Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058799.t1 | XP_003598073.1 | 92.3 | 117 | 8 | 1 | 24 | 140 | 267 | 382 | 8.00E-53 | 216.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058799.t1 | A1RYE4 | 42.9 | 84 | 48 | 0 | 36 | 119 | 221 | 304 | 4.8e-14 | 79.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058799.t1 | G7J081 | 92.3 | 117 | 8 | 1 | 24 | 140 | 267 | 382 | 5.8e-53 | 216.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058798 | MS.gene058799 | 0.86068 | 1.75E-63 | -1.69E-46 |
| MS.gene058799 | MS.gene06684 | -0.803824 | 2.90E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058799.t1 | MTR_3g005970 | 92.308 | 117 | 8 | 1 | 24 | 140 | 267 | 382 | 1.93e-71 | 219 |
| MS.gene058799.t1 | MTR_8g033400 | 34.483 | 116 | 73 | 2 | 5 | 120 | 203 | 315 | 6.03e-13 | 64.7 |
| MS.gene058799.t1 | MTR_8g033410 | 31.783 | 129 | 85 | 2 | 5 | 133 | 196 | 321 | 7.15e-13 | 64.3 |
| MS.gene058799.t1 | MTR_4g005880 | 33.333 | 90 | 60 | 0 | 36 | 125 | 298 | 387 | 2.50e-12 | 63.2 |
| MS.gene058799.t1 | MTR_6g007170 | 39.560 | 91 | 53 | 2 | 35 | 124 | 271 | 360 | 3.50e-12 | 62.8 |
| MS.gene058799.t1 | MTR_6g007175 | 38.462 | 91 | 54 | 2 | 35 | 124 | 221 | 310 | 2.72e-11 | 60.1 |
| MS.gene058799.t1 | MTR_8g033390 | 30.909 | 110 | 73 | 2 | 24 | 133 | 212 | 318 | 4.16e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058799.t1 | AT1G72190 | 64.748 | 139 | 47 | 1 | 4 | 140 | 235 | 373 | 1.88e-55 | 177 |
| MS.gene058799.t1 | AT5G14780 | 35.922 | 103 | 64 | 2 | 30 | 131 | 264 | 365 | 9.02e-13 | 64.3 |
| MS.gene058799.t1 | AT5G14780 | 35.922 | 103 | 64 | 2 | 30 | 131 | 238 | 339 | 9.62e-13 | 64.3 |
| MS.gene058799.t1 | AT2G45630 | 31.818 | 110 | 72 | 2 | 24 | 133 | 227 | 333 | 9.63e-13 | 64.3 |
| MS.gene058799.t1 | AT5G14780 | 35.922 | 103 | 64 | 2 | 30 | 131 | 250 | 351 | 1.19e-12 | 63.9 |
| MS.gene058799.t1 | AT1G17745 | 32.584 | 89 | 60 | 0 | 36 | 124 | 319 | 407 | 5.49e-12 | 62.4 |
| MS.gene058799.t1 | AT1G17745 | 32.584 | 89 | 60 | 0 | 36 | 124 | 292 | 380 | 5.67e-12 | 62.4 |
Find 37 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTATCGGTGATACTTTATT+TGG | 0.071786 | 3.3:+1698119 | MS.gene058799:CDS |
| CTTCATTTCTTCCATGAAAA+AGG | 0.182361 | 3.3:+1699662 | MS.gene058799:CDS |
| TTTATTTCAGGGTGCCCTTC+TGG | 0.268864 | 3.3:+1700549 | MS.gene058799:intron |
| AAATTTCAATATCTGATCAT+TGG | 0.336562 | 3.3:-1700683 | None:intergenic |
| TCCAAGCTTCCTTTGCTGTA+TGG | 0.363828 | 3.3:-1698093 | None:intergenic |
| CTATCGGTGATACTTTATTT+GGG | 0.376577 | 3.3:+1698120 | MS.gene058799:CDS |
| AATTTCAATATCTGATCATT+GGG | 0.380747 | 3.3:-1700682 | None:intergenic |
| ATGTGCTTCTAGGCTGTGTC+TGG | 0.393294 | 3.3:+1698523 | MS.gene058799:intron |
| CTCCTAAGTGTCCGGATTCA+AGG | 0.399021 | 3.3:-1700621 | None:intergenic |
| ATCATGACTCCTCATATTGC+AGG | 0.400259 | 3.3:+1700715 | MS.gene058799:CDS |
| ATCTGATCATTGGGATCAAA+TGG | 0.411289 | 3.3:-1700673 | None:intergenic |
