Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06684.t1 | KEH35467.1 | 99.8 | 869 | 2 | 0 | 1 | 869 | 1 | 869 | 0.00E+00 | 1700.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06684.t1 | Q9FJD4 | 79.5 | 869 | 177 | 1 | 1 | 869 | 3 | 870 | 0.0e+00 | 1386.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06684.t1 | A0A072V0X7 | 99.8 | 869 | 2 | 0 | 1 | 869 | 1 | 869 | 0.0e+00 | 1700.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049287 | MS.gene06684 | 0.841455 | 4.70E-58 | -1.69E-46 |
| MS.gene050786 | MS.gene06684 | 0.828145 | 1.06E-54 | -1.69E-46 |
| MS.gene052358 | MS.gene06684 | 0.805978 | 1.03E-49 | -1.69E-46 |
| MS.gene054952 | MS.gene06684 | 0.847458 | 1.14E-59 | -1.69E-46 |
| MS.gene056971 | MS.gene06684 | 0.809651 | 1.70E-50 | -1.69E-46 |
| MS.gene057127 | MS.gene06684 | 0.997994 | 1.14E-253 | -1.69E-46 |
| MS.gene058799 | MS.gene06684 | -0.803824 | 2.90E-49 | -1.69E-46 |
| MS.gene060810 | MS.gene06684 | 0.802564 | 5.29E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06684.t1 | MTR_3g491860 | 99.770 | 869 | 2 | 0 | 1 | 869 | 1 | 869 | 0.0 | 1792 |
| MS.gene06684.t1 | MTR_3g491840 | 90.679 | 869 | 80 | 1 | 1 | 869 | 1 | 868 | 0.0 | 1591 |
| MS.gene06684.t1 | MTR_8g099785 | 77.995 | 868 | 188 | 2 | 1 | 867 | 3 | 868 | 0.0 | 1427 |
| MS.gene06684.t1 | MTR_1g059590 | 32.517 | 449 | 240 | 15 | 127 | 536 | 3 | 427 | 9.55e-40 | 156 |
| MS.gene06684.t1 | MTR_1g059590 | 31.881 | 436 | 215 | 15 | 133 | 536 | 9 | 394 | 1.35e-34 | 140 |
| MS.gene06684.t1 | MTR_1g112920 | 23.726 | 628 | 342 | 26 | 29 | 590 | 45 | 601 | 7.52e-21 | 99.0 |
| MS.gene06684.t1 | MTR_1g112920 | 23.726 | 628 | 342 | 26 | 29 | 590 | 45 | 601 | 9.37e-21 | 98.6 |
| MS.gene06684.t1 | MTR_2g006750 | 22.260 | 584 | 367 | 20 | 14 | 578 | 16 | 531 | 1.35e-12 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06684.t1 | AT5G53480 | 79.517 | 869 | 177 | 1 | 1 | 869 | 3 | 870 | 0.0 | 1437 |
| MS.gene06684.t1 | AT3G08947 | 57.099 | 655 | 276 | 5 | 213 | 865 | 1 | 652 | 0.0 | 747 |
| MS.gene06684.t1 | AT3G08947 | 59.386 | 586 | 233 | 5 | 213 | 796 | 1 | 583 | 0.0 | 700 |
| MS.gene06684.t1 | AT2G16950 | 24.503 | 604 | 331 | 23 | 46 | 590 | 61 | 598 | 1.27e-26 | 117 |
| MS.gene06684.t1 | AT2G16950 | 24.507 | 608 | 330 | 24 | 46 | 590 | 61 | 602 | 7.97e-26 | 115 |
Find 224 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTTCTTGGTCTCTCTTTC+TGG | -0.012550 | 3.3:-76533829 | MS.gene06684:CDS |
| CTCTCCAAGCCATTGAATTC+TGG | 0.197925 | 3.3:-76533108 | MS.gene06684:CDS |
| AGAAAGTCTTCGGCAATTTC+AGG | 0.216352 | 3.3:-76533866 | MS.gene06684:CDS |
| TGACAAAGACTGTTGAATTA+AGG | 0.267917 | 3.3:+76531353 | None:intergenic |
| GGGATATTAGAGGCATATTC+TGG | 0.268252 | 3.3:-76531645 | MS.gene06684:CDS |
| GCATTTCCCTCATTAATAAT+AGG | 0.268484 | 3.3:+76532593 | None:intergenic |
| GACACCACTGCTTGGACTTT+GGG | 0.272684 | 3.3:-76532656 | MS.gene06684:CDS |
| GCAAAACCTTCCTGGTTTCT+TGG | 0.279761 | 3.3:-76533842 | MS.gene06684:CDS |
| CAGCCTTTCTCAGCAACATT+AGG | 0.287721 | 3.3:+76532527 | None:intergenic |
| TCCCCACATTCTCCAGTTCT+TGG | 0.294606 | 3.3:-76531568 | MS.gene06684:CDS |
| ACTAGAGCACTGAGCATAAA+TGG | 0.300642 | 3.3:+76532704 | None:intergenic |
| CAAGTTGTTGCTAAAATTGC+TGG | 0.301501 | 3.3:-76533598 | MS.gene06684:CDS |
| GTTTCTTGGTCTCTCTTTCT+GGG | 0.305155 | 3.3:-76533828 | MS.gene06684:CDS |
| TACATTAACTCTTTGAGAAA+TGG | 0.314718 | 3.3:-76531666 | MS.gene06684:CDS |
| GGCAGGTATTTAGCAAAATC+AGG | 0.324114 | 3.3:+76532020 | None:intergenic |
| ATACTGCAAGAGAACATATT+TGG | 0.329593 | 3.3:+76532148 | None:intergenic |
| TCAAGAAACTTGTAAAATTC+AGG | 0.332719 | 3.3:+76531999 | None:intergenic |
| AGACACCACTGCTTGGACTT+TGG | 0.341617 | 3.3:-76532657 | MS.gene06684:CDS |
| AACTTATAGGCCTTCTTTGT+GGG | 0.345240 | 3.3:-76532214 | MS.gene06684:CDS |
| GCTTCCCTCTGTCTCCAATC+TGG | 0.354117 | 3.3:+76532803 | None:intergenic |
| GCAGTATGCTGATCAGATAA+TGG | 0.356944 | 3.3:-76532132 | MS.gene06684:CDS |
| TTTCAGGAGCAAAACCTTCC+TGG | 0.362971 | 3.3:-76533850 | MS.gene06684:CDS |
| ATTCTTACTGCTGTAGTTCA+AGG | 0.372529 | 3.3:-76533415 | MS.gene06684:CDS |
| TTTGAGAAATGGGATATTAG+AGG | 0.373265 | 3.3:-76531655 | MS.gene06684:CDS |
| AACAGATATAGCACGATTGA+TGG | 0.383244 | 3.3:+76531254 | None:intergenic |
| AACAGATGAAACAGCTCCTT+TGG | 0.387973 | 3.3:-76532327 | MS.gene06684:CDS |
| CATGCCTTGGTTTAGTTGCT+CGG | 0.389677 | 3.3:-76532886 | MS.gene06684:CDS |
| AGCCTTTCTCAGCAACATTA+GGG | 0.389846 | 3.3:+76532528 | None:intergenic |
| GGTTTAGTTGCTCGGACTAC+TGG | 0.392473 | 3.3:-76532878 | MS.gene06684:CDS |
| GAACTTATAGGCCTTCTTTG+TGG | 0.395988 | 3.3:-76532215 | MS.gene06684:CDS |
| GGAGAACTGTAATAATTTGT+TGG | 0.397331 | 3.3:+76532570 | None:intergenic |
| ACATCACAGCAAAGGCTGTT+AGG | 0.397636 | 3.3:-76533150 | MS.gene06684:CDS |
| GTATGCATTTGGCTCTATCT+TGG | 0.398069 | 3.3:-76532774 | MS.gene06684:CDS |
| GTATCAAACCTGCCAACTTT+CGG | 0.403548 | 3.3:+76533773 | None:intergenic |
| GCCAACTTTCGGCTATCAAC+TGG | 0.406087 | 3.3:+76533784 | None:intergenic |
| TACTCCAGAATTCAATGGCT+TGG | 0.406106 | 3.3:+76533104 | None:intergenic |
| CCTCTGTCTCCAATCTGGTT+TGG | 0.406779 | 3.3:+76532808 | None:intergenic |
| TGAAAACAGAAAGCGGGAAT+TGG | 0.407494 | 3.3:-76533725 | MS.gene06684:CDS |
| TTTCTTCACAGTTCAATTGT+TGG | 0.411323 | 3.3:-76532620 | MS.gene06684:CDS |
