Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059035.t1 | AES65076.2 | 96.1 | 228 | 7 | 2 | 1 | 227 | 1 | 227 | 2.00E-114 | 421.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059035.t1 | Q8VXU6 | 50.6 | 235 | 95 | 8 | 1 | 226 | 1 | 223 | 6.8e-50 | 198.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059035.t1 | G7IMY1 | 96.1 | 228 | 7 | 2 | 1 | 227 | 1 | 227 | 1.5e-114 | 421.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059035 | MS.gene072149 | 0.810703 | 1.01E-50 | -1.69E-46 |
| MS.gene059035 | MS.gene55200 | 0.824468 | 7.94E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059035.t1 | MTR_2g035070 | 96.930 | 228 | 5 | 2 | 1 | 227 | 1 | 227 | 4.92e-162 | 447 |
| MS.gene059035.t1 | MTR_1g083780 | 50.463 | 216 | 79 | 9 | 20 | 227 | 24 | 219 | 7.68e-60 | 187 |
| MS.gene059035.t1 | MTR_7g112400 | 49.474 | 95 | 43 | 1 | 20 | 109 | 32 | 126 | 8.74e-30 | 108 |
| MS.gene059035.t1 | MTR_7g109145 | 32.558 | 215 | 120 | 4 | 13 | 227 | 4 | 193 | 4.02e-22 | 90.1 |
| MS.gene059035.t1 | MTR_7g112403 | 48.000 | 125 | 57 | 4 | 109 | 227 | 1 | 123 | 3.17e-20 | 83.2 |
| MS.gene059035.t1 | MTR_7g109145 | 34.615 | 156 | 90 | 3 | 75 | 227 | 3 | 149 | 4.14e-18 | 78.2 |
| MS.gene059035.t1 | MTR_7g109145 | 34.459 | 148 | 85 | 3 | 83 | 227 | 3 | 141 | 7.03e-14 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059035.t1 | AT5G49230 | 48.069 | 233 | 93 | 8 | 1 | 227 | 1 | 211 | 1.98e-55 | 176 |
| MS.gene059035.t1 | AT3G05700 | 44.958 | 238 | 105 | 9 | 1 | 227 | 1 | 223 | 5.38e-52 | 168 |
| MS.gene059035.t1 | AT5G49230 | 46.352 | 233 | 92 | 8 | 1 | 227 | 1 | 206 | 1.15e-51 | 166 |
| MS.gene059035.t1 | AT3G06760 | 50.000 | 210 | 88 | 7 | 23 | 227 | 27 | 224 | 1.73e-51 | 166 |
| MS.gene059035.t1 | AT5G26990 | 44.351 | 239 | 104 | 9 | 1 | 227 | 1 | 222 | 5.03e-51 | 165 |
| MS.gene059035.t1 | AT3G05700 | 45.408 | 196 | 82 | 8 | 1 | 186 | 1 | 181 | 4.72e-43 | 144 |
| MS.gene059035.t1 | AT1G56280 | 42.723 | 213 | 88 | 7 | 20 | 225 | 14 | 199 | 9.82e-42 | 140 |
| MS.gene059035.t1 | AT1G56280 | 44.388 | 196 | 78 | 7 | 37 | 225 | 34 | 205 | 1.33e-38 | 133 |
| MS.gene059035.t1 | AT4G02200 | 39.062 | 192 | 92 | 5 | 39 | 224 | 37 | 209 | 9.86e-33 | 118 |
| MS.gene059035.t1 | AT3G06760 | 41.629 | 221 | 100 | 8 | 23 | 227 | 27 | 234 | 1.68e-32 | 118 |
| MS.gene059035.t1 | AT4G02200 | 38.043 | 184 | 89 | 5 | 39 | 216 | 37 | 201 | 2.65e-29 | 109 |
| MS.gene059035.t1 | AT4G02200 | 36.408 | 206 | 92 | 6 | 39 | 224 | 37 | 223 | 1.22e-28 | 108 |