| AACCTTAGCCATGGATCTAT+AGG | 0.450234 | 3.3:-1700752 | None:intergenic |
| TCCATACAGCAAAGGAAGCT+TGG | 0.462894 | 3.3:+1698092 | MS.gene058799:CDS |
| TCCTAGCCCTCCTAAGTGTC+CGG | 0.468903 | 3.3:-1700629 | None:intergenic |
| CATGCTGGAAATCCTTTGAC+AGG | 0.473055 | 3.3:+1700983 | MS.gene058799:CDS |
| ACTATAGGTTGTTGGTGATG+TGG | 0.525653 | 3.3:+1700949 | MS.gene058799:intron |
| GTGGTTCTTCAACTTCATGC+TGG | 0.529637 | 3.3:+1700968 | MS.gene058799:CDS |
| AACCTTGAATCCGGACACTT+AGG | 0.536199 | 3.3:+1700619 | MS.gene058799:CDS |
| GGCTAGGAACCGATGTTGCA+TGG | 0.544266 | 3.3:+1700644 | MS.gene058799:CDS |
| ACTAACTCAATTCCTGTCAA+AGG | 0.547459 | 3.3:-1700995 | None:intergenic |
| AGGAACCGATGTTGCATGGA+CGG | 0.557674 | 3.3:+1700648 | MS.gene058799:CDS |
| ACAGCCTCATAGTCTAAAAG+AGG | 0.560341 | 3.3:-1700589 | None:intergenic |
| CTCCTATAGATCCATGGCTA+AGG | 0.568330 | 3.3:+1700750 | MS.gene058799:CDS |
| CTTGAATCCGGACACTTAGG+AGG | 0.570448 | 3.3:+1700622 | MS.gene058799:CDS |
| CCAAATAAAGTATCACCGAT+AGG | 0.575385 | 3.3:-1698119 | None:intergenic |
| TCCGGACACTTAGGAGGGCT+AGG | 0.583295 | 3.3:+1700628 | MS.gene058799:CDS |
| CTTCTGGTTAATGTTGCTAG+AGG | 0.594373 | 3.3:+1700565 | MS.gene058799:CDS |
| CTCTAGCAACATTAACCAGA+AGG | 0.595259 | 3.3:-1700564 | None:intergenic |
| TGCAGATTTCCATACAGCAA+AGG | 0.595617 | 3.3:+1698084 | MS.gene058799:CDS |
| AGCCACACAAACCTTAGCCA+TGG | 0.596880 | 3.3:-1700761 | None:intergenic |
| CTTCTAGGCTGTGTCTGGAG+AGG | 0.597206 | 3.3:+1698528 | MS.gene058799:intron |
| AGGAAGCTTGGAGAGCCTAT+CGG | 0.606938 | 3.3:+1698104 | MS.gene058799:CDS |
| AGAACACTCCTATAGATCCA+TGG | 0.614020 | 3.3:+1700744 | MS.gene058799:CDS |
| TCTGTAACGCCTGCAATATG+AGG | 0.621540 | 3.3:-1700724 | None:intergenic |
| TGGCTCCGTCCATGCAACAT+CGG | 0.631902 | 3.3:-1700653 | None:intergenic |
| TTGAATCCGGACACTTAGGA+GGG | 0.659810 | 3.3:+1700623 | MS.gene058799:CDS |
| TCTAGCAACATTAACCAGAA+GGG | 0.669159 | 3.3:-1700563 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAAATAAGTAAATTTA+AGG | - | chr3.3:1699710-1699729 | None:intergenic | 10.0% |
| !! | AATGAAATAAGTAAATTTAA+GGG | - | chr3.3:1699709-1699728 | None:intergenic | 10.0% |
| !! | ATTTCAGTAAATATAAATAT+GGG | - | chr3.3:1698806-1698825 | None:intergenic | 10.0% |
| !! | TATTTCAGTAAATATAAATA+TGG | - | chr3.3:1698807-1698826 | None:intergenic | 10.0% |
| !!! | AAATATATATAGTTTACTTT+TGG | + | chr3.3:1698410-1698429 | MS.gene058799:intron | 10.0% |
| !!! | ATTTACTTATTTCATTTTTT+AGG | + | chr3.3:1699713-1699732 | MS.gene058799:intron | 10.0% |
| !!! | TAGAAATATAGATTTTATTT+CGG | - | chr3.3:1698297-1698316 | None:intergenic | 10.0% |
| !!! | TTTACTTATTTCATTTTTTA+GGG | + | chr3.3:1699714-1699733 | MS.gene058799:intron | 10.0% |
| !! | AAAACGAATAAATAAATGAT+TGG | - | chr3.3:1699458-1699477 | None:intergenic | 15.0% |
| !! | AATAGAAATAGAGAAAATAA+TGG | + | chr3.3:1699861-1699880 | MS.gene058799:intron | 15.0% |
| !! | ATGAAATAAGTAAATTTAAG+GGG | - | chr3.3:1699708-1699727 | None:intergenic | 15.0% |
