Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058590.t1 | XP_003630977.1 | 97.7 | 218 | 5 | 0 | 1 | 218 | 636 | 853 | 5.00E-118 | 433.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058590.t1 | Q94AH8 | 78.8 | 217 | 44 | 1 | 1 | 215 | 641 | 857 | 5.4e-97 | 355.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058590.t1 | G7LBG6 | 97.7 | 218 | 5 | 0 | 1 | 218 | 636 | 853 | 3.6e-118 | 433.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058590 | MS.gene24923 | 0.806801 | 6.90E-50 | -1.69E-46 |
| MS.gene058590 | MS.gene64517 | 0.81034 | 1.21E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058590.t1 | MTR_8g105740 | 97.706 | 218 | 5 | 0 | 1 | 218 | 636 | 853 | 1.00e-151 | 442 |
| MS.gene058590.t1 | MTR_1g032730 | 84.475 | 219 | 31 | 2 | 1 | 217 | 637 | 854 | 4.48e-129 | 384 |
| MS.gene058590.t1 | MTR_1g109620 | 70.892 | 213 | 62 | 0 | 2 | 214 | 631 | 843 | 3.09e-103 | 317 |
| MS.gene058590.t1 | MTR_8g063790 | 63.889 | 216 | 76 | 1 | 1 | 214 | 624 | 839 | 2.72e-92 | 288 |
| MS.gene058590.t1 | MTR_4g080160 | 63.721 | 215 | 76 | 1 | 1 | 213 | 635 | 849 | 1.75e-91 | 286 |
| MS.gene058590.t1 | MTR_4g129270 | 57.277 | 213 | 89 | 1 | 2 | 214 | 630 | 840 | 1.41e-81 | 259 |
| MS.gene058590.t1 | MTR_3g078210 | 50.246 | 203 | 99 | 1 | 2 | 202 | 550 | 752 | 3.76e-57 | 193 |
| MS.gene058590.t1 | MTR_4g129270 | 59.677 | 124 | 50 | 0 | 2 | 125 | 630 | 753 | 8.16e-45 | 159 |
| MS.gene058590.t1 | MTR_8g087930 | 35.196 | 179 | 108 | 7 | 22 | 193 | 254 | 431 | 6.44e-22 | 93.6 |
| MS.gene058590.t1 | MTR_2g073260 | 34.302 | 172 | 104 | 7 | 2 | 166 | 668 | 837 | 4.40e-20 | 88.6 |
| MS.gene058590.t1 | MTR_0034s0170 | 34.807 | 181 | 108 | 9 | 2 | 174 | 629 | 807 | 1.12e-18 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058590.t1 | AT1G68020 | 78.802 | 217 | 44 | 1 | 1 | 215 | 641 | 857 | 3.57e-120 | 361 |
| MS.gene058590.t1 | AT1G68020 | 78.802 | 217 | 44 | 1 | 1 | 215 | 641 | 857 | 3.57e-120 | 361 |
| MS.gene058590.t1 | AT4G17770 | 68.636 | 220 | 63 | 2 | 1 | 214 | 630 | 849 | 6.12e-104 | 319 |
| MS.gene058590.t1 | AT4G17770 | 68.636 | 220 | 63 | 2 | 1 | 214 | 630 | 849 | 6.12e-104 | 319 |
| MS.gene058590.t1 | AT1G60140 | 62.441 | 213 | 78 | 1 | 2 | 212 | 631 | 843 | 3.42e-92 | 288 |
| MS.gene058590.t1 | AT1G60140 | 62.441 | 213 | 78 | 1 | 2 | 212 | 631 | 843 | 3.42e-92 | 288 |
| MS.gene058590.t1 | AT1G60140 | 62.441 | 213 | 78 | 1 | 2 | 212 | 631 | 843 | 3.42e-92 | 288 |