| MS.gene059035.t1 | AT1G02750 | 35.714 | 196 | 98 | 6 | 39 | 226 | 41 | 216 | 1.67e-27 | 105 |
| MS.gene059035.t1 | AT1G02750 | 33.862 | 189 | 95 | 6 | 39 | 226 | 41 | 200 | 9.52e-21 | 86.7 |
Find 48 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGGGTTGCATTCTCTTCT+TGG | 0.230781 | 2.4:-56101521 | MS.gene059035:CDS |
| GTGGTGGTGGTGATGATTTA+AGG | 0.255964 | 2.4:-56103270 | MS.gene059035:CDS |
| AGAAAAGAGTTGAGGGAAGC+AGG | 0.284470 | 2.4:-56101539 | MS.gene059035:CDS |
| TCATAATCTTCAGCACAAAA+AGG | 0.288334 | 2.4:+56103232 | None:intergenic |
| AAGTTTACGTGCAGCGTAAA+AGG | 0.305767 | 2.4:-56101598 | MS.gene059035:CDS |
| AAAGAAACCAACTTTCAAAA+AGG | 0.347692 | 2.4:+56102091 | None:intergenic |
| ACAGCTTCGTCACCAACAAC+TGG | 0.357688 | 2.4:+56101431 | None:intergenic |
| AACGATTGCAACAAAGTATC+AGG | 0.362978 | 2.4:+56101464 | None:intergenic |
| TTTCGAGCTATCGTTTACTA+TGG | 0.363939 | 2.4:+56101376 | None:intergenic |
| TTCAGGTGTGTCCTGCTTGT+GGG | 0.376343 | 2.4:-56102178 | MS.gene059035:intron |
| CAAAGTATCAGGTTCGGAAT+TGG | 0.385398 | 2.4:+56101475 | None:intergenic |
| TGGTGGTGGTGATGATTTAA+GGG | 0.397394 | 2.4:-56103269 | MS.gene059035:CDS |
| GTTTACTATGGCAGCTTCAA+TGG | 0.397661 | 2.4:+56101388 | None:intergenic |
| GAAAAGAGTTGAGGGAAGCA+GGG | 0.405227 | 2.4:-56101538 | MS.gene059035:CDS |
| CGCCGTTACTATTCTCGATC+CGG | 0.436721 | 2.4:-56103427 | MS.gene059035:intron |
| AAAACATGGACTCTGATTCA+TGG | 0.453838 | 2.4:-56103477 | None:intergenic |
| GGGTTGCATTCTCTTCTTGG+AGG | 0.460766 | 2.4:-56101518 | MS.gene059035:CDS |
| TTTCAGGTGTGTCCTGCTTG+TGG | 0.467996 | 2.4:-56102179 | MS.gene059035:intron |
| CGAAGGTTTGATTTCGTGCA+AGG | 0.485172 | 2.4:-56100823 | MS.gene059035:CDS |
| GTTATTTAGAAAAGAGTTGA+GGG | 0.489200 | 2.4:-56101546 | MS.gene059035:CDS |
| CATCCTCTTCAAGCTAGCAC+TGG | 0.492114 | 2.4:-56103175 | MS.gene059035:CDS |
| GATGCTGAACCTGGTGGTGG+TGG | 0.514579 | 2.4:-56103283 | MS.gene059035:CDS |
| ATCCTCTTCAAGCTAGCACT+GGG | 0.517203 | 2.4:-56103174 | MS.gene059035:CDS |
| AGTATCAGGTTCGGAATTGG+AGG | 0.520777 | 2.4:+56101478 | None:intergenic |
| TTATAACTCATCATCAAGAA+TGG | 0.527350 | 2.4:+56100786 | None:intergenic |
| CGTTATTTAGAAAAGAGTTG+AGG | 0.531210 | 2.4:-56101547 | MS.gene059035:CDS |
| TAGCTCGAAAGATGATTTCG+TGG | 0.542543 | 2.4:-56101363 | MS.gene059035:CDS |
| TTGCAACAAAGTATCAGGTT+CGG | 0.543065 | 2.4:+56101469 | None:intergenic |
| CTTCTCTACTCGATCCTCGT+CGG | 0.568903 | 2.4:+56100849 | None:intergenic |
