Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058565.t1 | XP_003630990.1 | 96.1 | 311 | 12 | 0 | 1 | 311 | 1 | 311 | 3.30E-155 | 557.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058565.t1 | Q9LFD5 | 44.7 | 262 | 138 | 3 | 29 | 290 | 3 | 257 | 1.3e-43 | 178.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058565.t1 | G7LBH9 | 96.1 | 311 | 12 | 0 | 1 | 311 | 1 | 311 | 2.4e-155 | 557.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene058565 | MS.gene79606 | PPI |
| MS.gene058565 | MS.gene043248 | PPI |
| MS.gene058565 | MS.gene021689 | PPI |
| MS.gene058565 | MS.gene92820 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058565.t1 | MTR_8g105910 | 96.141 | 311 | 12 | 0 | 1 | 311 | 1 | 311 | 0.0 | 604 |
| MS.gene058565.t1 | MTR_1g032860 | 66.124 | 307 | 102 | 2 | 1 | 307 | 1 | 305 | 1.14e-140 | 400 |
| MS.gene058565.t1 | MTR_8g066460 | 53.333 | 270 | 116 | 2 | 31 | 290 | 3 | 272 | 3.60e-93 | 278 |
| MS.gene058565.t1 | MTR_8g066460 | 53.333 | 270 | 116 | 2 | 31 | 290 | 19 | 288 | 7.64e-93 | 278 |
| MS.gene058565.t1 | MTR_5g029640 | 58.607 | 244 | 97 | 1 | 31 | 270 | 3 | 246 | 6.92e-90 | 276 |
| MS.gene058565.t1 | MTR_5g029640 | 57.823 | 147 | 62 | 0 | 124 | 270 | 272 | 418 | 3.09e-46 | 162 |
| MS.gene058565.t1 | MTR_7g086080 | 40.964 | 249 | 129 | 3 | 32 | 262 | 4 | 252 | 1.73e-62 | 199 |
| MS.gene058565.t1 | MTR_5g039130 | 38.115 | 244 | 128 | 3 | 27 | 251 | 3 | 242 | 1.46e-45 | 155 |
| MS.gene058565.t1 | MTR_7g010100 | 34.818 | 247 | 129 | 6 | 33 | 251 | 7 | 249 | 2.25e-31 | 118 |
| MS.gene058565.t1 | MTR_5g038107 | 63.333 | 60 | 22 | 0 | 31 | 90 | 3 | 62 | 2.23e-19 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058565.t1 | AT1G67950 | 54.182 | 275 | 106 | 3 | 1 | 270 | 1 | 260 | 6.62e-95 | 282 |
| MS.gene058565.t1 | AT4G17720 | 57.037 | 270 | 102 | 5 | 33 | 295 | 5 | 267 | 8.15e-95 | 283 |
| MS.gene058565.t1 | AT1G67950 | 54.717 | 265 | 105 | 2 | 6 | 270 | 12 | 261 | 1.78e-94 | 281 |
| MS.gene058565.t1 | AT1G67950 | 54.348 | 276 | 105 | 4 | 1 | 270 | 1 | 261 | 9.87e-94 | 279 |
| MS.gene058565.t1 | AT5G46870 | 57.500 | 240 | 92 | 1 | 33 | 262 | 5 | 244 | 4.07e-88 | 266 |
| MS.gene058565.t1 | AT5G46870 | 57.500 | 240 | 92 | 1 | 33 | 262 | 5 | 244 | 4.07e-88 | 266 |
| MS.gene058565.t1 | AT5G16840 | 54.741 | 232 | 102 | 2 | 29 | 260 | 3 | 231 | 4.64e-81 | 246 |
| MS.gene058565.t1 | AT5G16840 | 54.741 | 232 | 101 | 2 | 29 | 260 | 3 | 230 | 1.99e-80 | 244 |
| MS.gene058565.t1 | AT5G16840 | 54.783 | 230 | 100 | 2 | 31 | 260 | 3 | 228 | 8.94e-80 | 243 |
