Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062950.t1 | AES89310.1 | 92.1 | 328 | 18 | 1 | 1 | 328 | 1 | 320 | 7.70E-171 | 609.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062950.t1 | E7C196 | 59.9 | 332 | 118 | 2 | 4 | 328 | 3 | 326 | 6.2e-113 | 408.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062950.t1 | G7JL35 | 92.1 | 328 | 18 | 1 | 1 | 328 | 1 | 320 | 5.5e-171 | 609.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055977 | MS.gene062950 | 0.813842 | 2.09E-51 | -1.69E-46 |
| MS.gene056748 | MS.gene062950 | 0.801423 | 9.07E-49 | -1.69E-46 |
| MS.gene057819 | MS.gene062950 | 0.846991 | 1.53E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062950.t1 | MTR_4g072360 | 92.073 | 328 | 18 | 1 | 1 | 328 | 1 | 320 | 0.0 | 621 |
| MS.gene062950.t1 | MTR_4g072350 | 87.842 | 329 | 32 | 1 | 1 | 329 | 1 | 321 | 0.0 | 598 |
| MS.gene062950.t1 | MTR_4g072320 | 81.402 | 328 | 47 | 3 | 1 | 328 | 1 | 314 | 0.0 | 545 |
| MS.gene062950.t1 | MTR_6g073110 | 61.350 | 326 | 118 | 1 | 1 | 326 | 1 | 318 | 4.59e-154 | 434 |
| MS.gene062950.t1 | MTR_0374s0050 | 50.453 | 331 | 145 | 3 | 1 | 328 | 1 | 315 | 1.44e-112 | 329 |
| MS.gene062950.t1 | MTR_3g083130 | 50.307 | 326 | 138 | 7 | 6 | 326 | 7 | 313 | 7.03e-105 | 310 |
| MS.gene062950.t1 | MTR_5g097900 | 47.273 | 330 | 151 | 8 | 1 | 326 | 1 | 311 | 1.20e-89 | 271 |
| MS.gene062950.t1 | MTR_5g097910 | 48.544 | 309 | 145 | 6 | 1 | 306 | 1 | 298 | 1.55e-89 | 270 |
| MS.gene062950.t1 | MTR_5g097940 | 48.544 | 309 | 145 | 6 | 1 | 306 | 1 | 298 | 1.55e-89 | 270 |
| MS.gene062950.t1 | MTR_4g036845 | 45.566 | 327 | 161 | 9 | 5 | 328 | 2 | 314 | 4.64e-87 | 264 |
| MS.gene062950.t1 | MTR_8g070095 | 43.614 | 321 | 166 | 6 | 11 | 328 | 10 | 318 | 4.49e-84 | 257 |
| MS.gene062950.t1 | MTR_8g070115 | 42.320 | 319 | 169 | 6 | 11 | 328 | 10 | 314 | 8.01e-77 | 238 |
| MS.gene062950.t1 | MTR_4g021350 | 40.308 | 325 | 165 | 8 | 11 | 328 | 10 | 312 | 7.50e-74 | 230 |
| MS.gene062950.t1 | MTR_7g063580 | 42.320 | 319 | 168 | 7 | 11 | 328 | 50 | 353 | 1.68e-71 | 226 |
| MS.gene062950.t1 | MTR_4g021410 | 42.902 | 317 | 155 | 7 | 11 | 326 | 11 | 302 | 5.95e-68 | 215 |
| MS.gene062950.t1 | MTR_4g021450 | 41.641 | 329 | 166 | 7 | 1 | 328 | 1 | 304 | 1.58e-66 | 211 |
| MS.gene062950.t1 | MTR_6g072650 | 66.000 | 150 | 29 | 1 | 180 | 329 | 10 | 137 | 1.12e-65 | 203 |
| MS.gene062950.t1 | MTR_4g021350 | 39.597 | 298 | 152 | 7 | 11 | 302 | 10 | 285 | 4.51e-64 | 204 |
| MS.gene062950.t1 | MTR_4g021410 | 43.860 | 285 | 137 | 5 | 43 | 326 | 3 | 265 | 3.07e-63 | 202 |
| MS.gene062950.t1 | MTR_7g070500 | 36.991 | 319 | 181 | 8 | 11 | 326 | 17 | 318 | 3.61e-63 | 203 |
