Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057906.t1 | XP_013466155.1 | 92.7 | 150 | 11 | 0 | 1 | 150 | 1 | 150 | 1.70E-72 | 282.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057906.t1 | Q8GY84 | 53.3 | 150 | 68 | 1 | 1 | 148 | 258 | 407 | 5.0e-36 | 152.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057906.t1 | A0A072VDU5 | 92.7 | 150 | 11 | 0 | 1 | 150 | 1 | 150 | 1.3e-72 | 282.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene057906.t1 | TF | GARP-G2-like |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene057906 | MS.gene24160 | 0.867226 | 1.60E-65 | -1.69E-46 |
MS.gene057906 | MS.gene34524 | 0.886319 | 3.79E-72 | -1.69E-46 |
MS.gene057906 | MS.gene36713 | 0.861024 | 1.37E-63 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057906.t1 | MTR_1g023070 | 92.667 | 150 | 11 | 0 | 1 | 150 | 1 | 150 | 4.27e-93 | 271 |
MS.gene057906.t1 | MTR_1g023070 | 92.667 | 150 | 11 | 0 | 1 | 150 | 1 | 150 | 1.42e-92 | 268 |
MS.gene057906.t1 | MTR_1g009617 | 86.400 | 125 | 17 | 0 | 26 | 150 | 167 | 291 | 2.27e-74 | 229 |
MS.gene057906.t1 | MTR_5g069330 | 68.667 | 150 | 46 | 1 | 1 | 150 | 248 | 396 | 4.05e-68 | 214 |
MS.gene057906.t1 | MTR_5g069330 | 68.667 | 150 | 46 | 1 | 1 | 150 | 244 | 392 | 4.63e-68 | 214 |
MS.gene057906.t1 | MTR_7g056830 | 60.000 | 150 | 58 | 1 | 1 | 148 | 248 | 397 | 9.34e-48 | 162 |
MS.gene057906.t1 | MTR_6g082080 | 60.000 | 150 | 58 | 1 | 1 | 148 | 248 | 397 | 1.15e-47 | 162 |
MS.gene057906.t1 | MTR_1g022305 | 58.772 | 114 | 46 | 1 | 37 | 150 | 221 | 333 | 8.82e-37 | 133 |
MS.gene057906.t1 | MTR_4g098870 | 85.000 | 60 | 9 | 0 | 140 | 199 | 302 | 361 | 1.76e-27 | 108 |
MS.gene057906.t1 | MTR_4g098870 | 85.000 | 60 | 9 | 0 | 140 | 199 | 322 | 381 | 2.01e-27 | 108 |
MS.gene057906.t1 | MTR_4g098870 | 85.000 | 60 | 9 | 0 | 140 | 199 | 341 | 400 | 2.07e-27 | 108 |
MS.gene057906.t1 | MTR_4g098870 | 85.000 | 60 | 9 | 0 | 140 | 199 | 302 | 361 | 2.07e-27 | 108 |
MS.gene057906.t1 | MTR_4g098870 | 85.000 | 60 | 9 | 0 | 140 | 199 | 322 | 381 | 2.10e-27 | 108 |
MS.gene057906.t1 | MTR_5g014040 | 72.581 | 62 | 17 | 0 | 138 | 199 | 301 | 362 | 9.34e-23 | 95.5 |
MS.gene057906.t1 | MTR_5g014040 | 69.697 | 66 | 20 | 0 | 138 | 203 | 261 | 326 | 1.65e-22 | 94.7 |
MS.gene057906.t1 | MTR_5g014040 | 74.194 | 62 | 16 | 0 | 138 | 199 | 301 | 362 | 1.68e-22 | 94.7 |
MS.gene057906.t1 | MTR_2g066050 | 34.667 | 150 | 95 | 2 | 3 | 149 | 295 | 444 | 7.87e-21 | 89.7 |
MS.gene057906.t1 | MTR_4g078810 | 66.000 | 50 | 17 | 0 | 150 | 199 | 160 | 209 | 3.43e-18 | 82.0 |
MS.gene057906.t1 | MTR_2g090675 | 66.000 | 50 | 17 | 0 | 150 | 199 | 163 | 212 | 9.26e-18 | 80.9 |
MS.gene057906.t1 | MTR_2g450070 | 64.000 | 50 | 18 | 0 | 150 | 199 | 215 | 264 | 1.43e-15 | 74.7 |
MS.gene057906.t1 | MTR_2g450070 | 64.000 | 50 | 18 | 0 | 150 | 199 | 215 | 264 | 1.52e-15 | 74.7 |
MS.gene057906.t1 | MTR_3g106220 | 64.000 | 50 | 18 | 0 | 150 | 199 | 200 | 249 | 4.32e-15 | 73.6 |
MS.gene057906.t1 | MTR_1g032570 | 65.306 | 49 | 17 | 0 | 151 | 199 | 134 | 182 | 6.79e-15 | 72.8 |
MS.gene057906.t1 | MTR_7g076820 | 28.462 | 130 | 90 | 2 | 4 | 131 | 387 | 515 | 6.84e-15 | 72.8 |
MS.gene057906.t1 | MTR_1g032570 | 65.306 | 49 | 17 | 0 | 151 | 199 | 203 | 251 | 6.96e-15 | 72.8 |
MS.gene057906.t1 | MTR_4g121020 | 65.306 | 49 | 17 | 0 | 151 | 199 | 218 | 266 | 8.94e-15 | 72.4 |
MS.gene057906.t1 | MTR_4g121020 | 65.306 | 49 | 17 | 0 | 151 | 199 | 114 | 162 | 9.14e-15 | 72.4 |
MS.gene057906.t1 | MTR_4g121020 | 65.306 | 49 | 17 | 0 | 151 | 199 | 218 | 266 | 9.20e-15 | 72.4 |
MS.gene057906.t1 | MTR_7g076830 | 27.692 | 130 | 91 | 2 | 4 | 131 | 380 | 508 | 1.02e-14 | 72.4 |
MS.gene057906.t1 | MTR_7g076800 | 27.692 | 130 | 91 | 2 | 4 | 131 | 378 | 506 | 1.13e-14 | 72.0 |
MS.gene057906.t1 | MTR_4g131570 | 68.085 | 47 | 15 | 0 | 153 | 199 | 208 | 254 | 1.40e-14 | 72.0 |
MS.gene057906.t1 | MTR_3g102590 | 56.897 | 58 | 24 | 1 | 142 | 199 | 138 | 194 | 3.71e-14 | 68.9 |
MS.gene057906.t1 | MTR_7g089010 | 63.830 | 47 | 17 | 0 | 153 | 199 | 96 | 142 | 4.74e-14 | 69.7 |
MS.gene057906.t1 | MTR_3g102600 | 57.447 | 47 | 20 | 0 | 153 | 199 | 88 | 134 | 5.04e-14 | 66.6 |
MS.gene057906.t1 | MTR_4g064730 | 63.830 | 47 | 17 | 0 | 153 | 199 | 136 | 182 | 5.87e-14 | 69.3 |
MS.gene057906.t1 | MTR_3g102600 | 57.447 | 47 | 20 | 0 | 153 | 199 | 137 | 183 | 9.14e-14 | 67.0 |
MS.gene057906.t1 | MTR_3g102590 | 58.929 | 56 | 22 | 1 | 142 | 197 | 138 | 192 | 1.00e-13 | 67.0 |