| MS.gene058565.t1 | AT1G67950 | 54.808 | 208 | 87 | 1 | 63 | 270 | 1 | 201 | 4.13e-73 | 224 |
| MS.gene058565.t1 | AT5G32450 | 44.400 | 250 | 120 | 2 | 32 | 262 | 5 | 254 | 5.48e-67 | 211 |
| MS.gene058565.t1 | AT1G14340 | 37.021 | 235 | 129 | 3 | 34 | 253 | 9 | 239 | 1.67e-41 | 144 |
| MS.gene058565.t1 | AT3G01210 | 33.478 | 230 | 125 | 5 | 35 | 241 | 9 | 233 | 3.19e-26 | 104 |
| MS.gene058565.t1 | AT3G01210 | 33.478 | 230 | 125 | 5 | 35 | 241 | 9 | 233 | 3.19e-26 | 104 |
Find 59 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCCCTGTGTATTCTTAA+AGG | 0.217148 | 4.4:+1732932 | None:intergenic |
| CTCCAACCCCATGATCTTTA+TGG | 0.245719 | 4.4:+1733678 | None:intergenic |
| GGACTAAATGGTTGAGCTTC+AGG | 0.256983 | 4.4:+1732685 | None:intergenic |
| CCTGATTTAACAGGATCTTT+TGG | 0.271247 | 4.4:+1731853 | None:intergenic |
| GAGACGTTAATTGTCCAATT+TGG | 0.274907 | 4.4:+1733632 | None:intergenic |
| AATCTACACTTACACCAAAT+TGG | 0.291881 | 4.4:-1733646 | MS.gene058565:CDS |
| CAGCAGCAGGAGTCTGCTTT+TGG | 0.298826 | 4.4:+1732382 | None:intergenic |
| ATGGCGTTCGTCAAAGGATT+TGG | 0.339452 | 4.4:+1732284 | None:intergenic |
| TCAGGTGATGATAGTAGGTT+TGG | 0.364482 | 4.4:-1731835 | MS.gene058565:CDS |
| CTATCATCACCTGATTTAAC+AGG | 0.366026 | 4.4:+1731844 | None:intergenic |
| TAGGTGCTTACAGGACTAAA+TGG | 0.367374 | 4.4:+1732673 | None:intergenic |
| ATTTGGTGTAAGTGTAGATT+GGG | 0.391613 | 4.4:+1733649 | None:intergenic |
| GCTTCCATCGACCGTAAAAT+CGG | 0.392626 | 4.4:-1732231 | MS.gene058565:CDS |
| CCAAAAGATCCTGTTAAATC+AGG | 0.398256 | 4.4:-1731853 | MS.gene058565:CDS |
| AAACTCTTTGATATCCTTCT+CGG | 0.411550 | 4.4:+1733136 | None:intergenic |
| TTAAATCAGGTGATGATAGT+AGG | 0.425617 | 4.4:-1731840 | MS.gene058565:CDS |
| TTGACTGATAAACTAAGTAT+TGG | 0.438409 | 4.4:-1732207 | MS.gene058565:CDS |
| GAGCAAAAGGCAAGTGATGC+TGG | 0.451069 | 4.4:-1732099 | MS.gene058565:CDS |
| AATTTGGTGTAAGTGTAGAT+TGG | 0.458473 | 4.4:+1733648 | None:intergenic |
| AGCAATCCTTATGTATCAAC+CGG | 0.460676 | 4.4:-1732063 | MS.gene058565:CDS |
| TCAAATGGCGTGATGGTGAC+AGG | 0.461655 | 4.4:+1732724 | None:intergenic |
| TCAGCCTTCTTAACAGCAGC+AGG | 0.470780 | 4.4:+1732369 | None:intergenic |
| GACCATGGAGAAGGTCGAAA+TGG | 0.472925 | 4.4:-1731977 | MS.gene058565:CDS |
| GACTAAATGGTTGAGCTTCA+GGG | 0.476963 | 4.4:+1732686 | None:intergenic |
| ATGTATCAACCGGAGCTTCG+TGG | 0.477069 | 4.4:-1732053 | MS.gene058565:CDS |
| AAGAGATCATTTACAGTGAA+AGG | 0.479981 | 4.4:-1731939 | MS.gene058565:CDS |
| AACAAAACCTTTGGCAAGCA+TGG | 0.482332 | 4.4:+1732332 | None:intergenic |