| MS.gene058590.t1 | AT1G60140 | 62.441 | 213 | 78 | 1 | 2 | 212 | 631 | 843 | 3.42e-92 | 288 |
| MS.gene058590.t1 | AT1G60140 | 62.441 | 213 | 78 | 1 | 2 | 212 | 631 | 843 | 3.42e-92 | 288 |
| MS.gene058590.t1 | AT1G70290 | 62.857 | 210 | 76 | 1 | 2 | 209 | 588 | 797 | 2.61e-91 | 285 |
| MS.gene058590.t1 | AT1G70290 | 62.857 | 210 | 76 | 1 | 2 | 209 | 626 | 835 | 8.87e-91 | 284 |
| MS.gene058590.t1 | AT1G23870 | 60.563 | 213 | 82 | 1 | 2 | 212 | 631 | 843 | 3.68e-88 | 278 |
| MS.gene058590.t1 | AT1G06410 | 62.212 | 217 | 74 | 2 | 2 | 213 | 625 | 838 | 7.76e-87 | 274 |
| MS.gene058590.t1 | AT1G06410 | 62.212 | 217 | 74 | 2 | 2 | 213 | 625 | 838 | 7.76e-87 | 274 |
| MS.gene058590.t1 | AT1G06410 | 62.212 | 217 | 74 | 2 | 2 | 213 | 625 | 838 | 7.76e-87 | 274 |
| MS.gene058590.t1 | AT2G18700 | 58.605 | 215 | 87 | 2 | 1 | 213 | 622 | 836 | 1.01e-80 | 258 |
| MS.gene058590.t1 | AT1G60140 | 64.516 | 124 | 44 | 0 | 2 | 125 | 631 | 754 | 2.80e-52 | 179 |
| MS.gene058590.t1 | AT4G27550 | 31.535 | 241 | 130 | 9 | 4 | 214 | 550 | 785 | 1.40e-25 | 104 |
| MS.gene058590.t1 | AT4G27550 | 31.535 | 241 | 130 | 9 | 4 | 214 | 559 | 794 | 1.51e-25 | 104 |
| MS.gene058590.t1 | AT1G16980 | 31.556 | 225 | 139 | 9 | 2 | 213 | 554 | 776 | 8.51e-23 | 96.3 |
| MS.gene058590.t1 | AT1G78580 | 35.556 | 180 | 108 | 7 | 2 | 175 | 640 | 817 | 8.78e-22 | 93.6 |
| MS.gene058590.t1 | AT1G78580 | 35.556 | 180 | 108 | 7 | 2 | 175 | 640 | 817 | 8.78e-22 | 93.6 |
| MS.gene058590.t1 | AT1G78580 | 35.556 | 180 | 108 | 7 | 2 | 175 | 640 | 817 | 8.78e-22 | 93.6 |
| MS.gene058590.t1 | AT1G78580 | 35.556 | 180 | 108 | 7 | 2 | 175 | 640 | 817 | 8.78e-22 | 93.6 |
| MS.gene058590.t1 | AT1G68020 | 59.574 | 47 | 19 | 0 | 1 | 47 | 641 | 687 | 1.29e-11 | 63.9 |
Find 55 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGATGCAGATCCTGATTT+TGG | 0.213425 | 4.4:-1463705 | MS.gene058590:CDS |
| CAAGTAGTACTTGGCCTTGC+TGG | 0.213909 | 4.4:+1462696 | None:intergenic |
| AAGCCACTCTTCACTGTTAC+TGG | 0.259229 | 4.4:+1463627 | None:intergenic |
| AACCATTCAGTAAGCGCCTT+TGG | 0.320767 | 4.4:+1464206 | None:intergenic |
| GTGCCTAAGATAAAACTATT+TGG | 0.324753 | 4.4:+1462620 | None:intergenic |
| CCTGAATTTGTTCTGTGTAT+TGG | 0.331756 | 4.4:-1462820 | MS.gene058590:CDS |
| CTGGTCCTTCCATGGCTCCT+AGG | 0.341786 | 4.4:-1462753 | MS.gene058590:CDS |
| TTTGAGGTCATCACTAGTTC+TGG | 0.342484 | 4.4:-1462772 | MS.gene058590:CDS |