| TGCAGCGAAGGCCCAGGTTA+AGG | 0.412867 | 3.3:-76533677 | MS.gene06684:CDS |
| GCAAGCAACTTTGGAGACTC+TGG | 0.414579 | 3.3:-76533494 | MS.gene06684:CDS |
| GAGCATAAGGAATCAAGATC+TGG | 0.417948 | 3.3:+76531589 | None:intergenic |
| GTGTAGTCGGCGACATATGC+AGG | 0.418380 | 3.3:-76531926 | MS.gene06684:CDS |
| GAGGAGGCCATGCTAGCTAT+TGG | 0.419964 | 3.3:-76532065 | MS.gene06684:CDS |
| ACAAGAGGTACTAATTTGTC+TGG | 0.420575 | 3.3:+76532740 | None:intergenic |
| CTTACGTACAGTTCCGTCAA+TGG | 0.421548 | 3.3:+76533897 | None:intergenic |
| ACATTAACTCTTTGAGAAAT+GGG | 0.422715 | 3.3:-76531665 | MS.gene06684:CDS |
| AATAGTGATCCTATCAGTTC+AGG | 0.424523 | 3.3:+76533550 | None:intergenic |
| AGCACGATTGATGGCCAACT+TGG | 0.424564 | 3.3:+76531263 | None:intergenic |
| GAGAACTGTAATAATTTGTT+GGG | 0.427273 | 3.3:+76532571 | None:intergenic |
| TGCACTCGTCCCTCTGCTGT+TGG | 0.428521 | 3.3:-76532981 | MS.gene06684:CDS |
| TGTATATGCTATCCAAGAAC+TGG | 0.432522 | 3.3:+76531556 | None:intergenic |
| TGATGAAGAGACTGATATCT+TGG | 0.432783 | 3.3:-76533074 | MS.gene06684:CDS |
| TCAATGGCTTGGAGAGCAAC+AGG | 0.436583 | 3.3:+76533115 | None:intergenic |
| ATGTCAGACTTGCTGCTGCC+AGG | 0.436780 | 3.3:-76533366 | MS.gene06684:CDS |
| CAGTATGCTGATCAGATAAT+GGG | 0.437742 | 3.3:-76532131 | MS.gene06684:CDS |
| TGGAGAATGTGGGGAGCATA+AGG | 0.441829 | 3.3:+76531576 | None:intergenic |
| AACAGCAGAGGGACGAGTGC+AGG | 0.444736 | 3.3:+76532983 | None:intergenic |
| AATCGTGCTATATCTGTTTG+AGG | 0.448881 | 3.3:-76531249 | None:intergenic |
| GAAGCAGCGACGTATGCATT+TGG | 0.449296 | 3.3:-76532785 | MS.gene06684:CDS |
| TCATGTCAAGCAAGCAACTT+TGG | 0.450868 | 3.3:-76533503 | MS.gene06684:CDS |
| GAAGCAAACATGCCTTAACC+TGG | 0.450881 | 3.3:+76533665 | None:intergenic |
| ACAGTCATTATTCAGAAGCT+AGG | 0.451708 | 3.3:-76532185 | MS.gene06684:CDS |
| TTGAATGCTCAATCCATTGA+CGG | 0.452532 | 3.3:-76533910 | MS.gene06684:CDS |
| GTCTTGATCAACAACCTCAT+GGG | 0.455712 | 3.3:+76533450 | None:intergenic |
| TGCATTTGGCTCTATCTTGG+AGG | 0.457960 | 3.3:-76532771 | MS.gene06684:CDS |
| GCTTGACATGAGCAGGAACT+TGG | 0.460430 | 3.3:+76533515 | None:intergenic |
| GATGGCCAACTTGGCCCATT+CGG | 0.460803 | 3.3:+76531272 | None:intergenic |
| TTGATGAATTCTTAAACCCT+TGG | 0.462813 | 3.3:+76531616 | None:intergenic |
| AATTGTACTCCAGAATTCAA+TGG | 0.464626 | 3.3:+76533099 | None:intergenic |
| AACCCTGGGCGAGAAAATAC+AGG | 0.464646 | 3.3:+76532498 | None:intergenic |
| CGCCCAGGGTTATGAGGATG+TGG | 0.470202 | 3.3:-76532486 | MS.gene06684:CDS |
| TCCTGAATTGAAAATACGTC+TGG | 0.474094 | 3.3:-76533248 | MS.gene06684:CDS |
| TTATATATGTCCTGGATGTA+AGG | 0.474321 | 3.3:+76533172 | None:intergenic |
| GAGATGTACGCCCACACATC+AGG | 0.474951 | 3.3:-76531711 | MS.gene06684:CDS |
| ACAAGAAGAGGATCAAGATC+TGG | 0.475193 | 3.3:-76532945 | MS.gene06684:CDS |
| GATACACTTGGAAGCAATGC+TGG | 0.475465 | 3.3:-76531378 | MS.gene06684:CDS |
| CTCTGTGGGTGACAGTGAGA+AGG | 0.475830 | 3.3:+76532417 | None:intergenic |
| AAACAGTGGCCTGAACTGAT+AGG | 0.477544 | 3.3:-76533559 | MS.gene06684:CDS |
| AGATAATGGGACTATTCATC+CGG | 0.478120 | 3.3:-76532118 | MS.gene06684:CDS |
| AAAATATTCCCTTACTGTGA+TGG | 0.478884 | 3.3:-76531891 | MS.gene06684:CDS |
| AAATATTCCCTTACTGTGAT+GGG | 0.479316 | 3.3:-76531890 | MS.gene06684:CDS |
| GTCATAATCCCATCACAGTA+AGG | 0.480569 | 3.3:+76531882 | None:intergenic |
| CGACATATGCAGGGCATTGG+AGG | 0.480820 | 3.3:-76531916 | MS.gene06684:CDS |
| CATGGCCTCCTCATGGGCAG+TGG | 0.481836 | 3.3:+76532076 | None:intergenic |
| GATTAAAGAATCTGCCGAAT+GGG | 0.485471 | 3.3:-76531286 | MS.gene06684:CDS |
| GCATTTGGCTCTATCTTGGA+GGG | 0.486868 | 3.3:-76532770 | MS.gene06684:CDS |
| CAGAGGGACGAGTGCAGGAA+GGG | 0.487738 | 3.3:+76532988 | None:intergenic |
| GAATATGTGGGTGATACCAC+TGG | 0.488697 | 3.3:-76533049 | MS.gene06684:CDS |
| CAACAGTTACGGCACAAACT+TGG | 0.489107 | 3.3:+76531949 | None:intergenic |
| GTCCCTAATGTTGCTGAGAA+AGG | 0.491608 | 3.3:-76532530 | MS.gene06684:CDS |
| CGGCGACATATGCAGGGCAT+TGG | 0.493884 | 3.3:-76531919 | MS.gene06684:CDS |
| AGAATATTACCAAACCAGAT+TGG | 0.501979 | 3.3:-76532817 | MS.gene06684:CDS |
| GTTGATAGCCGAAAGTTGGC+AGG | 0.503864 | 3.3:-76533781 | MS.gene06684:CDS |
| CTGTGATGTTATATATGTCC+TGG | 0.504029 | 3.3:+76533164 | None:intergenic |
| GGTCTTGATCAACAACCTCA+TGG | 0.504483 | 3.3:+76533449 | None:intergenic |
| TGGCACACCTATTATTAATG+AGG | 0.506178 | 3.3:-76532600 | MS.gene06684:CDS |
| GAGCACTGAGCATAAATGGT+AGG | 0.506623 | 3.3:+76532708 | None:intergenic |
| CCTCTCTTGTACTTGACGCT+CGG | 0.507603 | 3.3:-76533633 | MS.gene06684:CDS |
| GGTGATATAGCACTAGCTAT+AGG | 0.507802 | 3.3:-76531789 | MS.gene06684:CDS |
| GCCGACTACACCAACAGTTA+CGG | 0.508961 | 3.3:+76531938 | None:intergenic |
| GTTGCTTGCTTGACATGAGC+AGG | 0.509107 | 3.3:+76533508 | None:intergenic |
| GCATATTCTGGGATCTTCCA+AGG | 0.514404 | 3.3:-76531633 | MS.gene06684:CDS |
| ATCTGCCGAATGGGCCAAGT+TGG | 0.515537 | 3.3:-76531277 | MS.gene06684:CDS |
| AGCTAGCATGGCCTCCTCAT+GGG | 0.516971 | 3.3:+76532070 | None:intergenic |
| ACTTGTAATGCCTTTCATTG+AGG | 0.519790 | 3.3:-76532840 | MS.gene06684:CDS |
| CCACACATCAGGCTTTGACT+TGG | 0.521208 | 3.3:-76531700 | MS.gene06684:CDS |
| TGTCAGACTTGCTGCTGCCA+GGG | 0.521590 | 3.3:-76533365 | MS.gene06684:CDS |