| ACAGTGGACCATAAAGATCA+TGG | 0.486568 | 4.4:-1733686 | MS.gene058565:CDS |
| GACTCCTGCTGCTGTTAAGA+AGG | 0.488682 | 4.4:-1732373 | MS.gene058565:CDS |
| CAGGTGATGATAGTAGGTTT+GGG | 0.497873 | 4.4:-1731834 | MS.gene058565:CDS |
| TTATGCTGTTGCTGAGCAAA+AGG | 0.504065 | 4.4:-1732112 | MS.gene058565:CDS |
| CAAGTGATGGCGTTCGTCAA+AGG | 0.508940 | 4.4:+1732278 | None:intergenic |
| GACAGGAGAATTTGCTATGT+TGG | 0.511315 | 4.4:+1732741 | None:intergenic |
| ACTAAATGGTTGAGCTTCAG+GGG | 0.517698 | 4.4:+1732687 | None:intergenic |
| GACCATAAAGATCATGGGGT+TGG | 0.525650 | 4.4:-1733680 | MS.gene058565:CDS |
| GAAGCTCCGGTTGATACATA+AGG | 0.526434 | 4.4:+1732057 | None:intergenic |
| ACTCGACACCCACGAAGCTC+CGG | 0.531604 | 4.4:+1732044 | None:intergenic |
| GGCCATTTCGACCTTCTCCA+TGG | 0.533969 | 4.4:+1731975 | None:intergenic |
| CAGTGGACCATAAAGATCAT+GGG | 0.538044 | 4.4:-1733685 | MS.gene058565:CDS |
| TGTATCAACCGGAGCTTCGT+GGG | 0.542390 | 4.4:-1732052 | MS.gene058565:CDS |
| CACTCTGAGAAACCTTCAGT+TGG | 0.554582 | 4.4:-1731886 | MS.gene058565:CDS |
| AGACACAGCGGTGCTCTTGA+CGG | 0.555982 | 4.4:-1732910 | MS.gene058565:intron |
| GACCTTCTCCATGGTCATTG+TGG | 0.556836 | 4.4:+1731984 | None:intergenic |
| GGAGAAGTACTTCCAACTGA+AGG | 0.564400 | 4.4:+1731874 | None:intergenic |
| GGAGAAGGTCGAAATGGCCG+AGG | 0.599248 | 4.4:-1731971 | MS.gene058565:CDS |
| TTATTATATGCAGGTTACAG+TGG | 0.600019 | 4.4:-1733702 | MS.gene058565:intron |
| GTGAGCACCATGCTTGCCAA+AGG | 0.609575 | 4.4:-1732339 | MS.gene058565:CDS |
| ATCAATGACTGCGACCGAGA+AGG | 0.612115 | 4.4:-1733150 | MS.gene058565:CDS |
| GATCTCTTTCTTATCAACCT+CGG | 0.612294 | 4.4:+1731954 | None:intergenic |
| AAGCATTTGAAATCAAGTGA+TGG | 0.615986 | 4.4:+1732265 | None:intergenic |
| TGTTACCTTTAAGAATACAC+AGG | 0.630422 | 4.4:-1732937 | MS.gene058565:CDS |
| ACGGTCGATGGAAGCAACTG+TGG | 0.631720 | 4.4:+1732239 | None:intergenic |
| AACCACAATGACCATGGAGA+AGG | 0.639861 | 4.4:-1731986 | MS.gene058565:CDS |
| AGATGTAACCACAATGACCA+TGG | 0.653319 | 4.4:-1731992 | MS.gene058565:CDS |
| TTTGGTGTAAGTGTAGATTG+GGG | 0.666674 | 4.4:+1733650 | None:intergenic |
| AGTGGACCATAAAGATCATG+GGG | 0.671720 | 4.4:-1733684 | MS.gene058565:CDS |
| GTTACCTTTAAGAATACACA+GGG | 0.687476 | 4.4:-1732936 | MS.gene058565:CDS |
| CTAAATGGTTGAGCTTCAGG+GGG | 0.692728 | 4.4:+1732688 | None:intergenic |
| TACACAGGGAGCAGACACAG+CGG | 0.763107 | 4.4:-1732922 | MS.gene058565:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAAATAAAATATATGAAT+TGG | - | chr4.4:1732442-1732461 | MS.gene058565:intron | 10.0% |
| !! | TATACATCTTATAAATTTAT+CGG | + | chr4.4:1733498-1733517 | None:intergenic | 10.0% |