MS.gene057906.t1 | MTR_4g131600 | 63.830 | 47 | 17 | 0 | 153 | 199 | 206 | 252 | 1.19e-13 | 69.3 |
MS.gene057906.t1 | MTR_3g102600 | 43.210 | 81 | 44 | 2 | 119 | 199 | 56 | 134 | 1.56e-13 | 66.2 |
MS.gene057906.t1 | MTR_2g055850 | 26.577 | 222 | 124 | 6 | 5 | 190 | 339 | 557 | 1.63e-13 | 68.9 |
MS.gene057906.t1 | MTR_1g013170 | 61.702 | 47 | 18 | 0 | 153 | 199 | 196 | 242 | 2.23e-13 | 68.2 |
MS.gene057906.t1 | MTR_4g131580 | 65.957 | 47 | 16 | 0 | 153 | 199 | 205 | 251 | 2.51e-13 | 68.2 |
MS.gene057906.t1 | MTR_8g079940 | 44.578 | 83 | 42 | 1 | 117 | 199 | 182 | 260 | 2.62e-13 | 68.2 |
MS.gene057906.t1 | MTR_3g102600 | 43.210 | 81 | 44 | 2 | 119 | 199 | 105 | 183 | 2.63e-13 | 66.6 |
MS.gene057906.t1 | MTR_5g027840 | 30.968 | 155 | 80 | 5 | 4 | 134 | 353 | 504 | 4.67e-13 | 67.4 |
MS.gene057906.t1 | MTR_7g117705 | 58.000 | 50 | 21 | 0 | 150 | 199 | 193 | 242 | 1.04e-12 | 66.2 |
MS.gene057906.t1 | MTR_1g013180 | 58.000 | 50 | 21 | 0 | 150 | 199 | 344 | 393 | 1.11e-12 | 66.6 |
MS.gene057906.t1 | MTR_3g071620 | 31.034 | 116 | 74 | 2 | 7 | 116 | 280 | 395 | 1.66e-12 | 65.9 |
MS.gene057906.t1 | MTR_2g034960 | 54.000 | 50 | 23 | 0 | 150 | 199 | 213 | 262 | 1.97e-12 | 65.9 |
MS.gene057906.t1 | MTR_2g039960 | 33.333 | 84 | 54 | 1 | 37 | 118 | 313 | 396 | 2.48e-12 | 65.1 |
MS.gene057906.t1 | MTR_7g026400 | 52.941 | 51 | 24 | 0 | 149 | 199 | 158 | 208 | 4.16e-12 | 64.7 |
MS.gene057906.t1 | MTR_1g080330 | 41.379 | 87 | 49 | 2 | 115 | 199 | 141 | 227 | 4.25e-12 | 63.9 |
MS.gene057906.t1 | MTR_3g049990 | 28.455 | 123 | 86 | 1 | 4 | 124 | 397 | 519 | 5.84e-12 | 64.3 |
MS.gene057906.t1 | MTR_4g021760 | 41.935 | 62 | 36 | 0 | 138 | 199 | 159 | 220 | 6.53e-12 | 63.5 |
MS.gene057906.t1 | MTR_1g080330 | 41.379 | 87 | 49 | 2 | 115 | 199 | 141 | 227 | 7.18e-12 | 63.9 |
MS.gene057906.t1 | MTR_1g012420 | 33.333 | 102 | 66 | 1 | 7 | 106 | 292 | 393 | 1.22e-11 | 63.2 |
MS.gene057906.t1 | MTR_3g086100 | 59.184 | 49 | 20 | 0 | 151 | 199 | 202 | 250 | 1.29e-11 | 63.2 |
MS.gene057906.t1 | MTR_3g086100 | 59.184 | 49 | 20 | 0 | 151 | 199 | 131 | 179 | 1.42e-11 | 63.2 |
MS.gene057906.t1 | MTR_4g112320 | 26.866 | 134 | 92 | 2 | 3 | 133 | 162 | 292 | 4.14e-11 | 61.6 |
MS.gene057906.t1 | MTR_2g007000 | 27.103 | 107 | 74 | 2 | 8 | 112 | 757 | 861 | 5.91e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057906.t1 | AT5G60990 | 53.333 | 150 | 68 | 1 | 1 | 148 | 258 | 407 | 3.60e-46 | 158 |
MS.gene057906.t1 | AT1G16280 | 39.844 | 128 | 74 | 2 | 3 | 127 | 301 | 428 | 1.02e-23 | 98.2 |
MS.gene057906.t1 | AT4G18020 | 80.392 | 51 | 10 | 0 | 149 | 199 | 297 | 347 | 9.81e-21 | 89.7 |
MS.gene057906.t1 | AT4G18020 | 80.392 | 51 | 10 | 0 | 149 | 199 | 297 | 347 | 9.81e-21 | 89.7 |
MS.gene057906.t1 | AT4G18020 | 80.392 | 51 | 10 | 0 | 149 | 199 | 297 | 347 | 9.81e-21 | 89.7 |
MS.gene057906.t1 | AT4G18020 | 80.392 | 51 | 10 | 0 | 149 | 199 | 297 | 347 | 9.81e-21 | 89.7 |
MS.gene057906.t1 | AT4G18020 | 80.392 | 51 | 10 | 0 | 149 | 199 | 297 | 347 | 9.81e-21 | 89.7 |
MS.gene057906.t1 | AT4G18020 | 80.392 | 51 | 10 | 0 | 149 | 199 | 297 | 347 | 9.81e-21 | 89.7 |
MS.gene057906.t1 | AT4G18020 | 80.392 | 51 | 10 | 0 | 149 | 199 | 297 | 347 | 1.09e-20 | 89.7 |
MS.gene057906.t1 | AT4G18020 | 80.392 | 51 | 10 | 0 | 149 | 199 | 297 | 347 | 1.09e-20 | 89.7 |
MS.gene057906.t1 | AT4G18020 | 80.392 | 51 | 10 | 0 | 149 | 199 | 297 | 347 | 1.09e-20 | 89.7 |
MS.gene057906.t1 | AT4G18020 | 80.392 | 51 | 10 | 0 | 149 | 199 | 297 | 347 | 1.09e-20 | 89.7 |
MS.gene057906.t1 | AT4G18020 | 80.392 | 51 | 10 | 0 | 149 | 199 | 297 | 347 | 1.09e-20 | 89.7 |
MS.gene057906.t1 | AT5G44190 | 72.000 | 50 | 14 | 0 | 150 | 199 | 149 | 198 | 7.49e-19 | 84.0 |
MS.gene057906.t1 | AT5G44190 | 72.000 | 50 | 14 | 0 | 150 | 199 | 149 | 198 | 8.09e-19 | 83.6 |
MS.gene057906.t1 | AT2G20570 | 72.000 | 50 | 14 | 0 | 150 | 199 | 155 | 204 | 4.18e-18 | 82.0 |
MS.gene057906.t1 | AT2G20570 | 72.000 | 50 | 14 | 0 | 150 | 199 | 171 | 220 | 4.54e-18 | 82.0 |
MS.gene057906.t1 | AT5G58080 | 62.963 | 54 | 20 | 0 | 146 | 199 | 192 | 245 | 1.60e-16 | 77.8 |
MS.gene057906.t1 | AT2G25180 | 63.333 | 60 | 18 | 1 | 140 | 199 | 191 | 246 | 1.28e-15 | 75.1 |
MS.gene057906.t1 | AT1G31970 | 36.264 | 91 | 56 | 1 | 19 | 107 | 382 | 472 | 8.42e-15 | 72.4 |
MS.gene057906.t1 | AT2G40970 | 65.957 | 47 | 16 | 0 | 153 | 199 | 110 | 156 | 1.03e-14 | 70.9 |
MS.gene057906.t1 | AT5G59570 | 63.830 | 47 | 17 | 0 | 153 | 199 | 146 | 192 | 1.44e-14 | 70.9 |