| ATGGCAGGTGGTACATGCCT+TGG | 0.523405 | 3.3:-76532899 | MS.gene06684:CDS |
| AGCATGCTGAAGAAAGTCTT+CGG | 0.523420 | 3.3:-76533876 | MS.gene06684:CDS |
| GGATATTAGAGGCATATTCT+GGG | 0.524280 | 3.3:-76531644 | MS.gene06684:CDS |
| GTGTCTTTAACATGGTTGCT+TGG | 0.524596 | 3.3:+76532674 | None:intergenic |
| ACCAGTTGATAGCCGAAAGT+TGG | 0.526677 | 3.3:-76533785 | MS.gene06684:CDS |
| GTAATATTCTCCTCAATGAA+AGG | 0.527093 | 3.3:+76532830 | None:intergenic |
| TCTGTGGGTGACAGTGAGAA+GGG | 0.528574 | 3.3:+76532418 | None:intergenic |
| TAGCTAGCATGGCCTCCTCA+TGG | 0.530327 | 3.3:+76532069 | None:intergenic |
| ATCACCAATGCATGAAAACA+AGG | 0.531126 | 3.3:+76531806 | None:intergenic |
| TGATATCTTGGAAGAATATG+TGG | 0.534358 | 3.3:-76533062 | MS.gene06684:CDS |
| GAAAGAGAGACCAAGAAACC+AGG | 0.534523 | 3.3:+76533832 | None:intergenic |
| CAAGCAACTTTGGAGACTCT+GGG | 0.535824 | 3.3:-76533493 | MS.gene06684:CDS |
| AAAACAGCCATTGGTGTCGT+TGG | 0.535827 | 3.3:-76531411 | MS.gene06684:CDS |
| AGTAATGTTTCCAACAGCAG+AGG | 0.542094 | 3.3:+76532971 | None:intergenic |
| CAGTCATTATTCAGAAGCTA+GGG | 0.543317 | 3.3:-76532184 | MS.gene06684:CDS |
| AACATTACTCAAACAAGAAG+AGG | 0.546231 | 3.3:-76532957 | MS.gene06684:CDS |
| GTCATTAGACACTGCAGCGA+AGG | 0.546662 | 3.3:-76533689 | MS.gene06684:CDS |
| GGACATCCTTCATGCTCTGA+AGG | 0.549506 | 3.3:+76532549 | None:intergenic |
| GGCACACCTATTATTAATGA+GGG | 0.549827 | 3.3:-76532599 | MS.gene06684:CDS |
| ACACCACTGCTTGGACTTTG+GGG | 0.550181 | 3.3:-76532655 | MS.gene06684:CDS |
| TTCCCACATCCTCATAACCC+TGG | 0.550647 | 3.3:+76532483 | None:intergenic |
| ATGTTAAAGACACCACTGCT+TGG | 0.550791 | 3.3:-76532664 | MS.gene06684:CDS |
| CACATAATACATGGCCGCAA+TGG | 0.551428 | 3.3:+76533204 | None:intergenic |
| AGACACTGCAGCGAAGGCCC+AGG | 0.552156 | 3.3:-76533683 | MS.gene06684:CDS |
| GCCGTAACTGTTGGTGTAGT+CGG | 0.552927 | 3.3:-76531939 | MS.gene06684:CDS |
| ACTAGTTTCTGTCATCATGA+TGG | 0.555623 | 3.3:-76532297 | MS.gene06684:CDS |
| CTGTCAAGCACCCACAAAGA+AGG | 0.556847 | 3.3:+76532204 | None:intergenic |
| CTCCGTAGCATCCTCTCTGT+GGG | 0.557611 | 3.3:+76532403 | None:intergenic |
| CATTTGGCTCTATCTTGGAG+GGG | 0.558186 | 3.3:-76532769 | MS.gene06684:CDS |
| GAGGATCAAGATCTGGATGA+AGG | 0.560543 | 3.3:-76532938 | MS.gene06684:CDS |
| TATCCAAGAACTGGAGAATG+TGG | 0.561174 | 3.3:+76531565 | None:intergenic |
| AAGGGCTCCAATAGCTAGCA+TGG | 0.562861 | 3.3:+76532058 | None:intergenic |
| GAAGTTGGCTCCTTACATCC+AGG | 0.563506 | 3.3:-76533182 | MS.gene06684:CDS |
| TCCCACATCCTCATAACCCT+GGG | 0.563687 | 3.3:+76532484 | None:intergenic |
| AGCATAAGGAATCAAGATCT+GGG | 0.564981 | 3.3:+76531590 | None:intergenic |
| AGCGGGAATTGGTTCAGAGA+TGG | 0.567281 | 3.3:-76533714 | MS.gene06684:CDS |
| TTTCTTGGTCTCTCTTTCTG+GGG | 0.568371 | 3.3:-76533827 | MS.gene06684:CDS |
| CATAGCGATGGAAGTTACTC+AGG | 0.569430 | 3.3:-76533938 | None:intergenic |
| AATGTTGCTGAGAAAGGCTG+TGG | 0.571738 | 3.3:-76532524 | MS.gene06684:CDS |
| AGTTCTCCTTCAGAGCATGA+AGG | 0.572114 | 3.3:-76532555 | MS.gene06684:CDS |
| AGTTCAGGCCACTGTTTCTG+AGG | 0.572502 | 3.3:+76533565 | None:intergenic |
| GCAGAGGGACGAGTGCAGGA+AGG | 0.572612 | 3.3:+76532987 | None:intergenic |
| GAAACTTGTAAAATTCAGGC+AGG | 0.572839 | 3.3:+76532003 | None:intergenic |
| CAAGGATGAAAACAGAAAGC+GGG | 0.572936 | 3.3:-76533731 | MS.gene06684:CDS |
| GTTCTTGGATAGCATATACA+TGG | 0.572950 | 3.3:-76531553 | MS.gene06684:CDS |
| TGATTAAAGAATCTGCCGAA+TGG | 0.574297 | 3.3:-76531287 | MS.gene06684:CDS |
| CCAAACCAGATTGGAGACAG+AGG | 0.578424 | 3.3:-76532808 | MS.gene06684:CDS |
| CATATTCTGGGATCTTCCAA+GGG | 0.579806 | 3.3:-76531632 | MS.gene06684:CDS |
| TAATGCTCTCGAATTTGCGC+AGG | 0.579901 | 3.3:-76533335 | MS.gene06684:CDS |
| ACTCCGTAGCATCCTCTCTG+TGG | 0.580534 | 3.3:+76532402 | None:intergenic |
| CAAGTCAAAGCCTGATGTGT+GGG | 0.580869 | 3.3:+76531701 | None:intergenic |
| ATCCAAGAACTGGAGAATGT+GGG | 0.582057 | 3.3:+76531566 | None:intergenic |
| GGTACTAATTTGTCTGGAGA+AGG | 0.583117 | 3.3:+76532746 | None:intergenic |
| CAGGGCCTATCGCATAGGCA+AGG | 0.584847 | 3.3:+76532039 | None:intergenic |
| GGTACTCCTCAAAATTCTGA+AGG | 0.586729 | 3.3:+76531970 | None:intergenic |
| GGAGCCCTTGCCTATGCGAT+AGG | 0.588549 | 3.3:-76532044 | MS.gene06684:CDS |
| TGAATGTTTGGTCTCCATTG+CGG | 0.588682 | 3.3:-76533218 | MS.gene06684:CDS |
| AGCCAACTTCACATAATACA+TGG | 0.590438 | 3.3:+76533195 | None:intergenic |
| TCATAATCCCATCACAGTAA+GGG | 0.590523 | 3.3:+76531883 | None:intergenic |
| AGCACTGAGCATAAATGGTA+GGG | 0.592192 | 3.3:+76532709 | None:intergenic |
| AAGATCTGGATGAAGGTGCA+TGG | 0.593145 | 3.3:-76532931 | MS.gene06684:CDS |
| AAAATCAGGGCCTATCGCAT+AGG | 0.593832 | 3.3:+76532034 | None:intergenic |
| AGGGCCTATCGCATAGGCAA+GGG | 0.594941 | 3.3:+76532040 | None:intergenic |
| TTTAATCATATGATCATCTG+AGG | 0.597486 | 3.3:+76531302 | None:intergenic |
| GGCCATGTATTATGTGAAGT+TGG | 0.601747 | 3.3:-76533197 | MS.gene06684:CDS |
| ATTGTTATGAAAACAGCCAT+TGG | 0.603401 | 3.3:-76531420 | MS.gene06684:CDS |
| GAGAGCATTATACAATGCCC+TGG | 0.604361 | 3.3:+76533348 | None:intergenic |
| CCACTGCTTGGACTTTGGGG+CGG | 0.604774 | 3.3:-76532652 | MS.gene06684:CDS |
| CATTTCTACAAGCAAAGACC+CGG | 0.606986 | 3.3:+76532099 | None:intergenic |
| GCATGGAATATTGCAATGGC+AGG | 0.607121 | 3.3:-76532914 | MS.gene06684:CDS |
| CCGAGCGTCAAGTACAAGAG+AGG | 0.607157 | 3.3:+76533633 | None:intergenic |