| GCTTGGCATGATCCAAAATC+AGG | 0.379292 | 4.4:+1463693 | None:intergenic |
| ACCATTCAGTAAGCGCCTTT+GGG | 0.381194 | 4.4:+1464207 | None:intergenic |
| CCAATACACAGAACAAATTC+AGG | 0.383583 | 4.4:+1462820 | None:intergenic |
| CGTGGATCCATCTGTTGTTT+CGG | 0.388253 | 4.4:+1463764 | None:intergenic |
| AAGTAGTACTTGGCCTTGCT+GGG | 0.418154 | 4.4:+1462697 | None:intergenic |
| ATAAGGAGACAGCACTTGTT+TGG | 0.418945 | 4.4:-1463734 | MS.gene058590:CDS |
| TGTGGCTAAGCGCCTACTTT+CGG | 0.436353 | 4.4:-1462866 | MS.gene058590:CDS |
| CTGCACCATTCTCACTATAT+CGG | 0.436393 | 4.4:+1462663 | None:intergenic |
| ACTTTCGGCCATGCAAGAAA+AGG | 0.456881 | 4.4:-1462851 | MS.gene058590:CDS |
| AACTATTTGGTCTGAAACAC+AGG | 0.458415 | 4.4:+1462633 | None:intergenic |
| CAGCAAGGCCAAGTACTACT+TGG | 0.472261 | 4.4:-1462695 | MS.gene058590:CDS |
| CACTAGTTCTGGTCCTTCCA+TGG | 0.474911 | 4.4:-1462761 | MS.gene058590:CDS |
| CGATATAGTGAGAATGGTGC+AGG | 0.476585 | 4.4:-1462662 | MS.gene058590:CDS |
| GCCCAAAGGCGCTTACTGAA+TGG | 0.479407 | 4.4:-1464208 | MS.gene058590:CDS |
| TGGTCCTTCCATGGCTCCTA+GGG | 0.485852 | 4.4:-1462752 | MS.gene058590:CDS |
| TGGATCCACGATTGAAGATA+AGG | 0.486239 | 4.4:-1463751 | MS.gene058590:CDS |
| GATTAAGAAGTTCTTTAGCT+TGG | 0.493640 | 4.4:+1463676 | None:intergenic |
| ACTGAAGCGGGATGCAGAAT+GGG | 0.500849 | 4.4:-1463853 | MS.gene058590:CDS |
| GACTGAAGCGGGATGCAGAA+TGG | 0.505794 | 4.4:-1463854 | MS.gene058590:CDS |
| TACTTCAGCCCTAGGAGCCA+TGG | 0.509397 | 4.4:+1462744 | None:intergenic |
| CTTTCGGCCATGCAAGAAAA+GGG | 0.511483 | 4.4:-1462850 | MS.gene058590:CDS |
| TTTCTTGCATGGCCGAAAGT+AGG | 0.524999 | 4.4:+1462854 | None:intergenic |
| CACCTGTAGCAGACTTCAGT+TGG | 0.526677 | 4.4:-1463821 | MS.gene058590:CDS |
| TTCCAACTGAAGTCTGCTAC+AGG | 0.529777 | 4.4:+1463819 | None:intergenic |
| ATCTGATGAAGACATGTTTG+AGG | 0.533716 | 4.4:-1462788 | MS.gene058590:CDS |
| CATGCAAATACTTCAGCCCT+AGG | 0.534052 | 4.4:+1462736 | None:intergenic |
| GAAGTATTTGCATGCACTGT+TGG | 0.540517 | 4.4:-1462727 | MS.gene058590:CDS |
| ACACATGCAGGGTGTGAACA+AGG | 0.548293 | 4.4:-1462893 | MS.gene058590:intron |
| CATGCTCAGCAGCAATCCCC+AGG | 0.562276 | 4.4:+1464168 | None:intergenic |
| TTTCTCCTTGCGAAAACCTG+GGG | 0.562838 | 4.4:-1464184 | MS.gene058590:CDS |
| AGCACTTGTTTGGTGCTATG+AGG | 0.563118 | 4.4:-1463724 | MS.gene058590:CDS |
| CTGGGGATTGCTGCTGAGCA+TGG | 0.565464 | 4.4:-1464167 | MS.gene058590:CDS |