| GGAAATGATGATGCTGAACC+TGG | 0.576479 | 2.4:-56103292 | MS.gene059035:CDS |
| CGAAAGATGATTTCGTGGAA+AGG | 0.582410 | 2.4:-56101358 | MS.gene059035:intron |
| ACCCCAGTGCTAGCTTGAAG+AGG | 0.589675 | 2.4:+56103172 | None:intergenic |
| TTCGGAATTGGAGGAAGCTG+TGG | 0.593717 | 2.4:+56101487 | None:intergenic |
| GAAGGTTTGATTTCGTGCAA+GGG | 0.604633 | 2.4:-56100822 | MS.gene059035:CDS |
| CGTAAAAGGAGGGTGAGGAA+AGG | 0.608256 | 2.4:-56101584 | MS.gene059035:CDS |
| CAGCTTCGTCACCAACAACT+GGG | 0.608504 | 2.4:+56101432 | None:intergenic |
| TTTACGTGCAGCGTAAAAGG+AGG | 0.609185 | 2.4:-56101595 | MS.gene059035:CDS |
| TGCAGCGTAAAAGGAGGGTG+AGG | 0.609548 | 2.4:-56101589 | MS.gene059035:CDS |
| AAATCATCACCACCACCACC+AGG | 0.612097 | 2.4:+56103274 | None:intergenic |
| GATGATGCTGAACCTGGTGG+TGG | 0.614096 | 2.4:-56103286 | MS.gene059035:CDS |
| AACCGGATCGAGAATAGTAA+CGG | 0.619462 | 2.4:+56103425 | None:intergenic |
| TAACTCATCATCAAGAATGG+TGG | 0.628185 | 2.4:+56100789 | None:intergenic |
| TCGTCGGAAAGCTGTACTTG+TGG | 0.638527 | 2.4:+56100865 | None:intergenic |
| ATCGAGTAGAGAAGACACGA+AGG | 0.652664 | 2.4:-56100840 | MS.gene059035:CDS |
| TTACGTGCAGCGTAAAAGGA+GGG | 0.661430 | 2.4:-56101594 | MS.gene059035:CDS |
| ACAAGTACAGCTTTCCGACG+AGG | 0.683663 | 2.4:-56100863 | MS.gene059035:CDS |
| AATGATGATGCTGAACCTGG+TGG | 0.756267 | 2.4:-56103289 | MS.gene059035:CDS |
| TCCTCTTCAAGCTAGCACTG+GGG | 0.759848 | 2.4:-56103173 | MS.gene059035:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAAATGATAATTATGA+TGG | + | chr2.4:56100863-56100882 | None:intergenic | 10.0% |
| !!! | AATAAAGATATGTTTAATTT+TGG | - | chr2.4:56101302-56101321 | MS.gene059035:intron | 10.0% |
| !!! | TTTTATTACATAAATTTGAT+AGG | - | chr2.4:56101682-56101701 | MS.gene059035:intron | 10.0% |
| !! | TTTATTCAAAATTGTAATTG+AGG | + | chr2.4:56101288-56101307 | None:intergenic | 15.0% |
| !!! | AAAATGTGTACATTTTTTAA+TGG | - | chr2.4:56102387-56102406 | MS.gene059035:intron | 15.0% |
| !!! | CAACAATTTATTTTAAAATG+TGG | - | chr2.4:56101429-56101448 | MS.gene059035:CDS | 15.0% |
| !!! | TAAAAAATGTACACATTTTT+CGG | + | chr2.4:56102386-56102405 | None:intergenic | 15.0% |
| !!! | TAAAATGTGGTTATATTTTA+GGG | - | chr2.4:56101442-56101461 | MS.gene059035:CDS | 15.0% |
| !!! | TTAAAATGTGGTTATATTTT+AGG | - | chr2.4:56101441-56101460 | MS.gene059035:CDS | 15.0% |
| !! | AATGCAATAAAATATGAACA+TGG | + | chr2.4:56102323-56102342 | None:intergenic | 20.0% |
| !!! | AAAATATCCTTTTTGAAAGT+TGG | - | chr2.4:56102160-56102179 | MS.gene059035:CDS | 20.0% |