| AAGCAGTGGTGTCTTTAACA+TGG | 0.611461 | 3.3:+76532666 | None:intergenic |
| GATAATGGGACTATTCATCC+GGG | 0.613080 | 3.3:-76532117 | MS.gene06684:CDS |
| CACCAATGCATGAAAACAAG+GGG | 0.613111 | 3.3:+76531808 | None:intergenic |
| CAAGTTTGTGCCGTAACTGT+TGG | 0.613695 | 3.3:-76531948 | MS.gene06684:CDS |
| TCACCAATGCATGAAAACAA+GGG | 0.614256 | 3.3:+76531807 | None:intergenic |
| GCAGGTATTTAGCAAAATCA+GGG | 0.614526 | 3.3:+76532021 | None:intergenic |
| CCAAGGATGAAAACAGAAAG+CGG | 0.615724 | 3.3:-76533732 | MS.gene06684:CDS |
| TATGCTCAGTGCTCTAGTGA+AGG | 0.618237 | 3.3:-76532699 | MS.gene06684:CDS |
| AAGCAAACATGCCTTAACCT+GGG | 0.618785 | 3.3:+76533666 | None:intergenic |
| AATATGTGGGTGATACCACT+GGG | 0.618894 | 3.3:-76533048 | MS.gene06684:CDS |
| CACCCACAGAGAGGATGCTA+CGG | 0.620015 | 3.3:-76532405 | MS.gene06684:CDS |
| TGCAAGAGAACATATTTGGT+AGG | 0.622823 | 3.3:+76532152 | None:intergenic |
| TAGAAATGCCACTGCCCATG+AGG | 0.623921 | 3.3:-76532084 | MS.gene06684:CDS |
| TCCAAGAACTGGAGAATGTG+GGG | 0.625954 | 3.3:+76531567 | None:intergenic |
| CCAAGTCAAAGCCTGATGTG+TGG | 0.626187 | 3.3:+76531700 | None:intergenic |
| CATATATAACATCACAGCAA+AGG | 0.628146 | 3.3:-76533158 | MS.gene06684:CDS |
| TAGATCTCCAACGACACCAA+TGG | 0.633027 | 3.3:+76531404 | None:intergenic |
| GAGAGGATGCTACGGAGTCA+CGG | 0.633129 | 3.3:-76532397 | MS.gene06684:CDS |
| GTAATGTTTCCAACAGCAGA+GGG | 0.633616 | 3.3:+76532972 | None:intergenic |
| GAGAGACCAAGAAACCAGGA+AGG | 0.634178 | 3.3:+76533836 | None:intergenic |
| GAAACTAGTTGCAACACCAA+AGG | 0.635429 | 3.3:+76532311 | None:intergenic |
| AAAGGCTGTTAGGAGTGATG+AGG | 0.635593 | 3.3:-76533140 | MS.gene06684:CDS |
| AAATGCCACTGCCCATGAGG+AGG | 0.637700 | 3.3:-76532081 | MS.gene06684:CDS |
| TCTTGATCAACAACCTCATG+GGG | 0.640057 | 3.3:+76533451 | None:intergenic |
| TGGAATATTGCAATGGCAGG+TGG | 0.641007 | 3.3:-76532911 | MS.gene06684:CDS |
| GGAGATCTAGCTGATACACT+TGG | 0.641148 | 3.3:-76531390 | MS.gene06684:CDS |
| TTGAGCTTCCTCAGAAACAG+TGG | 0.646805 | 3.3:-76533573 | MS.gene06684:CDS |
| TGTAGTCGGCGACATATGCA+GGG | 0.652462 | 3.3:-76531925 | MS.gene06684:CDS |
| GACTCTGGGGTATTTGTGTG+AGG | 0.657648 | 3.3:-76533479 | MS.gene06684:CDS |
| CAAACCAGATTGGAGACAGA+GGG | 0.659105 | 3.3:-76532807 | MS.gene06684:CDS |
| GCCCAGGGTTATGAGGATGT+GGG | 0.661982 | 3.3:-76532485 | MS.gene06684:CDS |
| TCAATGAAAGGCATTACAAG+TGG | 0.666073 | 3.3:+76532842 | None:intergenic |
| GATATCTTGGAAGAATATGT+GGG | 0.670018 | 3.3:-76533061 | MS.gene06684:CDS |
| ACCCTGGGCGAGAAAATACA+GGG | 0.671132 | 3.3:+76532499 | None:intergenic |
| CCGCCCCAAAGTCCAAGCAG+TGG | 0.671300 | 3.3:+76532652 | None:intergenic |
| GGTAGGGCGTGATTAACAAG+AGG | 0.685210 | 3.3:+76532725 | None:intergenic |
| ACCAATGCATGAAAACAAGG+GGG | 0.694702 | 3.3:+76531809 | None:intergenic |
| CCAATGCATGAAAACAAGGG+GGG | 0.695534 | 3.3:+76531810 | None:intergenic |
| TAGTCCGAGCAACTAAACCA+AGG | 0.698790 | 3.3:+76532882 | None:intergenic |
| AAGCAACTTTGGAGACTCTG+GGG | 0.702950 | 3.3:-76533492 | MS.gene06684:CDS |
| AGGTGCATGGAATATTGCAA+TGG | 0.707284 | 3.3:-76532918 | MS.gene06684:CDS |
| TCTCACTGTCACCCACAGAG+AGG | 0.716309 | 3.3:-76532414 | MS.gene06684:CDS |
| CTTGATCAACAACCTCATGG+GGG | 0.733599 | 3.3:+76533452 | None:intergenic |
| AGGTATATCAGAGTCCCCAG+TGG | 0.773955 | 3.3:+76533033 | None:intergenic |
| ATATGTGGGTGATACCACTG+GGG | 0.840024 | 3.3:-76533047 | MS.gene06684:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTGCTATGAAAATTAAAT+TGG | + | chr3.3:76533690-76533709 | None:intergenic | 15.0% |
| !! | TGCTTAATGAAATAAAAACA+AGG | + | chr3.3:76532172-76532191 | None:intergenic | 20.0% |
| !! | TTTGATACTTAAAAATGCAT+TGG | - | chr3.3:76531424-76531443 | MS.gene06684:CDS | 20.0% |
| !!! | CAGTAAGAATTTTATTTACT+TGG | + | chr3.3:76531757-76531776 | None:intergenic | 20.0% |
| ! | TCAAGAAACTTGTAAAATTC+AGG | + | chr3.3:76533186-76533205 | None:intergenic | 25.0% |
| ! | TGAACAATTTCCTGAAAAAA+GGG | + | chr3.3:76532742-76532761 | None:intergenic | 25.0% |
| ! | TTGAACAATTTCCTGAAAAA+AGG | + | chr3.3:76532743-76532762 | None:intergenic | 25.0% |
| ! | TTTAATCATATGATCATCTG+AGG | + | chr3.3:76533883-76533902 | None:intergenic | 25.0% |
| !! | ACATTAACTCTTTGAGAAAT+GGG | - | chr3.3:76533517-76533536 | MS.gene06684:CDS | 25.0% |
| !! | TACATTAACTCTTTGAGAAA+TGG | - | chr3.3:76533516-76533535 | MS.gene06684:CDS | 25.0% |
| !!! | GAGAACTGTAATAATTTGTT+GGG | + | chr3.3:76532614-76532633 | None:intergenic | 25.0% |
| AAAATATTCCCTTACTGTGA+TGG | - | chr3.3:76533291-76533310 | MS.gene06684:CDS | 30.0% | |
| AAATATTCCCTTACTGTGAT+GGG | - | chr3.3:76533292-76533311 | MS.gene06684:CDS | 30.0% | |
| AACATTACTCAAACAAGAAG+AGG | - | chr3.3:76532225-76532244 | MS.gene06684:CDS | 30.0% | |
| AATTGTACTCCAGAATTCAA+TGG | + | chr3.3:76532086-76532105 | None:intergenic | 30.0% | |
| AGAATATTACCAAACCAGAT+TGG | - | chr3.3:76532365-76532384 | MS.gene06684:CDS | 30.0% | |
| ATACTGCAAGAGAACATATT+TGG | + | chr3.3:76533037-76533056 | None:intergenic | 30.0% | |
| ATTGTTATGAAAACAGCCAT+TGG | - | chr3.3:76533762-76533781 | MS.gene06684:CDS | 30.0% | |
| CATATATAACATCACAGCAA+AGG | - | chr3.3:76532024-76532043 | MS.gene06684:CDS | 30.0% | |
| GAAAAACAGAGTGAACTTAT+AGG | - | chr3.3:76532955-76532974 | MS.gene06684:CDS | 30.0% | |