| AGTGTCATCCAAGTAGTACT+TGG | 0.566276 | 4.4:+1462687 | None:intergenic |
| CACTGCCGATATAGTGAGAA+TGG | 0.566955 | 4.4:-1462668 | MS.gene058590:CDS |
| TCGGTATAAAGCTTCATCAC+AGG | 0.570527 | 4.4:+1463783 | None:intergenic |
| TAATGTGGAGGTTAAACCAC+AGG | 0.590016 | 4.4:-1463601 | MS.gene058590:intron |
| CTTTATACCGAAACAACAGA+TGG | 0.617139 | 4.4:-1463771 | MS.gene058590:CDS |
| CACATGCAGGGTGTGAACAA+GGG | 0.617510 | 4.4:-1462892 | MS.gene058590:intron |
| GGGTGTGAACAAGGGACTTG+TGG | 0.642436 | 4.4:-1462884 | MS.gene058590:CDS |
| TGTTGGTCGAAAACCCAGCA+AGG | 0.667193 | 4.4:-1462710 | MS.gene058590:CDS |
| TCAGCCCTAGGAGCCATGGA+AGG | 0.671674 | 4.4:+1462748 | None:intergenic |
| GAAGAGTGGCTTGAATAATG+TGG | 0.677280 | 4.4:-1463616 | MS.gene058590:CDS |
| GAACCAGTAACAGTGAAGAG+TGG | 0.680785 | 4.4:-1463630 | MS.gene058590:CDS |
| TGTCTCCTTATCTTCAATCG+TGG | 0.682762 | 4.4:+1463746 | None:intergenic |
| AGTAAGTGCTAAAAGCCCAA+AGG | 0.683853 | 4.4:-1464222 | MS.gene058590:CDS |
| GATATAGTGAGAATGGTGCA+GGG | 0.698860 | 4.4:-1462661 | MS.gene058590:CDS |
| GAGTGGCTTGAATAATGTGG+AGG | 0.723673 | 4.4:-1463613 | MS.gene058590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAATGAATATAAACTATAA+AGG | - | chr4.4:1463783-1463802 | MS.gene058590:CDS | 15.0% |
| !! | TATTAAAAATCTTTGATAGA+TGG | - | chr4.4:1463560-1463579 | MS.gene058590:intron | 15.0% |
| !!! | ACTTTTTAAGGTAAATTATT+TGG | - | chr4.4:1462715-1462734 | MS.gene058590:CDS | 15.0% |
| !!! | ATATTCATTCTTTTACTAAA+AGG | + | chr4.4:1463774-1463793 | None:intergenic | 15.0% |
| !!! | CTTTTTAAGGTAAATTATTT+GGG | - | chr4.4:1462716-1462735 | MS.gene058590:CDS | 15.0% |
| !!! | TTTTTAAGGTAAATTATTTG+GGG | - | chr4.4:1462717-1462736 | MS.gene058590:CDS | 15.0% |
| !! | ATAAACTATAAAGGTAACTT+AGG | - | chr4.4:1463792-1463811 | MS.gene058590:CDS | 20.0% |
| !! | CATGTTTAATATTATGTCAA+GGG | - | chr4.4:1463524-1463543 | MS.gene058590:intron | 20.0% |
| !! | TAAACTATAAAGGTAACTTA+GGG | - | chr4.4:1463793-1463812 | MS.gene058590:CDS | 20.0% |
| !! | TATATAATCACTTTCTGTAA+TGG | + | chr4.4:1463824-1463843 | None:intergenic | 20.0% |
| !! | TCATGTTTAATATTATGTCA+AGG | - | chr4.4:1463523-1463542 | MS.gene058590:intron | 20.0% |
| !!! | ATGATAAATTTTCTGTCTAT+TGG | - | chr4.4:1463318-1463337 | MS.gene058590:intron | 20.0% |
| ! | AAAAGGAAAAGATTGAATCA+AGG | + | chr4.4:1463757-1463776 | None:intergenic | 25.0% |
| ! | AATAGCTGTTAAATTGAGAT+CGG | + | chr4.4:1462887-1462906 | None:intergenic | 25.0% |
