Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058107.t1 | XP_003610850.1 | 94.6 | 539 | 28 | 1 | 1 | 538 | 1 | 539 | 2.20E-268 | 934.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058107.t1 | Q9LW77 | 77.7 | 413 | 87 | 3 | 1 | 409 | 1 | 412 | 1.4e-173 | 610.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058107.t1 | G7K6H0 | 94.6 | 539 | 28 | 1 | 1 | 538 | 1 | 539 | 1.6e-268 | 934.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene058107 | MS.gene052128 | PPI |
| MS.gene058107 | MS.gene31164 | PPI |
| MS.gene058107 | MS.gene30950 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058107.t1 | MTR_5g007710 | 97.403 | 539 | 13 | 1 | 1 | 538 | 1 | 539 | 0.0 | 1094 |
| MS.gene058107.t1 | MTR_5g007710 | 98.522 | 406 | 6 | 0 | 1 | 406 | 1 | 406 | 0.0 | 834 |
| MS.gene058107.t1 | MTR_4g077800 | 73.546 | 533 | 106 | 5 | 1 | 526 | 1 | 505 | 0.0 | 771 |
| MS.gene058107.t1 | MTR_4g077800 | 75.992 | 504 | 97 | 5 | 1 | 497 | 1 | 487 | 0.0 | 758 |
| MS.gene058107.t1 | MTR_3g007760 | 27.838 | 370 | 207 | 11 | 29 | 356 | 57 | 408 | 4.08e-30 | 124 |
| MS.gene058107.t1 | MTR_3g007760 | 27.434 | 339 | 192 | 10 | 62 | 356 | 57 | 385 | 6.85e-28 | 117 |
| MS.gene058107.t1 | MTR_4g077703 | 44.706 | 85 | 33 | 2 | 411 | 490 | 25 | 100 | 3.76e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058107.t1 | AT3G16090 | 65.660 | 530 | 133 | 9 | 1 | 526 | 1 | 485 | 0.0 | 672 |
| MS.gene058107.t1 | AT1G65040 | 72.727 | 418 | 110 | 2 | 1 | 414 | 1 | 418 | 0.0 | 633 |
| MS.gene058107.t1 | AT1G65040 | 69.378 | 418 | 101 | 3 | 1 | 414 | 1 | 395 | 0.0 | 591 |
| MS.gene058107.t1 | AT1G65040 | 71.382 | 304 | 83 | 2 | 115 | 414 | 44 | 347 | 1.49e-157 | 454 |
| MS.gene058107.t1 | AT1G65040 | 66.667 | 300 | 73 | 3 | 119 | 414 | 1 | 277 | 2.64e-138 | 403 |
| MS.gene058107.t1 | AT1G65040 | 72.727 | 231 | 60 | 1 | 176 | 403 | 23 | 253 | 2.39e-121 | 357 |
| MS.gene058107.t1 | AT1G65040 | 71.967 | 239 | 63 | 2 | 180 | 414 | 1 | 239 | 2.60e-121 | 358 |
| MS.gene058107.t1 | AT4G25230 | 28.378 | 370 | 212 | 9 | 4 | 330 | 20 | 379 | 3.50e-28 | 119 |
| MS.gene058107.t1 | AT4G25230 | 28.378 | 370 | 212 | 9 | 4 | 330 | 20 | 379 | 3.50e-28 | 119 |
| MS.gene058107.t1 | AT4G25230 | 28.378 | 370 | 212 | 9 | 4 | 330 | 20 | 379 | 3.50e-28 | 119 |
| MS.gene058107.t1 | AT5G51450 | 26.882 | 372 | 220 | 9 | 25 | 354 | 42 | 403 | 7.32e-22 | 99.8 |
| MS.gene058107.t1 | AT5G51450 | 26.882 | 372 | 220 | 9 | 25 | 354 | 42 | 403 | 7.46e-22 | 99.8 |
| MS.gene058107.t1 | AT2G44581 | 41.250 | 80 | 40 | 3 | 265 | 338 | 44 | 122 | 4.90e-12 | 64.3 |
| MS.gene058107.t1 | AT5G01960 | 32.812 | 128 | 80 | 4 | 214 | 337 | 285 | 410 | 1.39e-11 | 67.0 |
Find 122 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGAGACTTTGAGATATT+TGG | 0.085151 | 5.4:-3007563 | None:intergenic |
| CACTGCATTGTTGTTAATTA+AGG | 0.141626 | 5.4:+3004369 | MS.gene058107:CDS |
| TAAAAGATACAATTCGAATA+TGG | 0.213863 | 5.4:-3004459 | None:intergenic |
| TACATGGCCTCTTTGAATTA+TGG | 0.227378 | 5.4:+3007521 | MS.gene058107:CDS |
| AGCTCTTCAGGGGTTGCTTC+TGG | 0.229501 | 5.4:-3005747 | None:intergenic |
| GGAGGAAAGGGTACATTTAT+TGG | 0.248039 | 5.4:-3007464 | None:intergenic |
| CTATGTCACTGACATACTTA+TGG | 0.261500 | 5.4:+3005218 | MS.gene058107:CDS |
| TCTACCAGTGTTGATCTTAA+TGG | 0.263034 | 5.4:+3007389 | MS.gene058107:CDS |
| TCTCGTATAGCTCCCGTATT+AGG | 0.318051 | 5.4:-3005647 | None:intergenic |
| GGGAGCTATACGAGACATTT+AGG | 0.322570 | 5.4:+3005655 | MS.gene058107:CDS |
| ACTCACGCATTGAGCTCTTC+AGG | 0.330562 | 5.4:-3005759 | None:intergenic |
| TTGCCTCTGCTTTCTGATGA+TGG | 0.348191 | 5.4:-3007805 | None:intergenic |
| CTCAAATTTACAAGATCTCC+TGG | 0.369821 | 5.4:+3007338 | MS.gene058107:intron |
| AAGAAGCACCAAACTGATCT+TGG | 0.383609 | 5.4:-3004164 | None:intergenic |
| GCAATCATGGAGGGAGGTTA+TGG | 0.389288 | 5.4:+3004285 | MS.gene058107:CDS |
| ACAATCAGATGGTCATCAAC+AGG | 0.391362 | 5.4:+3006051 | MS.gene058107:CDS |
| GAAGGCAATGAACATGAAAA+AGG | 0.391922 | 5.4:-3005931 | None:intergenic |
| AATTAAGGCTTTACATTGGT+TGG | 0.392154 | 5.4:+3004384 | MS.gene058107:CDS |
| AGTTGATCTATCAGAAACTA+TGG | 0.394151 | 5.4:+3005612 | MS.gene058107:intron |
| GAATTCCCTTGCACCTAATA+CGG | 0.394661 | 5.4:+3005634 | MS.gene058107:CDS |
| ATATGCTGGTCTTAGTTTGA+TGG | 0.410943 | 5.4:+3004066 | MS.gene058107:CDS |
| CCATCTTGAATCTCCGAAGA+AGG | 0.414407 | 5.4:-3007835 | None:intergenic |
| AAAAGATACAATTCGAATAT+GGG | 0.417391 | 5.4:-3004458 | None:intergenic |