| GATATCTTGGAAGAATATGT+GGG | - | chr3.3:76532121-76532140 | MS.gene06684:CDS | 30.0% | |
| GCATTTCCCTCATTAATAAT+AGG | + | chr3.3:76532592-76532611 | None:intergenic | 30.0% | |
| GTAATATTCTCCTCAATGAA+AGG | + | chr3.3:76532355-76532374 | None:intergenic | 30.0% | |
| TGACAAAGACTGTTGAATTA+AGG | + | chr3.3:76533832-76533851 | None:intergenic | 30.0% | |
| TGATATCTTGGAAGAATATG+TGG | - | chr3.3:76532120-76532139 | MS.gene06684:CDS | 30.0% | |
| TTATATATGTCCTGGATGTA+AGG | + | chr3.3:76532013-76532032 | None:intergenic | 30.0% | |
| TTGATGAATTCTTAAACCCT+TGG | + | chr3.3:76533569-76533588 | None:intergenic | 30.0% | |
| TTTCTTCACAGTTCAATTGT+TGG | - | chr3.3:76532562-76532581 | MS.gene06684:CDS | 30.0% | |
| TTTGAGAAATGGGATATTAG+AGG | - | chr3.3:76533527-76533546 | MS.gene06684:CDS | 30.0% | |
| ! | GGAGAACTGTAATAATTTGT+TGG | + | chr3.3:76532615-76532634 | None:intergenic | 30.0% |
| !! | GGCTAATTTTAGCAATGATA+TGG | - | chr3.3:76531868-76531887 | MS.gene06684:CDS | 30.0% |
| AACAGATATAGCACGATTGA+TGG | + | chr3.3:76533931-76533950 | None:intergenic | 35.0% | |
| AACTTATAGGCCTTCTTTGT+GGG | - | chr3.3:76532968-76532987 | MS.gene06684:CDS | 35.0% | |
| AATAGTGATCCTATCAGTTC+AGG | + | chr3.3:76531635-76531654 | None:intergenic | 35.0% | |
| ACAGTCATTATTCAGAAGCT+AGG | - | chr3.3:76532997-76533016 | MS.gene06684:CDS | 35.0% | |
| ACTTGTAATGCCTTTCATTG+AGG | - | chr3.3:76532342-76532361 | MS.gene06684:CDS | 35.0% | |
| AGCATAAGGAATCAAGATCT+GGG | + | chr3.3:76533595-76533614 | None:intergenic | 35.0% | |
| AGCCAACTTCACATAATACA+TGG | + | chr3.3:76531990-76532009 | None:intergenic | 35.0% | |
| ATCACCAATGCATGAAAACA+AGG | + | chr3.3:76533379-76533398 | None:intergenic | 35.0% | |
| ATTCTTACTGCTGTAGTTCA+AGG | - | chr3.3:76531767-76531786 | MS.gene06684:CDS | 35.0% | |
| CAAGTTGTTGCTAAAATTGC+TGG | - | chr3.3:76531584-76531603 | MS.gene06684:CDS | 35.0% | |
| CAGTATGCTGATCAGATAAT+GGG | - | chr3.3:76533051-76533070 | MS.gene06684:CDS | 35.0% | |
| CAGTCATTATTCAGAAGCTA+GGG | - | chr3.3:76532998-76533017 | MS.gene06684:CDS | 35.0% | |
| CCTGAAAAAAGGGAGTTATA+GGG | + | chr3.3:76532732-76532751 | None:intergenic | 35.0% | |
| CTGAAAAAAGGGAGTTATAG+GGG | + | chr3.3:76532731-76532750 | None:intergenic | 35.0% | |
| CTGTGATGTTATATATGTCC+TGG | + | chr3.3:76532021-76532040 | None:intergenic | 35.0% | |
| GAAACTTGTAAAATTCAGGC+AGG | + | chr3.3:76533182-76533201 | None:intergenic | 35.0% | |
| GATTAAAGAATCTGCCGAAT+GGG | - | chr3.3:76533896-76533915 | MS.gene06684:CDS | 35.0% | |
| GCAGGTATTTAGCAAAATCA+GGG | + | chr3.3:76533164-76533183 | None:intergenic | 35.0% | |
| GGCACACCTATTATTAATGA+GGG | - | chr3.3:76532583-76532602 | MS.gene06684:CDS | 35.0% | |
| GTTCTTGGATAGCATATACA+TGG | - | chr3.3:76533629-76533648 | MS.gene06684:CDS | 35.0% | |
| TAAAAATGCATTGGATGCCA+AGG | - | chr3.3:76531433-76531452 | MS.gene06684:intron | 35.0% | |
| TCACCAATGCATGAAAACAA+GGG | + | chr3.3:76533378-76533397 | None:intergenic | 35.0% | |
| TCATAATCCCATCACAGTAA+GGG | + | chr3.3:76533302-76533321 | None:intergenic | 35.0% | |
| TCCTGAAAAAAGGGAGTTAT+AGG | + | chr3.3:76532733-76532752 | None:intergenic | 35.0% | |
| TCCTGAATTGAAAATACGTC+TGG | - | chr3.3:76531934-76531953 | MS.gene06684:CDS | 35.0% | |
| TGATGAAGAGACTGATATCT+TGG | - | chr3.3:76532108-76532127 | MS.gene06684:CDS | 35.0% | |
| TGATTAAAGAATCTGCCGAA+TGG | - | chr3.3:76533895-76533914 | MS.gene06684:CDS | 35.0% | |
| TGCAAGAGAACATATTTGGT+AGG | + | chr3.3:76533033-76533052 | None:intergenic | 35.0% | |
| TGGCACACCTATTATTAATG+AGG | - | chr3.3:76532582-76532601 | MS.gene06684:CDS | 35.0% | |
| TGTATATGCTATCCAAGAAC+TGG | + | chr3.3:76533629-76533648 | None:intergenic | 35.0% | |
| TTGAATGCTCAATCCATTGA+CGG | - | chr3.3:76531272-76531291 | MS.gene06684:CDS | 35.0% | |
| ! | ACTAGTTTCTGTCATCATGA+TGG | - | chr3.3:76532885-76532904 | MS.gene06684:CDS | 35.0% |
| ! | GATTGACCTTCAGAATTTTG+AGG | - | chr3.3:76533206-76533225 | MS.gene06684:CDS | 35.0% |
| ! | GGATATTAGAGGCATATTCT+GGG | - | chr3.3:76533538-76533557 | MS.gene06684:CDS | 35.0% |
| !! | ACAAGAGGTACTAATTTGTC+TGG | + | chr3.3:76532445-76532464 | None:intergenic | 35.0% |
| !! | AGATAATGGGACTATTCATC+CGG | - | chr3.3:76533064-76533083 | MS.gene06684:CDS | 35.0% |
| !! | TCAATGAAAGGCATTACAAG+TGG | + | chr3.3:76532343-76532362 | None:intergenic | 35.0% |
| !!! | CATTGACTTTTCTTACTGCA+GGG | - | chr3.3:76533734-76533753 | MS.gene06684:CDS | 35.0% |
| !!! | TCATTGACTTTTCTTACTGC+AGG | - | chr3.3:76533733-76533752 | MS.gene06684:CDS | 35.0% |
| AACAGATGAAACAGCTCCTT+TGG | - | chr3.3:76532855-76532874 | MS.gene06684:CDS | 40.0% | |
| AAGCAAACATGCCTTAACCT+GGG | + | chr3.3:76531519-76531538 | None:intergenic | 40.0% | |
| AAGCAGTGGTGTCTTTAACA+TGG | + | chr3.3:76532519-76532538 | None:intergenic | 40.0% | |
| AATATGTGGGTGATACCACT+GGG | - | chr3.3:76532134-76532153 | MS.gene06684:CDS | 40.0% | |
| ACAAGAAGAGGATCAAGATC+TGG | - | chr3.3:76532237-76532256 | MS.gene06684:CDS | 40.0% | |
| ACCAATGCATGAAAACAAGG+GGG | + | chr3.3:76533376-76533395 | None:intergenic | 40.0% | |
| AGAAAGTCTTCGGCAATTTC+AGG | - | chr3.3:76531316-76531335 | MS.gene06684:CDS | 40.0% | |
| AGCATGCTGAAGAAAGTCTT+CGG | - | chr3.3:76531306-76531325 | MS.gene06684:CDS | 40.0% | |
