Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50678.t1 | AES89310.1 | 86.5 | 311 | 17 | 1 | 1 | 286 | 10 | 320 | 4.20E-149 | 537.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50678.t1 | E7C196 | 55.3 | 318 | 110 | 2 | 1 | 286 | 9 | 326 | 3.5e-96 | 352.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50678.t1 | G7JL35 | 86.5 | 311 | 17 | 1 | 1 | 286 | 10 | 320 | 3.0e-149 | 537.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056748 | MS.gene50678 | 0.82205 | 2.91E-53 | -1.69E-46 |
| MS.gene057819 | MS.gene50678 | 0.86998 | 2.06E-66 | -1.69E-46 |
| MS.gene057820 | MS.gene50678 | 0.804488 | 2.11E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50678.t1 | MTR_4g072360 | 86.495 | 311 | 17 | 1 | 1 | 286 | 10 | 320 | 0.0 | 545 |
| MS.gene50678.t1 | MTR_4g072350 | 82.372 | 312 | 30 | 1 | 1 | 287 | 10 | 321 | 0.0 | 526 |
| MS.gene50678.t1 | MTR_4g072320 | 75.884 | 311 | 44 | 3 | 1 | 286 | 10 | 314 | 4.95e-170 | 473 |
| MS.gene50678.t1 | MTR_6g073110 | 57.605 | 309 | 106 | 1 | 1 | 284 | 10 | 318 | 2.22e-132 | 378 |
| MS.gene50678.t1 | MTR_0374s0050 | 47.697 | 304 | 126 | 2 | 8 | 286 | 20 | 315 | 1.46e-94 | 282 |
| MS.gene50678.t1 | MTR_3g083130 | 46.732 | 306 | 125 | 6 | 6 | 284 | 19 | 313 | 1.00e-86 | 262 |
| MS.gene50678.t1 | MTR_5g097900 | 44.554 | 303 | 133 | 6 | 7 | 284 | 19 | 311 | 3.62e-76 | 235 |
| MS.gene50678.t1 | MTR_5g097910 | 45.745 | 282 | 127 | 4 | 7 | 264 | 19 | 298 | 4.30e-76 | 234 |
| MS.gene50678.t1 | MTR_5g097940 | 45.745 | 282 | 127 | 4 | 7 | 264 | 19 | 298 | 4.30e-76 | 234 |
| MS.gene50678.t1 | MTR_4g036845 | 41.935 | 310 | 152 | 6 | 2 | 286 | 8 | 314 | 6.74e-76 | 234 |
| MS.gene50678.t1 | MTR_8g070095 | 40.064 | 312 | 157 | 5 | 2 | 286 | 10 | 318 | 1.25e-74 | 231 |
| MS.gene50678.t1 | MTR_8g070115 | 39.032 | 310 | 159 | 5 | 2 | 286 | 10 | 314 | 5.73e-68 | 214 |
| MS.gene50678.t1 | MTR_6g072650 | 66.000 | 150 | 29 | 1 | 138 | 287 | 10 | 137 | 3.64e-66 | 203 |
| MS.gene50678.t1 | MTR_4g021350 | 38.291 | 316 | 151 | 8 | 2 | 286 | 10 | 312 | 6.13e-64 | 203 |
| MS.gene50678.t1 | MTR_7g063580 | 39.032 | 310 | 158 | 6 | 2 | 286 | 50 | 353 | 2.84e-61 | 198 |
| MS.gene50678.t1 | MTR_4g021410 | 39.355 | 310 | 143 | 8 | 2 | 284 | 11 | 302 | 1.04e-58 | 190 |
| MS.gene50678.t1 | MTR_4g021450 | 39.103 | 312 | 145 | 8 | 2 | 286 | 11 | 304 | 3.58e-58 | 188 |
| MS.gene50678.t1 | MTR_4g021350 | 37.370 | 289 | 138 | 7 | 2 | 260 | 10 | 285 | 3.05e-54 | 178 |
| MS.gene50678.t1 | MTR_4g021410 | 40.072 | 277 | 126 | 6 | 34 | 284 | 3 | 265 | 2.03e-53 | 175 |
| MS.gene50678.t1 | MTR_7g070500 | 33.333 | 309 | 173 | 7 | 2 | 284 | 17 | 318 | 4.57e-50 | 168 |