| !! | TTATATTTACTGAAATAGAT+CGG | + | chr3.3:1698810-1698829 | MS.gene058799:intron | 15.0% |
| !!! | ATAATGTAGATATTCATTTT+GGG | + | chr3.3:1699104-1699123 | MS.gene058799:intron | 15.0% |
| !!! | GATTTTATTTTTTTATCAGT+AGG | + | chr3.3:1700319-1700338 | MS.gene058799:intron | 15.0% |
| !! | AAATTAAAATTAGTAGCCTA+AGG | + | chr3.3:1700110-1700129 | MS.gene058799:intron | 20.0% |
| !! | AAATTTCAATATCTGATCAT+TGG | - | chr3.3:1700686-1700705 | None:intergenic | 20.0% |
| !! | AATAATGTATAACTGGAATT+TGG | + | chr3.3:1700276-1700295 | MS.gene058799:intron | 20.0% |
| !! | AATTTCAATATCTGATCATT+GGG | - | chr3.3:1700685-1700704 | None:intergenic | 20.0% |
| !! | ACATAGAAATAATGTATAAC+TGG | + | chr3.3:1700269-1700288 | MS.gene058799:intron | 20.0% |
| !! | ATAATCAAAGAATAGTTCAT+AGG | - | chr3.3:1700021-1700040 | None:intergenic | 20.0% |
| !! | TAATCAAAGAATAGTTCATA+GGG | - | chr3.3:1700020-1700039 | None:intergenic | 20.0% |
| !!! | ATTTTAATTTCGTAGAGAAT+AGG | - | chr3.3:1700100-1700119 | None:intergenic | 20.0% |
| !!! | CATTTCTTGTTGTTTTATAT+AGG | + | chr3.3:1700427-1700446 | MS.gene058799:intron | 20.0% |
| !!! | GATAATGTAGATATTCATTT+TGG | + | chr3.3:1699103-1699122 | MS.gene058799:intron | 20.0% |
| !!! | TAATGTAGATATTCATTTTG+GGG | + | chr3.3:1699105-1699124 | MS.gene058799:intron | 20.0% |
| !!! | TCTATATTTCTACCTTAAAA+AGG | + | chr3.3:1698305-1698324 | MS.gene058799:intron | 20.0% |
| !!! | TTTTCATTACAATTTGCTTT+TGG | + | chr3.3:1699536-1699555 | MS.gene058799:intron | 20.0% |
| ! | ATCTCTAATAACAAGCAATT+AGG | + | chr3.3:1698680-1698699 | MS.gene058799:intron | 25.0% |
| ! | ATCTTTAACGATTGTTTCAA+CGG | - | chr3.3:1698980-1698999 | None:intergenic | 25.0% |
| ! | ATTTGCAAAAACTAAAACAG+TGG | + | chr3.3:1699061-1699080 | MS.gene058799:intron | 25.0% |
| ! | CTTAAACTTAAACAGTGAAA+CGG | + | chr3.3:1699421-1699440 | MS.gene058799:intron | 25.0% |
| ! | GTTATTGTTTAATATGCCAT+GGG | + | chr3.3:1698196-1698215 | MS.gene058799:intron | 25.0% |
| ! | TAAAAGTTATTGCTACAAAG+CGG | + | chr3.3:1699177-1699196 | MS.gene058799:intron | 25.0% |
| ! | TAAATTTAAGGGGTTAATCT+TGG | - | chr3.3:1699698-1699717 | None:intergenic | 25.0% |
| ! | TCATTAAGTAAACATAACCA+CGG | - | chr3.3:1699967-1699986 | None:intergenic | 25.0% |
| ! | TCTCTAATAACAAGCAATTA+GGG | + | chr3.3:1698681-1698700 | MS.gene058799:intron | 25.0% |
| ! | TGTTATTGTTTAATATGCCA+TGG | + | chr3.3:1698195-1698214 | MS.gene058799:intron | 25.0% |
| !! | ATAGACTTTTGATCAAGATA+AGG | + | chr3.3:1700226-1700245 | MS.gene058799:intron | 25.0% |
| !! | GTTGCATACATTGATTAAAA+TGG | + | chr3.3:1698255-1698274 | MS.gene058799:intron | 25.0% |
| !! | TAGACTTTTGATCAAGATAA+GGG | + | chr3.3:1700227-1700246 | MS.gene058799:intron | 25.0% |
| !! | TGTTTTATATAGGCTAGATT+GGG | + | chr3.3:1700437-1700456 | MS.gene058799:intron | 25.0% |
| !! | TTACGAATTCCTTTATTTCA+GGG | + | chr3.3:1700538-1700557 | MS.gene058799:intron | 25.0% |
