Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058798.t1 | XP_003598073.1 | 97.9 | 382 | 8 | 0 | 1 | 382 | 1 | 382 | 1.30E-209 | 738.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058798.t1 | A1RYE4 | 34.5 | 264 | 148 | 5 | 106 | 361 | 58 | 304 | 5.7e-33 | 143.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058798.t1 | G7J081 | 97.9 | 382 | 8 | 0 | 1 | 382 | 1 | 382 | 9.2e-210 | 738.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050277 | MS.gene058798 | 0.808873 | 2.50E-50 | -1.69E-46 |
MS.gene051633 | MS.gene058798 | 0.80771 | 4.42E-50 | -1.69E-46 |
MS.gene056069 | MS.gene058798 | -0.821243 | 4.48E-53 | -1.69E-46 |
MS.gene05795 | MS.gene058798 | 0.802542 | 5.34E-49 | -1.69E-46 |
MS.gene058798 | MS.gene058799 | 0.86068 | 1.75E-63 | -1.69E-46 |
MS.gene058798 | MS.gene058906 | 0.813206 | 2.88E-51 | -1.69E-46 |
MS.gene058798 | MS.gene060619 | 0.800886 | 1.17E-48 | -1.69E-46 |
MS.gene058798 | MS.gene061618 | 0.811388 | 7.18E-51 | -1.69E-46 |
MS.gene058798 | MS.gene06594 | 0.809731 | 1.64E-50 | -1.69E-46 |
MS.gene058798 | MS.gene06667 | 0.808634 | 2.81E-50 | -1.69E-46 |
MS.gene058798 | MS.gene06739 | 0.814692 | 1.35E-51 | -1.69E-46 |
MS.gene058798 | MS.gene06806 | 0.815975 | 7.02E-52 | -1.69E-46 |
MS.gene058798 | MS.gene06957 | 0.817542 | 3.12E-52 | -1.69E-46 |
MS.gene058798 | MS.gene07089 | 0.801021 | 1.10E-48 | -1.69E-46 |
MS.gene058798 | MS.gene074258 | 0.805772 | 1.14E-49 | -1.69E-46 |
MS.gene058798 | MS.gene074465 | 0.807577 | 4.72E-50 | -1.69E-46 |
MS.gene058798 | MS.gene08428 | 0.802409 | 5.69E-49 | -1.69E-46 |
MS.gene058798 | MS.gene08545 | 0.804772 | 1.84E-49 | -1.69E-46 |
MS.gene058798 | MS.gene09607 | 0.813633 | 2.32E-51 | -1.69E-46 |
MS.gene058798 | MS.gene20302 | 0.810217 | 1.29E-50 | -1.69E-46 |
MS.gene058798 | MS.gene25077 | 0.809069 | 2.27E-50 | -1.69E-46 |
MS.gene058798 | MS.gene25475 | 0.800618 | 1.32E-48 | -1.69E-46 |
MS.gene058798 | MS.gene27991 | 0.815776 | 7.77E-52 | -1.69E-46 |
MS.gene058798 | MS.gene35214 | 0.829883 | 4.01E-55 | -1.69E-46 |
MS.gene058798 | MS.gene36245 | 0.808955 | 2.40E-50 | -1.69E-46 |
MS.gene058798 | MS.gene36281 | 0.806727 | 7.15E-50 | -1.69E-46 |
MS.gene058798 | MS.gene41455 | 0.802895 | 4.52E-49 | -1.69E-46 |
MS.gene058798 | MS.gene43534 | 0.841822 | 3.76E-58 | -1.69E-46 |
MS.gene058798 | MS.gene43537 | 0.810444 | 1.15E-50 | -1.69E-46 |