| TCTGTGGCAACTTACTAAAA+AGG | 0.420120 | 5.4:+3004216 | MS.gene058107:CDS |
| ACACCATTGCCGGATAAAAC+TGG | 0.424380 | 5.4:-3004129 | None:intergenic |
| TCTTAGTTTGATGGCAACTT+TGG | 0.428785 | 5.4:+3004075 | MS.gene058107:CDS |
| TTCAACTTCCAAGATCAGTT+TGG | 0.429813 | 5.4:+3004156 | MS.gene058107:CDS |
| ATGTTCATTGCCTTCGATCA+TGG | 0.435620 | 5.4:+3005939 | MS.gene058107:CDS |
| AACTGCTGCTGGAGGTCAGC+AGG | 0.439414 | 5.4:+3006024 | MS.gene058107:CDS |
| TTGCCCTACTTGCAGAGCCT+TGG | 0.442641 | 5.4:+3005979 | MS.gene058107:CDS |
| ACACTGGTAGATTCAGCAAC+CGG | 0.446332 | 5.4:-3007377 | None:intergenic |
| TCTTCCTTCCCAACCATACA+TGG | 0.446384 | 5.4:+3007505 | MS.gene058107:CDS |
| GTTGAAAGATACACCATTGC+CGG | 0.449042 | 5.4:-3004139 | None:intergenic |
| AATGTACCCTTTCCTCCAAC+AGG | 0.449335 | 5.4:+3007470 | MS.gene058107:CDS |
| TGCCGCCCCACTGCCAAGCT+CGG | 0.454269 | 5.4:-3006283 | None:intergenic |
| ATGGTTGGGAAGGAAGAAAA+TGG | 0.454733 | 5.4:-3007499 | None:intergenic |
| CAACCAAGGCTCTGCAAGTA+GGG | 0.460830 | 5.4:-3005982 | None:intergenic |
| CTCACGCATTGAGCTCTTCA+GGG | 0.465783 | 5.4:-3005758 | None:intergenic |
| TTTGGTGCTTCTTCTTAACA+TGG | 0.467442 | 5.4:+3004174 | MS.gene058107:CDS |
| AGGCAAGCTTAGCCCTTCTT+CGG | 0.472020 | 5.4:+3007822 | MS.gene058107:CDS |
| AAATATCTCAAAGTCTCAGC+TGG | 0.472616 | 5.4:+3007565 | MS.gene058107:CDS |
| GAAAATGGAACAACTGCTGC+TGG | 0.475916 | 5.4:+3006013 | MS.gene058107:CDS |
| CTCTGTTACATTCCTTGCGA+TGG | 0.480228 | 5.4:+3004345 | MS.gene058107:CDS |
| GGTACATTTATTGGCCCACC+GGG | 0.481022 | 5.4:-3007455 | None:intergenic |
| AAGTGTCCTGTTGGAGGAAA+GGG | 0.484734 | 5.4:-3007476 | None:intergenic |
| CAAAGAGGCCATGTATGGTT+GGG | 0.485097 | 5.4:-3007513 | None:intergenic |
| TACCGTACAAAAGAAGTTGC+GGG | 0.488992 | 5.4:-3006390 | None:intergenic |
| CACTGGTAGATTCAGCAACC+GGG | 0.502423 | 5.4:-3007376 | None:intergenic |
| TCAAAGAGGCCATGTATGGT+TGG | 0.504066 | 5.4:-3007514 | None:intergenic |
| GGTCAAACCGAGCTTGGCAG+TGG | 0.508618 | 5.4:+3006276 | MS.gene058107:CDS |
| GGGTAATCTTCGAGAGGCTG+AGG | 0.510249 | 5.4:+3004246 | MS.gene058107:CDS |
| TAATTCAAAGAGGCCATGTA+TGG | 0.511475 | 5.4:-3007518 | None:intergenic |
| AGAGGCTTAATGAGCAATCA+TGG | 0.512252 | 5.4:+3004272 | MS.gene058107:CDS |
| AAGCTGCAGCAGCAGCTGCT+TGG | 0.515752 | 5.4:-3006338 | None:intergenic |
| AGTACAGGTCAAACCGAGCT+TGG | 0.522407 | 5.4:+3006270 | MS.gene058107:CDS |
| GAAGTGTCCTGTTGGAGGAA+AGG | 0.525016 | 5.4:-3007477 | None:intergenic |
| GGGACAGGCACTGGAAGTAC+AGG | 0.525139 | 5.4:+3006255 | MS.gene058107:intron |
| GTCAAACCGAGCTTGGCAGT+GGG | 0.527655 | 5.4:+3006277 | MS.gene058107:CDS |
| GCCTCTTTGAATTATGGAGA+GGG | 0.532058 | 5.4:+3007527 | MS.gene058107:CDS |
| TTGGTGCTTCTTCTTAACAT+GGG | 0.533149 | 5.4:+3004175 | MS.gene058107:CDS |
| TCGAGGTAAAATGTGAAGAC+TGG | 0.536892 | 5.4:-3005261 | None:intergenic |
| AAAGAAGAAGCACAGATACA+TGG | 0.542978 | 5.4:-3005310 | None:intergenic |
| CATCTTGAATCTCCGAAGAA+GGG | 0.544147 | 5.4:-3007834 | None:intergenic |
| AAATGGAAGTGTCCTGTTGG+AGG | 0.548423 | 5.4:-3007482 | None:intergenic |
| AATTCCCTTGCACCTAATAC+GGG | 0.549400 | 5.4:+3005635 | MS.gene058107:CDS |
| ACAACCAAGGCTCTGCAAGT+AGG | 0.549795 | 5.4:-3005983 | None:intergenic |
| GGGTACATTTATTGGCCCAC+CGG | 0.553308 | 5.4:-3007456 | None:intergenic |
| TTCGAGAGGCTGAGGTTGAG+AGG | 0.554605 | 5.4:+3004254 | MS.gene058107:CDS |
| AAATGCTATCTAGAAGAAGA+AGG | 0.561235 | 5.4:-3004489 | None:intergenic |
| ACATTTGATACAAACATGGC+AGG | 0.563896 | 5.4:+3004531 | MS.gene058107:CDS |
| CCTTCTTCGGAGATTCAAGA+TGG | 0.565004 | 5.4:+3007835 | MS.gene058107:CDS |
| CAAAATCAGTTTCATATCCC+CGG | 0.567179 | 5.4:+3007437 | MS.gene058107:CDS |
| GGCCTCTACTGTTAAATGCA+TGG | 0.568487 | 5.4:-3004108 | None:intergenic |
| TAGTTATTATGTGTGTTCTG+TGG | 0.572305 | 5.4:+3004200 | MS.gene058107:CDS |
| AATTCTACAACAACAGATTG+AGG | 0.573465 | 5.4:+3007601 | MS.gene058107:CDS |
| AGAAAATGGAAGTGTCCTGT+TGG | 0.573981 | 5.4:-3007485 | None:intergenic |
| TAGCTCCCGTATTAGGTGCA+AGG | 0.580282 | 5.4:-3005640 | None:intergenic |
| TCAAATTTACAAGATCTCCT+GGG | 0.583580 | 5.4:+3007339 | MS.gene058107:intron |
| GAGGCCATGTATGGTTGGGA+AGG | 0.583580 | 5.4:-3007509 | None:intergenic |
| TGGGATAATGTGGTCACTGT+AGG | 0.584012 | 5.4:-3004439 | None:intergenic |
| AACCGAGCTTGGCAGTGGGG+CGG | 0.584169 | 5.4:+3006281 | MS.gene058107:CDS |
| AGCTCCCGTATTAGGTGCAA+GGG | 0.585630 | 5.4:-3005639 | None:intergenic |
