Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057819.t1 | AES89310.1 | 84.4 | 320 | 17 | 1 | 1 | 287 | 1 | 320 | 8.00E-148 | 533.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057819.t1 | E7C196 | 52.8 | 324 | 113 | 1 | 4 | 287 | 3 | 326 | 2.2e-93 | 343.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057819.t1 | G7JL35 | 84.4 | 320 | 17 | 1 | 1 | 287 | 1 | 320 | 5.8e-148 | 533.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057819 | MS.gene062950 | 0.846991 | 1.53E-59 | -1.69E-46 |
| MS.gene057819 | MS.gene50678 | 0.86998 | 2.06E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057819.t1 | MTR_4g072360 | 84.375 | 320 | 17 | 1 | 1 | 287 | 1 | 320 | 0.0 | 541 |
| MS.gene057819.t1 | MTR_4g072350 | 80.997 | 321 | 28 | 1 | 1 | 288 | 1 | 321 | 0.0 | 527 |
| MS.gene057819.t1 | MTR_4g072320 | 74.375 | 320 | 43 | 3 | 1 | 287 | 1 | 314 | 2.03e-170 | 474 |
| MS.gene057819.t1 | MTR_6g073110 | 55.346 | 318 | 109 | 1 | 1 | 285 | 1 | 318 | 2.78e-130 | 372 |
| MS.gene057819.t1 | MTR_0374s0050 | 45.511 | 323 | 132 | 4 | 1 | 287 | 1 | 315 | 2.19e-94 | 281 |
| MS.gene057819.t1 | MTR_3g083130 | 46.226 | 318 | 122 | 8 | 6 | 285 | 7 | 313 | 3.31e-87 | 263 |
| MS.gene057819.t1 | MTR_5g097900 | 45.395 | 304 | 121 | 7 | 16 | 285 | 19 | 311 | 4.73e-79 | 242 |
| MS.gene057819.t1 | MTR_5g097910 | 46.643 | 283 | 115 | 5 | 16 | 265 | 19 | 298 | 7.63e-79 | 241 |
| MS.gene057819.t1 | MTR_5g097940 | 46.643 | 283 | 115 | 5 | 16 | 265 | 19 | 298 | 7.63e-79 | 241 |
| MS.gene057819.t1 | MTR_4g036845 | 40.190 | 316 | 153 | 6 | 5 | 287 | 2 | 314 | 3.86e-71 | 222 |
| MS.gene057819.t1 | MTR_8g070095 | 38.658 | 313 | 152 | 6 | 11 | 287 | 10 | 318 | 3.45e-68 | 214 |
| MS.gene057819.t1 | MTR_6g072650 | 66.000 | 150 | 29 | 1 | 139 | 288 | 10 | 137 | 3.27e-66 | 203 |
| MS.gene057819.t1 | MTR_4g021350 | 37.778 | 315 | 146 | 8 | 11 | 287 | 10 | 312 | 3.43e-64 | 204 |
| MS.gene057819.t1 | MTR_4g021410 | 40.333 | 300 | 146 | 7 | 11 | 285 | 11 | 302 | 2.58e-63 | 201 |
| MS.gene057819.t1 | MTR_4g021450 | 39.103 | 312 | 157 | 7 | 1 | 287 | 1 | 304 | 3.52e-62 | 199 |
| MS.gene057819.t1 | MTR_8g070115 | 37.540 | 309 | 157 | 6 | 11 | 287 | 10 | 314 | 6.61e-61 | 196 |
| MS.gene057819.t1 | MTR_4g021410 | 41.045 | 268 | 128 | 5 | 43 | 285 | 3 | 265 | 1.59e-58 | 188 |
| MS.gene057819.t1 | MTR_7g063580 | 37.942 | 311 | 152 | 7 | 11 | 287 | 50 | 353 | 7.00e-56 | 184 |
| MS.gene057819.t1 | MTR_4g021350 | 36.806 | 288 | 133 | 7 | 11 | 261 | 10 | 285 | 1.96e-54 | 178 |
| MS.gene057819.t1 | MTR_7g070500 | 33.226 | 310 | 164 | 7 | 11 | 285 | 17 | 318 | 1.11e-52 | 175 |