| !!! | CAGATTATTATTATTATTTT+TGG | - | chr4.4:1733217-1733236 | MS.gene058565:intron | 10.0% |
| !! | ATTAAAATGGAAGGAAAAAA+AGG | + | chr4.4:1732975-1732994 | None:intergenic | 20.0% |
| !! | ATTACAAAACATAGATTGAA+TGG | + | chr4.4:1732067-1732086 | None:intergenic | 20.0% |
| !! | TAATAACTAGATCCATATAT+AGG | + | chr4.4:1731908-1731927 | None:intergenic | 20.0% |
| !!! | AGAAGTTCATATTTTAATCA+AGG | + | chr4.4:1732246-1732265 | None:intergenic | 20.0% |
| !!! | AGATATAAGATTTGTTTTGA+AGG | + | chr4.4:1732712-1732731 | None:intergenic | 20.0% |
| !!! | AGCATTTTATTATTATATGC+AGG | - | chr4.4:1732311-1732330 | MS.gene058565:CDS | 20.0% |
| !!! | TTTTTATGTGTTCCTATATA+TGG | - | chr4.4:1731893-1731912 | MS.gene058565:CDS | 20.0% |
| ! | AGGTAAAAATGAATCAACTT+AGG | + | chr4.4:1732819-1732838 | None:intergenic | 25.0% |
| ! | ATAAATCCATAAATGCATAG+TGG | - | chr4.4:1732594-1732613 | MS.gene058565:intron | 25.0% |
| ! | GAACAGATAAAAACTAACTT+AGG | + | chr4.4:1733371-1733390 | None:intergenic | 25.0% |
| ! | TAATTCGATACTGGTATTAT+AGG | + | chr4.4:1733400-1733419 | None:intergenic | 25.0% |
| ! | TCACAAATTGATGAATATCA+GGG | - | chr4.4:1732172-1732191 | MS.gene058565:CDS | 25.0% |
| ! | TTCACAAATTGATGAATATC+AGG | - | chr4.4:1732171-1732190 | MS.gene058565:CDS | 25.0% |
| ! | TTGACTGATAAACTAAGTAT+TGG | - | chr4.4:1733815-1733834 | MS.gene058565:intron | 25.0% |
| !! | ATTTTCACAATTCACTTACA+TGG | - | chr4.4:1733023-1733042 | MS.gene058565:intron | 25.0% |
| !! | TTTTCCTAAAACAAAACCTT+TGG | + | chr4.4:1733702-1733721 | None:intergenic | 25.0% |
| !!! | AAAGGTTTTGTTTTAGGAAA+AGG | - | chr4.4:1733701-1733720 | MS.gene058565:intron | 25.0% |
| !!! | ACTGCAATTTTGTTTACTTT+TGG | - | chr4.4:1732681-1732700 | MS.gene058565:intron | 25.0% |
| AAACTCTTTGATATCCTTCT+CGG | + | chr4.4:1732889-1732908 | None:intergenic | 30.0% | |
| AAATATGGTGATCCCTAATA+AGG | - | chr4.4:1732097-1732116 | MS.gene058565:CDS | 30.0% | |
| AAATGAAAAAGTGAGAGAGA+TGG | - | chr4.4:1733850-1733869 | MS.gene058565:intron | 30.0% | |
| AAGAGATCATTTACAGTGAA+AGG | - | chr4.4:1734083-1734102 | MS.gene058565:intron | 30.0% | |
| AATACCAACACATGACAATA+AGG | + | chr4.4:1732736-1732755 | None:intergenic | 30.0% | |
| AATCTACACTTACACCAAAT+TGG | - | chr4.4:1732376-1732395 | MS.gene058565:CDS | 30.0% | |
| AGAGATGGATGAAAAATTTC+AGG | - | chr4.4:1733865-1733884 | MS.gene058565:intron | 30.0% | |
| AGCAATGACACTCATTAAAA+TGG | + | chr4.4:1732988-1733007 | None:intergenic | 30.0% | |
| ATATTTATATTGCAGTGTCC+AGG | + | chr4.4:1732497-1732516 | None:intergenic | 30.0% | |