| AGCCTTTCTCAGCAACATTA+GGG | + | chr3.3:76532657-76532676 | None:intergenic | 40.0% | |
| AGGTGCATGGAATATTGCAA+TGG | - | chr3.3:76532264-76532283 | MS.gene06684:CDS | 40.0% | |
| AGTAATGTTTCCAACAGCAG+AGG | + | chr3.3:76532214-76532233 | None:intergenic | 40.0% | |
| ATCCAAGAACTGGAGAATGT+GGG | + | chr3.3:76533619-76533638 | None:intergenic | 40.0% | |
| ATGTTAAAGACACCACTGCT+TGG | - | chr3.3:76532518-76532537 | MS.gene06684:CDS | 40.0% | |
| CAAGGATGAAAACAGAAAGC+GGG | - | chr3.3:76531451-76531470 | MS.gene06684:intron | 40.0% | |
| CACCAATGCATGAAAACAAG+GGG | + | chr3.3:76533377-76533396 | None:intergenic | 40.0% | |
| CATTTCTACAAGCAAAGACC+CGG | + | chr3.3:76533086-76533105 | None:intergenic | 40.0% | |
| CCAAGGATGAAAACAGAAAG+CGG | - | chr3.3:76531450-76531469 | MS.gene06684:intron | 40.0% | |
| GAAACTAGTTGCAACACCAA+AGG | + | chr3.3:76532874-76532893 | None:intergenic | 40.0% | |
| GAACTTATAGGCCTTCTTTG+TGG | - | chr3.3:76532967-76532986 | MS.gene06684:CDS | 40.0% | |
| GAGCATAAGGAATCAAGATC+TGG | + | chr3.3:76533596-76533615 | None:intergenic | 40.0% | |
| GCAGTATGCTGATCAGATAA+TGG | - | chr3.3:76533050-76533069 | MS.gene06684:CDS | 40.0% | |
| GGCAGGTATTTAGCAAAATC+AGG | + | chr3.3:76533165-76533184 | None:intergenic | 40.0% | |
| GGCCATGTATTATGTGAAGT+TGG | - | chr3.3:76531985-76532004 | MS.gene06684:CDS | 40.0% | |
| GGTACTCCTCAAAATTCTGA+AGG | + | chr3.3:76533215-76533234 | None:intergenic | 40.0% | |
| GGTGATATAGCACTAGCTAT+AGG | - | chr3.3:76533393-76533412 | MS.gene06684:CDS | 40.0% | |
| GTAATGTTTCCAACAGCAGA+GGG | + | chr3.3:76532213-76532232 | None:intergenic | 40.0% | |
| GTATCAAACCTGCCAACTTT+CGG | + | chr3.3:76531412-76531431 | None:intergenic | 40.0% | |
| GTCATAATCCCATCACAGTA+AGG | + | chr3.3:76533303-76533322 | None:intergenic | 40.0% | |
| GTCTTGATCAACAACCTCAT+GGG | + | chr3.3:76531735-76531754 | None:intergenic | 40.0% | |
| GTGTCTTTAACATGGTTGCT+TGG | + | chr3.3:76532511-76532530 | None:intergenic | 40.0% | |
| GTTTCTTGGTCTCTCTTTCT+GGG | - | chr3.3:76531354-76531373 | MS.gene06684:CDS | 40.0% | |
| TACTCCAGAATTCAATGGCT+TGG | + | chr3.3:76532081-76532100 | None:intergenic | 40.0% | |
| TATCCAAGAACTGGAGAATG+TGG | + | chr3.3:76533620-76533639 | None:intergenic | 40.0% | |
| TCATGTCAAGCAAGCAACTT+TGG | - | chr3.3:76531679-76531698 | MS.gene06684:CDS | 40.0% | |
| TCTTGATCAACAACCTCATG+GGG | + | chr3.3:76531734-76531753 | None:intergenic | 40.0% | |
| TGAAAACAGAAAGCGGGAAT+TGG | - | chr3.3:76531457-76531476 | MS.gene06684:intron | 40.0% | |
| TGAATGTTTGGTCTCCATTG+CGG | - | chr3.3:76531964-76531983 | MS.gene06684:CDS | 40.0% | |
| TTTCTTGGTCTCTCTTTCTG+GGG | - | chr3.3:76531355-76531374 | MS.gene06684:CDS | 40.0% | |
| ! | AGCACTGAGCATAAATGGTA+GGG | + | chr3.3:76532476-76532495 | None:intergenic | 40.0% |
| ! | GCCAGACGTATTTTCAATTC+AGG | + | chr3.3:76531938-76531957 | None:intergenic | 40.0% |
| ! | GGGATATTAGAGGCATATTC+TGG | - | chr3.3:76533537-76533556 | MS.gene06684:CDS | 40.0% |
| ! | GGTACTAATTTGTCTGGAGA+AGG | + | chr3.3:76532439-76532458 | None:intergenic | 40.0% |
| ! | TCTGGCAGCTTTTGAATGTT+TGG | - | chr3.3:76531952-76531971 | MS.gene06684:CDS | 40.0% |
| !! | ACTAGAGCACTGAGCATAAA+TGG | + | chr3.3:76532481-76532500 | None:intergenic | 40.0% |
| !! | CATATTCTGGGATCTTCCAA+GGG | - | chr3.3:76533550-76533569 | MS.gene06684:CDS | 40.0% |
| !! | GATAATGGGACTATTCATCC+GGG | - | chr3.3:76533065-76533084 | MS.gene06684:CDS | 40.0% |
| !! | GTATGCATTTGGCTCTATCT+TGG | - | chr3.3:76532408-76532427 | MS.gene06684:CDS | 40.0% |
| !!! | CCCTATAACTCCCTTTTTTC+AGG | - | chr3.3:76532729-76532748 | MS.gene06684:CDS | 40.0% |
| AAAATCAGGGCCTATCGCAT+AGG | + | chr3.3:76533151-76533170 | None:intergenic | 45.0% | |
| AAACAGTGGCCTGAACTGAT+AGG | - | chr3.3:76531623-76531642 | MS.gene06684:CDS | 45.0% | |
| AAAGGCTGTTAGGAGTGATG+AGG | - | chr3.3:76532042-76532061 | MS.gene06684:CDS | 45.0% | |
| AATGTTGCTGAGAAAGGCTG+TGG | - | chr3.3:76532658-76532677 | MS.gene06684:CDS | 45.0% | |
| ACATCACAGCAAAGGCTGTT+AGG | - | chr3.3:76532032-76532051 | MS.gene06684:CDS | 45.0% | |
| AGTTCTCCTTCAGAGCATGA+AGG | - | chr3.3:76532627-76532646 | MS.gene06684:CDS | 45.0% | |
| ATATGTGGGTGATACCACTG+GGG | - | chr3.3:76532135-76532154 | MS.gene06684:CDS | 45.0% | |
| CAAACCAGATTGGAGACAGA+GGG | - | chr3.3:76532375-76532394 | MS.gene06684:CDS | 45.0% | |
| CAACAGTTACGGCACAAACT+TGG | + | chr3.3:76533236-76533255 | None:intergenic | 45.0% | |
| CAAGTCAAAGCCTGATGTGT+GGG | + | chr3.3:76533484-76533503 | None:intergenic | 45.0% | |
| CAAGTTTGTGCCGTAACTGT+TGG | - | chr3.3:76533234-76533253 | MS.gene06684:CDS | 45.0% | |
| CACATAATACATGGCCGCAA+TGG | + | chr3.3:76531981-76532000 | None:intergenic | 45.0% | |
| CAGCCTTTCTCAGCAACATT+AGG | + | chr3.3:76532658-76532677 | None:intergenic | 45.0% | |
| CATGCCTTGGTTTAGTTGCT+CGG | - | chr3.3:76532296-76532315 | MS.gene06684:CDS | 45.0% | |
| CCAATGCATGAAAACAAGGG+GGG | + | chr3.3:76533375-76533394 | None:intergenic | 45.0% | |
| CTCTCCAAGCCATTGAATTC+TGG | - | chr3.3:76532074-76532093 | MS.gene06684:CDS | 45.0% | |
| CTTACGTACAGTTCCGTCAA+TGG | + | chr3.3:76531288-76531307 | None:intergenic | 45.0% | |
| CTTGATCAACAACCTCATGG+GGG | + | chr3.3:76531733-76531752 | None:intergenic | 45.0% | |
| GAAAGAGAGACCAAGAAACC+AGG | + | chr3.3:76531353-76531372 | None:intergenic | 45.0% | |