| MS.gene062950.t1 | MTR_7g070500 | 36.426 | 291 | 168 | 5 | 11 | 301 | 17 | 290 | 2.56e-57 | 187 |
| MS.gene062950.t1 | MTR_4g072060 | 37.500 | 304 | 166 | 7 | 9 | 302 | 3 | 292 | 3.80e-56 | 185 |
| MS.gene062950.t1 | MTR_4g021410 | 44.130 | 247 | 116 | 5 | 81 | 326 | 1 | 226 | 1.12e-51 | 171 |
| MS.gene062950.t1 | MTR_4g021450 | 43.373 | 249 | 119 | 4 | 81 | 328 | 1 | 228 | 8.46e-51 | 168 |
| MS.gene062950.t1 | MTR_4g021450 | 44.974 | 189 | 99 | 2 | 141 | 328 | 1 | 185 | 3.01e-47 | 158 |
| MS.gene062950.t1 | MTR_6g072710 | 63.551 | 107 | 39 | 0 | 198 | 304 | 1 | 107 | 7.09e-45 | 149 |
| MS.gene062950.t1 | MTR_6g072705 | 68.627 | 51 | 16 | 0 | 110 | 160 | 35 | 85 | 8.04e-19 | 80.1 |
| MS.gene062950.t1 | MTR_3g092140 | 23.333 | 300 | 177 | 8 | 35 | 302 | 72 | 350 | 3.08e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062950.t1 | AT1G59960 | 48.048 | 333 | 160 | 3 | 1 | 328 | 1 | 325 | 6.81e-114 | 333 |
| MS.gene062950.t1 | AT1G59950 | 47.604 | 313 | 155 | 2 | 17 | 328 | 15 | 319 | 1.33e-102 | 304 |
| MS.gene062950.t1 | AT2G37790 | 45.283 | 318 | 160 | 5 | 11 | 328 | 10 | 313 | 1.73e-87 | 265 |
| MS.gene062950.t1 | AT2G37770 | 45.768 | 319 | 158 | 6 | 11 | 328 | 10 | 314 | 1.07e-86 | 263 |
| MS.gene062950.t1 | AT5G62420 | 44.237 | 321 | 163 | 8 | 11 | 328 | 8 | 315 | 4.45e-82 | 251 |
| MS.gene062950.t1 | AT3G53880 | 43.425 | 327 | 170 | 6 | 3 | 328 | 2 | 314 | 1.06e-80 | 248 |
| MS.gene062950.t1 | AT2G37760 | 42.320 | 319 | 165 | 5 | 11 | 328 | 10 | 310 | 3.23e-79 | 244 |
| MS.gene062950.t1 | AT2G37760 | 42.320 | 319 | 165 | 5 | 11 | 328 | 10 | 310 | 3.23e-79 | 244 |
| MS.gene062950.t1 | AT5G01670 | 39.210 | 329 | 178 | 9 | 2 | 326 | 9 | 319 | 1.85e-73 | 230 |
| MS.gene062950.t1 | AT2G37760 | 42.230 | 296 | 153 | 4 | 11 | 306 | 10 | 287 | 7.08e-73 | 227 |
| MS.gene062950.t1 | AT2G37760 | 42.230 | 296 | 153 | 4 | 11 | 306 | 10 | 287 | 7.08e-73 | 227 |
| MS.gene062950.t1 | AT2G37760 | 42.517 | 294 | 151 | 4 | 11 | 304 | 10 | 285 | 1.06e-72 | 227 |
| MS.gene062950.t1 | AT3G53880 | 42.333 | 300 | 159 | 5 | 3 | 302 | 2 | 287 | 9.19e-70 | 220 |
| MS.gene062950.t1 | AT5G01670 | 36.236 | 356 | 178 | 10 | 2 | 326 | 9 | 346 | 1.77e-67 | 215 |
| MS.gene062950.t1 | AT2G21260 | 36.393 | 305 | 170 | 7 | 8 | 302 | 2 | 292 | 1.13e-64 | 207 |
| MS.gene062950.t1 | AT2G37760 | 42.910 | 268 | 141 | 4 | 62 | 328 | 8 | 264 | 1.14e-64 | 205 |
| MS.gene062950.t1 | AT2G37760 | 42.910 | 268 | 141 | 4 | 62 | 328 | 8 | 264 | 1.14e-64 | 205 |
| MS.gene062950.t1 | AT2G21250 | 36.393 | 305 | 170 | 7 | 8 | 302 | 2 | 292 | 2.45e-64 | 206 |
| MS.gene062950.t1 | AT2G37770 | 48.804 | 209 | 93 | 5 | 11 | 219 | 10 | 204 | 2.35e-56 | 184 |