| MS.gene057819.t1 | MTR_4g021450 | 46.667 | 180 | 91 | 2 | 109 | 287 | 10 | 185 | 6.15e-48 | 158 |
| MS.gene057819.t1 | MTR_4g072060 | 31.973 | 294 | 155 | 6 | 9 | 261 | 3 | 292 | 1.31e-47 | 161 |
| MS.gene057819.t1 | MTR_4g021450 | 46.667 | 180 | 91 | 2 | 109 | 287 | 53 | 228 | 3.64e-47 | 157 |
| MS.gene057819.t1 | MTR_4g021410 | 45.213 | 188 | 98 | 2 | 99 | 285 | 43 | 226 | 4.51e-47 | 157 |
| MS.gene057819.t1 | MTR_7g070500 | 32.270 | 282 | 151 | 4 | 11 | 260 | 17 | 290 | 4.88e-47 | 159 |
| MS.gene057819.t1 | MTR_6g072710 | 63.551 | 107 | 39 | 0 | 157 | 263 | 1 | 107 | 3.62e-45 | 149 |
| MS.gene057819.t1 | MTR_3g092140 | 24.823 | 282 | 154 | 9 | 35 | 261 | 72 | 350 | 7.34e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057819.t1 | AT1G59960 | 42.769 | 325 | 148 | 4 | 1 | 287 | 1 | 325 | 8.34e-91 | 273 |
| MS.gene057819.t1 | AT1G59950 | 43.279 | 305 | 139 | 3 | 17 | 287 | 15 | 319 | 3.04e-89 | 268 |
| MS.gene057819.t1 | AT2G37790 | 40.260 | 308 | 149 | 5 | 11 | 287 | 10 | 313 | 1.85e-70 | 220 |
| MS.gene057819.t1 | AT2G37770 | 40.453 | 309 | 148 | 6 | 11 | 287 | 10 | 314 | 5.22e-69 | 216 |
| MS.gene057819.t1 | AT5G62420 | 39.032 | 310 | 154 | 4 | 11 | 287 | 8 | 315 | 8.11e-68 | 214 |
| MS.gene057819.t1 | AT2G37760 | 38.835 | 309 | 149 | 6 | 11 | 287 | 10 | 310 | 1.27e-66 | 210 |
| MS.gene057819.t1 | AT2G37760 | 38.835 | 309 | 149 | 6 | 11 | 287 | 10 | 310 | 1.27e-66 | 210 |
| MS.gene057819.t1 | AT3G53880 | 39.806 | 309 | 150 | 6 | 11 | 287 | 10 | 314 | 2.42e-65 | 207 |
| MS.gene057819.t1 | AT2G37760 | 38.462 | 286 | 137 | 5 | 11 | 265 | 10 | 287 | 2.63e-60 | 193 |
| MS.gene057819.t1 | AT2G37760 | 38.462 | 286 | 137 | 5 | 11 | 265 | 10 | 287 | 2.63e-60 | 193 |
| MS.gene057819.t1 | AT2G37760 | 38.732 | 284 | 135 | 5 | 11 | 263 | 10 | 285 | 4.41e-60 | 193 |
| MS.gene057819.t1 | AT3G53880 | 37.586 | 290 | 146 | 5 | 3 | 261 | 2 | 287 | 1.37e-54 | 179 |
| MS.gene057819.t1 | AT5G01670 | 34.268 | 321 | 164 | 9 | 2 | 285 | 9 | 319 | 5.95e-54 | 178 |
| MS.gene057819.t1 | AT2G37760 | 38.760 | 258 | 125 | 5 | 62 | 287 | 8 | 264 | 5.95e-52 | 171 |
| MS.gene057819.t1 | AT2G37760 | 38.760 | 258 | 125 | 5 | 62 | 287 | 8 | 264 | 5.95e-52 | 171 |
| MS.gene057819.t1 | AT2G21260 | 32.542 | 295 | 154 | 7 | 8 | 261 | 2 | 292 | 1.27e-49 | 166 |
| MS.gene057819.t1 | AT2G21250 | 31.186 | 295 | 158 | 6 | 8 | 261 | 2 | 292 | 4.80e-48 | 162 |
| MS.gene057819.t1 | AT2G37770 | 40.704 | 199 | 83 | 5 | 11 | 178 | 10 | 204 | 4.61e-39 | 138 |
| MS.gene057819.t1 | AT5G01670 | 38.298 | 188 | 110 | 4 | 101 | 285 | 162 | 346 | 2.12e-38 | 138 |
| MS.gene057819.t1 | AT5G01670 | 40.659 | 91 | 47 | 3 | 2 | 91 | 9 | 93 | 1.51e-11 | 64.3 |