| !!! | AAAATGTGGTTATATTTTAG+GGG | - | chr2.4:56101443-56101462 | MS.gene059035:CDS | 20.0% |
| !!! | ATAATTATGATGGTTTTAAC+CGG | + | chr2.4:56100853-56100872 | None:intergenic | 20.0% |
| !!! | GTTTTAATTAAGGTTATACA+TGG | - | chr2.4:56101350-56101369 | MS.gene059035:intron | 20.0% |
| !!! | TCAAATAAAATTTGTTTTCC+AGG | + | chr2.4:56102346-56102365 | None:intergenic | 20.0% |
| !!! | TCTATATAAAAGTATAGTAC+CGG | - | chr2.4:56103125-56103144 | MS.gene059035:intron | 20.0% |
| !!! | TTTCAGTTTTCACATATATT+GGG | - | chr2.4:56101198-56101217 | MS.gene059035:intron | 20.0% |
| !!! | TTTTCAGTTTTCACATATAT+TGG | - | chr2.4:56101197-56101216 | MS.gene059035:intron | 20.0% |
| ! | AAAGAAACCAACTTTCAAAA+AGG | + | chr2.4:56102170-56102189 | None:intergenic | 25.0% |
| ! | ATATAACATTATGCAGTGTT+TGG | - | chr2.4:56101776-56101795 | MS.gene059035:intron | 25.0% |
| ! | CATAAATTTGATAGGTTGTT+TGG | - | chr2.4:56101690-56101709 | MS.gene059035:intron | 25.0% |
| ! | CATGCTAAATATAAACATAC+TGG | + | chr2.4:56102442-56102461 | None:intergenic | 25.0% |
| ! | GAGTTAAGTAATCTATATAC+CGG | + | chr2.4:56103104-56103123 | None:intergenic | 25.0% |
| ! | GTATTTAGTGCAATTTACTT+TGG | - | chr2.4:56101478-56101497 | MS.gene059035:CDS | 25.0% |
| ! | GTTATTTAGAAAAGAGTTGA+GGG | - | chr2.4:56102712-56102731 | MS.gene059035:intron | 25.0% |
| ! | TAATTAAAACAAGTTGTGTC+TGG | - | chr2.4:56102583-56102602 | MS.gene059035:intron | 25.0% |
| ! | TCTTCATAGAATAGATATAC+AGG | - | chr2.4:56101827-56101846 | MS.gene059035:intron | 25.0% |
| ! | TTATAACTCATCATCAAGAA+TGG | + | chr2.4:56103475-56103494 | None:intergenic | 25.0% |
| ! | TTTATTTCAGTATCGTTAGA+TGG | - | chr2.4:56102520-56102539 | MS.gene059035:intron | 25.0% |
| !! | TTCATATTTTATTGCATTCC+TGG | - | chr2.4:56102325-56102344 | MS.gene059035:intron | 25.0% |
| !!! | AAATGTGGTTATATTTTAGG+GGG | - | chr2.4:56101444-56101463 | MS.gene059035:CDS | 25.0% |
| !!! | AAGTTGTAGGTATTTTTGTA+GGG | - | chr2.4:56102980-56102999 | MS.gene059035:intron | 25.0% |
| !!! | CACTTGGTAAGTTTTAATTA+AGG | - | chr2.4:56101340-56101359 | MS.gene059035:intron | 25.0% |
| !!! | GTTTTTAACTTTCAAACACT+TGG | - | chr2.4:56101324-56101343 | MS.gene059035:intron | 25.0% |
| !!! | TAAGTTGTAGGTATTTTTGT+AGG | - | chr2.4:56102979-56102998 | MS.gene059035:intron | 25.0% |
| !!! | TGTTAGTGATGATTTGTTTT+TGG | - | chr2.4:56100918-56100937 | MS.gene059035:intron | 25.0% |
| !!! | TTTATTTTTAACCCAGTTGT+TGG | - | chr2.4:56102815-56102834 | MS.gene059035:intron | 25.0% |