| MS.gene062950.t1 | AT2G21250 | 37.398 | 246 | 130 | 7 | 8 | 243 | 2 | 233 | 5.30e-48 | 161 |
| MS.gene062950.t1 | AT2G21260 | 33.040 | 227 | 132 | 5 | 86 | 302 | 8 | 224 | 7.02e-40 | 140 |
| MS.gene062950.t1 | AT1G06690 | 24.825 | 286 | 171 | 8 | 42 | 300 | 94 | 362 | 1.82e-13 | 70.9 |
Find 67 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGTCCTCACCTCAATTT+TGG | 0.184617 | 4.2:-35601631 | MS.gene062950:CDS |
| ATTAACTGCAGGAGAGATTT+TGG | 0.209158 | 4.2:+35601167 | None:intergenic |
| AAGATGCCAATGATAGGTTT+TGG | 0.319452 | 4.2:-35601681 | MS.gene062950:CDS |
| GGAGGATACAAACTAAGTTT+TGG | 0.339924 | 4.2:-35600739 | MS.gene062950:CDS |
| CAATGGGAATTGCCCCTTGC+TGG | 0.340720 | 4.2:+35600356 | None:intergenic |
| TTGGTTGATGCTATTGAAAC+AGG | 0.349605 | 4.2:-35601612 | MS.gene062950:CDS |
| AAAACATTGAAATATTTGAT+TGG | 0.366649 | 4.2:-35600303 | MS.gene062950:CDS |
| AATCTCTCCTGCAGTTAATC+AGG | 0.372724 | 4.2:-35601163 | MS.gene062950:intron |
| GAAATGTTTGTATCTGATAA+TGG | 0.381759 | 4.2:-35600217 | MS.gene062950:CDS |
| TCTATTGGTGTTAGCAACTT+TGG | 0.384780 | 4.2:-35601222 | MS.gene062950:CDS |
| CCAGAGGTGATGCTAAATTC+AGG | 0.396623 | 4.2:-35601708 | MS.gene062950:CDS |
| AAACATTGAAATATTTGATT+GGG | 0.403714 | 4.2:-35600302 | MS.gene062950:CDS |
| TATGGAAGAATGTTATAGAT+TGG | 0.404875 | 4.2:-35601256 | MS.gene062950:CDS |
| AATGAACTCATCATGGCATC+AGG | 0.418023 | 4.2:-35600821 | MS.gene062950:CDS |
| GATGTTCCAAAACCTATCAT+TGG | 0.419966 | 4.2:+35601675 | None:intergenic |
| TGTTCGTCACTTCCAAGTTA+TGG | 0.427026 | 4.2:-35601485 | MS.gene062950:CDS |
| ATGGAAGAATGTTATAGATT+GGG | 0.431421 | 4.2:-35601255 | MS.gene062950:CDS |
| ATTGTACAGAAAACTGAAGT+TGG | 0.437712 | 4.2:-35601394 | MS.gene062950:CDS |
| TTGGGCTTAGCAAAGTCTAT+TGG | 0.442567 | 4.2:-35601237 | MS.gene062950:CDS |
| ACATCTTGTTTCAACCTCAC+TGG | 0.444084 | 4.2:+35601342 | None:intergenic |
| TCCTCAATGCAGACTTCTAA+AGG | 0.473407 | 4.2:-35600242 | MS.gene062950:CDS |
| CCTGAATTTAGCATCACCTC+TGG | 0.475460 | 4.2:+35601708 | None:intergenic |
| AAAAGGAACATGGGAAGCTA+TGG | 0.478713 | 4.2:-35601274 | MS.gene062950:CDS |
| AATAGCATCAACCAAAATTG+AGG | 0.486174 | 4.2:+35601620 | None:intergenic |
| TTTCAAATATGCTTGCTTGA+GGG | 0.491535 | 4.2:+35601416 | None:intergenic |
| TTTGGCACTTTCTAAGAGCA+TGG | 0.509300 | 4.2:+35601185 | None:intergenic |
| GCCGTCCCACAGCTCTTCCA+AGG | 0.512840 | 4.2:+35600183 | None:intergenic |
| ATTTCAAATATGCTTGCTTG+AGG | 0.514354 | 4.2:+35601415 | None:intergenic |
| GTGTCAAAAGCTTTAAAGCT+AGG | 0.516792 | 4.2:-35601531 | MS.gene062950:CDS |
| TTATGCAGATAGCACTAAGA+TGG | 0.518946 | 4.2:-35600384 | MS.gene062950:intron |
| TAATGGACCTTACAAAACCT+TGG | 0.524158 | 4.2:-35600200 | MS.gene062950:CDS |