MS.gene058798 | MS.gene44135 | -0.806031 | 1.00E-49 | -1.69E-46 |
MS.gene058798 | MS.gene47955 | 0.811464 | 6.91E-51 | -1.69E-46 |
MS.gene058798 | MS.gene53040 | 0.938843 | 3.44E-99 | -1.69E-46 |
MS.gene058798 | MS.gene63893 | 0.808858 | 2.52E-50 | -1.69E-46 |
MS.gene058798 | MS.gene67884 | 0.831074 | 2.05E-55 | -1.69E-46 |
MS.gene058798 | MS.gene69262 | 0.81683 | 4.52E-52 | -1.69E-46 |
MS.gene058798 | MS.gene72735 | 0.802529 | 5.37E-49 | -1.69E-46 |
MS.gene058798 | MS.gene74226 | 0.808158 | 3.55E-50 | -1.69E-46 |
MS.gene058798 | MS.gene80257 | 0.800346 | 1.50E-48 | -1.69E-46 |
MS.gene058798 | MS.gene83476 | 0.807142 | 5.84E-50 | -1.69E-46 |
MS.gene058798 | MS.gene83495 | 0.814028 | 1.90E-51 | -1.69E-46 |
MS.gene058798 | MS.gene86350 | 0.812987 | 3.21E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene058798 | MS.gene073336 | PPI |
MS.gene96326 | MS.gene058798 | PPI |
MS.gene012318 | MS.gene058798 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058798.t1 | MTR_3g005970 | 97.906 | 382 | 8 | 0 | 1 | 382 | 1 | 382 | 0.0 | 775 |
MS.gene058798.t1 | MTR_4g005880 | 31.496 | 254 | 154 | 5 | 117 | 367 | 151 | 387 | 1.21e-29 | 120 |
MS.gene058798.t1 | MTR_1g107480 | 30.435 | 253 | 158 | 3 | 117 | 367 | 118 | 354 | 1.55e-29 | 120 |
MS.gene058798.t1 | MTR_8g033410 | 26.286 | 350 | 210 | 11 | 45 | 375 | 1 | 321 | 1.39e-27 | 111 |
MS.gene058798.t1 | MTR_8g033400 | 28.244 | 262 | 160 | 6 | 107 | 362 | 76 | 315 | 9.33e-26 | 106 |
MS.gene058798.t1 | MTR_8g033390 | 27.174 | 276 | 174 | 6 | 106 | 375 | 64 | 318 | 9.88e-26 | 106 |
MS.gene058798.t1 | MTR_4g012960 | 26.493 | 268 | 177 | 3 | 108 | 375 | 58 | 305 | 6.35e-25 | 103 |
MS.gene058798.t1 | MTR_4g013090 | 28.517 | 263 | 155 | 6 | 108 | 362 | 58 | 295 | 5.40e-24 | 101 |
MS.gene058798.t1 | MTR_4g013100 | 27.519 | 258 | 164 | 5 | 108 | 362 | 59 | 296 | 7.18e-24 | 100 |
MS.gene058798.t1 | MTR_6g007170 | 31.086 | 267 | 150 | 9 | 112 | 366 | 116 | 360 | 1.30e-21 | 95.5 |
MS.gene058798.t1 | MTR_2g101840 | 26.217 | 267 | 174 | 4 | 99 | 362 | 50 | 296 | 1.80e-20 | 91.3 |
MS.gene058798.t1 | MTR_7g075830 | 24.555 | 281 | 173 | 7 | 118 | 380 | 57 | 316 | 3.09e-17 | 82.0 |
MS.gene058798.t1 | MTR_6g007175 | 28.716 | 296 | 155 | 12 | 86 | 366 | 56 | 310 | 9.44e-17 | 80.9 |
MS.gene058798.t1 | MTR_4g013135 | 28.044 | 271 | 172 | 5 | 108 | 375 | 58 | 308 | 4.07e-15 | 75.9 |