| ! | ATACATATATATACACATGC+AGG | - | chr4.4:1463952-1463971 | MS.gene058590:intron | 25.0% |
| ! | GTTAGATTATAACTTACAGT+TGG | - | chr4.4:1462966-1462985 | MS.gene058590:intron | 25.0% |
| ! | TACATATATATACACATGCA+GGG | - | chr4.4:1463953-1463972 | MS.gene058590:intron | 25.0% |
| ! | TGTATATGAATATGCATTAG+AGG | + | chr4.4:1463937-1463956 | None:intergenic | 25.0% |
| AAAACAAAGTTCCTTTACTG+TGG | - | chr4.4:1463433-1463452 | MS.gene058590:intron | 30.0% | |
| ATCATTTCTCAAACACAACA+AGG | + | chr4.4:1463876-1463895 | None:intergenic | 30.0% | |
| GATTAAGAAGTTCTTTAGCT+TGG | + | chr4.4:1463184-1463203 | None:intergenic | 30.0% | |
| TGTTTGAGAAATGATAAGCT+TGG | - | chr4.4:1463881-1463900 | MS.gene058590:intron | 30.0% | |
| ! | ATTTTCTGTCTATTGGATTC+TGG | - | chr4.4:1463325-1463344 | MS.gene058590:intron | 30.0% |
| ! | TTTTAAACTCTAAACTACCG+AGG | + | chr4.4:1462844-1462863 | None:intergenic | 30.0% |
| !! | AGAAGTATCAAACCATGAAA+AGG | + | chr4.4:1462946-1462965 | None:intergenic | 30.0% |
| !! | CTTATGACATTTTCAGGATT+TGG | - | chr4.4:1462740-1462759 | MS.gene058590:CDS | 30.0% |
| ATCTGATGAAGACATGTTTG+AGG | - | chr4.4:1464069-1464088 | MS.gene058590:intron | 35.0% | |
| CCAATACACAGAACAAATTC+AGG | + | chr4.4:1464040-1464059 | None:intergenic | 35.0% | |
| CTTTATACCGAAACAACAGA+TGG | - | chr4.4:1463086-1463105 | MS.gene058590:intron | 35.0% | |
| GGTTTGCAAATTCACATAGT+CGG | + | chr4.4:1462916-1462935 | None:intergenic | 35.0% | |
| GTGACTGTTAGATGAAAGAT+CGG | - | chr4.4:1462802-1462821 | MS.gene058590:CDS | 35.0% | |
| TAACTTACAGTTGGCATGTA+TGG | - | chr4.4:1462975-1462994 | MS.gene058590:intron | 35.0% | |
| ! | AAACCATGAAAAGGTGTATC+AGG | + | chr4.4:1462937-1462956 | None:intergenic | 35.0% |
| ! | AAACCTGATACACCTTTTCA+TGG | - | chr4.4:1462931-1462950 | MS.gene058590:intron | 35.0% |
| ! | AACTATTTGGTCTGAAACAC+AGG | + | chr4.4:1464227-1464246 | None:intergenic | 35.0% |
| ! | AGATGGAAGCATGTAACTTA+GGG | - | chr4.4:1463577-1463596 | MS.gene058590:intron | 35.0% |
| ! | CCTGAATTTGTTCTGTGTAT+TGG | - | chr4.4:1464037-1464056 | MS.gene058590:intron | 35.0% |
| ! | TAGATGGAAGCATGTAACTT+AGG | - | chr4.4:1463576-1463595 | MS.gene058590:intron | 35.0% |
| !!! | CTGAGCATGGTTACTTTTTA+AGG | - | chr4.4:1462703-1462722 | MS.gene058590:CDS | 35.0% |
| !!! | TGTATGGTTTTAGACTGAAG+CGG | - | chr4.4:1462991-1463010 | MS.gene058590:intron | 35.0% |