| AGCATCAGTACACCATAACT+TGG | 0.527137 | 4.2:+35601473 | None:intergenic |
| CAGAGGTGATGCTAAATTCA+GGG | 0.531151 | 4.2:-35601707 | MS.gene062950:CDS |
| ATTGAATTCTCCATCACTGC+AGG | 0.533560 | 4.2:+35600712 | None:intergenic |
| AAAACTGAAGTTGGACTATG+TGG | 0.535532 | 4.2:-35601385 | MS.gene062950:CDS |
| AGGACTTCATGTGGTGGAGA+GGG | 0.552325 | 4.2:+35601645 | None:intergenic |
| TGAAAAGCTTCAACAAGGAA+AGG | 0.559851 | 4.2:-35600333 | MS.gene062950:CDS |
| CAAATATGCTTGCTTGAGGG+TGG | 0.561766 | 4.2:+35601419 | None:intergenic |
| ACCTTTAGAAGTCTGCATTG+AGG | 0.563304 | 4.2:+35600241 | None:intergenic |
| AGGTGGAAATGAACTCATCA+TGG | 0.565825 | 4.2:-35600828 | MS.gene062950:CDS |
| AGAGAATTCTGCAAGCAGAA+AGG | 0.568462 | 4.2:-35600790 | MS.gene062950:CDS |
| TGTCATACCTGATTAACTGC+AGG | 0.568797 | 4.2:+35601156 | None:intergenic |
| ATTTGATTCACTTTCCAGTG+AGG | 0.573209 | 4.2:-35601356 | MS.gene062950:CDS |
| CAAAACCTTGGAAGAGCTGT+GGG | 0.578336 | 4.2:-35600188 | MS.gene062950:CDS |
| TAAGATGGATATACCAGCAA+GGG | 0.578343 | 4.2:-35600369 | MS.gene062950:CDS |
| TAGAAAGAAAAGTGTAGCCC+AGG | 0.580823 | 4.2:-35600668 | MS.gene062950:intron |
| GTGAGTGCATGGTCACCACT+AGG | 0.581102 | 4.2:-35600760 | MS.gene062950:CDS |
| AAGGAATTCATGTGAGTGCA+TGG | 0.584602 | 4.2:-35600771 | MS.gene062950:CDS |
| GAGGACTTCATGTGGTGGAG+AGG | 0.593214 | 4.2:+35601644 | None:intergenic |
| TATAATACTGAAGAACCTCT+AGG | 0.593820 | 4.2:-35601561 | MS.gene062950:CDS |
| TTTGACACAGCTTGGCCTAG+AGG | 0.596039 | 4.2:+35601546 | None:intergenic |
| ATGAACTCATCATGGCATCA+GGG | 0.596474 | 4.2:-35600820 | MS.gene062950:CDS |
| GGAAGCAAAGAAAGTTCCAG+AGG | 0.612070 | 4.2:-35601724 | MS.gene062950:CDS |
| ACCTTGGAAGAGCTGTGGGA+CGG | 0.612908 | 4.2:-35600184 | MS.gene062950:CDS |
| ACAAAACCTTGGAAGAGCTG+TGG | 0.614469 | 4.2:-35600189 | MS.gene062950:CDS |
| TGAACTCATCATGGCATCAG+GGG | 0.614858 | 4.2:-35600819 | MS.gene062950:CDS |
| CATTGTGAAAAGCTTCAACA+AGG | 0.618998 | 4.2:-35600338 | MS.gene062950:CDS |
| GAGCTGGGAGTACAAGGTCA+TGG | 0.624397 | 4.2:+35601448 | None:intergenic |
| CTTAGTTTGTATCCTCCTAG+TGG | 0.632741 | 4.2:+35600745 | None:intergenic |
| AGGTTGAAACAAGATGTTGA+AGG | 0.640905 | 4.2:-35601336 | MS.gene062950:CDS |
| AGGCTATAACATTAAGAGTG+AGG | 0.656023 | 4.2:-35601316 | MS.gene062950:CDS |
| CATCAACCAAAATTGAGGTG+AGG | 0.663706 | 4.2:+35601625 | None:intergenic |
| CTAAGATGGATATACCAGCA+AGG | 0.682956 | 4.2:-35600370 | MS.gene062950:CDS |
| AGTGCATGGTCACCACTAGG+AGG | 0.692544 | 4.2:-35600757 | MS.gene062950:CDS |
| AAGATGGATATACCAGCAAG+GGG | 0.693926 | 4.2:-35600368 | MS.gene062950:CDS |
| GAGGTGAGGACTTCATGTGG+TGG | 0.731533 | 4.2:+35601639 | None:intergenic |