MS.gene057906.t1 | AT5G59570 | 63.830 | 47 | 17 | 0 | 153 | 199 | 146 | 192 | 1.44e-14 | 70.9 |
MS.gene057906.t1 | AT2G01760 | 65.306 | 49 | 17 | 0 | 151 | 199 | 138 | 186 | 1.48e-14 | 71.2 |
MS.gene057906.t1 | AT5G05090 | 63.830 | 47 | 17 | 0 | 153 | 199 | 86 | 132 | 1.63e-14 | 70.5 |
MS.gene057906.t1 | AT2G01760 | 64.000 | 50 | 18 | 0 | 150 | 199 | 202 | 251 | 1.82e-14 | 71.2 |
MS.gene057906.t1 | AT2G01760 | 64.000 | 50 | 18 | 0 | 150 | 199 | 230 | 279 | 1.99e-14 | 71.2 |
MS.gene057906.t1 | AT3G10760 | 63.830 | 47 | 17 | 0 | 153 | 199 | 110 | 156 | 2.04e-14 | 70.9 |
MS.gene057906.t1 | AT4G00660 | 26.772 | 127 | 91 | 1 | 4 | 128 | 369 | 495 | 2.32e-14 | 71.2 |
MS.gene057906.t1 | AT4G00660 | 26.772 | 127 | 91 | 1 | 4 | 128 | 369 | 495 | 2.32e-14 | 71.2 |
MS.gene057906.t1 | AT3G61240 | 25.564 | 133 | 97 | 1 | 4 | 134 | 362 | 494 | 2.49e-14 | 71.2 |
MS.gene057906.t1 | AT3G61240 | 25.564 | 133 | 97 | 1 | 4 | 134 | 362 | 494 | 2.49e-14 | 71.2 |
MS.gene057906.t1 | AT3G46640 | 53.968 | 63 | 25 | 1 | 137 | 199 | 137 | 195 | 2.50e-14 | 70.5 |
MS.gene057906.t1 | AT3G46640 | 53.968 | 63 | 25 | 1 | 137 | 199 | 137 | 195 | 2.50e-14 | 70.5 |
MS.gene057906.t1 | AT3G46640 | 53.968 | 63 | 25 | 1 | 137 | 199 | 137 | 195 | 3.15e-14 | 70.5 |
MS.gene057906.t1 | AT3G16857 | 61.224 | 49 | 19 | 0 | 151 | 199 | 170 | 218 | 5.26e-14 | 70.5 |
MS.gene057906.t1 | AT2G45810 | 26.562 | 128 | 92 | 1 | 4 | 129 | 392 | 519 | 5.41e-14 | 70.1 |
MS.gene057906.t1 | AT3G22330 | 28.682 | 129 | 89 | 2 | 3 | 129 | 349 | 476 | 8.30e-14 | 69.7 |
MS.gene057906.t1 | AT4G31920 | 63.265 | 49 | 18 | 0 | 151 | 199 | 186 | 234 | 8.92e-14 | 69.7 |
MS.gene057906.t1 | AT5G65900 | 29.630 | 135 | 89 | 2 | 7 | 138 | 404 | 535 | 1.36e-13 | 69.3 |
MS.gene057906.t1 | AT3G16857 | 61.224 | 49 | 19 | 0 | 151 | 199 | 240 | 288 | 1.97e-13 | 68.6 |
MS.gene057906.t1 | AT3G16857 | 61.224 | 49 | 19 | 0 | 151 | 199 | 240 | 288 | 2.07e-13 | 68.6 |
MS.gene057906.t1 | AT3G22310 | 29.457 | 129 | 88 | 2 | 3 | 129 | 361 | 488 | 3.48e-13 | 67.8 |
MS.gene057906.t1 | AT3G22310 | 29.457 | 129 | 88 | 2 | 3 | 129 | 361 | 488 | 3.51e-13 | 67.8 |
MS.gene057906.t1 | AT5G26742 | 29.752 | 121 | 82 | 2 | 3 | 121 | 351 | 470 | 5.04e-13 | 67.4 |
MS.gene057906.t1 | AT5G26742 | 29.752 | 121 | 82 | 2 | 3 | 121 | 351 | 470 | 5.04e-13 | 67.4 |
MS.gene057906.t1 | AT4G15850 | 27.612 | 134 | 91 | 3 | 3 | 130 | 335 | 468 | 6.32e-13 | 67.0 |
MS.gene057906.t1 | AT4G16630 | 30.081 | 123 | 84 | 1 | 4 | 124 | 413 | 535 | 6.58e-13 | 67.0 |
MS.gene057906.t1 | AT5G26742 | 29.752 | 121 | 82 | 2 | 3 | 121 | 258 | 377 | 7.35e-13 | 67.0 |
MS.gene057906.t1 | AT1G51380 | 34.737 | 95 | 60 | 1 | 39 | 131 | 297 | 391 | 5.13e-12 | 64.3 |
MS.gene057906.t1 | AT5G49240 | 49.153 | 59 | 28 | 1 | 139 | 197 | 216 | 272 | 9.84e-12 | 63.2 |
MS.gene057906.t1 | AT1G67710 | 64.000 | 50 | 17 | 1 | 151 | 199 | 122 | 171 | 2.52e-11 | 62.4 |
MS.gene057906.t1 | AT1G67710 | 64.000 | 50 | 17 | 1 | 151 | 199 | 196 | 245 | 2.88e-11 | 62.4 |
MS.gene057906.t1 | AT1G67710 | 64.000 | 50 | 17 | 1 | 151 | 199 | 131 | 180 | 3.07e-11 | 62.0 |
MS.gene057906.t1 | AT3G09620 | 27.679 | 112 | 77 | 2 | 45 | 154 | 657 | 766 | 7.08e-11 | 61.2 |
MS.gene057906.t1 | AT3G09620 | 27.679 | 112 | 77 | 2 | 45 | 154 | 656 | 765 | 7.35e-11 | 61.2 |
MS.gene057906.t1 | AT1G20920 | 25.210 | 119 | 85 | 2 | 38 | 154 | 473 | 589 | 7.85e-11 | 61.2 |
MS.gene057906.t1 | AT1G20920 | 25.210 | 119 | 85 | 2 | 38 | 154 | 811 | 927 | 7.88e-11 | 61.2 |
MS.gene057906.t1 | AT1G20920 | 25.210 | 119 | 85 | 2 | 38 | 154 | 811 | 927 | 7.88e-11 | 61.2 |
MS.gene057906.t1 | AT1G20920 | 25.210 | 119 | 85 | 2 | 38 | 154 | 811 | 927 | 7.88e-11 | 61.2 |
MS.gene057906.t1 | AT1G20920 | 25.210 | 119 | 85 | 2 | 38 | 154 | 811 | 927 | 7.88e-11 | 61.2 |
MS.gene057906.t1 | AT1G20920 | 25.210 | 119 | 85 | 2 | 38 | 154 | 811 | 927 | 7.88e-11 | 61.2 |
MS.gene057906.t1 | AT1G20920 | 25.210 | 119 | 85 | 2 | 38 | 154 | 811 | 927 | 7.88e-11 | 61.2 |
Find 51 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGCTATTCCTTCTCGAATAT+TGG | 0.160903 | 3.3:+15399715 | MS.gene057906:CDS |
TTCTTAAGAATCTTGGTTTC+AGG | 0.181986 | 3.3:+15397058 | MS.gene057906:CDS |
GGGTTGAAAATGAAGGAATT+TGG | 0.231705 | 3.3:+15400094 | MS.gene057906:intron |
TGACTCATATAACTAATAAT+AGG | 0.255686 | 3.3:-15397087 | None:intergenic |
GGTTGAAAATGAAGGAATTT+GGG | 0.285926 | 3.3:+15400095 | MS.gene057906:intron |
TCCTTGAATGCGTTCAAGTC+TGG | 0.307276 | 3.3:+15397220 | MS.gene057906:CDS |