| AAGCCAGTGTAAGATTGAAC+TGG | + | chr4.4:1463709-1463728 | None:intergenic | 40.0% | |
| ACAAATGTTATACGCACCTG+TGG | + | chr4.4:1463275-1463294 | None:intergenic | 40.0% | |
| ACTTACGATGAAGATACAGC+AGG | - | chr4.4:1463460-1463479 | MS.gene058590:intron | 40.0% | |
| AGCCAGTGTAAGATTGAACT+GGG | + | chr4.4:1463708-1463727 | None:intergenic | 40.0% | |
| AGTAAGTGCTAAAAGCCCAA+AGG | - | chr4.4:1462635-1462654 | MS.gene058590:CDS | 40.0% | |
| AGTGTCATCCAAGTAGTACT+TGG | + | chr4.4:1464173-1464192 | None:intergenic | 40.0% | |
| ATAAGGAGACAGCACTTGTT+TGG | - | chr4.4:1463123-1463142 | MS.gene058590:intron | 40.0% | |
| ATCTCATGCAATCATCGCAT+CGG | - | chr4.4:1462780-1462799 | MS.gene058590:CDS | 40.0% | |
| CATGTAACTTAGGGTGCATT+TGG | - | chr4.4:1463586-1463605 | MS.gene058590:intron | 40.0% | |
| CGTAAGTCTAACCACAGTAA+AGG | + | chr4.4:1463447-1463466 | None:intergenic | 40.0% | |
| CTGCACCATTCTCACTATAT+CGG | + | chr4.4:1464197-1464216 | None:intergenic | 40.0% | |
| CTGTAAGACTGTAAGATGGT+TGG | + | chr4.4:1463914-1463933 | None:intergenic | 40.0% | |
| CTGTTAGATGAAAGATCGGA+CGG | - | chr4.4:1462806-1462825 | MS.gene058590:CDS | 40.0% | |
| CTTACGATGAAGATACAGCA+GGG | - | chr4.4:1463461-1463480 | MS.gene058590:intron | 40.0% | |
| GAAGAGTGGCTTGAATAATG+TGG | - | chr4.4:1463241-1463260 | MS.gene058590:intron | 40.0% | |
| GACGGTCTAAATTTCAACCT+CGG | - | chr4.4:1462824-1462843 | MS.gene058590:CDS | 40.0% | |
| GATATAGTGAGAATGGTGCA+GGG | - | chr4.4:1464196-1464215 | MS.gene058590:CDS | 40.0% | |
| GCTGTTAAATTGAGATCGGA+CGG | + | chr4.4:1462883-1462902 | None:intergenic | 40.0% | |
| TAATGTGGAGGTTAAACCAC+AGG | - | chr4.4:1463256-1463275 | MS.gene058590:intron | 40.0% | |
| TCGGTATAAAGCTTCATCAC+AGG | + | chr4.4:1463077-1463096 | None:intergenic | 40.0% | |
| TGGATCCACGATTGAAGATA+AGG | - | chr4.4:1463106-1463125 | MS.gene058590:intron | 40.0% | |
| TGTCTCCTTATCTTCAATCG+TGG | + | chr4.4:1463114-1463133 | None:intergenic | 40.0% | |
| ! | GAAGTATTTGCATGCACTGT+TGG | - | chr4.4:1464130-1464149 | MS.gene058590:intron | 40.0% |
| ! | TGACATTCCCTTTTCTTGCA+TGG | + | chr4.4:1464017-1464036 | None:intergenic | 40.0% |
| ! | TTGGGGCTTATGACATTTTC+AGG | - | chr4.4:1462734-1462753 | MS.gene058590:CDS | 40.0% |
| ! | TTTGAGGTCATCACTAGTTC+TGG | - | chr4.4:1464085-1464104 | MS.gene058590:intron | 40.0% |
| ! | TTTTCTCCTTGCGAAAACCT+GGG | - | chr4.4:1462672-1462691 | MS.gene058590:CDS | 40.0% |