| !! | TTCAATCAATTTTCACGAAA+CGG | - | chr3.3:1698442-1698461 | None:intergenic | 25.0% |
| !!! | ATCCAGGCAATAATTTTTTT+AGG | + | chr3.3:1698347-1698366 | MS.gene058799:intron | 25.0% |
| !!! | GTCTAAAAGTTTATTTTGCT+TGG | + | chr3.3:1700503-1700522 | MS.gene058799:intron | 25.0% |
| !!! | TAATTTTTTTAGGTGTCTGA+TGG | + | chr3.3:1698357-1698376 | MS.gene058799:intron | 25.0% |
| !!! | TTGTTTTATATAGGCTAGAT+TGG | + | chr3.3:1700436-1700455 | MS.gene058799:intron | 25.0% |
| AAAATTAAAGCAATGCTCAG+AGG | - | chr3.3:1698617-1698636 | None:intergenic | 30.0% | |
| ACAACCTATAGTAAAACAAC+AGG | - | chr3.3:1700941-1700960 | None:intergenic | 30.0% | |
| CACCTAAAAAAATTATTGCC+TGG | - | chr3.3:1698352-1698371 | None:intergenic | 30.0% | |
| CTTCATTTCTTCCATGAAAA+AGG | + | chr3.3:1699662-1699681 | MS.gene058799:CDS | 30.0% | |
| GAGTCAAACAAAACATTTGA+AGG | + | chr3.3:1698761-1698780 | MS.gene058799:intron | 30.0% | |
| TAAGCTCATAATGTATGTAC+AGG | + | chr3.3:1699741-1699760 | MS.gene058799:intron | 30.0% | |
| TAATGTATGTACAGGATGAT+AGG | + | chr3.3:1699749-1699768 | MS.gene058799:intron | 30.0% | |
| TCTTAGTTACTGAATCAACT+AGG | - | chr3.3:1698895-1698914 | None:intergenic | 30.0% | |
| TGTATGAGTGCTTAAAACTA+CGG | - | chr3.3:1700361-1700380 | None:intergenic | 30.0% | |
| TTTAACTGAAGAATGAGTTG+TGG | + | chr3.3:1699897-1699916 | MS.gene058799:intron | 30.0% | |
| TTTACAGATCCATATGATTC+TGG | - | chr3.3:1700806-1700825 | None:intergenic | 30.0% | |
| TTTGTTCCTAAAACACAGAA+TGG | - | chr3.3:1699842-1699861 | None:intergenic | 30.0% | |
| ! | CGATACAATTATGGTTAGTT+GGG | + | chr3.3:1698725-1698744 | MS.gene058799:intron | 30.0% |
| ! | CTATCGGTGATACTTTATTT+GGG | + | chr3.3:1698120-1698139 | MS.gene058799:CDS | 30.0% |
| ! | GCAATAACTTTTACACCAAA+TGG | - | chr3.3:1699170-1699189 | None:intergenic | 30.0% |
| ! | GTTACGAATTCCTTTATTTC+AGG | + | chr3.3:1700537-1700556 | MS.gene058799:intron | 30.0% |
| ! | GTTGATTCAGTAACTAAGAT+CGG | + | chr3.3:1698896-1698915 | MS.gene058799:intron | 30.0% |
| ! | GTTTTATATAGGCTAGATTG+GGG | + | chr3.3:1700438-1700457 | MS.gene058799:intron | 30.0% |
| ! | TCAATCAATTTTCACGAAAC+GGG | - | chr3.3:1698441-1698460 | None:intergenic | 30.0% |
| ! | TTTTATATAGGCTAGATTGG+GGG | + | chr3.3:1700439-1700458 | MS.gene058799:intron | 30.0% |
| !! | ACAAAAGCACTTTAAGCATA+GGG | - | chr3.3:1700845-1700864 | None:intergenic | 30.0% |
| !! | GTTGTTTTACTATAGGTTGT+TGG | + | chr3.3:1700941-1700960 | MS.gene058799:intron | 30.0% |
| !! | TACAAAAGCACTTTAAGCAT+AGG | - | chr3.3:1700846-1700865 | None:intergenic | 30.0% |
| !! | TTAACATGTAACTTGTTCCT+AGG | + | chr3.3:1698586-1698605 | MS.gene058799:intron | 30.0% |
| !!! | TAGATATTCATTTTGGGGTT+CGG | + | chr3.3:1699110-1699129 | MS.gene058799:intron | 30.0% |
| AAGTAACAGAAGTAGAAGCT+TGG | - | chr3.3:1699491-1699510 | None:intergenic | 35.0% | |
| ACTAACTCAATTCCTGTCAA+AGG | - | chr3.3:1700998-1701017 | None:intergenic | 35.0% | |