GCTTTGATTCTTAAGAATCT+TGG | 0.333972 | 3.3:+15397051 | MS.gene057906:CDS |
TTGAAATGTCTCCTTTCATC+TGG | 0.335756 | 3.3:-15397480 | None:intergenic |
ATGTGGTACAACGCTTCTTT+TGG | 0.360475 | 3.3:+15397029 | MS.gene057906:CDS |
TAATGTGGCAAGCCATCTTC+AGG | 0.386166 | 3.3:+15399769 | MS.gene057906:CDS |
TTGTAGTGACTTTGTTAGTA+AGG | 0.398889 | 3.3:+15397261 | MS.gene057906:CDS |
CCCAGACTTGAACGCATTCA+AGG | 0.403087 | 3.3:-15397221 | None:intergenic |
TTTGGAAGGGTGTGCTATTG+AGG | 0.416430 | 3.3:+15397661 | MS.gene057906:CDS |
GACTCATATAACTAATAATA+GGG | 0.421629 | 3.3:-15397086 | None:intergenic |
ATCTGGGCTCACAAAGGAAA+TGG | 0.429905 | 3.3:-15397463 | None:intergenic |
TCTTAAGAATCTTGGTTTCA+GGG | 0.434508 | 3.3:+15397059 | MS.gene057906:CDS |
TATTATTAGTTATATGAGTC+AGG | 0.445349 | 3.3:+15397089 | MS.gene057906:CDS |
CCTTGAATGCGTTCAAGTCT+GGG | 0.463606 | 3.3:+15397221 | MS.gene057906:CDS |
AATATGATAGAGAAACATAT+AGG | 0.463712 | 3.3:+15397501 | MS.gene057906:CDS |
TGATTAACTACAACATTCCT+TGG | 0.469598 | 3.3:+15397311 | MS.gene057906:CDS |
ATTGTATCCTGCACCATTTG+AGG | 0.486127 | 3.3:+15397628 | MS.gene057906:CDS |
CCTTTGTGAGCCCAGATGAA+AGG | 0.506008 | 3.3:+15397469 | MS.gene057906:CDS |
TACACTCTCACTAAAATGAC+TGG | 0.518270 | 3.3:+15396979 | None:intergenic |
AATATTGGATCTAATGAAAG+TGG | 0.519493 | 3.3:+15399730 | MS.gene057906:CDS |
TGTAGTGACTTTGTTAGTAA+GGG | 0.522265 | 3.3:+15397262 | MS.gene057906:CDS |
AAAACTTCCTCAAATGGTGC+AGG | 0.532778 | 3.3:-15397635 | None:intergenic |
AAGGAATTTGGGGATGAAGA+AGG | 0.535778 | 3.3:+15400106 | MS.gene057906:intron |
TACTTTGGTCTTAGGTACAC+TGG | 0.541322 | 3.3:+15399636 | MS.gene057906:intron |
ATTAGATCCAATATTCGAGA+AGG | 0.541398 | 3.3:-15399722 | None:intergenic |
AATGACTGGAAGTAGATCAA+TGG | 0.547096 | 3.3:+15396993 | None:intergenic |
TGAAATGTCTCCTTTCATCT+GGG | 0.550468 | 3.3:-15397479 | None:intergenic |
ATTACATCTACCGCGTGGGA+TGG | 0.562797 | 3.3:+15397418 | MS.gene057906:CDS |
GGTAGATTATAACCTGAAGA+TGG | 0.564115 | 3.3:-15399781 | None:intergenic |
TTAATCATCATATCTACCGC+TGG | 0.572363 | 3.3:-15397295 | None:intergenic |
GTGAAGGCAGTGGAGCAACT+AGG | 0.575398 | 3.3:+15399683 | MS.gene057906:CDS |
TCAAATGGTGCAGGATACAA+TGG | 0.597106 | 3.3:-15397626 | None:intergenic |
CATATAACTAATAATAGGGA+TGG | 0.602559 | 3.3:-15397082 | None:intergenic |
ATTGGATCTAATGAAAGTGG+AGG | 0.613074 | 3.3:+15399733 | MS.gene057906:CDS |
CATCTTACGTTTGGATACCA+AGG | 0.615406 | 3.3:-15397328 | None:intergenic |
GGCTGAAAGATTATCACAAG+AGG | 0.628418 | 3.3:+15397682 | MS.gene057906:CDS |
GGGCTTGACAAGGCATAATG+TGG | 0.631155 | 3.3:+15399754 | MS.gene057906:CDS |
GTTGAAAATGAAGGAATTTG+GGG | 0.631709 | 3.3:+15400096 | MS.gene057906:intron |
TTGGATCTAATGAAAGTGGA+GGG | 0.637148 | 3.3:+15399734 | MS.gene057906:CDS |
CCTTTCATCTGGGCTCACAA+AGG | 0.638109 | 3.3:-15397469 | None:intergenic |
CTTGAATGCGTTCAAGTCTG+GGG | 0.643789 | 3.3:+15397222 | MS.gene057906:CDS |
TGAAAGTGGAGGGCTTGACA+AGG | 0.644049 | 3.3:+15399744 | MS.gene057906:CDS |
CAGGATTACATCTACCGCGT+GGG | 0.645040 | 3.3:+15397414 | MS.gene057906:intron |
ACAGGATTACATCTACCGCG+TGG | 0.703821 | 3.3:+15397413 | MS.gene057906:intron |
ATGGTATACACTCAGCAATG+TGG | 0.716399 | 3.3:+15397012 | MS.gene057906:CDS |
TAAGGGACTAGATATTCCAG+CGG | 0.751272 | 3.3:+15397279 | MS.gene057906:CDS |
GAGCAACAGTCCATCCCACG+CGG | 0.775337 | 3.3:-15397428 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATAATTAATGTAGTTTAAA+AGG | - | chr3.3:15399005-15399024 | None:intergenic | 10.0% |
!! | TATGTATAAATGAATTATTA+AGG | - | chr3.3:15398638-15398657 | None:intergenic | 10.0% |
!!! | AATAAAAAAGTTTTACATAA+AGG | + | chr3.3:15398786-15398805 | MS.gene057906:intron | 10.0% |
!!! | ATAAAAAAGTTTTACATAAA+GGG | + | chr3.3:15398787-15398806 | MS.gene057906:intron | 10.0% |
!!! | TATAAAATACTAATTTCTTT+TGG | - | chr3.3:15397979-15397998 | None:intergenic | 10.0% |
!!! | TTAACATAATAACTTTTTAT+AGG | + | chr3.3:15397183-15397202 | MS.gene057906:intron | 10.0% |
!! | AAGTTATTATGTTAAGAATT+AGG | - | chr3.3:15397178-15397197 | None:intergenic | 15.0% |
!! | AATAAAATTCTAATTGTCAA+TGG | - | chr3.3:15398085-15398104 | None:intergenic | 15.0% |
!! | AGAAATTACAATTATAATAC+AGG | - | chr3.3:15397131-15397150 | None:intergenic | 15.0% |
!! | ATAAAATTCTAATTGTCAAT+GGG | - | chr3.3:15398084-15398103 | None:intergenic | 15.0% |
!! | GTAAGAAATAAATACTATTA+TGG | - | chr3.3:15398665-15398684 | None:intergenic | 15.0% |
!! | TATAAATGAATTATTAAGGA+CGG | - | chr3.3:15398634-15398653 | None:intergenic | 15.0% |