| AATTCGAATATGGGATAATG+TGG | 0.586853 | 5.4:-3004449 | None:intergenic |
| CATACTTATGGAGGGACAGT+GGG | 0.587918 | 5.4:+3005230 | MS.gene058107:CDS |
| GAAAGCAAAGAACAGTGAAA+CGG | 0.588487 | 5.4:-3004557 | None:intergenic |
| GATAAGAGAAGTGTAGATGA+CGG | 0.590928 | 5.4:+3007778 | MS.gene058107:CDS |
| TACCATGCATTTAACAGTAG+AGG | 0.591610 | 5.4:+3004106 | MS.gene058107:CDS |
| GGCCTCTTTGAATTATGGAG+AGG | 0.595038 | 5.4:+3007526 | MS.gene058107:CDS |
| TGGGTACACTAATTATCCCC+CGG | 0.598531 | 5.4:+3007358 | MS.gene058107:CDS |
| TGTCACTGACATACTTATGG+AGG | 0.600216 | 5.4:+3005221 | MS.gene058107:CDS |
| GTCACTGACATACTTATGGA+GGG | 0.607377 | 5.4:+3005222 | MS.gene058107:CDS |
| TGTTAATTAAGGCTTTACAT+TGG | 0.609042 | 5.4:+3004380 | MS.gene058107:CDS |
| TTCTCCATTAAGATCAACAC+TGG | 0.609743 | 5.4:-3007393 | None:intergenic |
| TCACGCATTGAGCTCTTCAG+GGG | 0.610326 | 5.4:-3005757 | None:intergenic |
| GCAAGTCCCTAACAAGGTCG+AGG | 0.613179 | 5.4:-3005278 | None:intergenic |
| ACATACTTATGGAGGGACAG+TGG | 0.615041 | 5.4:+3005229 | MS.gene058107:CDS |
| TAATGTGGTCACTGTAGGAG+TGG | 0.615046 | 5.4:-3004434 | None:intergenic |
| GTCGCTCTAGCCATGATCGA+AGG | 0.616148 | 5.4:-3005949 | None:intergenic |
| CAGCAGGCATCACAATCAGA+TGG | 0.619437 | 5.4:+3006040 | MS.gene058107:CDS |
| GTACCGTACAAAAGAAGTTG+CGG | 0.620554 | 5.4:-3006391 | None:intergenic |
| ATGAGGTTGAAGACATATGC+TGG | 0.621421 | 5.4:+3004052 | MS.gene058107:CDS |
| ATCAGTTTCATATCCCCGGT+GGG | 0.627843 | 5.4:+3007441 | MS.gene058107:CDS |
| TTGTGTAGAGGAACATGATG+AGG | 0.632219 | 5.4:+3004035 | None:intergenic |
| ACCCTCTCCATAATTCAAAG+AGG | 0.632280 | 5.4:-3007528 | None:intergenic |
| CGGCAACTGATAGTTTCAGT+CGG | 0.633685 | 5.4:+3006301 | MS.gene058107:CDS |
| ACAATGCAGTGACCATCGCA+AGG | 0.636559 | 5.4:-3004357 | None:intergenic |
| AATGGAACAACTGCTGCTGG+AGG | 0.637463 | 5.4:+3006016 | MS.gene058107:CDS |
| CAATCAGATGGTCATCAACA+GGG | 0.640013 | 5.4:+3006052 | MS.gene058107:CDS |
| ATTCTTGGGTAATCTTCGAG+AGG | 0.645712 | 5.4:+3004240 | MS.gene058107:CDS |
| AATCAGTTTCATATCCCCGG+TGG | 0.651435 | 5.4:+3007440 | MS.gene058107:CDS |
| GCTTAATGAGCAATCATGGA+GGG | 0.653113 | 5.4:+3004276 | MS.gene058107:CDS |
| TGAAACATTTGATACAAACA+TGG | 0.654358 | 5.4:+3004527 | MS.gene058107:CDS |
| AGTGCAGCAAGTCCCTAACA+AGG | 0.676461 | 5.4:-3005284 | None:intergenic |
| GGCTTAATGAGCAATCATGG+AGG | 0.679748 | 5.4:+3004275 | MS.gene058107:CDS |
| TCAAACCGAGCTTGGCAGTG+GGG | 0.681424 | 5.4:+3006278 | MS.gene058107:CDS |
| ACTGGTAGATTCAGCAACCG+GGG | 0.683857 | 5.4:-3007375 | None:intergenic |
| TAATGAGCAATCATGGAGGG+AGG | 0.688793 | 5.4:+3004279 | MS.gene058107:CDS |
| GCACCATCATCAGAAAGCAG+AGG | 0.693302 | 5.4:+3007802 | MS.gene058107:CDS |
| CTGGTAGATTCAGCAACCGG+GGG | 0.726671 | 5.4:-3007374 | None:intergenic |
| CGTACAAAAGAAGTTGCGGG+AGG | 0.739850 | 5.4:-3006387 | None:intergenic |
| ACAGAATCTGCAGAGCACAG+AGG | 0.756811 | 5.4:+3007756 | MS.gene058107:CDS |
| GTACATTTATTGGCCCACCG+GGG | 0.785096 | 5.4:-3007454 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCATATTCATTTTATTT+TGG | + | chr5.4:3005536-3005555 | MS.gene058107:intron | 10.0% |
| !! | AAATAATACTATCAACAATT+AGG | - | chr5.4:3004830-3004849 | None:intergenic | 15.0% |
| !! | ACATATAGTAATATGATTTA+TGG | - | chr5.4:3004904-3004923 | None:intergenic | 15.0% |
| !! | ATATAGTAATATGATTTATG+GGG | - | chr5.4:3004902-3004921 | None:intergenic | 15.0% |
| !! | CATATAGTAATATGATTTAT+GGG | - | chr5.4:3004903-3004922 | None:intergenic | 15.0% |
| !! | TAGAAAAAAAAAATCAAAAC+AGG | - | chr5.4:3007041-3007060 | None:intergenic | 15.0% |
| !! | TGTGAAAATACAAATAAAAT+AGG | - | chr5.4:3005074-3005093 | None:intergenic | 15.0% |
| !!! | ATTTATCTTTTCAAATAAAC+CGG | + | chr5.4:3004861-3004880 | MS.gene058107:intron | 15.0% |
| !! | AAAAATAAGCAAATCCAAAA+TGG | - | chr5.4:3006440-3006459 | None:intergenic | 20.0% |
| !! | AAAAGATACAATTCGAATAT+GGG | - | chr5.4:3004461-3004480 | None:intergenic | 20.0% |
| !! | ATATCTCTGTATAAATGATA+GGG | + | chr5.4:3005371-3005390 | MS.gene058107:intron | 20.0% |
| !! | ATTTACTCATTTAACCATTT+GGG | + | chr5.4:3005427-3005446 | MS.gene058107:intron | 20.0% |
| !! | CTTTCAAAAAAAATCTTGAA+TGG | - | chr5.4:3007107-3007126 | None:intergenic | 20.0% |
| !! | TAAAAATAGTAATTGCAAAG+AGG | - | chr5.4:3004315-3004334 | None:intergenic | 20.0% |
| !! | TAAAAGATACAATTCGAATA+TGG | - | chr5.4:3004462-3004481 | None:intergenic | 20.0% |
| !! | TATATCTCTGTATAAATGAT+AGG | + | chr5.4:3005370-3005389 | MS.gene058107:intron | 20.0% |