| MS.gene057819.t1 | AT2G21250 | 30.932 | 236 | 118 | 6 | 8 | 202 | 2 | 233 | 5.39e-32 | 119 |
| MS.gene057819.t1 | AT2G21260 | 34.641 | 153 | 97 | 1 | 110 | 259 | 70 | 222 | 2.59e-31 | 117 |
| MS.gene057819.t1 | AT5G53580 | 24.715 | 263 | 146 | 9 | 42 | 252 | 80 | 342 | 3.72e-11 | 63.5 |
Find 59 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGTCCTCACCTCAATTT+TGG | 0.184617 | 4.4:-36800527 | MS.gene057819:CDS |
| ATTAACTGCAGGAGAGATTT+TGG | 0.209158 | 4.4:+36799981 | None:intergenic |
| AAGATGCCAATGATAGGTTT+TGG | 0.319452 | 4.4:-36800577 | MS.gene057819:CDS |
| GGAGGATACAAACTAAGTTT+TGG | 0.339924 | 4.4:-36799553 | MS.gene057819:CDS |
| CAATGGGAATTGCCCCTTGC+TGG | 0.340720 | 4.4:+36799172 | None:intergenic |
| TTGGTTGATGCTATTGAAAC+AGG | 0.349605 | 4.4:-36800508 | MS.gene057819:CDS |
| AAAACATTGAAATATTTGAT+TGG | 0.366649 | 4.4:-36799119 | MS.gene057819:CDS |
| AATCTCTCCTGCAGTTAATC+AGG | 0.372724 | 4.4:-36799977 | MS.gene057819:intron |
| GAAATGTTTGTATCTGATAA+TGG | 0.381759 | 4.4:-36799033 | MS.gene057819:CDS |
| TCTATTGGTGTTAGCAACTT+TGG | 0.384780 | 4.4:-36800036 | MS.gene057819:CDS |
| CCAGAGGTGATGCTAAATTC+AGG | 0.396623 | 4.4:-36800604 | MS.gene057819:CDS |
| AAACATTGAAATATTTGATT+GGG | 0.403714 | 4.4:-36799118 | MS.gene057819:CDS |
| TATGGAAGAATGTTATAGAT+TGG | 0.404875 | 4.4:-36800070 | MS.gene057819:CDS |
| AATGAACTCATCATGGCATC+AGG | 0.418023 | 4.4:-36799635 | MS.gene057819:CDS |
| GATGTTCCAAAACCTATCAT+TGG | 0.419966 | 4.4:+36800571 | None:intergenic |
| TGTTCGTCACTTCCAAGTTA+TGG | 0.427026 | 4.4:-36800381 | MS.gene057819:CDS |
| ATGGAAGAATGTTATAGATT+GGG | 0.431421 | 4.4:-36800069 | MS.gene057819:CDS |
| TTGGGCTTAGCAAAGTCTAT+TGG | 0.442567 | 4.4:-36800051 | MS.gene057819:CDS |
| TCCTCAATGCAGACTTCTAA+AGG | 0.473407 | 4.4:-36799058 | MS.gene057819:CDS |
| CCTGAATTTAGCATCACCTC+TGG | 0.475460 | 4.4:+36800604 | None:intergenic |
| AAAAGGAACATGGGAAGCTA+TGG | 0.478713 | 4.4:-36800088 | MS.gene057819:CDS |
| AATAGCATCAACCAAAATTG+AGG | 0.486174 | 4.4:+36800516 | None:intergenic |
| TTTGGCACTTTCTAAGAGCA+TGG | 0.509300 | 4.4:+36799999 | None:intergenic |
| GCCGTCCCACAGCTCTTCCA+AGG | 0.512840 | 4.4:+36798999 | None:intergenic |
| GTGTCAAAAGCTTTAAAGCT+AGG | 0.516792 | 4.4:-36800427 | MS.gene057819:CDS |
| TTATGCAGATAGCACTAAGA+TGG | 0.518946 | 4.4:-36799200 | MS.gene057819:intron |
| TAATGGACCTTACAAAACCT+TGG | 0.524158 | 4.4:-36799016 | MS.gene057819:CDS |
| AGCATCAGTACACCATAACT+TGG | 0.527137 | 4.4:+36800369 | None:intergenic |
| CAGAGGTGATGCTAAATTCA+GGG | 0.531151 | 4.4:-36800603 | MS.gene057819:CDS |
| ATTGAATTCTCCATCACTGC+AGG | 0.533560 | 4.4:+36799526 | None:intergenic |