| ATAAACTAAGCCTAGTATGC+TGG | + | chr3.3:1699572-1699591 | MS.gene058799:intron | 35.0% | |
| ATCTGATCATTGGGATCAAA+TGG | - | chr3.3:1700676-1700695 | None:intergenic | 35.0% | |
| ATGATAAAAATCTGTCCTCC+TGG | + | chr3.3:1699921-1699940 | MS.gene058799:intron | 35.0% | |
| CCACTTATTCCAGAATCATA+TGG | + | chr3.3:1700794-1700813 | MS.gene058799:intron | 35.0% | |
| CCTATCGGTGATACTTTATT+TGG | + | chr3.3:1698119-1698138 | MS.gene058799:CDS | 35.0% | |
| GATGATCTTGTTGATGTGAA+GGG | + | chr3.3:1699344-1699363 | MS.gene058799:intron | 35.0% | |
| GCGATACAATTATGGTTAGT+TGG | + | chr3.3:1698724-1698743 | MS.gene058799:intron | 35.0% | |
| GTATGAGTGCTTAAAACTAC+GGG | - | chr3.3:1700360-1700379 | None:intergenic | 35.0% | |
| GTGTCTCTGTCTTTATTCTT+TGG | + | chr3.3:1699776-1699795 | MS.gene058799:intron | 35.0% | |
| TCTAGCAACATTAACCAGAA+GGG | - | chr3.3:1700566-1700585 | None:intergenic | 35.0% | |
| TGATAAAAATCTGTCCTCCT+GGG | + | chr3.3:1699922-1699941 | MS.gene058799:intron | 35.0% | |
| TGATGATCTTGTTGATGTGA+AGG | + | chr3.3:1699343-1699362 | MS.gene058799:intron | 35.0% | |
| TGTACTATTCATGTGCTTCT+AGG | + | chr3.3:1698513-1698532 | MS.gene058799:intron | 35.0% | |
| TTTAAGGGGTTAATCTTGGA+TGG | - | chr3.3:1699694-1699713 | None:intergenic | 35.0% | |
| ! | CCAAATAAAGTATCACCGAT+AGG | - | chr3.3:1698122-1698141 | None:intergenic | 35.0% |
| ! | CTTGGATATGATGTCTTTTC+AGG | + | chr3.3:1699620-1699639 | MS.gene058799:intron | 35.0% |
| ! | TACTTCTGTTACTTCTAGCT+AGG | + | chr3.3:1699497-1699516 | MS.gene058799:intron | 35.0% |
| ! | TGGTTAGTTGGGTTGTAAAT+AGG | + | chr3.3:1698736-1698755 | MS.gene058799:intron | 35.0% |
| !! | CCATATGATTCTGGAATAAG+TGG | - | chr3.3:1700797-1700816 | None:intergenic | 35.0% |
| !! | GATGGTACAAACCTTTTTCA+TGG | - | chr3.3:1699676-1699695 | None:intergenic | 35.0% |
| !!! | AGATATTCATTTTGGGGTTC+GGG | + | chr3.3:1699111-1699130 | MS.gene058799:intron | 35.0% |
| !!! | CTTGCCTGTTGTTTTACTAT+AGG | + | chr3.3:1700934-1700953 | MS.gene058799:intron | 35.0% |
| AAATGTCTGCGATCACTACT+GGG | - | chr3.3:1700412-1700431 | None:intergenic | 40.0% | |
| AACCTTAGCCATGGATCTAT+AGG | - | chr3.3:1700755-1700774 | None:intergenic | 40.0% | |
| AACGATTGTTTCAACGGAAC+AGG | - | chr3.3:1698974-1698993 | None:intergenic | 40.0% | |
| ACAGCCTCATAGTCTAAAAG+AGG | - | chr3.3:1700592-1700611 | None:intergenic | 40.0% | |
| AGAACACTCCTATAGATCCA+TGG | + | chr3.3:1700744-1700763 | MS.gene058799:CDS | 40.0% | |
| AGGGATACTACACATGAGTA+CGG | + | chr3.3:1698700-1698719 | MS.gene058799:intron | 40.0% | |
| ATAACCACGGCTCAATTGTA+AGG | - | chr3.3:1699954-1699973 | None:intergenic | 40.0% | |
| ATCATGACTCCTCATATTGC+AGG | + | chr3.3:1700715-1700734 | MS.gene058799:CDS | 40.0% | |
| CTCTAGCAACATTAACCAGA+AGG | - | chr3.3:1700567-1700586 | None:intergenic | 40.0% | |
| GCCAAAAATTCCAGCATACT+AGG | - | chr3.3:1699585-1699604 | None:intergenic | 40.0% | |
| GTAAAAGTTGCACCACATGA+GGG | - | chr3.3:1699033-1699052 | None:intergenic | 40.0% | |