| !! | TGAAATTTCATATATCAACA+TGG | - | chr5.4:3004650-3004669 | None:intergenic | 20.0% |
| !!! | AAACAATAGTGGAATATAAT+AGG | - | chr5.4:3007017-3007036 | None:intergenic | 20.0% |
| !!! | ATTCGAATTGTATCTTTTAT+GGG | + | chr5.4:3004463-3004482 | MS.gene058107:CDS | 20.0% |
| !!! | TATTCGAATTGTATCTTTTA+TGG | + | chr5.4:3004462-3004481 | MS.gene058107:CDS | 20.0% |
| !!! | TCTTTGCAATTACTATTTTT+AGG | + | chr5.4:3004314-3004333 | MS.gene058107:CDS | 20.0% |
| ! | AAAATATGTGAGAGAAATTC+TGG | - | chr5.4:3006923-3006942 | None:intergenic | 25.0% |
| ! | ATATATCAACATGGCTTAAT+TGG | - | chr5.4:3004641-3004660 | None:intergenic | 25.0% |
| ! | GATTTACTCATTTAACCATT+TGG | + | chr5.4:3005426-3005445 | MS.gene058107:intron | 25.0% |
| ! | TAAAAAAGATAACTAGTGGA+AGG | - | chr5.4:3005579-3005598 | None:intergenic | 25.0% |
| ! | TAAAAAATAGCCAATCCAAA+CGG | + | chr5.4:3006736-3006755 | MS.gene058107:intron | 25.0% |
| ! | TAGGTAAAAAAGATAACTAG+TGG | - | chr5.4:3005583-3005602 | None:intergenic | 25.0% |
| ! | TATATCAACATGGCTTAATT+GGG | - | chr5.4:3004640-3004659 | None:intergenic | 25.0% |
| ! | TCCAAAAAAAAAGGGATATT+GGG | - | chr5.4:3006763-3006782 | None:intergenic | 25.0% |
| ! | TGAAACATTTGATACAAACA+TGG | + | chr5.4:3004527-3004546 | MS.gene058107:CDS | 25.0% |
| ! | TGTTAATTAAGGCTTTACAT+TGG | + | chr5.4:3004380-3004399 | MS.gene058107:CDS | 25.0% |
| ! | TTCCAAAAAAAAAGGGATAT+TGG | - | chr5.4:3006764-3006783 | None:intergenic | 25.0% |
| ! | TTTCAATACTAAAGCTAGTA+TGG | + | chr5.4:3007309-3007328 | MS.gene058107:intron | 25.0% |
| ! | TTTCACATCTGTTTACTATT+CGG | + | chr5.4:3005087-3005106 | MS.gene058107:intron | 25.0% |
| !! | TAAAGCAAAGTAACATTTTG+TGG | + | chr5.4:3007223-3007242 | MS.gene058107:intron | 25.0% |
| !! | TGCACTTAAAATCTAGTTTA+CGG | + | chr5.4:3005451-3005470 | MS.gene058107:intron | 25.0% |
| !! | TTGCTTTGTCAATTTAACTT+GGG | + | chr5.4:3006235-3006254 | MS.gene058107:intron | 25.0% |
| !!! | ACTTACTAAAAAGGTATTCT+TGG | + | chr5.4:3004225-3004244 | MS.gene058107:CDS | 25.0% |
| !!! | ATATCCCTTTTTTTTTGGAA+CGG | + | chr5.4:3006764-3006783 | MS.gene058107:intron | 25.0% |
| !!! | CAATATCATCAGAGTTTTTT+TGG | + | chr5.4:3004725-3004744 | MS.gene058107:intron | 25.0% |
| !!! | CTTACTAAAAAGGTATTCTT+GGG | + | chr5.4:3004226-3004245 | MS.gene058107:CDS | 25.0% |
| !!! | GTATTATCAGTATTTTGAGT+TGG | - | chr5.4:3007270-3007289 | None:intergenic | 25.0% |
| !!! | TTTGAATTGCATATTTTGAG+TGG | + | chr5.4:3007659-3007678 | MS.gene058107:intron | 25.0% |
| AAAAAATAGCCAATCCAAAC+GGG | + | chr5.4:3006737-3006756 | MS.gene058107:intron | 30.0% | |
| AAATGCTATCTAGAAGAAGA+AGG | - | chr5.4:3004492-3004511 | None:intergenic | 30.0% | |
| AATCAAATTACGCAATACCT+AGG | + | chr5.4:3004991-3005010 | MS.gene058107:intron | 30.0% | |
| AATTAAGGCTTTACATTGGT+TGG | + | chr5.4:3004384-3004403 | MS.gene058107:CDS | 30.0% | |
| AATTCGAATATGGGATAATG+TGG | - | chr5.4:3004452-3004471 | None:intergenic | 30.0% | |
| AATTCTACAACAACAGATTG+AGG | + | chr5.4:3007601-3007620 | MS.gene058107:CDS | 30.0% | |
| ACCAAAACACACAAGTATAA+AGG | - | chr5.4:3005121-3005140 | None:intergenic | 30.0% | |
| ACGTAATTGACAATGATACT+TGG | + | chr5.4:3005474-3005493 | MS.gene058107:intron | 30.0% | |
| AGTTCCAAAAAAGGGATATT+GGG | - | chr5.4:3006651-3006670 | None:intergenic | 30.0% | |
| AGTTGATCTATCAGAAACTA+TGG | + | chr5.4:3005612-3005631 | MS.gene058107:intron | 30.0% | |
| ATAAGCCGTTCCAAAAAAAA+AGG | - | chr5.4:3006772-3006791 | None:intergenic | 30.0% | |
| ATACTCTTCAGAATAGTTCT+CGG | + | chr5.4:3006894-3006913 | MS.gene058107:intron | 30.0% | |
| CCAAAACACACAAGTATAAA+GGG | - | chr5.4:3005120-3005139 | None:intergenic | 30.0% | |
| CGTAATTGACAATGATACTT+GGG | + | chr5.4:3005475-3005494 | MS.gene058107:intron | 30.0% | |
| CTTGCTTTGTCAATTTAACT+TGG | + | chr5.4:3006234-3006253 | MS.gene058107:intron | 30.0% | |
| GTAATTGACAATGATACTTG+GGG | + | chr5.4:3005476-3005495 | MS.gene058107:intron | 30.0% | |
| TAAGCCGTTCCAAAAAAAAA+GGG | - | chr5.4:3006771-3006790 | None:intergenic | 30.0% | |
| TAGTTATTATGTGTGTTCTG+TGG | + | chr5.4:3004200-3004219 | MS.gene058107:CDS | 30.0% | |
| TCAAAACAGGAAAACAATAG+TGG | - | chr5.4:3007028-3007047 | None:intergenic | 30.0% | |
| TCAAATTTACAAGATCTCCT+GGG | + | chr5.4:3007339-3007358 | MS.gene058107:intron | 30.0% | |
| TGCAGAATCTGTTTAAAAGT+GGG | - | chr5.4:3007727-3007746 | None:intergenic | 30.0% | |
| TTCACATAATGATCATGTCA+TGG | + | chr5.4:3004666-3004685 | MS.gene058107:intron | 30.0% | |