| ATGACACTCATTAAAATGGA+AGG | + | chr4.4:1732984-1733003 | None:intergenic | 30.0% | |
| ATGCTTCTCTTTATAGTACA+GGG | - | chr4.4:1733256-1733275 | MS.gene058565:intron | 30.0% | |
| CATAGATTGAATGGTATACA+CGG | + | chr4.4:1732058-1732077 | None:intergenic | 30.0% | |
| CTAGAGTGAAAACATGATAT+TGG | + | chr4.4:1732471-1732490 | None:intergenic | 30.0% | |
| GTATGACTCATTTATTTAGC+AGG | - | chr4.4:1733448-1733467 | MS.gene058565:intron | 30.0% | |
| TTAAATCAGGTGATGATAGT+AGG | - | chr4.4:1734182-1734201 | MS.gene058565:intron | 30.0% | |
| TTATCTTAGCAGTAAAAGTG+TGG | - | chr4.4:1733417-1733436 | MS.gene058565:intron | 30.0% | |
| TTATTATATGCAGGTTACAG+TGG | - | chr4.4:1732320-1732339 | MS.gene058565:CDS | 30.0% | |
| TTGAATCCACTATGCATTTA+TGG | + | chr4.4:1732603-1732622 | None:intergenic | 30.0% | |
| ! | AAAGAGTTTTTCTCATTCTC+TGG | - | chr4.4:1732900-1732919 | MS.gene058565:intron | 30.0% |
| ! | AAGCATTTGAAATCAAGTGA+TGG | + | chr4.4:1733760-1733779 | None:intergenic | 30.0% |
| ! | ATAATTTTCAAATGGCGTGA+TGG | + | chr4.4:1733308-1733327 | None:intergenic | 30.0% |
| ! | GGAAGCTGATAATTTTCAAA+TGG | + | chr4.4:1733316-1733335 | None:intergenic | 30.0% |
| ! | GTTACCTTTAAGAATACACA+GGG | - | chr4.4:1733086-1733105 | MS.gene058565:intron | 30.0% |
| ! | TGTTACCTTTAAGAATACAC+AGG | - | chr4.4:1733085-1733104 | MS.gene058565:intron | 30.0% |
| ! | TTTTCTGATTATGTTGTAGC+AGG | + | chr4.4:1732525-1732544 | None:intergenic | 30.0% |
| !! | AATGCATAGTGGATTCAAAT+TGG | - | chr4.4:1732605-1732624 | MS.gene058565:intron | 30.0% |
| !! | AATTTGGTGTAAGTGTAGAT+TGG | + | chr4.4:1732377-1732396 | None:intergenic | 30.0% |
| !! | AGTTGATTCATTTTTACCTC+TGG | - | chr4.4:1732820-1732839 | MS.gene058565:intron | 30.0% |
| !! | ATGCATAGTGGATTCAAATT+GGG | - | chr4.4:1732606-1732625 | MS.gene058565:intron | 30.0% |
| !! | ATTTGGTGTAAGTGTAGATT+GGG | + | chr4.4:1732376-1732395 | None:intergenic | 30.0% |
| !! | TATCAGTCAAACCGATTTTA+CGG | + | chr4.4:1733805-1733824 | None:intergenic | 30.0% |
| !!! | ACTTACATGGAATTTTTTGC+AGG | - | chr4.4:1733036-1733055 | MS.gene058565:intron | 30.0% |
| !!! | CTTACATGGAATTTTTTGCA+GGG | - | chr4.4:1733037-1733056 | MS.gene058565:intron | 30.0% |
| AAAAAAAGGATTGCATTGCG+AGG | + | chr4.4:1732961-1732980 | None:intergenic | 35.0% | |
| AAACTAACTTAGGTGCTTAC+AGG | + | chr4.4:1733361-1733380 | None:intergenic | 35.0% | |
| AGCAATCCTTATGTATCAAC+CGG | - | chr4.4:1733959-1733978 | MS.gene058565:intron | 35.0% | |
| CACTACAATTACAAACACAG+TGG | + | chr4.4:1732198-1732217 | None:intergenic | 35.0% | |