| MS.gene50678.t1 | MTR_4g021450 | 43.265 | 245 | 118 | 5 | 43 | 286 | 4 | 228 | 8.35e-49 | 162 |
| MS.gene50678.t1 | MTR_4g021450 | 44.974 | 189 | 99 | 2 | 99 | 286 | 1 | 185 | 9.40e-48 | 157 |
| MS.gene50678.t1 | MTR_4g021410 | 44.554 | 202 | 98 | 4 | 84 | 284 | 38 | 226 | 1.19e-47 | 159 |
| MS.gene50678.t1 | MTR_4g072060 | 34.708 | 291 | 155 | 5 | 2 | 260 | 5 | 292 | 6.49e-47 | 159 |
| MS.gene50678.t1 | MTR_6g072710 | 63.551 | 107 | 39 | 0 | 156 | 262 | 1 | 107 | 3.34e-45 | 149 |
| MS.gene50678.t1 | MTR_7g070500 | 32.384 | 281 | 160 | 4 | 2 | 259 | 17 | 290 | 1.56e-44 | 153 |
| MS.gene50678.t1 | MTR_6g072705 | 59.322 | 59 | 19 | 1 | 60 | 118 | 32 | 85 | 2.14e-18 | 78.6 |
| MS.gene50678.t1 | MTR_3g092140 | 25.442 | 283 | 163 | 7 | 24 | 260 | 70 | 350 | 8.86e-14 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50678.t1 | AT1G59960 | 44.918 | 305 | 142 | 2 | 8 | 286 | 21 | 325 | 7.86e-96 | 285 |
| MS.gene50678.t1 | AT1G59950 | 44.590 | 305 | 143 | 3 | 8 | 286 | 15 | 319 | 7.74e-88 | 265 |
| MS.gene50678.t1 | AT2G37790 | 42.765 | 311 | 145 | 5 | 2 | 286 | 10 | 313 | 6.05e-78 | 239 |
| MS.gene50678.t1 | AT2G37770 | 42.258 | 310 | 149 | 5 | 2 | 286 | 10 | 314 | 6.69e-76 | 234 |
| MS.gene50678.t1 | AT3G53880 | 41.801 | 311 | 149 | 5 | 2 | 286 | 10 | 314 | 3.42e-72 | 225 |
| MS.gene50678.t1 | AT5G62420 | 40.193 | 311 | 157 | 6 | 2 | 286 | 8 | 315 | 4.25e-71 | 222 |
| MS.gene50678.t1 | AT2G37760 | 39.550 | 311 | 152 | 5 | 2 | 286 | 10 | 310 | 4.10e-70 | 219 |
| MS.gene50678.t1 | AT2G37760 | 39.550 | 311 | 152 | 5 | 2 | 286 | 10 | 310 | 4.10e-70 | 219 |
| MS.gene50678.t1 | AT2G37760 | 39.236 | 288 | 140 | 4 | 2 | 264 | 10 | 287 | 9.18e-64 | 202 |
| MS.gene50678.t1 | AT2G37760 | 39.236 | 288 | 140 | 4 | 2 | 264 | 10 | 287 | 9.18e-64 | 202 |
| MS.gene50678.t1 | AT2G37760 | 39.510 | 286 | 138 | 4 | 2 | 262 | 10 | 285 | 1.68e-63 | 202 |
| MS.gene50678.t1 | AT3G53880 | 40.493 | 284 | 138 | 4 | 2 | 260 | 10 | 287 | 2.47e-61 | 197 |
| MS.gene50678.t1 | AT5G01670 | 36.656 | 311 | 160 | 10 | 2 | 284 | 18 | 319 | 3.53e-58 | 189 |
| MS.gene50678.t1 | AT2G37760 | 40.304 | 263 | 147 | 4 | 25 | 286 | 11 | 264 | 3.40e-57 | 184 |
| MS.gene50678.t1 | AT2G37760 | 40.304 | 263 | 147 | 4 | 25 | 286 | 11 | 264 | 3.40e-57 | 184 |
| MS.gene50678.t1 | AT2G21260 | 32.990 | 291 | 160 | 5 | 2 | 260 | 5 | 292 | 2.71e-54 | 179 |
| MS.gene50678.t1 | AT2G21250 | 32.990 | 291 | 160 | 5 | 2 | 260 | 5 | 292 | 2.98e-54 | 178 |
| MS.gene50678.t1 | AT5G01670 | 33.728 | 338 | 160 | 10 | 2 | 284 | 18 | 346 | 6.58e-54 | 179 |