!!! | ATTTTTACATTTGTTTCATA+TGG | + | chr3.3:15398290-15398309 | MS.gene057906:intron | 15.0% |
!!! | TGATATTCATATATTTTCAT+AGG | + | chr3.3:15399864-15399883 | MS.gene057906:intron | 15.0% |
!!! | TTTTTCAAGATCTTTTATTT+AGG | + | chr3.3:15398820-15398839 | MS.gene057906:intron | 15.0% |
!! | AAAACTGTATTAAGAAAATC+AGG | - | chr3.3:15399614-15399633 | None:intergenic | 20.0% |
!! | AATATGATAGAGAAACATAT+AGG | + | chr3.3:15397501-15397520 | MS.gene057906:CDS | 20.0% |
!! | GACTCATATAACTAATAATA+GGG | - | chr3.3:15397089-15397108 | None:intergenic | 20.0% |
!! | GTTGAATTATTATAGTGTTA+TGG | + | chr3.3:15398500-15398519 | MS.gene057906:intron | 20.0% |
!! | TAAATATGCTTGACATATAT+AGG | + | chr3.3:15400002-15400021 | MS.gene057906:intron | 20.0% |
!! | TATTATTAGTTATATGAGTC+AGG | + | chr3.3:15397089-15397108 | MS.gene057906:CDS | 20.0% |
!! | TCCTTTCTATATCTAATTAT+CGG | - | chr3.3:15397854-15397873 | None:intergenic | 20.0% |
!! | TGACTCATATAACTAATAAT+AGG | - | chr3.3:15397090-15397109 | None:intergenic | 20.0% |
!! | TTGTTTATCAATGTTGTATA+AGG | + | chr3.3:15399554-15399573 | MS.gene057906:intron | 20.0% |
!!! | AAATAGAGAAGTTAAGTTTT+TGG | + | chr3.3:15397769-15397788 | MS.gene057906:intron | 20.0% |
!!! | AACTACTCTAATGTTTATTT+TGG | + | chr3.3:15399275-15399294 | MS.gene057906:intron | 20.0% |
!!! | ACTACTCTAATGTTTATTTT+GGG | + | chr3.3:15399276-15399295 | MS.gene057906:intron | 20.0% |
!!! | ATCTTTTATTTAGGAATTGA+TGG | + | chr3.3:15398829-15398848 | MS.gene057906:intron | 20.0% |
!!! | ATTAATTACAGTTTTGAATG+AGG | - | chr3.3:15399837-15399856 | None:intergenic | 20.0% |
!!! | ATTATATCTAGTGTCAATTT+TGG | - | chr3.3:15398725-15398744 | None:intergenic | 20.0% |
!!! | TGATATGACAGTTTTTTTTA+GGG | + | chr3.3:15398053-15398072 | MS.gene057906:intron | 20.0% |
!!! | TGATTTTCTTAATACAGTTT+TGG | + | chr3.3:15399613-15399632 | MS.gene057906:intron | 20.0% |
! | AAAAAAGTAGTAACTGTTAG+AGG | - | chr3.3:15399312-15399331 | None:intergenic | 25.0% |
! | AAAAGAAAAACTTCCTCAAA+TGG | - | chr3.3:15397644-15397663 | None:intergenic | 25.0% |
! | AACATTATGAGAAGAATGAA+TGG | - | chr3.3:15399508-15399527 | None:intergenic | 25.0% |
! | AATATTGGATCTAATGAAAG+TGG | + | chr3.3:15399730-15399749 | MS.gene057906:CDS | 25.0% |
! | AATGTGAGATAAAAGCTAAT+TGG | + | chr3.3:15399457-15399476 | MS.gene057906:intron | 25.0% |
! | AATTCACCTATGAATATGAA+GGG | + | chr3.3:15398129-15398148 | MS.gene057906:intron | 25.0% |
! | ATATAAATGTTGGAGTTTGT+GGG | + | chr3.3:15400074-15400093 | MS.gene057906:intron | 25.0% |
! | CATATAACTAATAATAGGGA+TGG | - | chr3.3:15397085-15397104 | None:intergenic | 25.0% |
! | GGGAATTTGTATATAAATGT+TGG | + | chr3.3:15400064-15400083 | MS.gene057906:intron | 25.0% |
! | TACATTTGTTTCATATGGAT+TGG | + | chr3.3:15398295-15398314 | MS.gene057906:intron | 25.0% |
! | TATATAAATGTTGGAGTTTG+TGG | + | chr3.3:15400073-15400092 | MS.gene057906:intron | 25.0% |
! | TCATTAAAATGGCAAAGTAA+AGG | - | chr3.3:15397536-15397555 | None:intergenic | 25.0% |
! | TCCGATAATTAGATATAGAA+AGG | + | chr3.3:15397850-15397869 | MS.gene057906:intron | 25.0% |
! | TCTATTTAAAAGAAGTAGAC+AGG | - | chr3.3:15397756-15397775 | None:intergenic | 25.0% |
! | TCTTATGCATTCTATATTTC+TGG | - | chr3.3:15399931-15399950 | None:intergenic | 25.0% |
! | TTATACCAATGAAGACAAAT+TGG | - | chr3.3:15397822-15397841 | None:intergenic | 25.0% |
! | TTGGAAACACCATTATATTA+TGG | - | chr3.3:15398972-15398991 | None:intergenic | 25.0% |
!! | AAAGCGTCATAGTAAATAAT+TGG | + | chr3.3:15397559-15397578 | MS.gene057906:intron | 25.0% |
!! | ATTTGAGGAAGTTTTTCTTT+TGG | + | chr3.3:15397643-15397662 | MS.gene057906:CDS | 25.0% |
!! | TGACTTATTAAATTTTCAGC+AGG | - | chr3.3:15398214-15398233 | None:intergenic | 25.0% |
!! | TTTAAAAGGTAGTCTTCTTT+TGG | - | chr3.3:15398991-15399010 | None:intergenic | 25.0% |
!! | TTTTTATAGGCAAAGAAACT+TGG | + | chr3.3:15397196-15397215 | MS.gene057906:intron | 25.0% |
!! | TTTTTCTAGATCTTGAAGTT+TGG | - | chr3.3:15398333-15398352 | None:intergenic | 25.0% |
!!! | ACTACTTTTTTTTCTTCTTC+TGG | + | chr3.3:15399321-15399340 | MS.gene057906:intron | 25.0% |
!!! | AGTTAAGTTTTTGGATTTTG+TGG | + | chr3.3:15397778-15397797 | MS.gene057906:intron | 25.0% |
!!! | GTGATATGACAGTTTTTTTT+AGG | + | chr3.3:15398052-15398071 | MS.gene057906:intron | 25.0% |
!!! | GTGTTACTTTTTTGTTCAAT+TGG | + | chr3.3:15398478-15398497 | MS.gene057906:intron | 25.0% |
!!! | TGAGGTATTGAAATAGTTTT+TGG | - | chr3.3:15399819-15399838 | None:intergenic | 25.0% |