| GTGGTCAAAAACCTTGAATC+CGG | + | chr3.3:1700610-1700629 | MS.gene058799:CDS | 40.0% | |
| TAACCACGGCTCAATTGTAA+GGG | - | chr3.3:1699953-1699972 | None:intergenic | 40.0% | |
| TATTGCTACAAAGCGGAGTT+GGG | + | chr3.3:1699184-1699203 | MS.gene058799:intron | 40.0% | |
| TCATCAAAAGCAATGTCCCA+TGG | - | chr3.3:1698215-1698234 | None:intergenic | 40.0% | |
| TGCAGATTTCCATACAGCAA+AGG | + | chr3.3:1698084-1698103 | MS.gene058799:CDS | 40.0% | |
| TGTAAAAGTTGCACCACATG+AGG | - | chr3.3:1699034-1699053 | None:intergenic | 40.0% | |
| TTATTGCTACAAAGCGGAGT+TGG | + | chr3.3:1699183-1699202 | MS.gene058799:intron | 40.0% | |
| ! | AGGTCCTCTTTTAGACTATG+AGG | + | chr3.3:1700585-1700604 | MS.gene058799:CDS | 40.0% |
| ! | CAAGGTCCATTCTGTGTTTT+AGG | + | chr3.3:1699833-1699852 | MS.gene058799:intron | 40.0% |
| ! | CATTTGTTTCTTCCCTCATG+TGG | + | chr3.3:1699018-1699037 | MS.gene058799:intron | 40.0% |
| ! | CTTAAAAAGGAGCGTGAAGT+GGG | + | chr3.3:1698318-1698337 | MS.gene058799:intron | 40.0% |
| ! | CTTCTGGTTAATGTTGCTAG+AGG | + | chr3.3:1700565-1700584 | MS.gene058799:CDS | 40.0% |
| ! | GCCTAGTATGCTGGAATTTT+TGG | + | chr3.3:1699581-1699600 | MS.gene058799:intron | 40.0% |
| ! | GGCATGCATACTTATTGACT+TGG | + | chr3.3:1699602-1699621 | MS.gene058799:intron | 40.0% |
| ! | TCTTTTAGACTATGAGGCTG+TGG | + | chr3.3:1700591-1700610 | MS.gene058799:CDS | 40.0% |
| !! | ACTATAGGTTGTTGGTGATG+TGG | + | chr3.3:1700949-1700968 | MS.gene058799:intron | 40.0% |
| !! | ACTGAAATAGATCGGCTTGT+TGG | + | chr3.3:1698818-1698837 | MS.gene058799:intron | 40.0% |
| !! | CTGAAATAGATCGGCTTGTT+GGG | + | chr3.3:1698819-1698838 | MS.gene058799:intron | 40.0% |
| !! | GAGGCTCTGAAATTCATGTA+AGG | + | chr3.3:1698547-1698566 | MS.gene058799:intron | 40.0% |
| !! | GATATGATGTCTTTTCAGGC+TGG | + | chr3.3:1699624-1699643 | MS.gene058799:intron | 40.0% |
| !! | TGATGATGGTTAGTTGCATG+AGG | + | chr3.3:1698229-1698248 | MS.gene058799:intron | 40.0% |
| !! | TGGGACATTGCTTTTGATGA+TGG | + | chr3.3:1698215-1698234 | MS.gene058799:intron | 40.0% |
| !! | TTTAGGTGTCTGATGGACTT+TGG | + | chr3.3:1698364-1698383 | MS.gene058799:intron | 40.0% |
| AACCTTGAATCCGGACACTT+AGG | + | chr3.3:1700619-1700638 | MS.gene058799:CDS | 45.0% | |
| AAGCAGTAATCCACGAGAAC+AGG | - | chr3.3:1699258-1699277 | None:intergenic | 45.0% | |
| AATGCTCAGAGGAGATTCCT+AGG | - | chr3.3:1698606-1698625 | None:intergenic | 45.0% | |
| AGCAGTAATCCACGAGAACA+GGG | - | chr3.3:1699257-1699276 | None:intergenic | 45.0% | |
| AGTACGGGGCGATACAATTA+TGG | + | chr3.3:1698716-1698735 | MS.gene058799:intron | 45.0% | |
| AGTAGCCTAAGGCTGTAAGT+TGG | + | chr3.3:1700121-1700140 | MS.gene058799:intron | 45.0% | |
| ATCCATGGCTAAGGTTTGTG+TGG | + | chr3.3:1700759-1700778 | MS.gene058799:intron | 45.0% | |
| CAATTGTAAGGGAACATCCC+AGG | - | chr3.3:1699942-1699961 | None:intergenic | 45.0% | |
| CATGCTGGAAATCCTTTGAC+AGG | + | chr3.3:1700983-1701002 | MS.gene058799:CDS | 45.0% | |
