.0% | |
| CACCTCTATAGATTGTCTAG+TGG | + | chr4.4:36017941-36017960 | MS.gene057726:intron | 40.0% | |
| CACCTTGTACGTCGATAAAT+TGG | - | chr4.4:36017779-36017798 | None:intergenic | 40.0% | |
| CCACAGATAAAAAGACAGGT+TGG | - | chr4.4:36015744-36015763 | None:intergenic | 40.0% | |
| CTTCGCTTTCTCTGCAAAAA+TGG | - | chr4.4:36016846-36016865 | None:intergenic | 40.0% | |
| GAACAGTACAGATTGGAAGA+GGG | + | chr4.4:36015069-36015088 | MS.gene057726:CDS | 40.0% | |
| GATATCAGTGGTTAAAGGCA+AGG | + | chr4.4:36016469-36016488 | MS.gene057726:intron | 40.0% | |
| GCGTTATGGAACAAAGTCAA+CGG | + | chr4.4:36017460-36017479 | MS.gene057726:CDS | 40.0% | |
| GTTCTTTGATGAACAGTTGC+AGG | + | chr4.4:36018348-36018367 | MS.gene057726:intron | 40.0% | |
| TCTTGCAAGATCCTCGTTAA+TGG | - | chr4.4:36018563-36018582 | None:intergenic | 40.0% | |
| TGAACAGTACAGATTGGAAG+AGG | + | chr4.4:36015068-36015087 | MS.gene057726:CDS | 40.0% | |
| TTACAAGTTGTGATCTGCAG+CGG | - | chr4.4:36016607-36016626 | None:intergenic | 40.0% | |
| ! | ATTGAAGGCGTGTTTGATGT+TGG | - | chr4.4:36015578-36015597 | None:intergenic | 40.0% |
| ! | ATTGGGCTAGAATATGGTTG+TGG | + | chr4.4:36016572-36016591 | MS.gene057726:intron | 40.0% |
| ! | CATTTTTGCAGAGAAAGCGA+AGG | + | chr4.4:36016844-36016863 | MS.gene057726:intron | 40.0% |
| ! | CCAACCTGTCTTTTTATCTG+TGG | + | chr4.4:36015741-36015760 | MS.gene057726:intron | 40.0% |
| ! | GTGGTTAAAGGCAAGGTTTT+AGG | + | chr4.4:36016476-36016495 | MS.gene057726:intron | 40.0% |
| ! | GTGTTTGTTGAAGAGTTGTC+TGG | + | chr4.4:36016962-36016981 | MS.gene057726:intron | 40.0% |
| ! | GTTTAGTAGTTCTTCTGGGA+TGG | + | chr4.4:36014891-36014910 | MS.gene057726:CDS | 40.0% |
| ! | TTTGGTTCCACTTTCTAAGG+AGG | - | chr4.4:36015508-36015527 | None:intergenic | 40.0% |
| !! | ACATCGCGAACAGTTTTATC+AGG | - | chr4.4:36016097-36016116 | None:intergenic | 40.0% |
| !! | CTTCTTGTTGATTCAGTTCC+AGG | + | chr4.4:36015003-36015022 | MS.gene057726:CDS | 40.0% |
| !! | TCTTCTGGGATGGTATATTC+TGG | + | chr4.4:36014901-36014920 | MS.gene057726:CDS | 40.0% |
| !!! | AAGTGCGTCGTTTTTGTAAG+TGG | + | chr4.4:36017650-36017669 | MS.gene057726:intron | 40.0% |
| AGAATATGACCCCATGCTTG+GGG | - | chr4.4:36017430-36017449 | None:intergenic | 45.0% | |
| AGATCCTCGTTAATGGCAAC+AGG | - | chr4.4:36018556-36018575 | None:intergenic | 45.0% | |
| ATGTCAGAGATGGTCCCAAT+GGG | + | chr4.4:36014856-36014875 | MS.gene057726:CDS | 45.0% | |
| CACCACCTTGACTTACAACA+TGG | - | chr4.4:36014954-36014973 | None:intergenic | 45.0% | |
| CGAAGGAAACCAGATGAACA+CGG | + | chr4.4:36016861-36016880 | MS.gene057726:CDS | 45.0% | |
| GAAACCAGATGAACACGGTT+TGG | + | chr4.4:36016866-36016885 | MS.gene057726:CDS | 45.0% | |
| GAGAATATGACCCCATGCTT+GGG | - | chr4.4:36017431-36017450 | None:intergenic | 45.0% | |
| GCACCAACACTTCTGATTGA+AGG | - | chr4.4:36015593-36015612 | None:intergenic | 45.0% | |