!!! | TTAATACAGTTTTGGTACTT+TGG | + | chr3.3:15399621-15399640 | MS.gene057906:intron | 25.0% |
ACAACATCTGCAAATAAAGT+AGG | + | chr3.3:15399420-15399439 | MS.gene057906:intron | 30.0% | |
AGAACCTGAGAGATATTATT+AGG | + | chr3.3:15398753-15398772 | MS.gene057906:intron | 30.0% | |
ATCATGCACATATATGAGTA+AGG | + | chr3.3:15398570-15398589 | MS.gene057906:intron | 30.0% | |
ATCTCTTGAACCTTGTAAAT+GGG | + | chr3.3:15400039-15400058 | MS.gene057906:intron | 30.0% | |
ATGCACAGATATATAGACAT+TGG | + | chr3.3:15398359-15398378 | MS.gene057906:intron | 30.0% | |
ATGGATATTGAAAATGTGTG+AGG | - | chr3.3:15398415-15398434 | None:intergenic | 30.0% | |
ATTAGATCCAATATTCGAGA+AGG | - | chr3.3:15399725-15399744 | None:intergenic | 30.0% | |
ATTGAGCATAGTTATGCTTT+AGG | + | chr3.3:15397716-15397735 | MS.gene057906:intron | 30.0% | |
CAATGAACAGTGTGAAATAA+CGG | - | chr3.3:15399537-15399556 | None:intergenic | 30.0% | |
CAATTCACCTATGAATATGA+AGG | + | chr3.3:15398128-15398147 | MS.gene057906:intron | 30.0% | |
GAACCTGAGAGATATTATTA+GGG | + | chr3.3:15398754-15398773 | MS.gene057906:intron | 30.0% | |
GAATATGGAGTTTGTATCTT+AGG | + | chr3.3:15398597-15398616 | MS.gene057906:intron | 30.0% | |
GAATTAGGCATATTTCTTGT+TGG | - | chr3.3:15397163-15397182 | None:intergenic | 30.0% | |
GATAGAGAAACATATAGGTT+AGG | + | chr3.3:15397506-15397525 | MS.gene057906:intron | 30.0% | |
GCAAGGCATATAATTGAAAA+AGG | - | chr3.3:15398873-15398892 | None:intergenic | 30.0% | |
GCTTTGATTCTTAAGAATCT+TGG | + | chr3.3:15397051-15397070 | MS.gene057906:CDS | 30.0% | |
GGTTGAAAATGAAGGAATTT+GGG | + | chr3.3:15400095-15400114 | MS.gene057906:intron | 30.0% | |
GTTGAAAATGAAGGAATTTG+GGG | + | chr3.3:15400096-15400115 | MS.gene057906:intron | 30.0% | |
TATATAGCACATCTTACGTT+TGG | - | chr3.3:15397340-15397359 | None:intergenic | 30.0% | |
TATCCCTAATAATATCTCTC+AGG | - | chr3.3:15398760-15398779 | None:intergenic | 30.0% | |
TATCTCTTGAACCTTGTAAA+TGG | + | chr3.3:15400038-15400057 | MS.gene057906:intron | 30.0% | |
TCATATTCATAGGTGAATTG+TGG | - | chr3.3:15398128-15398147 | None:intergenic | 30.0% | |
TCATGCACATATATGAGTAA+GGG | + | chr3.3:15398571-15398590 | MS.gene057906:intron | 30.0% | |
TCTTAAGAATCTTGGTTTCA+GGG | + | chr3.3:15397059-15397078 | MS.gene057906:CDS | 30.0% | |
TGATTAACTACAACATTCCT+TGG | + | chr3.3:15397311-15397330 | MS.gene057906:CDS | 30.0% | |
TGTAGTGACTTTGTTAGTAA+GGG | + | chr3.3:15397262-15397281 | MS.gene057906:CDS | 30.0% | |
TTCTTAAGAATCTTGGTTTC+AGG | + | chr3.3:15397058-15397077 | MS.gene057906:CDS | 30.0% | |
TTGTAGTGACTTTGTTAGTA+AGG | + | chr3.3:15397261-15397280 | MS.gene057906:CDS | 30.0% | |
! | ATATCTAGTGTCAATTTTGG+TGG | - | chr3.3:15398722-15398741 | None:intergenic | 30.0% |
! | GACGCTTTTGTTCATTAAAA+TGG | - | chr3.3:15397547-15397566 | None:intergenic | 30.0% |
!! | AAATAGTTTTTGGAAACCGT+GGG | - | chr3.3:15399809-15399828 | None:intergenic | 30.0% |
!! | AGGAAGTTTTTCTTTTGGAA+GGG | + | chr3.3:15397648-15397667 | MS.gene057906:CDS | 30.0% |
!! | TATCTAGTGTCAATTTTGGT+GGG | - | chr3.3:15398721-15398740 | None:intergenic | 30.0% |
!! | TTGTTTCATATGGATTGGAT+TGG | + | chr3.3:15398300-15398319 | MS.gene057906:intron | 30.0% |
!!! | TTGTACTTTTTTTGCTGCTA+CGG | - | chr3.3:15399114-15399133 | None:intergenic | 30.0% |
AAATTCCCAACCCATTTACA+AGG | - | chr3.3:15400052-15400071 | None:intergenic | 35.0% | |
AATGTATGATAAGACTGCAC+GGG | + | chr3.3:15397873-15397892 | MS.gene057906:intron | 35.0% | |
ACAAGCATATCAAAGAGACA+AGG | - | chr3.3:15398455-15398474 | None:intergenic | 35.0% | |
AGAATTGCATTACCGTTGAA+GGG | - | chr3.3:15399219-15399238 | None:intergenic | 35.0% | |
ATCGGAAATGGCTAAATACA+AGG | + | chr3.3:15399975-15399994 | MS.gene057906:intron | 35.0% | |
ATGTAATCCTGTTGATCACA+CGG | - | chr3.3:15397405-15397424 | None:intergenic | 35.0% | |
ATTGAAAATGTGTGAGGTGT+GGG | - | chr3.3:15398409-15398428 | None:intergenic | 35.0% | |
ATTGGATCTAATGAAAGTGG+AGG | + | chr3.3:15399733-15399752 | MS.gene057906:CDS | 35.0% | |
CAAAAAATTTGTGAAGGCAG+TGG | + | chr3.3:15399673-15399692 | MS.gene057906:CDS | 35.0% | |
CTACAACCCTTCATATTCAT+AGG | - | chr3.3:15398138-15398157 | None:intergenic | 35.0% | |
GAATGTATGATAAGACTGCA+CGG | + | chr3.3:15397872-15397891 | MS.gene057906:intron | 35.0% | |
GCTGCACAAAAAATTTGTGA+AGG | + | chr3.3:15399667-15399686 | MS.gene057906:CDS | 35.0% | |
GGGTTGAAAATGAAGGAATT+TGG | + | chr3.3:15400094-15400113 | MS.gene057906:intron | 35.0% | |
GGTAGATTATAACCTGAAGA+TGG | - | chr3.3:15399784-15399803 | None:intergenic | 35.0% | |