| GAAGCAAACATGCCTTAACC+TGG | + | chr3.3:76531520-76531539 | None:intergenic | 45.0% | |
| GAATATGTGGGTGATACCAC+TGG | - | chr3.3:76532133-76532152 | MS.gene06684:CDS | 45.0% | |
| GAGGATCAAGATCTGGATGA+AGG | - | chr3.3:76532244-76532263 | MS.gene06684:CDS | 45.0% | |
| GATACACTTGGAAGCAATGC+TGG | - | chr3.3:76533804-76533823 | MS.gene06684:CDS | 45.0% | |
| GCAAAACCTTCCTGGTTTCT+TGG | - | chr3.3:76531340-76531359 | MS.gene06684:CDS | 45.0% | |
| GCATGGAATATTGCAATGGC+AGG | - | chr3.3:76532268-76532287 | MS.gene06684:CDS | 45.0% | |
| GGAGATCTAGCTGATACACT+TGG | - | chr3.3:76533792-76533811 | MS.gene06684:CDS | 45.0% | |
| GGTCTTGATCAACAACCTCA+TGG | + | chr3.3:76531736-76531755 | None:intergenic | 45.0% | |
| GGTTTCTTGGTCTCTCTTTC+TGG | - | chr3.3:76531353-76531372 | MS.gene06684:CDS | 45.0% | |
| GTCCCTAATGTTGCTGAGAA+AGG | - | chr3.3:76532652-76532671 | MS.gene06684:CDS | 45.0% | |
| TAATGCTCTCGAATTTGCGC+AGG | - | chr3.3:76531847-76531866 | MS.gene06684:CDS | 45.0% | |
| TAGATCTCCAACGACACCAA+TGG | + | chr3.3:76533781-76533800 | None:intergenic | 45.0% | |
| TAGTCCGAGCAACTAAACCA+AGG | + | chr3.3:76532303-76532322 | None:intergenic | 45.0% | |
| TATGCTCAGTGCTCTAGTGA+AGG | - | chr3.3:76532483-76532502 | MS.gene06684:CDS | 45.0% | |
| TCCAAGAACTGGAGAATGTG+GGG | + | chr3.3:76533618-76533637 | None:intergenic | 45.0% | |
| TGGAATATTGCAATGGCAGG+TGG | - | chr3.3:76532271-76532290 | MS.gene06684:CDS | 45.0% | |
| TTGAGCTTCCTCAGAAACAG+TGG | - | chr3.3:76531609-76531628 | MS.gene06684:CDS | 45.0% | |
| TTTCAGGAGCAAAACCTTCC+TGG | - | chr3.3:76531332-76531351 | MS.gene06684:CDS | 45.0% | |
| ! | AAGATCTGGATGAAGGTGCA+TGG | - | chr3.3:76532251-76532270 | MS.gene06684:CDS | 45.0% |
| ! | AAGCAACTTTGGAGACTCTG+GGG | - | chr3.3:76531690-76531709 | MS.gene06684:CDS | 45.0% |
| ! | CAAGCAACTTTGGAGACTCT+GGG | - | chr3.3:76531689-76531708 | MS.gene06684:CDS | 45.0% |
| ! | CCGCTTTCTGTTTTCATCCT+TGG | + | chr3.3:76531453-76531472 | None:intergenic | 45.0% |
| !! | AAAACAGCCATTGGTGTCGT+TGG | - | chr3.3:76533771-76533790 | MS.gene06684:CDS | 45.0% |
| !! | ACCAGTTGATAGCCGAAAGT+TGG | - | chr3.3:76531397-76531416 | MS.gene06684:CDS | 45.0% |
| !! | CATTTGGCTCTATCTTGGAG+GGG | - | chr3.3:76532413-76532432 | MS.gene06684:CDS | 45.0% |
| !! | GAGAGCATTATACAATGCCC+TGG | + | chr3.3:76531837-76531856 | None:intergenic | 45.0% |
| !! | GAGCACTGAGCATAAATGGT+AGG | + | chr3.3:76532477-76532496 | None:intergenic | 45.0% |
| !! | GCATATTCTGGGATCTTCCA+AGG | - | chr3.3:76533549-76533568 | MS.gene06684:CDS | 45.0% |
| !! | GCATTTGGCTCTATCTTGGA+GGG | - | chr3.3:76532412-76532431 | MS.gene06684:CDS | 45.0% |
| !! | TGCATTTGGCTCTATCTTGG+AGG | - | chr3.3:76532411-76532430 | MS.gene06684:CDS | 45.0% |
| AACCCTGGGCGAGAAAATAC+AGG | + | chr3.3:76532687-76532706 | None:intergenic | 50.0% | |
| AAGGGCTCCAATAGCTAGCA+TGG | + | chr3.3:76533127-76533146 | None:intergenic | 50.0% | |
| ACACCACTGCTTGGACTTTG+GGG | - | chr3.3:76532527-76532546 | MS.gene06684:CDS | 50.0% | |
| ACCCTGGGCGAGAAAATACA+GGG | + | chr3.3:76532686-76532705 | None:intergenic | 50.0% | |
| AGACACCACTGCTTGGACTT+TGG | - | chr3.3:76532525-76532544 | MS.gene06684:CDS | 50.0% | |
| AGGTATATCAGAGTCCCCAG+TGG | + | chr3.3:76532152-76532171 | None:intergenic | 50.0% | |
| CCAAACCAGATTGGAGACAG+AGG | - | chr3.3:76532374-76532393 | MS.gene06684:CDS | 50.0% | |
| CCAAGTCAAAGCCTGATGTG+TGG | + | chr3.3:76533485-76533504 | None:intergenic | 50.0% | |
| CCTCTCTTGTACTTGACGCT+CGG | - | chr3.3:76531549-76531568 | MS.gene06684:CDS | 50.0% | |
| CCTCTGTCTCCAATCTGGTT+TGG | + | chr3.3:76532377-76532396 | None:intergenic | 50.0% | |
| CTGTCAAGCACCCACAAAGA+AGG | + | chr3.3:76532981-76533000 | None:intergenic | 50.0% | |
| GAAGCAGCGACGTATGCATT+TGG | - | chr3.3:76532397-76532416 | MS.gene06684:CDS | 50.0% | |
| GACACCACTGCTTGGACTTT+GGG | - | chr3.3:76532526-76532545 | MS.gene06684:CDS | 50.0% | |
| GAGAGACCAAGAAACCAGGA+AGG | + | chr3.3:76531349-76531368 | None:intergenic | 50.0% | |
| GCCAACTTTCGGCTATCAAC+TGG | + | chr3.3:76531401-76531420 | None:intergenic | 50.0% | |
| GCCGACTACACCAACAGTTA+CGG | + | chr3.3:76533247-76533266 | None:intergenic | 50.0% | |
| GCCGTAACTGTTGGTGTAGT+CGG | - | chr3.3:76533243-76533262 | MS.gene06684:CDS | 50.0% | |
| GCTTGACATGAGCAGGAACT+TGG | + | chr3.3:76531670-76531689 | None:intergenic | 50.0% | |
| GGACATCCTTCATGCTCTGA+AGG | + | chr3.3:76532636-76532655 | None:intergenic | 50.0% | |
| GGTAGGGCGTGATTAACAAG+AGG | + | chr3.3:76532460-76532479 | None:intergenic | 50.0% | |
| GGTTTAGTTGCTCGGACTAC+TGG | - | chr3.3:76532304-76532323 | MS.gene06684:CDS | 50.0% | |
| GTCATTAGACACTGCAGCGA+AGG | - | chr3.3:76531493-76531512 | MS.gene06684:intron | 50.0% | |
| GTTGCTTGCTTGACATGAGC+AGG | + | chr3.3:76531677-76531696 | None:intergenic | 50.0% | |
| TAGAAATGCCACTGCCCATG+AGG | - | chr3.3:76533098-76533117 | MS.gene06684:CDS | 50.0% | |
| TCCCACATCCTCATAACCCT+GGG | + | chr3.3:76532701-76532720 | None:intergenic | 50.0% | |
| TCCCCACATTCTCCAGTTCT+TGG | - | chr3.3:76533614-76533633 | MS.gene06684:CDS | 50.0% | |
| TCTGTGGGTGACAGTGAGAA+GGG | + | chr3.3:76532767-76532786 | None:intergenic | 50.0% | |
| TGTAGTCGGCGACATATGCA+GGG | - | chr3.3:76533257-76533276 | MS.gene06684:CDS | 50.0% | |
| TTCCCACATCCTCATAACCC+TGG | + | chr3.3:76532702-76532721 | None:intergenic | 50.0% | |