| CATGCTTCTCTTTATAGTAC+AGG | - | chr4.4:1733255-1733274 | MS.gene058565:intron | 35.0% | |
| CCAAAAGATCCTGTTAAATC+AGG | - | chr4.4:1734169-1734188 | MS.gene058565:intron | 35.0% | |
| CTATCATCACCTGATTTAAC+AGG | + | chr4.4:1734181-1734200 | None:intergenic | 35.0% | |
| CTGCTAAGATAATTCGATAC+TGG | + | chr4.4:1733409-1733428 | None:intergenic | 35.0% | |
| GAGACGTTAATTGTCCAATT+TGG | + | chr4.4:1732393-1732412 | None:intergenic | 35.0% | |
| GATCTCTTTCTTATCAACCT+CGG | + | chr4.4:1734071-1734090 | None:intergenic | 35.0% | |
| TAACCTTTGATGTTGATCTC+AGG | - | chr4.4:1733616-1733635 | MS.gene058565:intron | 35.0% | |
| TTACCTCTGGCAGATAAAAA+CGG | - | chr4.4:1732833-1732852 | MS.gene058565:intron | 35.0% | |
| ! | CCTGATTTAACAGGATCTTT+TGG | + | chr4.4:1734172-1734191 | None:intergenic | 35.0% |
| ! | TGATCCCTAATAAGGTTGAT+GGG | - | chr4.4:1732105-1732124 | MS.gene058565:CDS | 35.0% |
| ! | TTTGGTGTAAGTGTAGATTG+GGG | + | chr4.4:1732375-1732394 | None:intergenic | 35.0% |
| !!! | CTTGCCAAAGGTTTTGTTTT+AGG | - | chr4.4:1733695-1733714 | MS.gene058565:intron | 35.0% |
| AACAAAACCTTTGGCAAGCA+TGG | + | chr4.4:1733693-1733712 | None:intergenic | 40.0% | |
| ACAGTGGACCATAAAGATCA+TGG | - | chr4.4:1732336-1732355 | MS.gene058565:CDS | 40.0% | |
| ACTAAATGGTTGAGCTTCAG+GGG | + | chr4.4:1733338-1733357 | None:intergenic | 40.0% | |
| AGATGTAACCACAATGACCA+TGG | - | chr4.4:1734030-1734049 | MS.gene058565:intron | 40.0% | |
| AGATTGAATGGTATACACGG+AGG | + | chr4.4:1732055-1732074 | None:intergenic | 40.0% | |
| AGTGGACCATAAAGATCATG+GGG | - | chr4.4:1732338-1732357 | MS.gene058565:CDS | 40.0% | |
| CAGGTGATGATAGTAGGTTT+GGG | - | chr4.4:1734188-1734207 | MS.gene058565:intron | 40.0% | |
| CAGTGGACCATAAAGATCAT+GGG | - | chr4.4:1732337-1732356 | MS.gene058565:CDS | 40.0% | |
| CTGGCAGATAAAAACGGTTA+AGG | - | chr4.4:1732839-1732858 | MS.gene058565:intron | 40.0% | |
| GACTAAATGGTTGAGCTTCA+GGG | + | chr4.4:1733339-1733358 | None:intergenic | 40.0% | |
| GGTGCGTGAAAATACATCAA+TGG | - | chr4.4:1732139-1732158 | MS.gene058565:CDS | 40.0% | |
| GTGATCCCTAATAAGGTTGA+TGG | - | chr4.4:1732104-1732123 | MS.gene058565:CDS | 40.0% | |
| TAGGTGCTTACAGGACTAAA+TGG | + | chr4.4:1733352-1733371 | None:intergenic | 40.0% | |
| TCAGGTGATGATAGTAGGTT+TGG | - | chr4.4:1734187-1734206 | MS.gene058565:intron | 40.0% | |
| TGCTCCCTGTGTATTCTTAA+AGG | + | chr4.4:1733093-1733112 | None:intergenic | 40.0% | |
| TTATGCTGTTGCTGAGCAAA+AGG | - | chr4.4:1733910-1733929 | MS.gene058565:intron | 40.0% | |
| ! | ATGTTTTCACTCTAGATGCC+TGG | - | chr4.4:1732476-1732495 | MS.gene058565:intron | 40.0% |