| ATTGAGGTGAGGACTTCATG+TGG | 0.753402 | 4.2:+35601636 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAGAATTAGAAAAAC+AGG | + | chr4.2:35601331-35601350 | None:intergenic | 15.0% |
| !! | AAAACATTGAAATATTTGAT+TGG | - | chr4.2:35601597-35601616 | MS.gene062950:CDS | 15.0% |
| !! | AAACATTGAAATATTTGATT+GGG | - | chr4.2:35601598-35601617 | MS.gene062950:CDS | 15.0% |
| !! | CAATATATAATATAAAGAGT+TGG | + | chr4.2:35601418-35601437 | None:intergenic | 15.0% |
| !!! | AACTTCACTAAATTTTTAAT+TGG | + | chr4.2:35601294-35601313 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTCTTTCTCAA+TGG | - | chr4.2:35601345-35601364 | MS.gene062950:CDS | 15.0% |
| !! | ATATTAGATACCATATGTAA+AGG | + | chr4.2:35600893-35600912 | None:intergenic | 20.0% |
| !! | TATTAGATACCATATGTAAA+GGG | + | chr4.2:35600892-35600911 | None:intergenic | 20.0% |
| !!! | ATCATTCCTTTTGATATAAA+AGG | - | chr4.2:35600609-35600628 | MS.gene062950:intron | 20.0% |
| !!! | ATTTTTAATTGGCTAAACAT+AGG | + | chr4.2:35601283-35601302 | None:intergenic | 20.0% |
| !!! | TAATTTTGTCTAATTCTTGT+TGG | + | chr4.2:35601631-35601650 | None:intergenic | 20.0% |
| !!! | TTTTGATATAAAAGGAACAT+GGG | - | chr4.2:35600617-35600636 | MS.gene062950:intron | 20.0% |
| !!! | TTTTGTTACAAATTCTTAGT+TGG | - | chr4.2:35601045-35601064 | MS.gene062950:intron | 20.0% |
| ! | ACAAATTCTTAGTTGGATTT+AGG | - | chr4.2:35601052-35601071 | MS.gene062950:intron | 25.0% |
| ! | ACATAGAGATCAAATACTAT+TGG | - | chr4.2:35600797-35600816 | MS.gene062950:CDS | 25.0% |
| ! | ATGGAAGAATGTTATAGATT+GGG | - | chr4.2:35600645-35600664 | MS.gene062950:intron | 25.0% |
| ! | GAAATGTTTGTATCTGATAA+TGG | - | chr4.2:35601683-35601702 | MS.gene062950:CDS | 25.0% |
| ! | TATGGAAGAATGTTATAGAT+TGG | - | chr4.2:35600644-35600663 | MS.gene062950:intron | 25.0% |
| ! | TTTCAATGTAACAGTAGTAT+AGG | + | chr4.2:35601472-35601491 | None:intergenic | 25.0% |
| !! | CATGTTCCTTTTATATCAAA+AGG | + | chr4.2:35600618-35600637 | None:intergenic | 25.0% |
| !! | CTTTTGATATAAAAGGAACA+TGG | - | chr4.2:35600616-35600635 | MS.gene062950:intron | 25.0% |
| !! | TCATTCTTTCTAGAAATTTC+TGG | - | chr4.2:35600920-35600939 | MS.gene062950:intron | 25.0% |
| !!! | TTGAAAGTCTATTTCTAATG+TGG | - | chr4.2:35601486-35601505 | MS.gene062950:CDS | 25.0% |
| !!! | TTTCCATTTTGAAATAACAG+AGG | + | chr4.2:35600826-35600845 | None:intergenic | 25.0% |
| AAAATAAATGATCTGCACCT+GGG | + | chr4.2:35601252-35601271 | None:intergenic | 30.0% | |
| AATAGCATCAACCAAAATTG+AGG | + | chr4.2:35600283-35600302 | None:intergenic | 30.0% | |
| AATTCTTAGTTGGATTTAGG+TGG | - | chr4.2:35601055-35601074 | MS.gene062950:intron | 30.0% | |