| MS.gene50678.t1 | AT2G37770 | 43.500 | 200 | 84 | 4 | 2 | 177 | 10 | 204 | 1.39e-45 | 155 |
| MS.gene50678.t1 | AT2G21260 | 33.333 | 198 | 122 | 3 | 73 | 260 | 27 | 224 | 3.94e-38 | 135 |
| MS.gene50678.t1 | AT2G21250 | 33.190 | 232 | 120 | 5 | 2 | 201 | 5 | 233 | 4.37e-38 | 134 |
Find 61 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGTCCTCACCTCAATTT+TGG | 0.191008 | 4.3:-33500261 | MS.gene50678:CDS |
| ATTAACTGCAGGAGAGATTT+TGG | 0.209158 | 4.3:+33499718 | None:intergenic |
| TTGGTTGATGCCATTGAAAT+AGG | 0.299974 | 4.3:-33500242 | MS.gene50678:CDS |
| AAGATGCCAATGATAGGTTT+TGG | 0.319452 | 4.3:-33500311 | MS.gene50678:CDS |
| GGAGGATACAAACTAAGTTT+TGG | 0.339924 | 4.3:-33499290 | MS.gene50678:CDS |
| CAATGGGAATTGCCCCTTGC+TGG | 0.340720 | 4.3:+33498910 | None:intergenic |
| AAAACATTGAAATATTTGAT+TGG | 0.366649 | 4.3:-33498857 | MS.gene50678:CDS |
| AATCTCTCCTGCAGTTAATC+AGG | 0.372724 | 4.3:-33499714 | MS.gene50678:intron |
| GAAATGTTTGTATCTGATAA+TGG | 0.381759 | 4.3:-33498771 | MS.gene50678:CDS |
| TCTATTGGTGTTAGCAACTT+TGG | 0.384780 | 4.3:-33499773 | MS.gene50678:CDS |
| CCAGAGGTGATGCTAAATTC+AGG | 0.396623 | 4.3:-33500338 | None:intergenic |
| AAACATTGAAATATTTGATT+GGG | 0.403714 | 4.3:-33498856 | MS.gene50678:CDS |
| TATGGAAGAATGTTATAGAT+TGG | 0.404875 | 4.3:-33499807 | MS.gene50678:CDS |
| AATGAACTCATCATGGCATC+AGG | 0.418023 | 4.3:-33499372 | MS.gene50678:CDS |
| GATGTTCCAAAACCTATCAT+TGG | 0.419966 | 4.3:+33500305 | None:intergenic |
| ATGGAAGAATGTTATAGATT+GGG | 0.431421 | 4.3:-33499806 | MS.gene50678:CDS |
| ATTGTACAGAAAACTGAAGT+TGG | 0.437712 | 4.3:-33499945 | MS.gene50678:intron |
| TTGGGCTTAGCAAAGTCTAT+TGG | 0.442567 | 4.3:-33499788 | MS.gene50678:CDS |
| ACATCTTGTTTCAACCTCAC+TGG | 0.444084 | 4.3:+33499893 | None:intergenic |
| TCCTCAATGCAGACTTCTAA+AGG | 0.473407 | 4.3:-33498796 | MS.gene50678:CDS |
| AAAAGGAACATGGGAAGCTA+TGG | 0.478713 | 4.3:-33499825 | MS.gene50678:CDS |
| AATGGCATCAACCAAAATTG+AGG | 0.495834 | 4.3:+33500250 | None:intergenic |
| TTTGGCACTTTCTAAGAGCA+TGG | 0.509300 | 4.3:+33499736 | None:intergenic |
| GCCGTCCCACAGCTCTTCCA+AGG | 0.512840 | 4.3:+33498737 | None:intergenic |
| GTGTCAAAAGCTTTAAAGCT+AGG | 0.516792 | 4.3:-33500161 | MS.gene50678:CDS |
| TTATGCAGATAGCACTAAGA+TGG | 0.518946 | 4.3:-33498938 | MS.gene50678:intron |
| TAATGGACCTTACAAAACCT+TGG | 0.524158 | 4.3:-33498754 | MS.gene50678:CDS |
| CAGAGGTGATGCTAAATTCA+GGG | 0.531151 | 4.3:-33500337 | None:intergenic |
| ATTGAATTCTCCATCACTGC+AGG | 0.533560 | 4.3:+33499263 | None:intergenic |
| AAAACTGAAGTTGGACTATG+TGG | 0.535532 | 4.3:-33499936 | MS.gene50678:CDS |