| GCTTCTTCAGGATAAGTCGT+TGG | + | chr4.4:36017368-36017387 | MS.gene057726:intron | 45.0% | |
| TAAATGGGGGAGTAAAGGCA+AGG | - | chr4.4:36016699-36016718 | None:intergenic | 45.0% | |
| TGAGAATATGACCCCATGCT+TGG | - | chr4.4:36017432-36017451 | None:intergenic | 45.0% | |
| TGATGTTGGCACAACACATG+TGG | - | chr4.4:36015564-36015583 | None:intergenic | 45.0% | |
| TGCTCCATGAGTTGCTTCAT+GGG | - | chr4.4:36017727-36017746 | None:intergenic | 45.0% | |
| TTCTCACATGTCACGCGTTA+TGG | + | chr4.4:36017446-36017465 | MS.gene057726:CDS | 45.0% | |
| TTTCCCAAACCGTGTTCATC+TGG | - | chr4.4:36016873-36016892 | None:intergenic | 45.0% | |
| ! | ACGCCTTCAATCAGAAGTGT+TGG | + | chr4.4:36015587-36015606 | MS.gene057726:intron | 45.0% |
| !! | ATCAGAAGTGTTGGTGCTAC+AGG | + | chr4.4:36015596-36015615 | MS.gene057726:intron | 45.0% |
| !! | ATGTTGCTTTGAGGTGTAGG+TGG | + | chr4.4:36016113-36016132 | MS.gene057726:CDS | 45.0% |
| !! | TCAGAAGTGTTGGTGCTACA+GGG | + | chr4.4:36015597-36015616 | MS.gene057726:intron | 45.0% |
| ACTGCCTGTTGCCATTAACG+AGG | + | chr4.4:36018549-36018568 | MS.gene057726:CDS | 50.0% | |
| ATGGAGGCAGAGTCAAACAG+AGG | + | chr4.4:36014757-36014776 | MS.gene057726:CDS | 50.0% | |
| CAGGGCTTAAGCATGACACA+GGG | + | chr4.4:36015022-36015041 | MS.gene057726:CDS | 50.0% | |
| CATGTCAGAGATGGTCCCAA+TGG | + | chr4.4:36014855-36014874 | MS.gene057726:CDS | 50.0% | |
| CGTTCGTCTCAGCACTTCAT+AGG | - | chr4.4:36015172-36015191 | None:intergenic | 50.0% | |
| CTGCTCCATGAGTTGCTTCA+TGG | - | chr4.4:36017728-36017747 | None:intergenic | 50.0% | |
| GAATATGACCCCATGCTTGG+GGG | - | chr4.4:36017429-36017448 | None:intergenic | 50.0% | |
| GCTTAAGCATGACACAGGGT+TGG | + | chr4.4:36015026-36015045 | MS.gene057726:CDS | 50.0% | |
| GTCTGTCTGCAAGTCTGATC+AGG | + | chr4.4:36015708-36015727 | MS.gene057726:intron | 50.0% | |
| GTTGTAAGTCAAGGTGGTGC+TGG | + | chr4.4:36014955-36014974 | MS.gene057726:CDS | 50.0% | |
| TCGTTAATGGCAACAGGCAG+TGG | - | chr4.4:36018550-36018569 | None:intergenic | 50.0% | |
| TGGAGGCAGAGTCAAACAGA+GGG | + | chr4.4:36014758-36014777 | MS.gene057726:CDS | 50.0% | |
| TGGATTCATGCACACAGCAC+AGG | - | chr4.4:36016209-36016228 | None:intergenic | 50.0% | |
| TGTGCCTTGTGTGGCAAAAG+AGG | - | chr4.4:36018384-36018403 | None:intergenic | 50.0% | |
| TTAATGGCAACAGGCAGTGG+CGG | - | chr4.4:36018547-36018566 | None:intergenic | 50.0% | |
| ! | GGCATTTGGCTCATAATGCC+AGG | - | chr4.4:36018526-36018545 | None:intergenic | 50.0% |
| ! | GTGCTGGTGGTAATTCAGCT+GGG | + | chr4.4:36014971-36014990 | MS.gene057726:CDS | 50.0% |
| ! | TCGACCTCTTTTGCCACACA+AGG | + | chr4.4:36018377-36018396 | MS.gene057726:CDS | 50.0% |
| !! | ACACAGGGTTGGCTGTTGAA+TGG | + | chr4.4:36015037-36015056 | MS.gene057726:CDS | 50.0% |