| ATTGTACAGAAAACTGAAGT+TGG | - | chr4.2:35600506-35600525 | MS.gene062950:intron | 30.0% | |
| ATTTCAAATATGCTTGCTTG+AGG | + | chr4.2:35600488-35600507 | None:intergenic | 30.0% | |
| CAGATATTTCCCTTTACATA+TGG | - | chr4.2:35600880-35600899 | MS.gene062950:intron | 30.0% | |
| TAAAATAAATGATCTGCACC+TGG | + | chr4.2:35601253-35601272 | None:intergenic | 30.0% | |
| TATAATACTGAAGAACCTCT+AGG | - | chr4.2:35600339-35600358 | MS.gene062950:CDS | 30.0% | |
| TCAATACTTTCTAATCGACT+AGG | - | chr4.2:35600964-35600983 | MS.gene062950:intron | 30.0% | |
| TTTCAAATATGCTTGCTTGA+GGG | + | chr4.2:35600487-35600506 | None:intergenic | 30.0% | |
| ! | TTGTTGAAGCTTTTCACAAT+GGG | + | chr4.2:35601563-35601582 | None:intergenic | 30.0% |
| !! | TTGCCTCTGTTATTTCAAAA+TGG | - | chr4.2:35600820-35600839 | MS.gene062950:CDS | 30.0% |
| AAAACTGAAGTTGGACTATG+TGG | - | chr4.2:35600515-35600534 | MS.gene062950:intron | 35.0% | |
| AGGCTATAACATTAAGAGTG+AGG | - | chr4.2:35600584-35600603 | MS.gene062950:intron | 35.0% | |
| AGGTTGAAACAAGATGTTGA+AGG | - | chr4.2:35600564-35600583 | MS.gene062950:intron | 35.0% | |
| ATTTGATTCACTTTCCAGTG+AGG | - | chr4.2:35600544-35600563 | MS.gene062950:intron | 35.0% | |
| CAATGGTCAAACTTTAGACT+TGG | - | chr4.2:35601362-35601381 | MS.gene062950:CDS | 35.0% | |
| CATTGTGAAAAGCTTCAACA+AGG | - | chr4.2:35601562-35601581 | MS.gene062950:CDS | 35.0% | |
| GATGTTCCAAAACCTATCAT+TGG | + | chr4.2:35600228-35600247 | None:intergenic | 35.0% | |
| TAAGATGGATATACCAGCAA+GGG | - | chr4.2:35601531-35601550 | MS.gene062950:CDS | 35.0% | |
| TATCTGACGTCTATGAGTAT+CGG | + | chr4.2:35600866-35600885 | None:intergenic | 35.0% | |
| TGAAAAGCTTCAACAAGGAA+AGG | - | chr4.2:35601567-35601586 | MS.gene062950:CDS | 35.0% | |
| TTATGCAGATAGCACTAAGA+TGG | - | chr4.2:35601516-35601535 | MS.gene062950:CDS | 35.0% | |
| ! | AAGATGCCAATGATAGGTTT+TGG | - | chr4.2:35600219-35600238 | MS.gene062950:CDS | 35.0% |
| ! | ATTAACTGCAGGAGAGATTT+TGG | + | chr4.2:35600736-35600755 | None:intergenic | 35.0% |
| ! | CTTGTTGAAGCTTTTCACAA+TGG | + | chr4.2:35601564-35601583 | None:intergenic | 35.0% |
| ! | GGAGGATACAAACTAAGTTT+TGG | - | chr4.2:35601161-35601180 | MS.gene062950:intron | 35.0% |
| ! | TAAAGAGTTGGTTCAAGATG+TGG | + | chr4.2:35601406-35601425 | None:intergenic | 35.0% |
| ! | TAATGGACCTTACAAAACCT+TGG | - | chr4.2:35601700-35601719 | MS.gene062950:CDS | 35.0% |
| ! | TTAAAGCTTTTGACACAGCT+TGG | + | chr4.2:35600365-35600384 | None:intergenic | 35.0% |
| ! | TTGGTTGATGCTATTGAAAC+AGG | - | chr4.2:35600288-35600307 | MS.gene062950:CDS | 35.0% |
| ! | TTTAGACTTGGTCATAGAAG+TGG | - | chr4.2:35601374-35601393 | MS.gene062950:CDS | 35.0% |
| !! | GTGTCAAAAGCTTTAAAGCT+AGG | - | chr4.2:35600369-35600388 | MS.gene062950:CDS | 35.0% |