| AGGACTTCATGTGGTGGAGA+GGG | 0.552325 | 4.4:+36800541 | None:intergenic |
| TGAAAAGCTTCAACAAGGAA+AGG | 0.559851 | 4.4:-36799149 | MS.gene057819:CDS |
| ACCTTTAGAAGTCTGCATTG+AGG | 0.563304 | 4.4:+36799057 | None:intergenic |
| AGGTGGAAATGAACTCATCA+TGG | 0.565825 | 4.4:-36799642 | MS.gene057819:CDS |
| AGAGAATTCTGCAAGCAGAA+AGG | 0.568462 | 4.4:-36799604 | MS.gene057819:CDS |
| TGTCATACCTGATTAACTGC+AGG | 0.568797 | 4.4:+36799970 | None:intergenic |
| CAAAACCTTGGAAGAGCTGT+GGG | 0.578336 | 4.4:-36799004 | MS.gene057819:CDS |
| TAAGATGGATATACCAGCAA+GGG | 0.578343 | 4.4:-36799185 | MS.gene057819:CDS |
| TAGAAAGAAAAGTGTAGCCC+AGG | 0.580823 | 4.4:-36799482 | MS.gene057819:intron |
| GTGAGTGCATGGTCACCACT+AGG | 0.581102 | 4.4:-36799574 | MS.gene057819:CDS |
| AAGGAATTCATGTGAGTGCA+TGG | 0.584602 | 4.4:-36799585 | MS.gene057819:CDS |
| GAGGACTTCATGTGGTGGAG+AGG | 0.593214 | 4.4:+36800540 | None:intergenic |
| TATAATACTGAAGAACCTCT+AGG | 0.593820 | 4.4:-36800457 | MS.gene057819:CDS |
| TTTGACACAGCTTGGCCTAG+AGG | 0.596039 | 4.4:+36800442 | None:intergenic |
| ATGAACTCATCATGGCATCA+GGG | 0.596474 | 4.4:-36799634 | MS.gene057819:CDS |
| GGAAGCAAAGAAAGTTCCAG+AGG | 0.612070 | 4.4:-36800620 | MS.gene057819:CDS |
| ACCTTGGAAGAGCTGTGGGA+CGG | 0.612908 | 4.4:-36799000 | MS.gene057819:CDS |
| ACAAAACCTTGGAAGAGCTG+TGG | 0.614469 | 4.4:-36799005 | MS.gene057819:CDS |
| TGAACTCATCATGGCATCAG+GGG | 0.614858 | 4.4:-36799633 | MS.gene057819:CDS |
| CATTGTGAAAAGCTTCAACA+AGG | 0.618998 | 4.4:-36799154 | MS.gene057819:CDS |
| CTTAGTTTGTATCCTCCTAG+TGG | 0.632741 | 4.4:+36799559 | None:intergenic |
| AGGTTGAAACAAGATGTTGA+AGG | 0.640905 | 4.4:-36800150 | MS.gene057819:CDS |
| AGGCTATAACATTAAGAGTG+AGG | 0.656023 | 4.4:-36800130 | MS.gene057819:CDS |
| CATCAACCAAAATTGAGGTG+AGG | 0.663706 | 4.4:+36800521 | None:intergenic |
| CTAAGATGGATATACCAGCA+AGG | 0.682956 | 4.4:-36799186 | MS.gene057819:CDS |
| AGTGCATGGTCACCACTAGG+AGG | 0.692544 | 4.4:-36799571 | MS.gene057819:CDS |
| AAGATGGATATACCAGCAAG+GGG | 0.693926 | 4.4:-36799184 | MS.gene057819:CDS |
| GAGGTGAGGACTTCATGTGG+TGG | 0.731533 | 4.4:+36800535 | None:intergenic |
| ATTGAGGTGAGGACTTCATG+TGG | 0.753402 | 4.4:+36800532 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAGAATTAGAAAAAC+AGG | + | chr4.4:36800229-36800248 | None:intergenic | 15.0% |
| !! | AAAACATTGAAATATTTGAT+TGG | - | chr4.4:36800493-36800512 | MS.gene057819:CDS | 15.0% |
| !! | AAACATTGAAATATTTGATT+GGG | - | chr4.4:36800494-36800513 | MS.gene057819:CDS | 15.0% |
| !! | CAATATATAATATAAAGAGT+TGG | + | chr4.4:36800314-36800333 | None:intergenic | 15.0% |