| ! | TCTGCCTTATTGTCATGTGT+TGG | - | chr4.4:1732729-1732748 | MS.gene058565:CDS | 40.0% |
| !! | GACAGGAGAATTTGCTATGT+TGG | + | chr4.4:1733284-1733303 | None:intergenic | 40.0% |
| !! | TAACCGTTTTTATCTGCCAG+AGG | + | chr4.4:1732839-1732858 | None:intergenic | 40.0% |
| AACCACAATGACCATGGAGA+AGG | - | chr4.4:1734036-1734055 | MS.gene058565:intron | 45.0% | |
| ACCCTCCCATCAACCTTATT+AGG | + | chr4.4:1732113-1732132 | None:intergenic | 45.0% | |
| ATGGCGTTCGTCAAAGGATT+TGG | + | chr4.4:1733741-1733760 | None:intergenic | 45.0% | |
| CCCTCCCATCAACCTTATTA+GGG | + | chr4.4:1732112-1732131 | None:intergenic | 45.0% | |
| CTAAATGGTTGAGCTTCAGG+GGG | + | chr4.4:1733337-1733356 | None:intergenic | 45.0% | |
| CTCCAACCCCATGATCTTTA+TGG | + | chr4.4:1732347-1732366 | None:intergenic | 45.0% | |
| GACCATAAAGATCATGGGGT+TGG | - | chr4.4:1732342-1732361 | MS.gene058565:CDS | 45.0% | |
| GCTTCCATCGACCGTAAAAT+CGG | - | chr4.4:1733791-1733810 | MS.gene058565:intron | 45.0% | |
| GGACTAAATGGTTGAGCTTC+AGG | + | chr4.4:1733340-1733359 | None:intergenic | 45.0% | |
| GGTCCTGAGATCAACATCAA+AGG | + | chr4.4:1733622-1733641 | None:intergenic | 45.0% | |
| ! | CACTCTGAGAAACCTTCAGT+TGG | - | chr4.4:1734136-1734155 | MS.gene058565:intron | 45.0% |
| ! | GAAGCTCCGGTTGATACATA+AGG | + | chr4.4:1733968-1733987 | None:intergenic | 45.0% |
| !! | CAAACCGATTTTACGGTCGA+TGG | + | chr4.4:1733798-1733817 | None:intergenic | 45.0% |
| !! | CCCTAATAAGGTTGATGGGA+GGG | - | chr4.4:1732109-1732128 | MS.gene058565:CDS | 45.0% |
| !! | GGAGAAGTACTTCCAACTGA+AGG | + | chr4.4:1734151-1734170 | None:intergenic | 45.0% |
| !! | TCCCTAATAAGGTTGATGGG+AGG | - | chr4.4:1732108-1732127 | MS.gene058565:CDS | 45.0% |
| !! | GTAATAAATTAATATAAATA+TGG | - | chr4.4:1732082-1732101 | MS.gene058565:CDS | 5.0% |
| !! | TAAAATAAAATATATGAATT+GGG | - | chr4.4:1732443-1732462 | MS.gene058565:intron | 5.0% |
| ATCAATGACTGCGACCGAGA+AGG | - | chr4.4:1732872-1732891 | MS.gene058565:intron | 50.0% | |
| ATGTATCAACCGGAGCTTCG+TGG | - | chr4.4:1733969-1733988 | MS.gene058565:intron | 50.0% | |
| GACCATGGAGAAGGTCGAAA+TGG | - | chr4.4:1734045-1734064 | MS.gene058565:intron | 50.0% | |
| GACCTTCTCCATGGTCATTG+TGG | + | chr4.4:1734041-1734060 | None:intergenic | 50.0% | |
| GACTCCTGCTGCTGTTAAGA+AGG | - | chr4.4:1733649-1733668 | MS.gene058565:CDS | 50.0% | |
| GAGCAAAAGGCAAGTGATGC+TGG | - | chr4.4:1733923-1733942 | MS.gene058565:intron | 50.0% | |
| TCAGCCTTCTTAACAGCAGC+AGG | + | chr4.4:1733656-1733675 | None:intergenic | 50.0% | |