| !! | TCTATTGGTGTTAGCAACTT+TGG | - | chr4.2:35600678-35600697 | MS.gene062950:CDS | 35.0% |
| AAAAGGAACATGGGAAGCTA+TGG | - | chr4.2:35600626-35600645 | MS.gene062950:intron | 40.0% | |
| AAGATGGATATACCAGCAAG+GGG | - | chr4.2:35601532-35601551 | MS.gene062950:CDS | 40.0% | |
| AAGGAATTCATGTGAGTGCA+TGG | - | chr4.2:35601129-35601148 | MS.gene062950:intron | 40.0% | |
| AATCTCTCCTGCAGTTAATC+AGG | - | chr4.2:35600737-35600756 | MS.gene062950:CDS | 40.0% | |
| AATGAACTCATCATGGCATC+AGG | - | chr4.2:35601079-35601098 | MS.gene062950:intron | 40.0% | |
| AGAGAATTCTGCAAGCAGAA+AGG | - | chr4.2:35601110-35601129 | MS.gene062950:intron | 40.0% | |
| AGCATCAGTACACCATAACT+TGG | + | chr4.2:35600430-35600449 | None:intergenic | 40.0% | |
| AGGTGGAAATGAACTCATCA+TGG | - | chr4.2:35601072-35601091 | MS.gene062950:intron | 40.0% | |
| ATGAACTCATCATGGCATCA+GGG | - | chr4.2:35601080-35601099 | MS.gene062950:intron | 40.0% | |
| ATTGAATTCTCCATCACTGC+AGG | + | chr4.2:35601191-35601210 | None:intergenic | 40.0% | |
| CAGAGGTGATGCTAAATTCA+GGG | - | chr4.2:35600193-35600212 | MS.gene062950:CDS | 40.0% | |
| CATCAACCAAAATTGAGGTG+AGG | + | chr4.2:35600278-35600297 | None:intergenic | 40.0% | |
| CTAAGATGGATATACCAGCA+AGG | - | chr4.2:35601530-35601549 | MS.gene062950:CDS | 40.0% | |
| GGGAAAAAGATGCCAATGAT+AGG | - | chr4.2:35600213-35600232 | MS.gene062950:CDS | 40.0% | |
| TCCTCAATGCAGACTTCTAA+AGG | - | chr4.2:35601658-35601677 | MS.gene062950:CDS | 40.0% | |
| TGTCATACCTGATTAACTGC+AGG | + | chr4.2:35600747-35600766 | None:intergenic | 40.0% | |
| TGTTCGTCACTTCCAAGTTA+TGG | - | chr4.2:35600415-35600434 | MS.gene062950:intron | 40.0% | |
| TTGGGCTTAGCAAAGTCTAT+TGG | - | chr4.2:35600663-35600682 | MS.gene062950:intron | 40.0% | |
| ! | ACATCTTGTTTCAACCTCAC+TGG | + | chr4.2:35600561-35600580 | None:intergenic | 40.0% |
| ! | ACCTTTAGAAGTCTGCATTG+AGG | + | chr4.2:35601662-35601681 | None:intergenic | 40.0% |
| ! | GTTCATCGCGATTTTTAACG+AGG | + | chr4.2:35600395-35600414 | None:intergenic | 40.0% |
| ! | TAGAAAGAAAAGTGTAGCCC+AGG | - | chr4.2:35601232-35601251 | MS.gene062950:CDS | 40.0% |
| ! | TGAAGTCCTCACCTCAATTT+TGG | - | chr4.2:35600269-35600288 | MS.gene062950:CDS | 40.0% |
| ! | TTTGGCACTTTCTAAGAGCA+TGG | + | chr4.2:35600718-35600737 | None:intergenic | 40.0% |
| !! | AGCTCTTCCAAGGTTTTGTA+AGG | + | chr4.2:35601710-35601729 | None:intergenic | 40.0% |
| !! | CTTAGTTTGTATCCTCCTAG+TGG | + | chr4.2:35601158-35601177 | None:intergenic | 40.0% |
| ACAAAACCTTGGAAGAGCTG+TGG | - | chr4.2:35601711-35601730 | MS.gene062950:CDS | 45.0% | |
| ATTGAGGTGAGGACTTCATG+TGG | + | chr4.2:35600267-35600286 | None:intergenic | 45.0% | |