| !!! | AACTTCACTAAATTTTTAAT+TGG | + | chr4.4:36800192-36800211 | None:intergenic | 15.0% |
| !! | ATATTAGATACCATATGTAA+AGG | + | chr4.4:36799791-36799810 | None:intergenic | 20.0% |
| !! | TATTAGATACCATATGTAAA+GGG | + | chr4.4:36799790-36799809 | None:intergenic | 20.0% |
| !!! | ATCATTCCTTTTGATATAAA+AGG | - | chr4.4:36799507-36799526 | MS.gene057819:CDS | 20.0% |
| !!! | ATTTTTAATTGGCTAAACAT+AGG | + | chr4.4:36800181-36800200 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTTTCTTTCTCAA+TGG | - | chr4.4:36800241-36800260 | MS.gene057819:intron | 20.0% |
| !!! | TAATTTTGTCTAATTCTTGT+TGG | + | chr4.4:36800527-36800546 | None:intergenic | 20.0% |
| !!! | TTTTGATATAAAAGGAACAT+GGG | - | chr4.4:36799515-36799534 | MS.gene057819:CDS | 20.0% |
| !!! | TTTTGTTACAAATTCTTAGT+TGG | - | chr4.4:36799943-36799962 | MS.gene057819:intron | 20.0% |
| ! | ACAAATTCTTAGTTGGATTT+AGG | - | chr4.4:36799950-36799969 | MS.gene057819:intron | 25.0% |
| ! | ACATAGAGATCAAATACTAT+TGG | - | chr4.4:36799695-36799714 | MS.gene057819:intron | 25.0% |
| ! | ATGGAAGAATGTTATAGATT+GGG | - | chr4.4:36799543-36799562 | MS.gene057819:CDS | 25.0% |
| ! | GAAATGTTTGTATCTGATAA+TGG | - | chr4.4:36800579-36800598 | MS.gene057819:CDS | 25.0% |
| ! | TATGGAAGAATGTTATAGAT+TGG | - | chr4.4:36799542-36799561 | MS.gene057819:CDS | 25.0% |
| ! | TTTCAATGTAACAGTAGTAT+AGG | + | chr4.4:36800368-36800387 | None:intergenic | 25.0% |
| !! | CATGTTCCTTTTATATCAAA+AGG | + | chr4.4:36799516-36799535 | None:intergenic | 25.0% |
| !! | CTTTTGATATAAAAGGAACA+TGG | - | chr4.4:36799514-36799533 | MS.gene057819:CDS | 25.0% |
| !! | TCATTCTTTCTAGAAATTTC+TGG | - | chr4.4:36799818-36799837 | MS.gene057819:intron | 25.0% |
| !!! | TTGAAAGTCTATTTCTAATG+TGG | - | chr4.4:36800382-36800401 | MS.gene057819:CDS | 25.0% |
| AATAGCATCAACCAAAATTG+AGG | + | chr4.4:36799099-36799118 | None:intergenic | 30.0% | |
| AATCACAAACGTAAAAGAAG+CGG | + | chr4.4:36799348-36799367 | None:intergenic | 30.0% | |
| AATTCTTAGTTGGATTTAGG+TGG | - | chr4.4:36799953-36799972 | MS.gene057819:intron | 30.0% | |
| ATTGTACAGAAAACTGAAGT+TGG | - | chr4.4:36799402-36799421 | MS.gene057819:intron | 30.0% | |
| CAGATATTTCCCTTTACATA+TGG | - | chr4.4:36799778-36799797 | MS.gene057819:intron | 30.0% | |
| TATAATACTGAAGAACCTCT+AGG | - | chr4.4:36799155-36799174 | MS.gene057819:CDS | 30.0% | |
| TCAATACTTTCTAATCGACT+AGG | - | chr4.4:36799862-36799881 | MS.gene057819:intron | 30.0% | |
| ! | TTGTTGAAGCTTTTCACAAT+GGG | + | chr4.4:36800459-36800478 | None:intergenic | 30.0% |
| !!! | TTTCCATTTTGAAACAACAG+AGG | + | chr4.4:36799724-36799743 | None:intergenic | 30.0% |