MS.gene058798.t1 | MTR_1g112510 | 26.493 | 268 | 180 | 7 | 119 | 375 | 88 | 349 | 1.96e-14 | 74.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058798.t1 | AT1G72190 | 63.158 | 380 | 130 | 3 | 5 | 382 | 2 | 373 | 2.49e-174 | 490 |
MS.gene058798.t1 | AT1G17745 | 31.707 | 287 | 174 | 8 | 85 | 366 | 111 | 380 | 3.02e-31 | 125 |
MS.gene058798.t1 | AT4G34200 | 31.102 | 254 | 155 | 5 | 117 | 367 | 124 | 360 | 1.48e-29 | 120 |
MS.gene058798.t1 | AT1G17745 | 29.299 | 314 | 173 | 9 | 85 | 366 | 111 | 407 | 1.84e-28 | 117 |
MS.gene058798.t1 | AT2G45630 | 28.897 | 263 | 162 | 5 | 118 | 375 | 91 | 333 | 7.14e-27 | 109 |
MS.gene058798.t1 | AT3G19480 | 30.709 | 254 | 156 | 5 | 117 | 367 | 109 | 345 | 1.88e-26 | 111 |
MS.gene058798.t1 | AT1G12550 | 27.376 | 263 | 163 | 7 | 105 | 361 | 62 | 302 | 8.56e-23 | 98.2 |
MS.gene058798.t1 | AT5G14780 | 32.773 | 238 | 128 | 8 | 125 | 351 | 101 | 317 | 1.18e-22 | 98.2 |
MS.gene058798.t1 | AT5G14780 | 32.773 | 238 | 128 | 8 | 125 | 351 | 113 | 329 | 1.57e-22 | 98.2 |
MS.gene058798.t1 | AT5G14780 | 33.473 | 239 | 125 | 9 | 125 | 351 | 127 | 343 | 1.76e-22 | 98.2 |
MS.gene058798.t1 | AT1G79870 | 28.364 | 275 | 173 | 8 | 108 | 378 | 58 | 312 | 1.70e-20 | 91.3 |
MS.gene058798.t1 | AT1G79870 | 25.735 | 272 | 165 | 7 | 108 | 378 | 58 | 293 | 4.75e-16 | 78.2 |
MS.gene058798.t1 | AT1G68010 | 26.966 | 267 | 180 | 6 | 119 | 375 | 88 | 349 | 7.62e-15 | 75.9 |
MS.gene058798.t1 | AT1G68010 | 27.027 | 259 | 174 | 6 | 119 | 367 | 88 | 341 | 2.38e-14 | 73.9 |
MS.gene058798.t1 | AT1G68010 | 26.866 | 268 | 180 | 7 | 119 | 375 | 88 | 350 | 2.45e-13 | 71.2 |
Find 77 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTATCGGTGATACTTTATT+TGG | 0.071786 | 3.3:+1685551 | MS.gene058798:CDS |
GATAATGTAGATATTCATTT+TGG | 0.088675 | 3.3:+1686536 | MS.gene058798:intron |
CTTCATTTCTTCCATGAAAA+AGG | 0.182361 | 3.3:+1687095 | MS.gene058798:CDS |
TTTATTTCAGGGTGCCCTTC+TGG | 0.268864 | 3.3:+1687982 | MS.gene058798:intron |
AAATTTCAATATCTGATCAT+TGG | 0.336562 | 3.3:-1688116 | None:intergenic |
TCCAAGCTTCCTTTGCTGTA+TGG | 0.363828 | 3.3:-1685525 | None:intergenic |
AAGACCCAACATTAGATATA+TGG | 0.364315 | 3.3:-1684716 | None:intergenic |
CTATCGGTGATACTTTATTT+GGG | 0.376577 | 3.3:+1685552 | MS.gene058798:CDS |
AATTTCAATATCTGATCATT+GGG | 0.380747 | 3.3:-1688115 | None:intergenic |