| TTGCAGAATCTGTTTAAAAG+TGG | - | chr5.4:3007728-3007747 | None:intergenic | 30.0% | |
| ! | AGTTCACATGTTTGCTAAAA+TGG | + | chr5.4:3007192-3007211 | MS.gene058107:intron | 30.0% |
| ! | CACTGCATTGTTGTTAATTA+AGG | + | chr5.4:3004369-3004388 | MS.gene058107:CDS | 30.0% |
| ! | TAGATCAACTTCAAGTTAGT+AGG | - | chr5.4:3005602-3005621 | None:intergenic | 30.0% |
| ! | TTTTAGCAAACATGTGAACT+AGG | - | chr5.4:3007192-3007211 | None:intergenic | 30.0% |
| !! | ATTCTGAAGAGTATTACACA+AGG | - | chr5.4:3006888-3006907 | None:intergenic | 30.0% |
| !!! | ATCAGAGTTTTTTTGGCATA+GGG | + | chr5.4:3004732-3004751 | MS.gene058107:intron | 30.0% |
| !!! | TGCAATTACTATTTTTAGGC+AGG | + | chr5.4:3004318-3004337 | MS.gene058107:CDS | 30.0% |
| AAATATCTCAAAGTCTCAGC+TGG | + | chr5.4:3007565-3007584 | MS.gene058107:CDS | 35.0% | |
| AACGAAAGCAGTTCCAAAAA+AGG | - | chr5.4:3006660-3006679 | None:intergenic | 35.0% | |
| AATCTGTTTAAAAGTGGGAG+AGG | - | chr5.4:3007722-3007741 | None:intergenic | 35.0% | |
| ACATTTGATACAAACATGGC+AGG | + | chr5.4:3004531-3004550 | MS.gene058107:CDS | 35.0% | |
| ACGAAAGCAGTTCCAAAAAA+GGG | - | chr5.4:3006659-3006678 | None:intergenic | 35.0% | |
| ATCTGTTTAAAAGTGGGAGA+GGG | - | chr5.4:3007721-3007740 | None:intergenic | 35.0% | |
| ATGAAATCTGTGCTATGTTG+TGG | + | chr5.4:3006790-3006809 | MS.gene058107:intron | 35.0% | |
| CAAAAATAGCCAATCCAAAC+AGG | + | chr5.4:3006625-3006644 | MS.gene058107:intron | 35.0% | |
| CAAAATCAGTTTCATATCCC+CGG | + | chr5.4:3007437-3007456 | MS.gene058107:CDS | 35.0% | |
| CAGTTCCAAAAAAGGGATAT+TGG | - | chr5.4:3006652-3006671 | None:intergenic | 35.0% | |
| CTATGTCACTGACATACTTA+TGG | + | chr5.4:3005218-3005237 | MS.gene058107:CDS | 35.0% | |
| CTCAAATTTACAAGATCTCC+TGG | + | chr5.4:3007338-3007357 | MS.gene058107:intron | 35.0% | |
| CTTGTCAGTAATATGCAAGA+TGG | + | chr5.4:3006125-3006144 | MS.gene058107:intron | 35.0% | |
| GAAAGCAAAGAACAGTGAAA+CGG | - | chr5.4:3004560-3004579 | None:intergenic | 35.0% | |
| GAAGGCAATGAACATGAAAA+AGG | - | chr5.4:3005934-3005953 | None:intergenic | 35.0% | |
| GATAATCACTCACTGTATGT+AGG | + | chr5.4:3006087-3006106 | MS.gene058107:intron | 35.0% | |
| TAATTCAAAGAGGCCATGTA+TGG | - | chr5.4:3007521-3007540 | None:intergenic | 35.0% | |
| TACATGGCCTCTTTGAATTA+TGG | + | chr5.4:3007521-3007540 | MS.gene058107:CDS | 35.0% | |
| TACCATGCATTTAACAGTAG+AGG | + | chr5.4:3004106-3004125 | MS.gene058107:CDS | 35.0% | |
| TAGGAGGAAAAGGAATAAGA+AGG | - | chr5.4:3004590-3004609 | None:intergenic | 35.0% | |
| TCTGTGGCAACTTACTAAAA+AGG | + | chr5.4:3004216-3004235 | MS.gene058107:CDS | 35.0% | |
| TTCAACTTCCAAGATCAGTT+TGG | + | chr5.4:3004156-3004175 | MS.gene058107:CDS | 35.0% | |
| TTCTCCATTAAGATCAACAC+TGG | - | chr5.4:3007396-3007415 | None:intergenic | 35.0% | |
| TTGAAAGATTGAGTATGCTC+TGG | + | chr5.4:3007120-3007139 | MS.gene058107:intron | 35.0% | |
| ! | AAAGAAGAAGCACAGATACA+TGG | - | chr5.4:3005313-3005332 | None:intergenic | 35.0% |
| ! | AAGCGTGTAGTTTTCATCTT+TGG | + | chr5.4:3006982-3007001 | MS.gene058107:intron | 35.0% |
| ! | AGCGTGTAGTTTTCATCTTT+GGG | + | chr5.4:3006983-3007002 | MS.gene058107:intron | 35.0% |
| ! | ATTTTACCTCGACCTTGTTA+GGG | + | chr5.4:3005272-3005291 | MS.gene058107:CDS | 35.0% |
| ! | CCCTTTATACTTGTGTGTTT+TGG | + | chr5.4:3005117-3005136 | MS.gene058107:intron | 35.0% |
| ! | GATAAGAGAAGTGTAGATGA+CGG | + | chr5.4:3007778-3007797 | MS.gene058107:CDS | 35.0% |
| ! | TCTTAGTTTGATGGCAACTT+TGG | + | chr5.4:3004075-3004094 | MS.gene058107:CDS | 35.0% |
| ! | TTGGTGCTTCTTCTTAACAT+GGG | + | chr5.4:3004175-3004194 | MS.gene058107:CDS | 35.0% |
| !! | AGCTGAGACTTTGAGATATT+TGG | - | chr5.4:3007566-3007585 | None:intergenic | 35.0% |
| !! | ATATGCTGGTCTTAGTTTGA+TGG | + | chr5.4:3004066-3004085 | MS.gene058107:CDS | 35.0% |
| !! | GATTTTAAGTGCAACCCAAA+TGG | - | chr5.4:3005444-3005463 | None:intergenic | 35.0% |
| !! | TCTACCAGTGTTGATCTTAA+TGG | + | chr5.4:3007389-3007408 | MS.gene058107:CDS | 35.0% |
| !! | TTGTCAATTTAACTTGGGAC+AGG | + | chr5.4:3006240-3006259 | MS.gene058107:intron | 35.0% |
| !! | TTTGGTGCTTCTTCTTAACA+TGG | + | chr5.4:3004174-3004193 | MS.gene058107:CDS | 35.0% |
| !!! | CATCAGAGTTTTTTTGGCAT+AGG | + | chr5.4:3004731-3004750 | MS.gene058107:intron | 35.0% |
| !!! | GCCCAATATCCCTTTTTTTT+TGG | + | chr5.4:3006759-3006778 | MS.gene058107:intron | 35.0% |
| !!! | GTGTCCACATATCAGTTTTT+TGG | - | chr5.4:3005912-3005931 | None:intergenic | 35.0% |