| TGTATCAACCGGAGCTTCGT+GGG | - | chr4.4:1733970-1733989 | MS.gene058565:intron | 50.0% | |
| ! | CAAGTGATGGCGTTCGTCAA+AGG | + | chr4.4:1733747-1733766 | None:intergenic | 50.0% |
| ! | TCAAATGGCGTGATGGTGAC+AGG | + | chr4.4:1733301-1733320 | None:intergenic | 50.0% |
| !! | GGTTGATGGGAGGGTGAAAT+TGG | - | chr4.4:1732118-1732137 | MS.gene058565:CDS | 50.0% |
| ACGGTCGATGGAAGCAACTG+TGG | + | chr4.4:1733786-1733805 | None:intergenic | 55.0% | |
| AGACACAGCGGTGCTCTTGA+CGG | - | chr4.4:1733112-1733131 | MS.gene058565:CDS | 55.0% | |
| GGCCATTTCGACCTTCTCCA+TGG | + | chr4.4:1734050-1734069 | None:intergenic | 55.0% | |
| GTGAGCACCATGCTTGCCAA+AGG | - | chr4.4:1733683-1733702 | MS.gene058565:CDS | 55.0% | |
| TACACAGGGAGCAGACACAG+CGG | - | chr4.4:1733100-1733119 | MS.gene058565:CDS | 55.0% | |
| ! | CAGCAGCAGGAGTCTGCTTT+TGG | + | chr4.4:1733643-1733662 | None:intergenic | 55.0% |
| ACTCGACACCCACGAAGCTC+CGG | + | chr4.4:1733981-1734000 | None:intergenic | 60.0% | |
| CAGCGGTGCTCTTGACGGTA+TGG | - | chr4.4:1733117-1733136 | MS.gene058565:CDS | 60.0% | |
| GGAGAAGGTCGAAATGGCCG+AGG | - | chr4.4:1734051-1734070 | MS.gene058565:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 1731825 | 1734219 | 1731825 | ID=MS.gene058565 |
| chr4.4 | mRNA | 1731825 | 1734219 | 1731825 | ID=MS.gene058565.t1;Parent=MS.gene058565 |
| chr4.4 | exon | 1734214 | 1734219 | 1734214 | ID=MS.gene058565.t1.exon1;Parent=MS.gene058565.t1 |
| chr4.4 | CDS | 1734214 | 1734219 | 1734214 | ID=cds.MS.gene058565.t1;Parent=MS.gene058565.t1 |
| chr4.4 | exon | 1733628 | 1733711 | 1733628 | ID=MS.gene058565.t1.exon2;Parent=MS.gene058565.t1 |
| chr4.4 | CDS | 1733628 | 1733711 | 1733628 | ID=cds.MS.gene058565.t1;Parent=MS.gene058565.t1 |
| chr4.4 | exon | 1733095 | 1733198 | 1733095 | ID=MS.gene058565.t1.exon3;Parent=MS.gene058565.t1 |
| chr4.4 | CDS | 1733095 | 1733198 | 1733095 | ID=cds.MS.gene058565.t1;Parent=MS.gene058565.t1 |
| chr4.4 | exon | 1732911 | 1732986 | 1732911 | ID=MS.gene058565.t1.exon4;Parent=MS.gene058565.t1 |
| chr4.4 | CDS | 1732911 | 1732986 | 1732911 | ID=cds.MS.gene058565.t1;Parent=MS.gene058565.t1 |
| chr4.4 | exon | 1732684 | 1732767 | 1732684 | ID=MS.gene058565.t1.exon5;Parent=MS.gene058565.t1 |
| chr4.4 | CDS | 1732684 | 1732767 | 1732684 | ID=cds.MS.gene058565.t1;Parent=MS.gene058565.t1 |
| chr4.4 | exon | 1731825 | 1732406 | 1731825 | ID=MS.gene058565.t1.exon6;Parent=MS.gene058565.t1 |
| chr4.4 | CDS | 1731825 | 1732406 | 1731825 | ID=cds.MS.gene058565.t1;Parent=MS.gene058565.t1 |
| Gene Sequence |
| Protein sequence |