| ATGCCTGTAGCCTATTTCAA+TGG | 0.544065 | 4.3:+33500232 | None:intergenic |
| ATGCCATTGAAATAGGCTAC+AGG | 0.548301 | 4.3:-33500235 | MS.gene50678:CDS |
| AGGACATCATGTGGTGGAGA+GGG | 0.552325 | 4.3:+33500275 | None:intergenic |
| TGAAAAGCTTCAACAAGGAA+AGG | 0.559851 | 4.3:-33498887 | MS.gene50678:CDS |
| ACCTTTAGAAGTCTGCATTG+AGG | 0.563304 | 4.3:+33498795 | None:intergenic |
| AGGTGGAAATGAACTCATCA+TGG | 0.565825 | 4.3:-33499379 | MS.gene50678:CDS |
| AGAGAATTCTGCAAGCAGAA+AGG | 0.568462 | 4.3:-33499341 | MS.gene50678:CDS |
| TGTCATACCTGATTAACTGC+AGG | 0.568797 | 4.3:+33499707 | None:intergenic |
| ATTTGATTCACTTTCCAGTG+AGG | 0.573209 | 4.3:-33499907 | MS.gene50678:CDS |
| CAAAACCTTGGAAGAGCTGT+GGG | 0.578336 | 4.3:-33498742 | MS.gene50678:CDS |
| TAAGATGGATATACCAGCAA+GGG | 0.578343 | 4.3:-33498923 | MS.gene50678:CDS |
| TAGAAAGAAAAGTGTAGCCC+AGG | 0.580823 | 4.3:-33499219 | MS.gene50678:intron |
| GTGAGTGCATGGTCACCACT+AGG | 0.581102 | 4.3:-33499311 | MS.gene50678:CDS |
| AAGGAATTCATGTGAGTGCA+TGG | 0.584602 | 4.3:-33499322 | MS.gene50678:CDS |
| GAGGACATCATGTGGTGGAG+AGG | 0.593214 | 4.3:+33500274 | None:intergenic |
| TATAATACTGAAGAACCTCT+AGG | 0.593820 | 4.3:-33500191 | MS.gene50678:CDS |
| TTTGACACAGCTTGGCCTAG+AGG | 0.596039 | 4.3:+33500176 | None:intergenic |
| ATGAACTCATCATGGCATCA+GGG | 0.596474 | 4.3:-33499371 | MS.gene50678:CDS |
| ACCTTGGAAGAGCTGTGGGA+CGG | 0.612908 | 4.3:-33498738 | MS.gene50678:CDS |
| ACAAAACCTTGGAAGAGCTG+TGG | 0.614469 | 4.3:-33498743 | MS.gene50678:CDS |
| TGAACTCATCATGGCATCAG+GGG | 0.614858 | 4.3:-33499370 | MS.gene50678:CDS |
| CATTGTGAAAAGCTTCAACA+AGG | 0.618998 | 4.3:-33498892 | MS.gene50678:CDS |
| CTTAGTTTGTATCCTCCTAG+TGG | 0.632741 | 4.3:+33499296 | None:intergenic |
| AGGTTGAAACAAGATGTTGA+AGG | 0.640905 | 4.3:-33499887 | MS.gene50678:CDS |
| AGGCTATAACATTAAGAGTG+AGG | 0.656023 | 4.3:-33499867 | MS.gene50678:CDS |
| CTAAGATGGATATACCAGCA+AGG | 0.682956 | 4.3:-33498924 | MS.gene50678:CDS |
| CATCAACCAAAATTGAGGTG+AGG | 0.683706 | 4.3:+33500255 | None:intergenic |
| AGTGCATGGTCACCACTAGG+AGG | 0.692544 | 4.3:-33499308 | MS.gene50678:CDS |
| AAGATGGATATACCAGCAAG+GGG | 0.693926 | 4.3:-33498922 | MS.gene50678:CDS |
| GAGGTGAGGACATCATGTGG+TGG | 0.741328 | 4.3:+33500269 | None:intergenic |
| ATTGAGGTGAGGACATCATG+TGG | 0.753402 | 4.3:+33500266 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAGAATTAGAAAAAC+AGG | + | chr4.3:33499936-33499955 | None:intergenic | 15.0% |
| !! | AAAACATTGAAATATTTGAT+TGG | - | chr4.3:33500200-33500219 | MS.gene50678:CDS | 15.0% |
| !! | AAACATTGAAATATTTGATT+GGG | - | chr4.3:33500201-33500220 | MS.gene50678:CDS | 15.0% |