| !!! | TGCTTATTTTTGAGCTTGTG+CGG | + | chr5.4:3006449-3006468 | MS.gene058107:intron | 35.0% |
| AACTCATCAGTAGGAGGAAA+AGG | - | chr5.4:3004600-3004619 | None:intergenic | 40.0% | |
| AATTCCCTTGCACCTAATAC+GGG | + | chr5.4:3005635-3005654 | MS.gene058107:CDS | 40.0% | |
| ACAATCAGATGGTCATCAAC+AGG | + | chr5.4:3006051-3006070 | MS.gene058107:CDS | 40.0% | |
| ACCCTCTCCATAATTCAAAG+AGG | - | chr5.4:3007531-3007550 | None:intergenic | 40.0% | |
| AGAGGCTTAATGAGCAATCA+TGG | + | chr5.4:3004272-3004291 | MS.gene058107:CDS | 40.0% | |
| AGTATGAGCAACTCATCAGT+AGG | - | chr5.4:3004609-3004628 | None:intergenic | 40.0% | |
| ATCTAACTGCCTAAAGAGCT+AGG | + | chr5.4:3006826-3006845 | MS.gene058107:intron | 40.0% | |
| ATGAGGTTGAAGACATATGC+TGG | + | chr5.4:3004052-3004071 | MS.gene058107:CDS | 40.0% | |
| ATGGTTGGGAAGGAAGAAAA+TGG | - | chr5.4:3007502-3007521 | None:intergenic | 40.0% | |
| ATGTTCATTGCCTTCGATCA+TGG | + | chr5.4:3005939-3005958 | MS.gene058107:CDS | 40.0% | |
| ATTCTTGGGTAATCTTCGAG+AGG | + | chr5.4:3004240-3004259 | MS.gene058107:CDS | 40.0% | |
| CAATCAGATGGTCATCAACA+GGG | + | chr5.4:3006052-3006071 | MS.gene058107:CDS | 40.0% | |
| CATCTTGAATCTCCGAAGAA+GGG | - | chr5.4:3007837-3007856 | None:intergenic | 40.0% | |
| GAATTCCCTTGCACCTAATA+CGG | + | chr5.4:3005634-3005653 | MS.gene058107:CDS | 40.0% | |
| GCAGCCAAAAAACTGATATG+TGG | + | chr5.4:3005905-3005924 | MS.gene058107:CDS | 40.0% | |
| GCCTCTTTGAATTATGGAGA+GGG | + | chr5.4:3007527-3007546 | MS.gene058107:CDS | 40.0% | |
| GCTTAATGAGCAATCATGGA+GGG | + | chr5.4:3004276-3004295 | MS.gene058107:CDS | 40.0% | |
| GTACCGTACAAAAGAAGTTG+CGG | - | chr5.4:3006394-3006413 | None:intergenic | 40.0% | |
| GTCACTGACATACTTATGGA+GGG | + | chr5.4:3005222-3005241 | MS.gene058107:CDS | 40.0% | |
| GTTGAAAGATACACCATTGC+CGG | - | chr5.4:3004142-3004161 | None:intergenic | 40.0% | |
| TACCGTACAAAAGAAGTTGC+GGG | - | chr5.4:3006393-3006412 | None:intergenic | 40.0% | |
| TAGCAAACATGTGAACTAGG+TGG | - | chr5.4:3007189-3007208 | None:intergenic | 40.0% | |
| TCGAGGTAAAATGTGAAGAC+TGG | - | chr5.4:3005264-3005283 | None:intergenic | 40.0% | |
| TCTGTTTAAAAGTGGGAGAG+GGG | - | chr5.4:3007720-3007739 | None:intergenic | 40.0% | |
| TGTCACTGACATACTTATGG+AGG | + | chr5.4:3005221-3005240 | MS.gene058107:CDS | 40.0% | |
| ! | AGCAGTTGTTCCATTTTCTG+GGG | - | chr5.4:3006011-3006030 | None:intergenic | 40.0% |
| ! | CAGCAGTTGTTCCATTTTCT+GGG | - | chr5.4:3006012-3006031 | None:intergenic | 40.0% |
| ! | CATTTTACCTCGACCTTGTT+AGG | + | chr5.4:3005271-3005290 | MS.gene058107:CDS | 40.0% |
| ! | GCAACTTCTTTTGTACGGTA+CGG | + | chr5.4:3006393-3006412 | MS.gene058107:intron | 40.0% |
| ! | GGAGGAAAGGGTACATTTAT+TGG | - | chr5.4:3007467-3007486 | None:intergenic | 40.0% |
| ! | TACTCTATGCCTAGCTCTTT+AGG | - | chr5.4:3006838-3006857 | None:intergenic | 40.0% |
| !! | AAGAAGCACCAAACTGATCT+TGG | - | chr5.4:3004167-3004186 | None:intergenic | 40.0% |
| !! | AAGAGTATTACACAAGGCTC+TGG | - | chr5.4:3006882-3006901 | None:intergenic | 40.0% |
| !! | AAGCTCTCTGTTTCTATCTC+AGG | + | chr5.4:3005145-3005164 | MS.gene058107:intron | 40.0% |
| !! | AGAAAATGGAAGTGTCCTGT+TGG | - | chr5.4:3007488-3007507 | None:intergenic | 40.0% |
| !! | CTGATTTTGTGCTTGTTGAC+TGG | - | chr5.4:3007426-3007445 | None:intergenic | 40.0% |
| AAAGGGATATTGGGCCTGTT+TGG | - | chr5.4:3006642-3006661 | None:intergenic | 45.0% | |
| AAGTGTCCTGTTGGAGGAAA+GGG | - | chr5.4:3007479-3007498 | None:intergenic | 45.0% | |
| AATCAGTTTCATATCCCCGG+TGG | + | chr5.4:3007440-3007459 | MS.gene058107:CDS | 45.0% | |
| AATCTGTGCTATGTTGTGGC+TGG | + | chr5.4:3006794-3006813 | MS.gene058107:intron | 45.0% | |
| AATGTACCCTTTCCTCCAAC+AGG | + | chr5.4:3007470-3007489 | MS.gene058107:CDS | 45.0% | |
| ACACCATTGCCGGATAAAAC+TGG | - | chr5.4:3004132-3004151 | None:intergenic | 45.0% | |
| ACACTGGTAGATTCAGCAAC+CGG | - | chr5.4:3007380-3007399 | None:intergenic | 45.0% | |
| ACATACTTATGGAGGGACAG+TGG | + | chr5.4:3005229-3005248 | MS.gene058107:CDS | 45.0% | |
| AGGCATAGAGTATAGCACCA+AGG | + | chr5.4:3006846-3006865 | MS.gene058107:intron | 45.0% | |
| ATCAGTTTCATATCCCCGGT+GGG | + | chr5.4:3007441-3007460 | MS.gene058107:CDS | 45.0% | |
| ATGAGCAACTCATCAGTAGG+AGG | - | chr5.4:3004606-3004625 | None:intergenic | 45.0% | |
| CAAAGAGGCCATGTATGGTT+GGG | - | chr5.4:3007516-3007535 | None:intergenic | 45.0% | |
| CATACTTATGGAGGGACAGT+GGG | + | chr5.4:3005230-3005249 | MS.gene058107:CDS | 45.0% | |