| AAAACTGAAGTTGGACTATG+TGG | - | chr4.4:36799411-36799430 | MS.gene057819:intron | 35.0% | |
| AAAATAAATGAGCTGCACCT+GGG | + | chr4.4:36800150-36800169 | None:intergenic | 35.0% | |
| AAGAGAAATATGCTTGCTTG+AGG | + | chr4.4:36799304-36799323 | None:intergenic | 35.0% | |
| AGAGAAATATGCTTGCTTGA+GGG | + | chr4.4:36799303-36799322 | None:intergenic | 35.0% | |
| AGGCTATAACATTAAGAGTG+AGG | - | chr4.4:36799482-36799501 | MS.gene057819:intron | 35.0% | |
| AGGTTGAAACAAGATGTTGA+AGG | - | chr4.4:36799462-36799481 | MS.gene057819:intron | 35.0% | |
| CAATGGTCAAACTTTAGACT+TGG | - | chr4.4:36800258-36800277 | MS.gene057819:intron | 35.0% | |
| CATTGTGAAAAGCTTCAACA+AGG | - | chr4.4:36800458-36800477 | MS.gene057819:CDS | 35.0% | |
| GATGTTCCAAAACCTATCAT+TGG | + | chr4.4:36799044-36799063 | None:intergenic | 35.0% | |
| TAAAATAAATGAGCTGCACC+TGG | + | chr4.4:36800151-36800170 | None:intergenic | 35.0% | |
| TAAGATGGATATACCAGCAA+GGG | - | chr4.4:36800427-36800446 | MS.gene057819:CDS | 35.0% | |
| TATCTGACGTCTATGAGTAT+CGG | + | chr4.4:36799764-36799783 | None:intergenic | 35.0% | |
| TGAAAAGCTTCAACAAGGAA+AGG | - | chr4.4:36800463-36800482 | MS.gene057819:CDS | 35.0% | |
| TTATGCAGATAGCACTAAGA+TGG | - | chr4.4:36800412-36800431 | MS.gene057819:CDS | 35.0% | |
| ! | AAGATGCCAATGATAGGTTT+TGG | - | chr4.4:36799035-36799054 | MS.gene057819:CDS | 35.0% |
| ! | ATTAACTGCAGGAGAGATTT+TGG | + | chr4.4:36799634-36799653 | None:intergenic | 35.0% |
| ! | CTTGTTGAAGCTTTTCACAA+TGG | + | chr4.4:36800460-36800479 | None:intergenic | 35.0% |
| ! | GGAGGATACAAACTAAGTTT+TGG | - | chr4.4:36800059-36800078 | MS.gene057819:CDS | 35.0% |
| ! | TAAAGAGTTGGTTCAAGATG+TGG | + | chr4.4:36800302-36800321 | None:intergenic | 35.0% |
| ! | TAATGGACCTTACAAAACCT+TGG | - | chr4.4:36800596-36800615 | MS.gene057819:CDS | 35.0% |
| ! | TTAAAGCTTTTGACACAGCT+TGG | + | chr4.4:36799181-36799200 | None:intergenic | 35.0% |
| ! | TTGGTTGATGCTATTGAAAC+AGG | - | chr4.4:36799104-36799123 | MS.gene057819:CDS | 35.0% |
| ! | TTTAGACTTGGTCATAGAAG+TGG | - | chr4.4:36800270-36800289 | MS.gene057819:intron | 35.0% |
| !! | GTGTCAAAAGCTTTAAAGCT+AGG | - | chr4.4:36799185-36799204 | MS.gene057819:CDS | 35.0% |
| !! | TCTATTGGTGTTAGCAACTT+TGG | - | chr4.4:36799576-36799595 | MS.gene057819:CDS | 35.0% |
| !! | TTGCCTCTGTTGTTTCAAAA+TGG | - | chr4.4:36799718-36799737 | MS.gene057819:intron | 35.0% |
| !! | TTTTGATTCACTTTCCAGTG+AGG | - | chr4.4:36799442-36799461 | MS.gene057819:intron | 35.0% |
| AAAAGGAACATGGGAAGCTA+TGG | - | chr4.4:36799524-36799543 | MS.gene057819:CDS | 40.0% | |
| AAGATGGATATACCAGCAAG+GGG | - | chr4.4:36800428-36800447 | MS.gene057819:CDS | 40.0% | |