| ACACCGAAAACATATATGAA+TGG | + | chr2.4:56102247-56102266 | None:intergenic | 30.0% | |
| AGAAATCATAGATACGATGA+GGG | - | chr2.4:56101548-56101567 | MS.gene059035:CDS | 30.0% | |
| ATGTATGTGGATACTATTGT+TGG | - | chr2.4:56102924-56102943 | MS.gene059035:intron | 30.0% | |
| CAATTGATACACAAGTTTGT+TGG | - | chr2.4:56102284-56102303 | MS.gene059035:intron | 30.0% | |
| CATAATCTTCAGCACAAAAA+GGG | + | chr2.4:56101028-56101047 | None:intergenic | 30.0% | |
| CATACATGTGATTAGATTTG+TGG | - | chr2.4:56103173-56103192 | MS.gene059035:intron | 30.0% | |
| CGTTATTTAGAAAAGAGTTG+AGG | - | chr2.4:56102711-56102730 | MS.gene059035:intron | 30.0% | |
| CTGATGATTGTGATAATTGA+TGG | - | chr2.4:56102043-56102062 | MS.gene059035:intron | 30.0% | |
| GCTCATTAAAACTAATAAGC+AGG | + | chr2.4:56101959-56101978 | None:intergenic | 30.0% | |
| TAAGTAATCTATATACCGGT+GGG | + | chr2.4:56103100-56103119 | None:intergenic | 30.0% | |
| TAGAATATTATTTACCCCAC+CGG | - | chr2.4:56103082-56103101 | MS.gene059035:intron | 30.0% | |
| TCATAATCTTCAGCACAAAA+AGG | + | chr2.4:56101029-56101048 | None:intergenic | 30.0% | |
| TGATGAAATGTTGTATCCTT+AGG | - | chr2.4:56103219-56103238 | MS.gene059035:CDS | 30.0% | |
| TTAAGTAATCTATATACCGG+TGG | + | chr2.4:56103101-56103120 | None:intergenic | 30.0% | |
| TTTAGTGCAATTTACTTTGG+AGG | - | chr2.4:56101481-56101500 | MS.gene059035:CDS | 30.0% | |
| ! | ATTGTGATAATTGATGGCAT+TGG | - | chr2.4:56102049-56102068 | MS.gene059035:intron | 30.0% |
| ! | GCACCATTCATATATGTTTT+CGG | - | chr2.4:56102241-56102260 | MS.gene059035:intron | 30.0% |
| !! | GATTTCCTTTGCTTTAGAAA+TGG | - | chr2.4:56102952-56102971 | MS.gene059035:intron | 30.0% |
| !! | GTTATATTTTAGGGGGAAAA+AGG | - | chr2.4:56101451-56101470 | MS.gene059035:CDS | 30.0% |
| !! | GTTGTTTCAGATCTGTTTTT+GGG | - | chr2.4:56100942-56100961 | MS.gene059035:intron | 30.0% |
| !!! | TGTTGTTTCAGATCTGTTTT+TGG | - | chr2.4:56100941-56100960 | MS.gene059035:intron | 30.0% |
| AAGTAATCTATATACCGGTG+GGG | + | chr2.4:56103099-56103118 | None:intergenic | 35.0% | |
| AGAAACACCAACCATTACAA+TGG | + | chr2.4:56102003-56102022 | None:intergenic | 35.0% | |
| AGAAATGGATGCTAAGTTGT+AGG | - | chr2.4:56102967-56102986 | MS.gene059035:intron | 35.0% | |
| CATCTTAAAAGTAGCGAATC+CGG | - | chr2.4:56101617-56101636 | MS.gene059035:intron | 35.0% | |
| CTATTACAGTTCAAGTCACA+TGG | + | chr2.4:56103260-56103279 | None:intergenic | 35.0% | |
| CTGTTCTACCAATACTTGTT+TGG | - | chr2.4:56101908-56101927 | MS.gene059035:intron | 35.0% | |