| CCATCTTGAATCTCCGAAGA+AGG | - | chr5.4:3007838-3007857 | None:intergenic | 45.0% | |
| CCTTCTTCGGAGATTCAAGA+TGG | + | chr5.4:3007835-3007854 | MS.gene058107:CDS | 45.0% | |
| CGCAATACCTAGGCAGATTA+TGG | + | chr5.4:3005001-3005020 | MS.gene058107:intron | 45.0% | |
| CGGCAACTGATAGTTTCAGT+CGG | + | chr5.4:3006301-3006320 | MS.gene058107:CDS | 45.0% | |
| CTCTGTTACATTCCTTGCGA+TGG | + | chr5.4:3004345-3004364 | MS.gene058107:CDS | 45.0% | |
| CTGTGATCCATAATCTGCCT+AGG | - | chr5.4:3005011-3005030 | None:intergenic | 45.0% | |
| GAAAATGGAACAACTGCTGC+TGG | + | chr5.4:3006013-3006032 | MS.gene058107:CDS | 45.0% | |
| GATATTGGGCCTGTTTGGAT+TGG | - | chr5.4:3006637-3006656 | None:intergenic | 45.0% | |
| GGCCTCTACTGTTAAATGCA+TGG | - | chr5.4:3004111-3004130 | None:intergenic | 45.0% | |
| GGCCTCTTTGAATTATGGAG+AGG | + | chr5.4:3007526-3007545 | MS.gene058107:CDS | 45.0% | |
| GGCTTAATGAGCAATCATGG+AGG | + | chr5.4:3004275-3004294 | MS.gene058107:CDS | 45.0% | |
| GGGAGCTATACGAGACATTT+AGG | + | chr5.4:3005655-3005674 | MS.gene058107:CDS | 45.0% | |
| GGGGTATGACATGTAATGTC+CGG | - | chr5.4:3004883-3004902 | None:intergenic | 45.0% | |
| GTGGAATATAATAGGCCGTC+AGG | - | chr5.4:3007009-3007028 | None:intergenic | 45.0% | |
| TAATGAGCAATCATGGAGGG+AGG | + | chr5.4:3004279-3004298 | MS.gene058107:CDS | 45.0% | |
| TAATGTGGTCACTGTAGGAG+TGG | - | chr5.4:3004437-3004456 | None:intergenic | 45.0% | |
| TACGGTACGGCATTTATGCT+CGG | + | chr5.4:3006406-3006425 | MS.gene058107:intron | 45.0% | |
| TCAAAGAGGCCATGTATGGT+TGG | - | chr5.4:3007517-3007536 | None:intergenic | 45.0% | |
| TCTCGTATAGCTCCCGTATT+AGG | - | chr5.4:3005650-3005669 | None:intergenic | 45.0% | |
| TCTTCCTTCCCAACCATACA+TGG | + | chr5.4:3007505-3007524 | MS.gene058107:CDS | 45.0% | |
| TGGGATAATGTGGTCACTGT+AGG | - | chr5.4:3004442-3004461 | None:intergenic | 45.0% | |
| TGGGTACACTAATTATCCCC+CGG | + | chr5.4:3007358-3007377 | MS.gene058107:CDS | 45.0% | |
| TTGCCTCTGCTTTCTGATGA+TGG | - | chr5.4:3007808-3007827 | None:intergenic | 45.0% | |
| TTGGTTGTACCCCCAGAAAA+TGG | + | chr5.4:3005998-3006017 | MS.gene058107:CDS | 45.0% | |
| ! | CTCCCGCAACTTCTTTTGTA+CGG | + | chr5.4:3006388-3006407 | MS.gene058107:CDS | 45.0% |
| ! | GCAGCAGTTGTTCCATTTTC+TGG | - | chr5.4:3006013-3006032 | None:intergenic | 45.0% |
| ! | GCAGTTGTTCCATTTTCTGG+GGG | - | chr5.4:3006010-3006029 | None:intergenic | 45.0% |
| ! | GTTTTCATCTTTGGGCCTGA+CGG | + | chr5.4:3006991-3007010 | MS.gene058107:intron | 45.0% |
| !! | AAATGGAAGTGTCCTGTTGG+AGG | - | chr5.4:3007485-3007504 | None:intergenic | 45.0% |
| !! | ATTTAACTTGGGACAGGCAC+TGG | + | chr5.4:3006246-3006265 | MS.gene058107:intron | 45.0% |
| !! | ATTTTCTGGGGGTACAACCA+AGG | - | chr5.4:3005999-3006018 | None:intergenic | 45.0% |
| !! | CAGTAGAGGCCAGTTTTATC+CGG | + | chr5.4:3004120-3004139 | MS.gene058107:CDS | 45.0% |
| !!! | CAGGCCCAATATCCCTTTTT+TGG | + | chr5.4:3006644-3006663 | MS.gene058107:intron | 45.0% |
| !!! | AATTTTACATATTTTTTAAA+TGG | + | chr5.4:3005834-3005853 | MS.gene058107:intron | 5.0% |
| AAAGGGATATTGGGCCCGTT+TGG | - | chr5.4:3006754-3006773 | None:intergenic | 50.0% | |
| AATGGAACAACTGCTGCTGG+AGG | + | chr5.4:3006016-3006035 | MS.gene058107:CDS | 50.0% | |
| ACAACCAAGGCTCTGCAAGT+AGG | - | chr5.4:3005986-3006005 | None:intergenic | 50.0% | |
| ACAATGCAGTGACCATCGCA+AGG | - | chr5.4:3004360-3004379 | None:intergenic | 50.0% | |
| ACAGAATCTGCAGAGCACAG+AGG | + | chr5.4:3007756-3007775 | MS.gene058107:CDS | 50.0% | |
| ACTCACGCATTGAGCTCTTC+AGG | - | chr5.4:3005762-3005781 | None:intergenic | 50.0% | |
| ACTGGTAGATTCAGCAACCG+GGG | - | chr5.4:3007378-3007397 | None:intergenic | 50.0% | |
| AGCTCCCGTATTAGGTGCAA+GGG | - | chr5.4:3005642-3005661 | None:intergenic | 50.0% | |
| AGGCAAGCTTAGCCCTTCTT+CGG | + | chr5.4:3007822-3007841 | MS.gene058107:CDS | 50.0% | |
| AGTACAGGTCAAACCGAGCT+TGG | + | chr5.4:3006270-3006289 | MS.gene058107:CDS | 50.0% | |
| AGTGCAGCAAGTCCCTAACA+AGG | - | chr5.4:3005287-3005306 | None:intergenic | 50.0% | |
| CAACCAAGGCTCTGCAAGTA+GGG | - | chr5.4:3005985-3006004 | None:intergenic | 50.0% | |
| CACTGGTAGATTCAGCAACC+GGG | - | chr5.4:3007379-3007398 | None:intergenic | 50.0% | |
| CAGCAGGCATCACAATCAGA+TGG | + | chr5.4:3006040-3006059 | MS.gene058107:CDS | 50.0% | |
| CGTACAAAAGAAGTTGCGGG+AGG | - | chr5.4:3006390-3006409 | None:intergenic | 50.0% | |
| CTCACGCATTGAGCTCTTCA+GGG | - | chr5.4:3005761-3005780 | None:intergenic | 50.0% | |