AGAGAAGAGAAGTGAGTGTT+GGG | 0.398307 | 3.3:-1681395 | None:intergenic |
CTCCTAAGTGTCCGGATTCA+AGG | 0.399021 | 3.3:-1688054 | None:intergenic |
ATCATGACTCCTCATATTGC+AGG | 0.400259 | 3.3:+1688148 | MS.gene058798:CDS |
TACTACACAAACATGATAGT+TGG | 0.402501 | 3.3:-1684430 | None:intergenic |
ATCTGATCATTGGGATCAAA+TGG | 0.411289 | 3.3:-1688106 | None:intergenic |
GCACGACGATTGAAACCATT+TGG | 0.411552 | 3.3:+1686585 | MS.gene058798:CDS |
CTACAACAACTCAAGATTCA+AGG | 0.411680 | 3.3:+1681416 | MS.gene058798:CDS |
AGGATCCCCAGTGGTGCTAC+TGG | 0.419307 | 3.3:+1684667 | MS.gene058798:CDS |
TAGAGATGTACCTTGATAGA+TGG | 0.426362 | 3.3:-1682580 | None:intergenic |
TTCAGTTGCATGTGCTGAAA+TGG | 0.438602 | 3.3:+1684693 | MS.gene058798:CDS |
TAGAGAAGAGAAGTGAGTGT+TGG | 0.439410 | 3.3:-1681396 | None:intergenic |
CTTATAATGCAGTATGGTGT+TGG | 0.439984 | 3.3:+1684504 | MS.gene058798:CDS |
AACCTTAGCCATGGATCTAT+AGG | 0.450234 | 3.3:-1688185 | None:intergenic |
TATTGCTACAAAGCGGAGTT+GGG | 0.456275 | 3.3:+1686617 | MS.gene058798:CDS |
ATGAAGCTTATAATGCAGTA+TGG | 0.460758 | 3.3:+1684498 | MS.gene058798:CDS |
CCTTGGGAATTTCTTCCAAC+GGG | 0.461257 | 3.3:-1684401 | None:intergenic |
TCCATACAGCAAAGGAAGCT+TGG | 0.462894 | 3.3:+1685524 | MS.gene058798:CDS |
ATGATAGTTGGCAATAGCCT+TGG | 0.466311 | 3.3:-1684418 | None:intergenic |
TCCTAGCCCTCCTAAGTGTC+CGG | 0.468903 | 3.3:-1688062 | None:intergenic |
AAAATCTGATGGAGAGAAAT+GGG | 0.472016 | 3.3:+1682455 | MS.gene058798:CDS |
CATGCTGGAAATCCTTTGAC+AGG | 0.473055 | 3.3:+1688416 | MS.gene058798:CDS |
TTATTGCTACAAAGCGGAGT+TGG | 0.473922 | 3.3:+1686616 | MS.gene058798:CDS |
AATGGCCATATATCTAATGT+TGG | 0.489549 | 3.3:+1684711 | MS.gene058798:CDS |
TGAATTTCCAGTAGCACCAC+TGG | 0.503475 | 3.3:-1684674 | None:intergenic |
ATGGCCATATATCTAATGTT+GGG | 0.506294 | 3.3:+1684712 | MS.gene058798:CDS |
TGATAGTTGGCAATAGCCTT+GGG | 0.519273 | 3.3:-1684417 | None:intergenic |
CTTAAACTTAAACAGTGAAA+CGG | 0.520932 | 3.3:+1686854 | MS.gene058798:CDS |
GCCTTGGGAATTTCTTCCAA+CGG | 0.523993 | 3.3:-1684402 | None:intergenic |
ACTATAGGTTGTTGGTGATG+TGG | 0.525653 | 3.3:+1688382 | MS.gene058798:intron |
GTGGTTCTTCAACTTCATGC+TGG | 0.529637 | 3.3:+1688401 | MS.gene058798:CDS |
ATCGATGCTGCAACAAAGCA+TGG | 0.530276 | 3.3:+1684631 | MS.gene058798:CDS |
AACCTTGAATCCGGACACTT+AGG | 0.536199 | 3.3:+1688052 | MS.gene058798:CDS |
GCAGAATCATCCATCTATCA+AGG | 0.542084 | 3.3:+1682570 | MS.gene058798:CDS |