GTTCTCTCGCCATAATATAA+TGG | + | chr3.3:15398960-15398979 | MS.gene057906:intron | 35.0% | |
TATTGAAAATGTGTGAGGTG+TGG | - | chr3.3:15398410-15398429 | None:intergenic | 35.0% | |
TGAAATGTCTCCTTTCATCT+GGG | - | chr3.3:15397482-15397501 | None:intergenic | 35.0% | |
TGGAAATCATTATAGCAGCA+TGG | + | chr3.3:15398520-15398539 | MS.gene057906:intron | 35.0% | |
TTAATCATCATATCTACCGC+TGG | - | chr3.3:15397298-15397317 | None:intergenic | 35.0% | |
TTGAAATGTCTCCTTTCATC+TGG | - | chr3.3:15397483-15397502 | None:intergenic | 35.0% | |
TTGGATCTAATGAAAGTGGA+GGG | + | chr3.3:15399734-15399753 | MS.gene057906:CDS | 35.0% | |
TTTAATAAGTCACAGCCTCT+CGG | + | chr3.3:15398222-15398241 | MS.gene057906:intron | 35.0% | |
TTTGGGGAAAAAAGAACAAG+AGG | + | chr3.3:15398926-15398945 | MS.gene057906:intron | 35.0% | |
! | AAAAAGTACAAGCTTGGAGT+TGG | + | chr3.3:15399123-15399142 | MS.gene057906:intron | 35.0% |
! | AAAAGTACAAGCTTGGAGTT+GGG | + | chr3.3:15399124-15399143 | MS.gene057906:intron | 35.0% |
! | AGTTTGTGGGTTGAAAATGA+AGG | + | chr3.3:15400087-15400106 | MS.gene057906:intron | 35.0% |
! | CAGCAAAAAAAGTACAAGCT+TGG | + | chr3.3:15399117-15399136 | MS.gene057906:intron | 35.0% |
! | GAGGAAGTTTTTCTTTTGGA+AGG | + | chr3.3:15397647-15397666 | MS.gene057906:CDS | 35.0% |
! | TCTTTGAGCAAATGATAGTG+TGG | - | chr3.3:15398166-15398185 | None:intergenic | 35.0% |
! | TTGAACCTTGTAAATGGGTT+GGG | + | chr3.3:15400044-15400063 | MS.gene057906:intron | 35.0% |
! | TTTGTGGCAAGTTGAAATTG+TGG | + | chr3.3:15397794-15397813 | MS.gene057906:intron | 35.0% |
!! | AGTTTTGGTACTTTGGTCTT+AGG | + | chr3.3:15399628-15399647 | MS.gene057906:intron | 35.0% |
!! | ATGTAGAGGTGATTTGTTTG+GGG | + | chr3.3:15398910-15398929 | MS.gene057906:intron | 35.0% |
!! | CATGTAGAGGTGATTTGTTT+GGG | + | chr3.3:15398909-15398928 | MS.gene057906:intron | 35.0% |
!! | GAAATAGTTTTTGGAAACCG+TGG | - | chr3.3:15399810-15399829 | None:intergenic | 35.0% |
!! | TTTTGGAAATGCACTTGAGA+GGG | - | chr3.3:15397962-15397981 | None:intergenic | 35.0% |
!!! | ACAAATTTTTTGTGCAGCTC+TGG | - | chr3.3:15399665-15399684 | None:intergenic | 35.0% |
!!! | TCAATTTTGGTGGGTTAGTT+CGG | - | chr3.3:15398712-15398731 | None:intergenic | 35.0% |
AAAACTTCCTCAAATGGTGC+AGG | - | chr3.3:15397638-15397657 | None:intergenic | 40.0% | |
AACTTTGTGGATGCATGTAG+AGG | + | chr3.3:15398896-15398915 | MS.gene057906:intron | 40.0% | |
AAGGAATTTGGGGATGAAGA+AGG | + | chr3.3:15400106-15400125 | MS.gene057906:intron | 40.0% | |
ATGCACTTGAGAGGGATATT+AGG | - | chr3.3:15397954-15397973 | None:intergenic | 40.0% | |
ATGGTATACACTCAGCAATG+TGG | + | chr3.3:15397012-15397031 | MS.gene057906:CDS | 40.0% | |
ATTGTATCCTGCACCATTTG+AGG | + | chr3.3:15397628-15397647 | MS.gene057906:CDS | 40.0% | |
CATAGGTGAATTGTGGTGTT+GGG | - | chr3.3:15398121-15398140 | None:intergenic | 40.0% | |
CATCTTACGTTTGGATACCA+AGG | - | chr3.3:15397331-15397350 | None:intergenic | 40.0% | |
CGCTATTCCTTCTCGAATAT+TGG | + | chr3.3:15399715-15399734 | MS.gene057906:CDS | 40.0% | |
CTTGAACCTTGTAAATGGGT+TGG | + | chr3.3:15400043-15400062 | MS.gene057906:intron | 40.0% | |
GAATTGCATTACCGTTGAAG+GGG | - | chr3.3:15399218-15399237 | None:intergenic | 40.0% | |
GAGAATTGCATTACCGTTGA+AGG | - | chr3.3:15399220-15399239 | None:intergenic | 40.0% | |
GGATCTGTGTGTATCATTGA+TGG | - | chr3.3:15398434-15398453 | None:intergenic | 40.0% | |
GGCTGAAAGATTATCACAAG+AGG | + | chr3.3:15397682-15397701 | MS.gene057906:CDS | 40.0% | |
GGTTATAATCTACCTTCCCA+CGG | + | chr3.3:15399790-15399809 | MS.gene057906:intron | 40.0% | |
TAAGGGACTAGATATTCCAG+CGG | + | chr3.3:15397279-15397298 | MS.gene057906:CDS | 40.0% | |
TATGCCTTGCTCAAACTTTG+TGG | + | chr3.3:15398883-15398902 | MS.gene057906:intron | 40.0% | |
TCAAATGGTGCAGGATACAA+TGG | - | chr3.3:15397629-15397648 | None:intergenic | 40.0% | |
TCATAGGTGAATTGTGGTGT+TGG | - | chr3.3:15398122-15398141 | None:intergenic | 40.0% | |
! | ATGTGGTACAACGCTTCTTT+TGG | + | chr3.3:15397029-15397048 | MS.gene057906:CDS | 40.0% |
! | TATGAGTAAGGGCGTGAATA+TGG | + | chr3.3:15398582-15398601 | MS.gene057906:intron | 40.0% |
! | TGGTGCCAATTTGTCTTCAT+TGG | + | chr3.3:15397814-15397833 | MS.gene057906:intron | 40.0% |
!! | CTTTTGGAAATGCACTTGAG+AGG | - | chr3.3:15397963-15397982 | None:intergenic | 40.0% |
!! | GCATGTAGAGGTGATTTGTT+TGG | + | chr3.3:15398908-15398927 | MS.gene057906:intron | 40.0% |
!! | TACTTTGGTCTTAGGTACAC+TGG | + | chr3.3:15399636-15399655 | MS.gene057906:intron | 40.0% |