| AAGGAATTCATGTGAGTGCA+TGG | - | chr4.4:36800027-36800046 | MS.gene057819:CDS | 40.0% | |
| AATCTCTCCTGCAGTTAATC+AGG | - | chr4.4:36799635-36799654 | MS.gene057819:CDS | 40.0% | |
| AATGAACTCATCATGGCATC+AGG | - | chr4.4:36799977-36799996 | MS.gene057819:intron | 40.0% | |
| AGAGAATTCTGCAAGCAGAA+AGG | - | chr4.4:36800008-36800027 | MS.gene057819:CDS | 40.0% | |
| AGCATCAGTACACCATAACT+TGG | + | chr4.4:36799246-36799265 | None:intergenic | 40.0% | |
| AGGTGGAAATGAACTCATCA+TGG | - | chr4.4:36799970-36799989 | MS.gene057819:intron | 40.0% | |
| ATGAACTCATCATGGCATCA+GGG | - | chr4.4:36799978-36799997 | MS.gene057819:CDS | 40.0% | |
| ATTGAATTCTCCATCACTGC+AGG | + | chr4.4:36800089-36800108 | None:intergenic | 40.0% | |
| CAGAGGTGATGCTAAATTCA+GGG | - | chr4.4:36799009-36799028 | MS.gene057819:CDS | 40.0% | |
| CATCAACCAAAATTGAGGTG+AGG | + | chr4.4:36799094-36799113 | None:intergenic | 40.0% | |
| CTAAGATGGATATACCAGCA+AGG | - | chr4.4:36800426-36800445 | MS.gene057819:CDS | 40.0% | |
| GGGAAAAAGATGCCAATGAT+AGG | - | chr4.4:36799029-36799048 | MS.gene057819:CDS | 40.0% | |
| TCCTCAATGCAGACTTCTAA+AGG | - | chr4.4:36800554-36800573 | MS.gene057819:CDS | 40.0% | |
| TGTCATACCTGATTAACTGC+AGG | + | chr4.4:36799645-36799664 | None:intergenic | 40.0% | |
| TGTTCGTCACTTCCAAGTTA+TGG | - | chr4.4:36799231-36799250 | MS.gene057819:intron | 40.0% | |
| TTGGGCTTAGCAAAGTCTAT+TGG | - | chr4.4:36799561-36799580 | MS.gene057819:CDS | 40.0% | |
| ! | ACATCTTGTTTCAACCTCAC+TGG | + | chr4.4:36799459-36799478 | None:intergenic | 40.0% |
| ! | ACCTTTAGAAGTCTGCATTG+AGG | + | chr4.4:36800558-36800577 | None:intergenic | 40.0% |
| ! | GTTCATCGCGATTTTTAACG+AGG | + | chr4.4:36799211-36799230 | None:intergenic | 40.0% |
| ! | TAGAAAGAAAAGTGTAGCCC+AGG | - | chr4.4:36800130-36800149 | MS.gene057819:CDS | 40.0% |
| ! | TGAAGTCCTCACCTCAATTT+TGG | - | chr4.4:36799085-36799104 | MS.gene057819:CDS | 40.0% |
| ! | TTTGGCACTTTCTAAGAGCA+TGG | + | chr4.4:36799616-36799635 | None:intergenic | 40.0% |
| !! | AGCTCTTCCAAGGTTTTGTA+AGG | + | chr4.4:36800606-36800625 | None:intergenic | 40.0% |
| !! | CTTAGTTTGTATCCTCCTAG+TGG | + | chr4.4:36800056-36800075 | None:intergenic | 40.0% |
| ACAAAACCTTGGAAGAGCTG+TGG | - | chr4.4:36800607-36800626 | MS.gene057819:CDS | 45.0% | |
| ATTGAGGTGAGGACTTCATG+TGG | + | chr4.4:36799083-36799102 | None:intergenic | 45.0% | |
| CAAAACCTTGGAAGAGCTGT+GGG | - | chr4.4:36800608-36800627 | MS.gene057819:CDS | 45.0% | |
| CCAGAGGTGATGCTAAATTC+AGG | - | chr4.4:36799008-36799027 | MS.gene057819:CDS | 45.0% | |