| !! | CAATATATAATATAAAGAGT+TGG | + | chr4.3:33500021-33500040 | None:intergenic | 15.0% |
| !!! | AACTTCACTAAATTTTTAAT+TGG | + | chr4.3:33499899-33499918 | None:intergenic | 15.0% |
| !!! | TACTTGTCTAATTTTATTTT+TGG | - | chr4.3:33499083-33499102 | MS.gene50678:intron | 15.0% |
| !! | ATATTAGATACCATATGTAA+AGG | + | chr4.3:33499499-33499518 | None:intergenic | 20.0% |
| !! | TATTAGATACCATATGTAAA+GGG | + | chr4.3:33499498-33499517 | None:intergenic | 20.0% |
| !!! | ATCATTCCTTTTGATATAAA+AGG | - | chr4.3:33499215-33499234 | MS.gene50678:intron | 20.0% |
| !!! | ATTTTTAATTGGCTAAACAT+AGG | + | chr4.3:33499888-33499907 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTTTCTTTCTCAA+TGG | - | chr4.3:33499948-33499967 | MS.gene50678:intron | 20.0% |
| !!! | TAATTTTGTCTAATTCTTGT+TGG | + | chr4.3:33500234-33500253 | None:intergenic | 20.0% |
| !!! | TTTTGATATAAAAGGAACAT+GGG | - | chr4.3:33499223-33499242 | MS.gene50678:CDS | 20.0% |
| !!! | TTTTGTTACAAATTCTTAGT+TGG | - | chr4.3:33499651-33499670 | MS.gene50678:intron | 20.0% |
| ! | ACAAATTCTTAGTTGGATTT+AGG | - | chr4.3:33499658-33499677 | MS.gene50678:intron | 25.0% |
| ! | ACATAGAGATCAAATACTAT+TGG | - | chr4.3:33499403-33499422 | MS.gene50678:intron | 25.0% |
| ! | ATGGAAGAATGTTATAGATT+GGG | - | chr4.3:33499251-33499270 | MS.gene50678:CDS | 25.0% |
| ! | GAAATGTTTGTATCTGATAA+TGG | - | chr4.3:33500286-33500305 | MS.gene50678:CDS | 25.0% |
| ! | TATGGAAGAATGTTATAGAT+TGG | - | chr4.3:33499250-33499269 | MS.gene50678:CDS | 25.0% |
| ! | TTTCAATGTAACAGTAGTAT+AGG | + | chr4.3:33500075-33500094 | None:intergenic | 25.0% |
| !! | CATGTTCCTTTTATATCAAA+AGG | + | chr4.3:33499224-33499243 | None:intergenic | 25.0% |
| !! | CTTTTGATATAAAAGGAACA+TGG | - | chr4.3:33499222-33499241 | MS.gene50678:CDS | 25.0% |
| !! | TCATTCTTTCTAGAAATTTC+TGG | - | chr4.3:33499526-33499545 | MS.gene50678:intron | 25.0% |
| !!! | TTGAAAGTCTATTTCTAATG+TGG | - | chr4.3:33500089-33500108 | MS.gene50678:intron | 25.0% |
| !!! | TTTCCATTTTGAAATAACAG+AGG | + | chr4.3:33499432-33499451 | None:intergenic | 25.0% |
| AATCACAAACGTAAAAGAAG+CGG | + | chr4.3:33499058-33499077 | None:intergenic | 30.0% | |
| AATTCTTAGTTGGATTTAGG+TGG | - | chr4.3:33499661-33499680 | MS.gene50678:intron | 30.0% | |
| ATTGTACAGAAAACTGAAGT+TGG | - | chr4.3:33499112-33499131 | MS.gene50678:intron | 30.0% | |
| CAGATATTTCCCTTTACATA+TGG | - | chr4.3:33499486-33499505 | MS.gene50678:intron | 30.0% | |
| TATAATACTGAAGAACCTCT+AGG | - | chr4.3:33498866-33498885 | MS.gene50678:CDS | 30.0% | |
| TCAATACTTTCTAATCGACT+AGG | - | chr4.3:33499570-33499589 | MS.gene50678:intron | 30.0% | |