| CTCCTATAGATCCATGGCTA+AGG | + | chr3.3:1700750-1700769 | MS.gene058799:CDS | 45.0% | |
| GAAATGTCTGCGATCACTAC+TGG | - | chr3.3:1700413-1700432 | None:intergenic | 45.0% | |
| GCACGACGATTGAAACCATT+TGG | + | chr3.3:1699152-1699171 | MS.gene058799:intron | 45.0% | |
| GGATACTACACATGAGTACG+GGG | + | chr3.3:1698702-1698721 | MS.gene058799:intron | 45.0% | |
| GGGATACTACACATGAGTAC+GGG | + | chr3.3:1698701-1698720 | MS.gene058799:intron | 45.0% | |
| GTGGTTCTTCAACTTCATGC+TGG | + | chr3.3:1700968-1700987 | MS.gene058799:CDS | 45.0% | |
| TCCATACAGCAAAGGAAGCT+TGG | + | chr3.3:1698092-1698111 | MS.gene058799:CDS | 45.0% | |
| TCCTCAAGTCAGCATGTGAT+TGG | - | chr3.3:1700163-1700182 | None:intergenic | 45.0% | |
| TCTGTAACGCCTGCAATATG+AGG | - | chr3.3:1700727-1700746 | None:intergenic | 45.0% | |
| TTGAATCCGGACACTTAGGA+GGG | + | chr3.3:1700623-1700642 | MS.gene058799:CDS | 45.0% | |
| TTGTTTCAACGGAACAGGCT+AGG | - | chr3.3:1698969-1698988 | None:intergenic | 45.0% | |
| ! | AACTAAGATCGGCTCAAGCT+AGG | + | chr3.3:1698907-1698926 | MS.gene058799:intron | 45.0% |
| ! | ATTTTCCTTCCCTGTTCTCG+TGG | + | chr3.3:1699245-1699264 | MS.gene058799:intron | 45.0% |
| ! | CCACTTCACGCTCCTTTTTA+AGG | - | chr3.3:1698320-1698339 | None:intergenic | 45.0% |
| ! | CCTTAAAAAGGAGCGTGAAG+TGG | + | chr3.3:1698317-1698336 | MS.gene058799:intron | 45.0% |
| ! | GTAAGTTGGAGGACATAGTG+AGG | + | chr3.3:1700135-1700154 | MS.gene058799:intron | 45.0% |
| ! | TCCAAGCTTCCTTTGCTGTA+TGG | - | chr3.3:1698096-1698115 | None:intergenic | 45.0% |
| ! | TTTATTTCAGGGTGCCCTTC+TGG | + | chr3.3:1700549-1700568 | MS.gene058799:intron | 45.0% |
| !! | AGAAGGGCACCCTGAAATAA+AGG | - | chr3.3:1700550-1700569 | None:intergenic | 45.0% |
| !! | TCCAATCACATGCTGACTTG+AGG | + | chr3.3:1700159-1700178 | MS.gene058799:intron | 45.0% |
| !!! | ATTTTGGGGTTCGGGAACAT+TGG | + | chr3.3:1699119-1699138 | MS.gene058799:intron | 45.0% |
| !!! | TTTAATTTTTTTTTTTATCA+AGG | + | chr3.3:1698628-1698647 | MS.gene058799:intron | 5.0% |
| AGCCACACAAACCTTAGCCA+TGG | - | chr3.3:1700764-1700783 | None:intergenic | 50.0% | |
| AGCTAGGTCTGATGTAGGCT+AGG | + | chr3.3:1698923-1698942 | MS.gene058799:intron | 50.0% | |
| AGGAACCGATGTTGCATGGA+CGG | + | chr3.3:1700648-1700667 | MS.gene058799:CDS | 50.0% | |
| AGGAAGCTTGGAGAGCCTAT+CGG | + | chr3.3:1698104-1698123 | MS.gene058799:CDS | 50.0% | |
| ATGTGCTTCTAGGCTGTGTC+TGG | + | chr3.3:1698523-1698542 | MS.gene058799:intron | 50.0% | |
| CTCCTAAGTGTCCGGATTCA+AGG | - | chr3.3:1700624-1700643 | None:intergenic | 50.0% | |
| CTTGAATCCGGACACTTAGG+AGG | + | chr3.3:1700622-1700641 | MS.gene058799:CDS | 50.0% | |
| GCTCAAGCTAGGTCTGATGT+AGG | + | chr3.3:1698918-1698937 | MS.gene058799:intron | 50.0% | |
| GTAATCCACGAGAACAGGGA+AGG | - | chr3.3:1699253-1699272 | None:intergenic | 50.0% | |
| GTCCTCCAACTTACAGCCTT+AGG | - | chr3.3:1700129-1700148 | None:intergenic | 50.0% | |
| GTGAAGTGGGTAGATGATCC+AGG | + | chr3.3:1698331-1698350 | MS.gene058799:intron | 50.0% | |