| !! | CTGTTCGCGATGTTGCTTTG+AGG | + | chr4.4:36016104-36016123 | MS.gene057726:CDS | 50.0% |
| !! | GCGATGTTGCTTTGAGGTGT+AGG | + | chr4.4:36016110-36016129 | MS.gene057726:CDS | 50.0% |
| CCAGGGCTTAAGCATGACAC+AGG | + | chr4.4:36015021-36015040 | MS.gene057726:CDS | 55.0% | |
| CCTGTGTCATGCTTAAGCCC+TGG | - | chr4.4:36015024-36015043 | None:intergenic | 55.0% | |
| TGCAGCATGAGTGAGATGCC+TGG | + | chr4.4:36018505-36018524 | MS.gene057726:intron | 55.0% | |
| TGGGCCCATGAAGCAACTCA+TGG | + | chr4.4:36017720-36017739 | MS.gene057726:CDS | 55.0% | |
| TGGGGGAGTAAAGGCAAGGA+AGG | - | chr4.4:36016695-36016714 | None:intergenic | 55.0% | |
| ! | GTAAGTCAAGGTGGTGCTGG+TGG | + | chr4.4:36014958-36014977 | MS.gene057726:CDS | 55.0% |
| !! | GGTGCTGGTGGTAATTCAGC+TGG | + | chr4.4:36014970-36014989 | MS.gene057726:CDS | 55.0% |
| CAACAGGCAGTGGCGGCATT+TGG | - | chr4.4:36018540-36018559 | None:intergenic | 60.0% | |
| TCGGCTCTACCCCCAAGCAT+GGG | + | chr4.4:36017417-36017436 | MS.gene057726:CDS | 60.0% | |
| TTCGGCTCTACCCCCAAGCA+TGG | + | chr4.4:36017416-36017435 | MS.gene057726:CDS | 60.0% | |
| CGGCTCTACCCCCAAGCATG+GGG | + | chr4.4:36017418-36017437 | MS.gene057726:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 36014757 | 36018606 | 36014757 | ID=MS.gene057726 |
| chr4.4 | mRNA | 36014757 | 36018606 | 36014757 | ID=MS.gene057726.t1;Parent=MS.gene057726 |
| chr4.4 | exon | 36014757 | 36015100 | 36014757 | ID=MS.gene057726.t1.exon1;Parent=MS.gene057726.t1 |
| chr4.4 | CDS | 36014757 | 36015100 | 36014757 | ID=cds.MS.gene057726.t1;Parent=MS.gene057726.t1 |
| chr4.4 | exon | 36016042 | 36016141 | 36016042 | ID=MS.gene057726.t1.exon2;Parent=MS.gene057726.t1 |
| chr4.4 | CDS | 36016042 | 36016141 | 36016042 | ID=cds.MS.gene057726.t1;Parent=MS.gene057726.t1 |
| chr4.4 | exon | 36016855 | 36016911 | 36016855 | ID=MS.gene057726.t1.exon3;Parent=MS.gene057726.t1 |
| chr4.4 | CDS | 36016855 | 36016911 | 36016855 | ID=cds.MS.gene057726.t1;Parent=MS.gene057726.t1 |
| chr4.4 | exon | 36017378 | 36017495 | 36017378 | ID=MS.gene057726.t1.exon4;Parent=MS.gene057726.t1 |
| chr4.4 | CDS | 36017378 | 36017495 | 36017378 | ID=cds.MS.gene057726.t1;Parent=MS.gene057726.t1 |
| chr4.4 | exon | 36017713 | 36017795 | 36017713 | ID=MS.gene057726.t1.exon5;Parent=MS.gene057726.t1 |
| chr4.4 | CDS | 36017713 | 36017795 | 36017713 | ID=cds.MS.gene057726.t1;Parent=MS.gene057726.t1 |
| chr4.4 | exon | 36018364 | 36018425 | 36018364 | ID=MS.gene057726.t1.exon6;Parent=MS.gene057726.t1 |
| chr4.4 | CDS | 36018364 | 36018425 | 36018364 | ID=cds.MS.gene057726.t1;Parent=MS.gene057726.t1 |
| chr4.4 | exon | 36018510 | 36018606 | 36018510 | ID=MS.gene057726.t1.exon7;Parent=MS.gene057726.t1 |
| chr4.4 | CDS | 36018510 | 36018606 | 36018510 | ID=cds.MS.gene057726.t1;Parent=MS.gene057726.t1 |
| Gene Sequence |
| Protein sequence |