| ! | TTGTTGAAGCTTTTCACAAT+GGG | + | chr4.3:33500166-33500185 | None:intergenic | 30.0% |
| !! | TTGCCTCTGTTATTTCAAAA+TGG | - | chr4.3:33499426-33499445 | MS.gene50678:intron | 30.0% |
| AAAACTGAAGTTGGACTATG+TGG | - | chr4.3:33499121-33499140 | MS.gene50678:intron | 35.0% | |
| AAGAGAAATATGCTTGCTTG+AGG | + | chr4.3:33499015-33499034 | None:intergenic | 35.0% | |
| AATGGCATCAACCAAAATTG+AGG | + | chr4.3:33498810-33498829 | None:intergenic | 35.0% | |
| AGAGAAATATGCTTGCTTGA+GGG | + | chr4.3:33499014-33499033 | None:intergenic | 35.0% | |
| AGGCTATAACATTAAGAGTG+AGG | - | chr4.3:33499190-33499209 | MS.gene50678:intron | 35.0% | |
| AGGTTGAAACAAGATGTTGA+AGG | - | chr4.3:33499170-33499189 | MS.gene50678:intron | 35.0% | |
| ATAAAATAATGAGCTGCACC+TGG | + | chr4.3:33499859-33499878 | None:intergenic | 35.0% | |
| ATTTGATTCACTTTCCAGTG+AGG | - | chr4.3:33499150-33499169 | MS.gene50678:intron | 35.0% | |
| CAATGGTCAAACTTTAGACT+TGG | - | chr4.3:33499965-33499984 | MS.gene50678:intron | 35.0% | |
| CATTGTGAAAAGCTTCAACA+AGG | - | chr4.3:33500165-33500184 | MS.gene50678:CDS | 35.0% | |
| GATGTTCCAAAACCTATCAT+TGG | + | chr4.3:33498755-33498774 | None:intergenic | 35.0% | |
| TAAAATAATGAGCTGCACCT+GGG | + | chr4.3:33499858-33499877 | None:intergenic | 35.0% | |
| TAAGATGGATATACCAGCAA+GGG | - | chr4.3:33500134-33500153 | MS.gene50678:intron | 35.0% | |
| TATCTGACGTCTATGAGTAT+CGG | + | chr4.3:33499472-33499491 | None:intergenic | 35.0% | |
| TGAAAAGCTTCAACAAGGAA+AGG | - | chr4.3:33500170-33500189 | MS.gene50678:CDS | 35.0% | |
| TGTTCGTTACTTCCAAGTTA+TGG | - | chr4.3:33498942-33498961 | MS.gene50678:intron | 35.0% | |
| TTATGCAGATAGCACTAAGA+TGG | - | chr4.3:33500119-33500138 | MS.gene50678:intron | 35.0% | |
| ! | AAGATGCCAATGATAGGTTT+TGG | - | chr4.3:33498746-33498765 | MS.gene50678:CDS | 35.0% |
| ! | ATTAACTGCAGGAGAGATTT+TGG | + | chr4.3:33499342-33499361 | None:intergenic | 35.0% |
| ! | CTTGTTGAAGCTTTTCACAA+TGG | + | chr4.3:33500167-33500186 | None:intergenic | 35.0% |
| ! | GGAGGATACAAACTAAGTTT+TGG | - | chr4.3:33499767-33499786 | MS.gene50678:CDS | 35.0% |
| ! | GTTCATCGCGATTTTTAATG+AGG | + | chr4.3:33498922-33498941 | None:intergenic | 35.0% |
| ! | TAAAGAGTTGGTTCAAGATG+TGG | + | chr4.3:33500009-33500028 | None:intergenic | 35.0% |
| ! | TAATGGACCTTACAAAACCT+TGG | - | chr4.3:33500303-33500322 | MS.gene50678:CDS | 35.0% |
| ! | TTAAAGCTTTTGACACAGCT+TGG | + | chr4.3:33498892-33498911 | None:intergenic | 35.0% |
| ! | TTGGTTGATGCCATTGAAAT+AGG | - | chr4.3:33498815-33498834 | MS.gene50678:CDS | 35.0% |
| ! | TTTAGACTTGGTCATAGAAG+TGG | - | chr4.3:33499977-33499996 | MS.gene50678:intron | 35.0% |