| GATATTGGGCCCGTTTGGAT+TGG | - | chr5.4:3006749-3006768 | None:intergenic | 50.0% | |
| GCAATCATGGAGGGAGGTTA+TGG | + | chr5.4:3004285-3004304 | MS.gene058107:CDS | 50.0% | |
| GCACCATCATCAGAAAGCAG+AGG | + | chr5.4:3007802-3007821 | MS.gene058107:CDS | 50.0% | |
| GGCATTTATGCTCGGACGTT+GGG | + | chr5.4:3006414-3006433 | MS.gene058107:intron | 50.0% | |
| GGGGGATAATTAGTGTACCC+AGG | - | chr5.4:3007359-3007378 | None:intergenic | 50.0% | |
| GGGTACATTTATTGGCCCAC+CGG | - | chr5.4:3007459-3007478 | None:intergenic | 50.0% | |
| GGTACATTTATTGGCCCACC+GGG | - | chr5.4:3007458-3007477 | None:intergenic | 50.0% | |
| GTACATTTATTGGCCCACCG+GGG | - | chr5.4:3007457-3007476 | None:intergenic | 50.0% | |
| TAGCTCCCGTATTAGGTGCA+AGG | - | chr5.4:3005643-3005662 | None:intergenic | 50.0% | |
| TCACGCATTGAGCTCTTCAG+GGG | - | chr5.4:3005760-3005779 | None:intergenic | 50.0% | |
| ! | CACAAGGCTCTGGTATGAAC+AGG | - | chr5.4:3006872-3006891 | None:intergenic | 50.0% |
| ! | GAAGTGTCCTGTTGGAGGAA+AGG | - | chr5.4:3007480-3007499 | None:intergenic | 50.0% |
| !! | AGGCCAGTTTTATCCGGCAA+TGG | + | chr5.4:3004126-3004145 | MS.gene058107:CDS | 50.0% |
| AGCTCTTCAGGGGTTGCTTC+TGG | - | chr5.4:3005750-3005769 | None:intergenic | 55.0% | |
| CGGCATTTATGCTCGGACGT+TGG | + | chr5.4:3006413-3006432 | MS.gene058107:intron | 55.0% | |
| CTGGTAGATTCAGCAACCGG+GGG | - | chr5.4:3007377-3007396 | None:intergenic | 55.0% | |
| GAGGCCATGTATGGTTGGGA+AGG | - | chr5.4:3007512-3007531 | None:intergenic | 55.0% | |
| GCAAGTCCCTAACAAGGTCG+AGG | - | chr5.4:3005281-3005300 | None:intergenic | 55.0% | |
| GCTCTGGTATGAACAGGCCT+TGG | - | chr5.4:3006866-3006885 | None:intergenic | 55.0% | |
| GGGTAATCTTCGAGAGGCTG+AGG | + | chr5.4:3004246-3004265 | MS.gene058107:CDS | 55.0% | |
| GTCAAACCGAGCTTGGCAGT+GGG | + | chr5.4:3006277-3006296 | MS.gene058107:CDS | 55.0% | |
| GTCGCTCTAGCCATGATCGA+AGG | - | chr5.4:3005952-3005971 | None:intergenic | 55.0% | |
| TCAAACCGAGCTTGGCAGTG+GGG | + | chr5.4:3006278-3006297 | MS.gene058107:CDS | 55.0% | |
| TTCGAGAGGCTGAGGTTGAG+AGG | + | chr5.4:3004254-3004273 | MS.gene058107:CDS | 55.0% | |
| TTGCCCTACTTGCAGAGCCT+TGG | + | chr5.4:3005979-3005998 | MS.gene058107:CDS | 55.0% | |
| AACTGCTGCTGGAGGTCAGC+AGG | + | chr5.4:3006024-3006043 | MS.gene058107:CDS | 60.0% | |
| AAGCTGCAGCAGCAGCTGCT+TGG | - | chr5.4:3006341-3006360 | None:intergenic | 60.0% | |
| GGTCAAACCGAGCTTGGCAG+TGG | + | chr5.4:3006276-3006295 | MS.gene058107:CDS | 60.0% | |
| ! | GCTCGGACGTTGGGCCATTT+TGG | + | chr5.4:3006423-3006442 | MS.gene058107:intron | 60.0% |
| !! | GGGACAGGCACTGGAAGTAC+AGG | + | chr5.4:3006255-3006274 | MS.gene058107:intron | 60.0% |
| AACCGAGCTTGGCAGTGGGG+CGG | + | chr5.4:3006281-3006300 | MS.gene058107:CDS | 65.0% | |
| TGCCGCCCCACTGCCAAGCT+CGG | - | chr5.4:3006286-3006305 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 3004049 | 3007867 | 3004049 | ID=MS.gene058107 |
| chr5.4 | mRNA | 3004049 | 3007867 | 3004049 | ID=MS.gene058107.t1;Parent=MS.gene058107 |
| chr5.4 | exon | 3004049 | 3004581 | 3004049 | ID=MS.gene058107.t1.exon1;Parent=MS.gene058107.t1 |
| chr5.4 | CDS | 3004049 | 3004581 | 3004049 | ID=cds.MS.gene058107.t1;Parent=MS.gene058107.t1 |
| chr5.4 | exon | 3005167 | 3005343 | 3005167 | ID=MS.gene058107.t1.exon2;Parent=MS.gene058107.t1 |
| chr5.4 | CDS | 3005167 | 3005343 | 3005167 | ID=cds.MS.gene058107.t1;Parent=MS.gene058107.t1 |
| chr5.4 | exon | 3005626 | 3005775 | 3005626 | ID=MS.gene058107.t1.exon3;Parent=MS.gene058107.t1 |
| chr5.4 | CDS | 3005626 | 3005775 | 3005626 | ID=cds.MS.gene058107.t1;Parent=MS.gene058107.t1 |
| chr5.4 | exon | 3005865 | 3006073 | 3005865 | ID=MS.gene058107.t1.exon4;Parent=MS.gene058107.t1 |
| chr5.4 | CDS | 3005865 | 3006073 | 3005865 | ID=cds.MS.gene058107.t1;Parent=MS.gene058107.t1 |
| chr5.4 | exon | 3006262 | 3006409 | 3006262 | ID=MS.gene058107.t1.exon5;Parent=MS.gene058107.t1 |
| chr5.4 | CDS | 3006262 | 3006409 | 3006262 | ID=cds.MS.gene058107.t1;Parent=MS.gene058107.t1 |
| chr5.4 | exon | 3007352 | 3007622 | 3007352 | ID=MS.gene058107.t1.exon6;Parent=MS.gene058107.t1 |
| chr5.4 | CDS | 3007352 | 3007622 | 3007352 | ID=cds.MS.gene058107.t1;Parent=MS.gene058107.t1 |
| chr5.4 | exon | 3007739 | 3007867 | 3007739 | ID=MS.gene058107.t1.exon7;Parent=MS.gene058107.t1 |
| chr5.4 | CDS | 3007739 | 3007867 | 3007739 | ID=cds.MS.gene058107.t1;Parent=MS.gene058107.t1 |
| Gene Sequence |
| Protein sequence |