| CAAAACCTTGGAAGAGCTGT+GGG | - | chr4.2:35601712-35601731 | MS.gene062950:CDS | 45.0% | |
| CAAATATGCTTGCTTGAGGG+TGG | + | chr4.2:35600484-35600503 | None:intergenic | 45.0% | |
| CCAGAGGTGATGCTAAATTC+AGG | - | chr4.2:35600192-35600211 | MS.gene062950:CDS | 45.0% | |
| CCTGAATTTAGCATCACCTC+TGG | + | chr4.2:35600195-35600214 | None:intergenic | 45.0% | |
| GGAAGCAAAGAAAGTTCCAG+AGG | - | chr4.2:35600176-35600195 | MS.gene062950:CDS | 45.0% | |
| TGAACTCATCATGGCATCAG+GGG | - | chr4.2:35601081-35601100 | MS.gene062950:intron | 45.0% | |
| !! | TTTTGAGAGCTGGGAGTACA+AGG | + | chr4.2:35600461-35600480 | None:intergenic | 45.0% |
| TTTGACACAGCTTGGCCTAG+AGG | + | chr4.2:35600357-35600376 | None:intergenic | 50.0% | |
| ! | AGGACTTCATGTGGTGGAGA+GGG | + | chr4.2:35600258-35600277 | None:intergenic | 50.0% |
| !!! | TGAGGGTGGTTTTGAGAGCT+GGG | + | chr4.2:35600470-35600489 | None:intergenic | 50.0% |
| !!! | TTGAGGGTGGTTTTGAGAGC+TGG | + | chr4.2:35600471-35600490 | None:intergenic | 50.0% |
| !!! | TTTTGGTTCGCCTGCAGTGA+TGG | - | chr4.2:35601178-35601197 | MS.gene062950:CDS | 50.0% |
| ACCTTGGAAGAGCTGTGGGA+CGG | - | chr4.2:35601716-35601735 | MS.gene062950:CDS | 55.0% | |
| AGTGCATGGTCACCACTAGG+AGG | - | chr4.2:35601143-35601162 | MS.gene062950:intron | 55.0% | |
| CAATGGGAATTGCCCCTTGC+TGG | + | chr4.2:35601547-35601566 | None:intergenic | 55.0% | |
| GAGGTGAGGACTTCATGTGG+TGG | + | chr4.2:35600264-35600283 | None:intergenic | 55.0% | |
| GTGAGTGCATGGTCACCACT+AGG | - | chr4.2:35601140-35601159 | MS.gene062950:intron | 55.0% | |
| ! | GAGCTGGGAGTACAAGGTCA+TGG | + | chr4.2:35600455-35600474 | None:intergenic | 55.0% |
| ! | GAGGACTTCATGTGGTGGAG+AGG | + | chr4.2:35600259-35600278 | None:intergenic | 55.0% |
| GCCGTCCCACAGCTCTTCCA+AGG | + | chr4.2:35601720-35601739 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 35600174 | 35601748 | 35600174 | ID=MS.gene062950 |
| chr4.2 | mRNA | 35600174 | 35601748 | 35600174 | ID=MS.gene062950.t1;Parent=MS.gene062950 |
| chr4.2 | exon | 35601164 | 35601748 | 35601164 | ID=MS.gene062950.t1.exon1;Parent=MS.gene062950.t1 |
| chr4.2 | CDS | 35601164 | 35601748 | 35601164 | ID=cds.MS.gene062950.t1;Parent=MS.gene062950.t1 |
| chr4.2 | exon | 35600669 | 35600848 | 35600669 | ID=MS.gene062950.t1.exon2;Parent=MS.gene062950.t1 |
| chr4.2 | CDS | 35600669 | 35600848 | 35600669 | ID=cds.MS.gene062950.t1;Parent=MS.gene062950.t1 |
| chr4.2 | exon | 35600174 | 35600398 | 35600174 | ID=MS.gene062950.t1.exon3;Parent=MS.gene062950.t1 |
| chr4.2 | CDS | 35600174 | 35600398 | 35600174 | ID=cds.MS.gene062950.t1;Parent=MS.gene062950.t1 |
| Gene Sequence |
| Protein sequence |