| !! | GTGTCAAAAGCTTTAAAGCT+AGG | - | chr4.3:33498896-33498915 | MS.gene50678:CDS | 35.0% |
| !! | TCTATTGGTGTTAGCAACTT+TGG | - | chr4.3:33499284-33499303 | MS.gene50678:CDS | 35.0% |
| AAAAGGAACATGGGAAGCTA+TGG | - | chr4.3:33499232-33499251 | MS.gene50678:CDS | 40.0% | |
| AAGATGGATATACCAGCAAG+GGG | - | chr4.3:33500135-33500154 | MS.gene50678:intron | 40.0% | |
| AAGGAATTCATGTGAGTGCA+TGG | - | chr4.3:33499735-33499754 | MS.gene50678:CDS | 40.0% | |
| AATCTCTCCTGCAGTTAATC+AGG | - | chr4.3:33499343-33499362 | MS.gene50678:CDS | 40.0% | |
| AATGAACTCATCATGGCATC+AGG | - | chr4.3:33499685-33499704 | MS.gene50678:intron | 40.0% | |
| AGAGAATTCTGCAAGCAGAA+AGG | - | chr4.3:33499716-33499735 | MS.gene50678:CDS | 40.0% | |
| AGCATCAGTACACCATAACT+TGG | + | chr4.3:33498957-33498976 | None:intergenic | 40.0% | |
| AGGTGGAAATGAACTCATCA+TGG | - | chr4.3:33499678-33499697 | MS.gene50678:intron | 40.0% | |
| ATGAACTCATCATGGCATCA+GGG | - | chr4.3:33499686-33499705 | MS.gene50678:intron | 40.0% | |
| ATGCCATTGAAATAGGCTAC+AGG | - | chr4.3:33498822-33498841 | MS.gene50678:CDS | 40.0% | |
| ATGCCTGTAGCCTATTTCAA+TGG | + | chr4.3:33498828-33498847 | None:intergenic | 40.0% | |
| ATTGAATTCTCCATCACTGC+AGG | + | chr4.3:33499797-33499816 | None:intergenic | 40.0% | |
| CATCAACCAAAATTGAGGTG+AGG | + | chr4.3:33498805-33498824 | None:intergenic | 40.0% | |
| CTAAGATGGATATACCAGCA+AGG | - | chr4.3:33500133-33500152 | MS.gene50678:intron | 40.0% | |
| GGGAAAAAGATGCCAATGAT+AGG | - | chr4.3:33498740-33498759 | MS.gene50678:CDS | 40.0% | |
| TCCTCAATGCAGACTTCTAA+AGG | - | chr4.3:33500261-33500280 | MS.gene50678:CDS | 40.0% | |
| TGTCATACCTGATTAACTGC+AGG | + | chr4.3:33499353-33499372 | None:intergenic | 40.0% | |
| TTGGGCTTAGCAAAGTCTAT+TGG | - | chr4.3:33499269-33499288 | MS.gene50678:CDS | 40.0% | |
| ! | ACATCTTGTTTCAACCTCAC+TGG | + | chr4.3:33499167-33499186 | None:intergenic | 40.0% |
| ! | ACCTTTAGAAGTCTGCATTG+AGG | + | chr4.3:33500265-33500284 | None:intergenic | 40.0% |
| ! | TAGAAAGAAAAGTGTAGCCC+AGG | - | chr4.3:33499838-33499857 | MS.gene50678:CDS | 40.0% |
| ! | TGATGTCCTCACCTCAATTT+TGG | - | chr4.3:33498796-33498815 | MS.gene50678:CDS | 40.0% |
| ! | TTTGGCACTTTCTAAGAGCA+TGG | + | chr4.3:33499324-33499343 | None:intergenic | 40.0% |
| !! | AGCTCTTCCAAGGTTTTGTA+AGG | + | chr4.3:33500313-33500332 | None:intergenic | 40.0% |
| !! | CTTAGTTTGTATCCTCCTAG+TGG | + | chr4.3:33499764-33499783 | None:intergenic | 40.0% |
| ACAAAACCTTGGAAGAGCTG+TGG | - | chr4.3:33500314-33500333 | MS.gene50678:CDS | 45.0% | |