| !!! | GTATGGTTTTAGACTGAAGC+GGG | - | chr4.4:1462992-1463011 | MS.gene058590:intron | 40.0% |
| AACCATTCAGTAAGCGCCTT+TGG | + | chr4.4:1462654-1462673 | None:intergenic | 45.0% | |
| AAGCCACTCTTCACTGTTAC+TGG | + | chr4.4:1463233-1463252 | None:intergenic | 45.0% | |
| ACCATTCAGTAAGCGCCTTT+GGG | + | chr4.4:1462653-1462672 | None:intergenic | 45.0% | |
| ACTTTCGGCCATGCAAGAAA+AGG | - | chr4.4:1464006-1464025 | MS.gene058590:intron | 45.0% | |
| AGGGCAAAAATGAGTTCGGA+TGG | - | chr4.4:1463480-1463499 | MS.gene058590:intron | 45.0% | |
| CACTGCCGATATAGTGAGAA+TGG | - | chr4.4:1464189-1464208 | MS.gene058590:CDS | 45.0% | |
| CAGCAGGGCAAAAATGAGTT+CGG | - | chr4.4:1463476-1463495 | MS.gene058590:intron | 45.0% | |
| CATGCAAATACTTCAGCCCT+AGG | + | chr4.4:1464124-1464143 | None:intergenic | 45.0% | |
| CCAGTGTAAGATTGAACTGG+GGG | + | chr4.4:1463706-1463725 | None:intergenic | 45.0% | |
| CGATATAGTGAGAATGGTGC+AGG | - | chr4.4:1464195-1464214 | MS.gene058590:CDS | 45.0% | |
| CTTTCGGCCATGCAAGAAAA+GGG | - | chr4.4:1464007-1464026 | MS.gene058590:intron | 45.0% | |
| GAACCAGTAACAGTGAAGAG+TGG | - | chr4.4:1463227-1463246 | MS.gene058590:intron | 45.0% | |
| GAGGCTGTAAGACTGTAAGA+TGG | + | chr4.4:1463918-1463937 | None:intergenic | 45.0% | |
| GAGTGGCTTGAATAATGTGG+AGG | - | chr4.4:1463244-1463263 | MS.gene058590:intron | 45.0% | |
| GCCAGTGTAAGATTGAACTG+GGG | + | chr4.4:1463707-1463726 | None:intergenic | 45.0% | |
| GCTTGGCATGATCCAAAATC+AGG | + | chr4.4:1463167-1463186 | None:intergenic | 45.0% | |
| TTCCAACTGAAGTCTGCTAC+AGG | + | chr4.4:1463041-1463060 | None:intergenic | 45.0% | |
| TTTCTCCTTGCGAAAACCTG+GGG | - | chr4.4:1462673-1462692 | MS.gene058590:CDS | 45.0% | |
| TTTCTTGCATGGCCGAAAGT+AGG | + | chr4.4:1464006-1464025 | None:intergenic | 45.0% | |
| ! | CGTGGATCCATCTGTTGTTT+CGG | + | chr4.4:1463096-1463115 | None:intergenic | 45.0% |
| ! | GAGGATGCAGATCCTGATTT+TGG | - | chr4.4:1463152-1463171 | MS.gene058590:intron | 45.0% |
| ! | GTTTTCTCCTTGCGAAAACC+TGG | - | chr4.4:1462671-1462690 | MS.gene058590:CDS | 45.0% |
| !! | AAGTAGTACTTGGCCTTGCT+GGG | + | chr4.4:1464163-1464182 | None:intergenic | 45.0% |
| !! | AGCACTTGTTTGGTGCTATG+AGG | - | chr4.4:1463133-1463152 | MS.gene058590:intron | 45.0% |
| ACACATGCAGGGTGTGAACA+AGG | - | chr4.4:1463964-1463983 | MS.gene058590:intron | 50.0% | |
| ACTGAAGCGGGATGCAGAAT+GGG | - | chr4.4:1463004-1463023 | MS.gene058590:intron | 50.0% | |