| CCTGAATTTAGCATCACCTC+TGG | + | chr4.4:36799011-36799030 | None:intergenic | 45.0% | |
| GAAATATGCTTGCTTGAGGG+TGG | + | chr4.4:36799300-36799319 | None:intergenic | 45.0% | |
| GGAAGCAAAGAAAGTTCCAG+AGG | - | chr4.4:36798992-36799011 | MS.gene057819:CDS | 45.0% | |
| TGAACTCATCATGGCATCAG+GGG | - | chr4.4:36799979-36799998 | MS.gene057819:CDS | 45.0% | |
| !! | TTTTGAGAGCTGGGAGTACA+AGG | + | chr4.4:36799277-36799296 | None:intergenic | 45.0% |
| TTTGACACAGCTTGGCCTAG+AGG | + | chr4.4:36799173-36799192 | None:intergenic | 50.0% | |
| ! | AGGACTTCATGTGGTGGAGA+GGG | + | chr4.4:36799074-36799093 | None:intergenic | 50.0% |
| !!! | TGAGGGTGGTTTTGAGAGCT+GGG | + | chr4.4:36799286-36799305 | None:intergenic | 50.0% |
| !!! | TTGAGGGTGGTTTTGAGAGC+TGG | + | chr4.4:36799287-36799306 | None:intergenic | 50.0% |
| !!! | TTTTGGTTCGCCTGCAGTGA+TGG | - | chr4.4:36800076-36800095 | MS.gene057819:CDS | 50.0% |
| ACCTTGGAAGAGCTGTGGGA+CGG | - | chr4.4:36800612-36800631 | MS.gene057819:CDS | 55.0% | |
| AGTGCATGGTCACCACTAGG+AGG | - | chr4.4:36800041-36800060 | MS.gene057819:CDS | 55.0% | |
| CAATGGGAATTGCCCCTTGC+TGG | + | chr4.4:36800443-36800462 | None:intergenic | 55.0% | |
| GAGGTGAGGACTTCATGTGG+TGG | + | chr4.4:36799080-36799099 | None:intergenic | 55.0% | |
| GTGAGTGCATGGTCACCACT+AGG | - | chr4.4:36800038-36800057 | MS.gene057819:CDS | 55.0% | |
| ! | GAGCTGGGAGTACAAGGTCA+TGG | + | chr4.4:36799271-36799290 | None:intergenic | 55.0% |
| ! | GAGGACTTCATGTGGTGGAG+AGG | + | chr4.4:36799075-36799094 | None:intergenic | 55.0% |
| GCCGTCCCACAGCTCTTCCA+AGG | + | chr4.4:36800616-36800635 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 36798990 | 36800644 | 36798990 | ID=MS.gene057819 |
| chr4.4 | mRNA | 36798990 | 36800644 | 36798990 | ID=MS.gene057819.t1;Parent=MS.gene057819 |
| chr4.4 | exon | 36800380 | 36800644 | 36800380 | ID=MS.gene057819.t1.exon1;Parent=MS.gene057819.t1 |
| chr4.4 | CDS | 36800380 | 36800644 | 36800380 | ID=cds.MS.gene057819.t1;Parent=MS.gene057819.t1 |
| chr4.4 | exon | 36799978 | 36800174 | 36799978 | ID=MS.gene057819.t1.exon2;Parent=MS.gene057819.t1 |
| chr4.4 | CDS | 36799978 | 36800174 | 36799978 | ID=cds.MS.gene057819.t1;Parent=MS.gene057819.t1 |
| chr4.4 | exon | 36799483 | 36799662 | 36799483 | ID=MS.gene057819.t1.exon3;Parent=MS.gene057819.t1 |
| chr4.4 | CDS | 36799483 | 36799662 | 36799483 | ID=cds.MS.gene057819.t1;Parent=MS.gene057819.t1 |
| chr4.4 | exon | 36798990 | 36799214 | 36798990 | ID=MS.gene057819.t1.exon4;Parent=MS.gene057819.t1 |
| chr4.4 | CDS | 36798990 | 36799214 | 36798990 | ID=cds.MS.gene057819.t1;Parent=MS.gene057819.t1 |
| Gene Sequence |
| Protein sequence |