AACTACCTACTAGCTAGCTG+CGG | + | chr3.3:15399192-15399211 | MS.gene057906:intron | 45.0% | |
AATGATGACAGTTTGCCGAG+AGG | - | chr3.3:15398240-15398259 | None:intergenic | 45.0% | |
ATCTGGGCTCACAAAGGAAA+TGG | - | chr3.3:15397466-15397485 | None:intergenic | 45.0% | |
CATTTCCGATCATCCTGCTT+CGG | - | chr3.3:15399965-15399984 | None:intergenic | 45.0% | |
CCTTGAATGCGTTCAAGTCT+GGG | + | chr3.3:15397221-15397240 | MS.gene057906:CDS | 45.0% | |
CTTGAATGCGTTCAAGTCTG+GGG | + | chr3.3:15397222-15397241 | MS.gene057906:CDS | 45.0% | |
GAGACATATCTTACCGAAGC+AGG | + | chr3.3:15399949-15399968 | MS.gene057906:intron | 45.0% | |
GAGTCAGGTAACTGTACTAC+AGG | + | chr3.3:15397104-15397123 | MS.gene057906:intron | 45.0% | |
GCATCCACAAAGTTTGAGCA+AGG | - | chr3.3:15398890-15398909 | None:intergenic | 45.0% | |
TAATGTGGCAAGCCATCTTC+AGG | + | chr3.3:15399769-15399788 | MS.gene057906:CDS | 45.0% | |
TCCTTGAATGCGTTCAAGTC+TGG | + | chr3.3:15397220-15397239 | MS.gene057906:CDS | 45.0% | |
TCTTACCGAAGCAGGATGAT+CGG | + | chr3.3:15399957-15399976 | MS.gene057906:intron | 45.0% | |
! | TTTGGAAGGGTGTGCTATTG+AGG | + | chr3.3:15397661-15397680 | MS.gene057906:CDS | 45.0% |
!! | AGTTTTTGGAAACCGTGGGA+AGG | - | chr3.3:15399805-15399824 | None:intergenic | 45.0% |
!! | AGAAATAATTAATAAATTAA+AGG | + | chr3.3:15399042-15399061 | MS.gene057906:intron | 5.0% |
!!! | ATTTATTTATTTATTTTTTC+AGG | + | chr3.3:15397593-15397612 | MS.gene057906:intron | 5.0% |
ACAGGATTACATCTACCGCG+TGG | + | chr3.3:15397413-15397432 | MS.gene057906:intron | 50.0% | |
ATTACATCTACCGCGTGGGA+TGG | + | chr3.3:15397418-15397437 | MS.gene057906:CDS | 50.0% | |
CAGGATTACATCTACCGCGT+GGG | + | chr3.3:15397414-15397433 | MS.gene057906:intron | 50.0% | |
CCCAGACTTGAACGCATTCA+AGG | - | chr3.3:15397224-15397243 | None:intergenic | 50.0% | |
CCTTTCATCTGGGCTCACAA+AGG | - | chr3.3:15397472-15397491 | None:intergenic | 50.0% | |
CCTTTGTGAGCCCAGATGAA+AGG | + | chr3.3:15397469-15397488 | MS.gene057906:CDS | 50.0% | |
CGAAGCAGGATGATCGGAAA+TGG | + | chr3.3:15399963-15399982 | MS.gene057906:intron | 50.0% | |
CTCATGACCGTGTGATCAAC+AGG | + | chr3.3:15397395-15397414 | MS.gene057906:intron | 50.0% | |
GGGCTTGACAAGGCATAATG+TGG | + | chr3.3:15399754-15399773 | MS.gene057906:CDS | 50.0% | |
TGAAAGTGGAGGGCTTGACA+AGG | + | chr3.3:15399744-15399763 | MS.gene057906:CDS | 50.0% | |
TGTGAGGTGTGGGAAGAAGA+GGG | - | chr3.3:15398399-15398418 | None:intergenic | 50.0% | |
GGAGTTGGGACAACTGTCGT+TGG | + | chr3.3:15399138-15399157 | MS.gene057906:intron | 55.0% | |
GTGAAGGCAGTGGAGCAACT+AGG | + | chr3.3:15399683-15399702 | MS.gene057906:CDS | 55.0% | |
GTGTGAGGTGTGGGAAGAAG+AGG | - | chr3.3:15398400-15398419 | None:intergenic | 55.0% | |
GAGCAACAGTCCATCCCACG+CGG | - | chr3.3:15397431-15397450 | None:intergenic | 60.0% | |
GGGACAACTGTCGTTGGCAG+AGG | + | chr3.3:15399144-15399163 | MS.gene057906:intron | 60.0% | |
AGGGGCCGCAGCTAGCTAGT+AGG | - | chr3.3:15399200-15399219 | None:intergenic | 65.0% | |
GCTAGCTGCGGCCCCTTCAA+CGG | + | chr3.3:15399204-15399223 | MS.gene057906:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 15396994 | 15400132 | 15396994 | ID=MS.gene057906 |
chr3.3 | mRNA | 15396994 | 15400132 | 15396994 | ID=MS.gene057906.t1;Parent=MS.gene057906 |
chr3.3 | exon | 15396994 | 15397110 | 15396994 | ID=MS.gene057906.t1.exon1;Parent=MS.gene057906.t1 |
chr3.3 | CDS | 15396994 | 15397110 | 15396994 | ID=cds.MS.gene057906.t1;Parent=MS.gene057906.t1 |
chr3.3 | exon | 15397205 | 15397342 | 15397205 | ID=MS.gene057906.t1.exon2;Parent=MS.gene057906.t1 |
chr3.3 | CDS | 15397205 | 15397342 | 15397205 | ID=cds.MS.gene057906.t1;Parent=MS.gene057906.t1 |
chr3.3 | exon | 15397417 | 15397522 | 15397417 | ID=MS.gene057906.t1.exon3;Parent=MS.gene057906.t1 |
chr3.3 | CDS | 15397417 | 15397522 | 15397417 | ID=cds.MS.gene057906.t1;Parent=MS.gene057906.t1 |
chr3.3 | exon | 15397615 | 15397703 | 15397615 | ID=MS.gene057906.t1.exon4;Parent=MS.gene057906.t1 |
chr3.3 | CDS | 15397615 | 15397703 | 15397615 | ID=cds.MS.gene057906.t1;Parent=MS.gene057906.t1 |
chr3.3 | exon | 15399650 | 15399790 | 15399650 | ID=MS.gene057906.t1.exon5;Parent=MS.gene057906.t1 |
chr3.3 | CDS | 15399650 | 15399790 | 15399650 | ID=cds.MS.gene057906.t1;Parent=MS.gene057906.t1 |
chr3.3 | exon | 15400109 | 15400132 | 15400109 | ID=MS.gene057906.t1.exon6;Parent=MS.gene057906.t1 |
chr3.3 | CDS | 15400109 | 15400132 | 15400109 | ID=cds.MS.gene057906.t1;Parent=MS.gene057906.t1 |
Gene Sequence |
Protein sequence |