| CACATGCAGGGTGTGAACAA+GGG | - | chr4.4:1463965-1463984 | MS.gene058590:intron | 50.0% | |
| CACCTGTAGCAGACTTCAGT+TGG | - | chr4.4:1463036-1463055 | MS.gene058590:intron | 50.0% | |
| CAGCAAGGCCAAGTACTACT+TGG | - | chr4.4:1464162-1464181 | MS.gene058590:CDS | 50.0% | |
| CCCCCAGTTCAATCTTACAC+TGG | - | chr4.4:1463703-1463722 | MS.gene058590:CDS | 50.0% | |
| TGTGGCTAAGCGCCTACTTT+CGG | - | chr4.4:1463991-1464010 | MS.gene058590:intron | 50.0% | |
| TGTTGGTCGAAAACCCAGCA+AGG | - | chr4.4:1464147-1464166 | MS.gene058590:intron | 50.0% | |
| !! | CAAGTAGTACTTGGCCTTGC+TGG | + | chr4.4:1464164-1464183 | None:intergenic | 50.0% |
| !! | CACTAGTTCTGGTCCTTCCA+TGG | - | chr4.4:1464096-1464115 | MS.gene058590:intron | 50.0% |
| GACTGAAGCGGGATGCAGAA+TGG | - | chr4.4:1463003-1463022 | MS.gene058590:intron | 55.0% | |
| GGGTGTGAACAAGGGACTTG+TGG | - | chr4.4:1463973-1463992 | MS.gene058590:intron | 55.0% | |
| TACTTCAGCCCTAGGAGCCA+TGG | + | chr4.4:1464116-1464135 | None:intergenic | 55.0% | |
| TGGTCCTTCCATGGCTCCTA+GGG | - | chr4.4:1464105-1464124 | MS.gene058590:intron | 55.0% | |
| ! | GCAATCCCCAGGTTTTCGCA+AGG | + | chr4.4:1462681-1462700 | None:intergenic | 55.0% |
| !! | GCCCAAAGGCGCTTACTGAA+TGG | - | chr4.4:1462649-1462668 | MS.gene058590:CDS | 55.0% |
| CATGCTCAGCAGCAATCCCC+AGG | + | chr4.4:1462692-1462711 | None:intergenic | 60.0% | |
| CTGGGGATTGCTGCTGAGCA+TGG | - | chr4.4:1462690-1462709 | MS.gene058590:CDS | 60.0% | |
| CTGGTCCTTCCATGGCTCCT+AGG | - | chr4.4:1464104-1464123 | MS.gene058590:intron | 60.0% | |
| TCAGCCCTAGGAGCCATGGA+AGG | + | chr4.4:1464112-1464131 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 1462624 | 1464255 | 1462624 | ID=MS.gene058590 |
| chr4.4 | mRNA | 1462624 | 1464255 | 1462624 | ID=MS.gene058590.t1;Parent=MS.gene058590 |
| chr4.4 | exon | 1464155 | 1464255 | 1464155 | ID=MS.gene058590.t1.exon1;Parent=MS.gene058590.t1 |
| chr4.4 | CDS | 1464155 | 1464255 | 1464155 | ID=cds.MS.gene058590.t1;Parent=MS.gene058590.t1 |
| chr4.4 | exon | 1463602 | 1463875 | 1463602 | ID=MS.gene058590.t1.exon2;Parent=MS.gene058590.t1 |
| chr4.4 | CDS | 1463602 | 1463875 | 1463602 | ID=cds.MS.gene058590.t1;Parent=MS.gene058590.t1 |
| chr4.4 | exon | 1462624 | 1462905 | 1462624 | ID=MS.gene058590.t1.exon3;Parent=MS.gene058590.t1 |
| chr4.4 | CDS | 1462624 | 1462905 | 1462624 | ID=cds.MS.gene058590.t1;Parent=MS.gene058590.t1 |
| Gene Sequence |
| Protein sequence |