| ! | AGCACGATTGATGGCCAACT+TGG | + | chr3.3:76533922-76533941 | None:intergenic | 50.0% |
| ! | AGCGGGAATTGGTTCAGAGA+TGG | - | chr3.3:76531468-76531487 | MS.gene06684:intron | 50.0% |
| ! | CCACACATCAGGCTTTGACT+TGG | - | chr3.3:76533482-76533501 | MS.gene06684:CDS | 50.0% |
| ! | GAAGTTGGCTCCTTACATCC+AGG | - | chr3.3:76532000-76532019 | MS.gene06684:CDS | 50.0% |
| ! | GCAAGCAACTTTGGAGACTC+TGG | - | chr3.3:76531688-76531707 | MS.gene06684:CDS | 50.0% |
| ! | TCAATGGCTTGGAGAGCAAC+AGG | + | chr3.3:76532070-76532089 | None:intergenic | 50.0% |
| ! | TGGAGAATGTGGGGAGCATA+AGG | + | chr3.3:76533609-76533628 | None:intergenic | 50.0% |
| ! | TTTTCTCGCCCAGGGTTATG+AGG | - | chr3.3:76532690-76532709 | MS.gene06684:CDS | 50.0% |
| !! | AGTTCAGGCCACTGTTTCTG+AGG | + | chr3.3:76531620-76531639 | None:intergenic | 50.0% |
| !! | GACTCTGGGGTATTTGTGTG+AGG | - | chr3.3:76531703-76531722 | MS.gene06684:CDS | 50.0% |
| !! | GTTGATAGCCGAAAGTTGGC+AGG | - | chr3.3:76531401-76531420 | MS.gene06684:CDS | 50.0% |
| !!! | CCCCCCTTGTTTTCATGCAT+TGG | - | chr3.3:76533372-76533391 | MS.gene06684:CDS | 50.0% |
| AAATGCCACTGCCCATGAGG+AGG | - | chr3.3:76533101-76533120 | MS.gene06684:CDS | 55.0% | |
| ACAAGGGGGGCTTCACAGAA+CGG | + | chr3.3:76533362-76533381 | None:intergenic | 55.0% | |
| ACTCCGTAGCATCCTCTCTG+TGG | + | chr3.3:76532783-76532802 | None:intergenic | 55.0% | |
| AGCTAGCATGGCCTCCTCAT+GGG | + | chr3.3:76533115-76533134 | None:intergenic | 55.0% | |
| AGGGCCTATCGCATAGGCAA+GGG | + | chr3.3:76533145-76533164 | None:intergenic | 55.0% | |
| ATCTGCCGAATGGGCCAAGT+TGG | - | chr3.3:76533905-76533924 | MS.gene06684:CDS | 55.0% | |
| ATGGCAGGTGGTACATGCCT+TGG | - | chr3.3:76532283-76532302 | MS.gene06684:CDS | 55.0% | |
| CACCCACAGAGAGGATGCTA+CGG | - | chr3.3:76532777-76532796 | MS.gene06684:CDS | 55.0% | |
| CCGAGCGTCAAGTACAAGAG+AGG | + | chr3.3:76531552-76531571 | None:intergenic | 55.0% | |
| CTCCGTAGCATCCTCTCTGT+GGG | + | chr3.3:76532782-76532801 | None:intergenic | 55.0% | |
| CTCTGTGGGTGACAGTGAGA+AGG | + | chr3.3:76532768-76532787 | None:intergenic | 55.0% | |
| GAGAGGATGCTACGGAGTCA+CGG | - | chr3.3:76532785-76532804 | MS.gene06684:CDS | 55.0% | |
| GAGATGTACGCCCACACATC+AGG | - | chr3.3:76533471-76533490 | MS.gene06684:CDS | 55.0% | |
| GAGGAGGCCATGCTAGCTAT+TGG | - | chr3.3:76533117-76533136 | MS.gene06684:CDS | 55.0% | |
| GATGGCCAACTTGGCCCATT+CGG | + | chr3.3:76533913-76533932 | None:intergenic | 55.0% | |
| GCCCAGGGTTATGAGGATGT+GGG | - | chr3.3:76532697-76532716 | MS.gene06684:CDS | 55.0% | |
| GCTTCCCTCTGTCTCCAATC+TGG | + | chr3.3:76532382-76532401 | None:intergenic | 55.0% | |
| GTGTAGTCGGCGACATATGC+AGG | - | chr3.3:76533256-76533275 | MS.gene06684:CDS | 55.0% | |
| TAGCTAGCATGGCCTCCTCA+TGG | + | chr3.3:76533116-76533135 | None:intergenic | 55.0% | |
| TCTCACTGTCACCCACAGAG+AGG | - | chr3.3:76532768-76532787 | MS.gene06684:CDS | 55.0% | |
| ! | AGCCCTGTATTTTCTCGCCC+AGG | - | chr3.3:76532681-76532700 | MS.gene06684:CDS | 55.0% |
| ! | GCCCTGTATTTTCTCGCCCA+GGG | - | chr3.3:76532682-76532701 | MS.gene06684:CDS | 55.0% |
| !! | ATGTCAGACTTGCTGCTGCC+AGG | - | chr3.3:76531816-76531835 | MS.gene06684:CDS | 55.0% |
| !! | CGACATATGCAGGGCATTGG+AGG | - | chr3.3:76533266-76533285 | MS.gene06684:CDS | 55.0% |
| !! | TGTCAGACTTGCTGCTGCCA+GGG | - | chr3.3:76531817-76531836 | MS.gene06684:CDS | 55.0% |
| AACAGCAGAGGGACGAGTGC+AGG | + | chr3.3:76532202-76532221 | None:intergenic | 60.0% | |
| CAGAGGGACGAGTGCAGGAA+GGG | + | chr3.3:76532197-76532216 | None:intergenic | 60.0% | |
| CAGGGCCTATCGCATAGGCA+AGG | + | chr3.3:76533146-76533165 | None:intergenic | 60.0% | |
| CGCCCAGGGTTATGAGGATG+TGG | - | chr3.3:76532696-76532715 | MS.gene06684:CDS | 60.0% | |
| CGGCGACATATGCAGGGCAT+TGG | - | chr3.3:76533263-76533282 | MS.gene06684:CDS | 60.0% | |
| GGAGCCCTTGCCTATGCGAT+AGG | - | chr3.3:76533138-76533157 | MS.gene06684:CDS | 60.0% | |
| GTGTGAGGAAGTCCCCCATG+AGG | - | chr3.3:76531718-76531737 | MS.gene06684:CDS | 60.0% | |
| TGCACTCGTCCCTCTGCTGT+TGG | - | chr3.3:76532201-76532220 | MS.gene06684:CDS | 60.0% | |
| TGCAGCGAAGGCCCAGGTTA+AGG | - | chr3.3:76531505-76531524 | MS.gene06684:intron | 60.0% | |
| ! | CCACTGCTTGGACTTTGGGG+CGG | - | chr3.3:76532530-76532549 | MS.gene06684:CDS | 60.0% |
| AGACACTGCAGCGAAGGCCC+AGG | - | chr3.3:76531499-76531518 | MS.gene06684:intron | 65.0% | |
| CATGGCCTCCTCATGGGCAG+TGG | + | chr3.3:76533109-76533128 | None:intergenic | 65.0% | |
| CCGCCCCAAAGTCCAAGCAG+TGG | + | chr3.3:76532533-76532552 | None:intergenic | 65.0% | |
| GCAGAGGGACGAGTGCAGGA+AGG | + | chr3.3:76532198-76532217 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 76531251 | 76533953 | 76531251 | ID=MS.gene06684 |
| chr3.3 | mRNA | 76531251 | 76533953 | 76531251 | ID=MS.gene06684.t1;Parent=MS.gene06684 |
| chr3.3 | exon | 76531543 | 76533953 | 76531543 | ID=MS.gene06684.t1.exon1;Parent=MS.gene06684.t1 |
| chr3.3 | CDS | 76531543 | 76533953 | 76531543 | ID=cds.MS.gene06684.t1;Parent=MS.gene06684.t1 |
| chr3.3 | exon | 76531251 | 76531449 | 76531251 | ID=MS.gene06684.t1.exon2;Parent=MS.gene06684.t1 |
| chr3.3 | CDS | 76531251 | 76531449 | 76531251 | ID=cds.MS.gene06684.t1;Parent=MS.gene06684.t1 |
| Gene Sequence |
| Protein sequence |