| GTTCCCTTACAATTGAGCCG+TGG | + | chr3.3:1699947-1699966 | MS.gene058799:intron | 50.0% | |
| TCTGATGTAGGCTAGGCCAT+AGG | + | chr3.3:1698930-1698949 | MS.gene058799:intron | 50.0% | |
| TGCACACACACACACACGTA+GGG | + | chr3.3:1699809-1699828 | MS.gene058799:intron | 50.0% | |
| TTGTAAGGGAACATCCCAGG+AGG | - | chr3.3:1699939-1699958 | None:intergenic | 50.0% | |
| ! | AGCCTAAGGCTGTAAGTTGG+AGG | + | chr3.3:1700124-1700143 | MS.gene058799:intron | 50.0% |
| AGGCCATAGGCTCCATTGAC+CGG | + | chr3.3:1698943-1698962 | MS.gene058799:intron | 55.0% | |
| CACACACACACGTAGGGTCA+AGG | + | chr3.3:1699815-1699834 | MS.gene058799:intron | 55.0% | |
| CTACTGGGTTCAAGCGCAAG+AGG | - | chr3.3:1700397-1700416 | None:intergenic | 55.0% | |
| CTTCTAGGCTGTGTCTGGAG+AGG | + | chr3.3:1698528-1698547 | MS.gene058799:intron | 55.0% | |
| GGCTAGGAACCGATGTTGCA+TGG | + | chr3.3:1700644-1700663 | MS.gene058799:CDS | 55.0% | |
| GTGCACACACACACACACGT+AGG | + | chr3.3:1699808-1699827 | MS.gene058799:intron | 55.0% | |
| TCCTAGCCCTCCTAAGTGTC+CGG | - | chr3.3:1700632-1700651 | None:intergenic | 55.0% | |
| TGGCTCCGTCCATGCAACAT+CGG | - | chr3.3:1700656-1700675 | None:intergenic | 55.0% | |
| TGGGTTCAAGCGCAAGAGGT+TGG | - | chr3.3:1700393-1700412 | None:intergenic | 55.0% | |
| TTCAACGGAACAGGCTAGGC+CGG | - | chr3.3:1698965-1698984 | None:intergenic | 55.0% | |
| AGGCCGGTCAATGGAGCCTA+TGG | - | chr3.3:1698949-1698968 | None:intergenic | 60.0% | |
| GAACAGGCTAGGCCGGTCAA+TGG | - | chr3.3:1698958-1698977 | None:intergenic | 60.0% | |
| TCCGGACACTTAGGAGGGCT+AGG | + | chr3.3:1700628-1700647 | MS.gene058799:CDS | 60.0% | |
| !! | AGCGCAAGAGGTTGGTGCGC+AGG | - | chr3.3:1700385-1700404 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 1698078 | 1701024 | 1698078 | ID=MS.gene058799 |
| chr3.3 | mRNA | 1698078 | 1701024 | 1698078 | ID=MS.gene058799.t1;Parent=MS.gene058799 |
| chr3.3 | exon | 1698078 | 1698147 | 1698078 | ID=MS.gene058799.t1.exon1;Parent=MS.gene058799.t1 |
| chr3.3 | CDS | 1698078 | 1698147 | 1698078 | ID=cds.MS.gene058799.t1;Parent=MS.gene058799.t1 |
| chr3.3 | exon | 1698535 | 1698563 | 1698535 | ID=MS.gene058799.t1.exon2;Parent=MS.gene058799.t1 |
| chr3.3 | CDS | 1698535 | 1698563 | 1698535 | ID=cds.MS.gene058799.t1;Parent=MS.gene058799.t1 |
| chr3.3 | exon | 1699642 | 1699683 | 1699642 | ID=MS.gene058799.t1.exon3;Parent=MS.gene058799.t1 |
| chr3.3 | CDS | 1699642 | 1699683 | 1699642 | ID=cds.MS.gene058799.t1;Parent=MS.gene058799.t1 |
| chr3.3 | exon | 1700559 | 1700771 | 1700559 | ID=MS.gene058799.t1.exon4;Parent=MS.gene058799.t1 |
| chr3.3 | CDS | 1700559 | 1700771 | 1700559 | ID=cds.MS.gene058799.t1;Parent=MS.gene058799.t1 |
| chr3.3 | exon | 1700956 | 1701024 | 1700956 | ID=MS.gene058799.t1.exon5;Parent=MS.gene058799.t1 |
| chr3.3 | CDS | 1700956 | 1701024 | 1700956 | ID=cds.MS.gene058799.t1;Parent=MS.gene058799.t1 |
| Gene Sequence |
| Protein sequence |