GGCTAGGAACCGATGTTGCA+TGG | 0.544266 | 3.3:+1688077 | MS.gene058798:CDS |
ACTAACTCAATTCCTGTCAA+AGG | 0.547459 | 3.3:-1688428 | None:intergenic |
AGGAACCGATGTTGCATGGA+CGG | 0.557674 | 3.3:+1688081 | MS.gene058798:CDS |
TTATAATGCAGTATGGTGTT+GGG | 0.558492 | 3.3:+1684505 | MS.gene058798:CDS |
ACAGCCTCATAGTCTAAAAG+AGG | 0.560341 | 3.3:-1688022 | None:intergenic |
CTCCTATAGATCCATGGCTA+AGG | 0.568330 | 3.3:+1688183 | MS.gene058798:CDS |
CTTGAATCCGGACACTTAGG+AGG | 0.570448 | 3.3:+1688055 | MS.gene058798:CDS |
CCAAATAAAGTATCACCGAT+AGG | 0.575385 | 3.3:-1685551 | None:intergenic |
AATGCAGTATGGTGTTGGGC+TGG | 0.576747 | 3.3:+1684509 | MS.gene058798:CDS |
CAGTATGGTGTTGGGCTGGA+AGG | 0.577929 | 3.3:+1684513 | MS.gene058798:CDS |
GAATTTCCAGTAGCACCACT+GGG | 0.581979 | 3.3:-1684673 | None:intergenic |
TCCGGACACTTAGGAGGGCT+AGG | 0.583295 | 3.3:+1688061 | MS.gene058798:CDS |
GTAGGTTGATGTTCTCCCGT+TGG | 0.587056 | 3.3:+1684386 | MS.gene058798:intron |
CTTCTGGTTAATGTTGCTAG+AGG | 0.594373 | 3.3:+1687998 | MS.gene058798:CDS |
CTCTAGCAACATTAACCAGA+AGG | 0.595259 | 3.3:-1687997 | None:intergenic |
TGCAGATTTCCATACAGCAA+AGG | 0.595617 | 3.3:+1685516 | MS.gene058798:CDS |
GAAGATACTATACTTGCTTG+CGG | 0.595687 | 3.3:-1684741 | None:intergenic |
AGCCACACAAACCTTAGCCA+TGG | 0.596880 | 3.3:-1688194 | None:intergenic |
TGATGATCTTGTTGATGTGA+AGG | 0.599066 | 3.3:+1686776 | MS.gene058798:CDS |
AGGAAGCTTGGAGAGCCTAT+CGG | 0.606938 | 3.3:+1685536 | MS.gene058798:CDS |
AGCATGGAATCAAAGTTGCT+AGG | 0.608422 | 3.3:+1684647 | MS.gene058798:CDS |
AGAACACTCCTATAGATCCA+TGG | 0.614020 | 3.3:+1688177 | MS.gene058798:CDS |
CCCGTTGGAAGAAATTCCCA+AGG | 0.614180 | 3.3:+1684401 | MS.gene058798:CDS |
GTTGTATATAGATGAGAACA+TGG | 0.621208 | 3.3:-1682538 | None:intergenic |
TCTGTAACGCCTGCAATATG+AGG | 0.621540 | 3.3:-1688157 | None:intergenic |
GATGATCTTGTTGATGTGAA+GGG | 0.630775 | 3.3:+1686777 | MS.gene058798:CDS |
TGGCTCCGTCCATGCAACAT+CGG | 0.631902 | 3.3:-1688086 | None:intergenic |
AAAGTGTGTTGTACTTGTTG+AGG | 0.638382 | 3.3:+1681344 | MS.gene058798:CDS |
AGATGAGAACATGGGAACTG+AGG | 0.641093 | 3.3:-1682529 | None:intergenic |
TTGAATCCGGACACTTAGGA+GGG | 0.659810 | 3.3:+1688056 | MS.gene058798:CDS |
TCTAGCAACATTAACCAGAA+GGG | 0.669159 | 3.3:-1687996 | None:intergenic |
TAAAAGTTATTGCTACAAAG+CGG | 0.687855 | 3.3:+1686610 | MS.gene058798:CDS |