| ATTGAGGTGAGGACATCATG+TGG | + | chr4.3:33498794-33498813 | None:intergenic | 45.0% | |
| CAAAACCTTGGAAGAGCTGT+GGG | - | chr4.3:33500315-33500334 | MS.gene50678:CDS | 45.0% | |
| GAAATATGCTTGCTTGAGGG+TGG | + | chr4.3:33499011-33499030 | None:intergenic | 45.0% | |
| TGAACTCATCATGGCATCAG+GGG | - | chr4.3:33499687-33499706 | MS.gene50678:intron | 45.0% | |
| !! | TTTTGAGAGCTGGGAGTACA+AGG | + | chr4.3:33498988-33499007 | None:intergenic | 45.0% |
| TTTGACACAGCTTGGCCTAG+AGG | + | chr4.3:33498884-33498903 | None:intergenic | 50.0% | |
| ! | AGGACATCATGTGGTGGAGA+GGG | + | chr4.3:33498785-33498804 | None:intergenic | 50.0% |
| !!! | TGAGGGTGGTTTTGAGAGCT+GGG | + | chr4.3:33498997-33499016 | None:intergenic | 50.0% |
| !!! | TTGAGGGTGGTTTTGAGAGC+TGG | + | chr4.3:33498998-33499017 | None:intergenic | 50.0% |
| !!! | TTTTGGTTCGCCTGCAGTGA+TGG | - | chr4.3:33499784-33499803 | MS.gene50678:CDS | 50.0% |
| ACCTTGGAAGAGCTGTGGGA+CGG | - | chr4.3:33500319-33500338 | MS.gene50678:CDS | 55.0% | |
| AGTGCATGGTCACCACTAGG+AGG | - | chr4.3:33499749-33499768 | MS.gene50678:CDS | 55.0% | |
| CAATGGGAATTGCCCCTTGC+TGG | + | chr4.3:33500150-33500169 | None:intergenic | 55.0% | |
| GAGGTGAGGACATCATGTGG+TGG | + | chr4.3:33498791-33498810 | None:intergenic | 55.0% | |
| GTGAGTGCATGGTCACCACT+AGG | - | chr4.3:33499746-33499765 | MS.gene50678:CDS | 55.0% | |
| ! | GAGCTGGGAGTACAAGGTCA+TGG | + | chr4.3:33498982-33499001 | None:intergenic | 55.0% |
| ! | GAGGACATCATGTGGTGGAG+AGG | + | chr4.3:33498786-33498805 | None:intergenic | 55.0% |
| GCCGTCCCACAGCTCTTCCA+AGG | + | chr4.3:33500323-33500342 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 33498728 | 33500351 | 33498728 | ID=MS.gene50678 |
| chr4.3 | mRNA | 33498728 | 33500351 | 33498728 | ID=MS.gene50678.t1;Parent=MS.gene50678 |
| chr4.3 | exon | 33500137 | 33500351 | 33500137 | ID=MS.gene50678.t1.exon1;Parent=MS.gene50678.t1 |
| chr4.3 | CDS | 33500137 | 33500351 | 33500137 | ID=cds.MS.gene50678.t1;Parent=MS.gene50678.t1 |
| chr4.3 | exon | 33499715 | 33499958 | 33499715 | ID=MS.gene50678.t1.exon2;Parent=MS.gene50678.t1 |
| chr4.3 | CDS | 33499715 | 33499958 | 33499715 | ID=cds.MS.gene50678.t1;Parent=MS.gene50678.t1 |
| chr4.3 | exon | 33499220 | 33499399 | 33499220 | ID=MS.gene50678.t1.exon3;Parent=MS.gene50678.t1 |
| chr4.3 | CDS | 33499220 | 33499399 | 33499220 | ID=cds.MS.gene50678.t1;Parent=MS.gene50678.t1 |
| chr4.3 | exon | 33498728 | 33498952 | 33498728 | ID=MS.gene50678.t1.exon4;Parent=MS.gene50678.t1 |
| chr4.3 | CDS | 33498728 | 33498952 | 33498728 | ID=cds.MS.gene50678.t1;Parent=MS.gene50678.t1 |
| Gene Sequence |
| Protein sequence |