TTGTATATAGATGAGAACAT+GGG | 0.718125 | 3.3:-1682537 | None:intergenic |
AAAGTTGCTAGGATCCCCAG+TGG | 0.758524 | 3.3:+1684658 | MS.gene058798:CDS |
AATTTCCAGTAGCACCACTG+GGG | 0.785993 | 3.3:-1684672 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 1681334 | 1688457 | 1681334 | ID=MS.gene058798 |
chr3.3 | mRNA | 1681334 | 1688457 | 1681334 | ID=MS.gene058798.t1;Parent=MS.gene058798 |
chr3.3 | exon | 1681334 | 1681437 | 1681334 | ID=MS.gene058798.t1.exon1;Parent=MS.gene058798.t1 |
chr3.3 | CDS | 1681334 | 1681437 | 1681334 | ID=cds.MS.gene058798.t1;Parent=MS.gene058798.t1 |
chr3.3 | exon | 1682453 | 1682591 | 1682453 | ID=MS.gene058798.t1.exon2;Parent=MS.gene058798.t1 |
chr3.3 | CDS | 1682453 | 1682591 | 1682453 | ID=cds.MS.gene058798.t1;Parent=MS.gene058798.t1 |
chr3.3 | exon | 1684390 | 1684534 | 1684390 | ID=MS.gene058798.t1.exon3;Parent=MS.gene058798.t1 |
chr3.3 | CDS | 1684390 | 1684534 | 1684390 | ID=cds.MS.gene058798.t1;Parent=MS.gene058798.t1 |
chr3.3 | exon | 1684623 | 1684750 | 1684623 | ID=MS.gene058798.t1.exon4;Parent=MS.gene058798.t1 |
chr3.3 | CDS | 1684623 | 1684750 | 1684623 | ID=cds.MS.gene058798.t1;Parent=MS.gene058798.t1 |
chr3.3 | exon | 1685509 | 1685580 | 1685509 | ID=MS.gene058798.t1.exon5;Parent=MS.gene058798.t1 |
chr3.3 | CDS | 1685509 | 1685580 | 1685509 | ID=cds.MS.gene058798.t1;Parent=MS.gene058798.t1 |
chr3.3 | exon | 1686546 | 1686675 | 1686546 | ID=MS.gene058798.t1.exon6;Parent=MS.gene058798.t1 |
chr3.3 | CDS | 1686546 | 1686675 | 1686546 | ID=cds.MS.gene058798.t1;Parent=MS.gene058798.t1 |
chr3.3 | exon | 1686769 | 1686875 | 1686769 | ID=MS.gene058798.t1.exon7;Parent=MS.gene058798.t1 |
chr3.3 | CDS | 1686769 | 1686875 | 1686769 | ID=cds.MS.gene058798.t1;Parent=MS.gene058798.t1 |
chr3.3 | exon | 1687075 | 1687116 | 1687075 | ID=MS.gene058798.t1.exon8;Parent=MS.gene058798.t1 |
chr3.3 | CDS | 1687075 | 1687116 | 1687075 | ID=cds.MS.gene058798.t1;Parent=MS.gene058798.t1 |
chr3.3 | exon | 1687992 | 1688204 | 1687992 | ID=MS.gene058798.t1.exon9;Parent=MS.gene058798.t1 |
chr3.3 | CDS | 1687992 | 1688204 | 1687992 | ID=cds.MS.gene058798.t1;Parent=MS.gene058798.t1 |
chr3.3 | exon | 1688389 | 1688457 | 1688389 | ID=MS.gene058798.t1.exon10;Parent=MS.gene058798.t1 |
chr3.3 | CDS | 1688389 | 1688457 | 1688389 | ID=cds.MS.gene058798.t1;Parent=MS.gene058798.t1 |
Gene Sequence |
Protein sequence |