| CTTGAACACCAAACAAGTAT+TGG | + | chr2.4:56101919-56101938 | None:intergenic | 35.0% | |
| GAAAAACTTTGCATGTTGAG+TGG | + | chr2.4:56102140-56102159 | None:intergenic | 35.0% | |
| GAAACCAGACATTATTCCTA+AGG | + | chr2.4:56103238-56103257 | None:intergenic | 35.0% | |
| GACAAAGACTGACTAAAACA+TGG | + | chr2.4:56101981-56102000 | None:intergenic | 35.0% | |
| GAGAAATCATAGATACGATG+AGG | - | chr2.4:56101547-56101566 | MS.gene059035:CDS | 35.0% | |
| GTATCCTTAGGAATAATGTC+TGG | - | chr2.4:56103231-56103250 | MS.gene059035:CDS | 35.0% | |
| TAACTCATCATCAAGAATGG+TGG | + | chr2.4:56103472-56103491 | None:intergenic | 35.0% | |
| TCACATGTATGCAGAGTAAA+TGG | + | chr2.4:56103164-56103183 | None:intergenic | 35.0% | |
| TCAGTCTTTGTCCATTGTAA+TGG | - | chr2.4:56101989-56102008 | MS.gene059035:intron | 35.0% | |
| TCTTTGTCCATTGTAATGGT+TGG | - | chr2.4:56101993-56102012 | MS.gene059035:intron | 35.0% | |
| TTTCGAGCTATCGTTTACTA+TGG | + | chr2.4:56102885-56102904 | None:intergenic | 35.0% | |
| ! | AACGATTGCAACAAAGTATC+AGG | + | chr2.4:56102797-56102816 | None:intergenic | 35.0% |
| ! | ATTTGTGGACACTTTGTTTG+AGG | - | chr2.4:56103188-56103207 | MS.gene059035:CDS | 35.0% |
| ! | TACTGTCAGACTACATGTTT+TGG | + | chr2.4:56103356-56103375 | None:intergenic | 35.0% |
| ! | TTGCAACAAAGTATCAGGTT+CGG | + | chr2.4:56102792-56102811 | None:intergenic | 35.0% |
| !! | AGCATCCATTTCTAAAGCAA+AGG | + | chr2.4:56102960-56102979 | None:intergenic | 35.0% |
| !!! | GGATTCGCTACTTTTAAGAT+GGG | + | chr2.4:56101618-56101637 | None:intergenic | 35.0% |
| !!! | GGTTGGTGTTTCTTTGTTTT+TGG | - | chr2.4:56102010-56102029 | MS.gene059035:intron | 35.0% |
| !!! | TGGCATTGGTTATACTTTTC+AGG | - | chr2.4:56102063-56102082 | MS.gene059035:intron | 35.0% |
| AAAAGTAGCGAATCCGGATA+TGG | - | chr2.4:56101623-56101642 | MS.gene059035:intron | 40.0% | |
| AAAGTAGCGAATCCGGATAT+GGG | - | chr2.4:56101624-56101643 | MS.gene059035:intron | 40.0% | |
| AACCGGATCGAGAATAGTAA+CGG | + | chr2.4:56100836-56100855 | None:intergenic | 40.0% | |
| AAGTTTACGTGCAGCGTAAA+AGG | - | chr2.4:56102660-56102679 | MS.gene059035:intron | 40.0% | |
| ATGTAGTCTGACAGTAGCTA+TGG | - | chr2.4:56103360-56103379 | MS.gene059035:intron | 40.0% | |
| ATGTATGCAGAGTAAATGGC+GGG | + | chr2.4:56103160-56103179 | None:intergenic | 40.0% | |
| CATACGAACTTTCCCATATC+CGG | + | chr2.4:56101639-56101658 | None:intergenic | 40.0% | |
| CATGTATGCAGAGTAAATGG+CGG | + | chr2.4:56103161-56103180 | None:intergenic | 40.0% | |
| CGAAAGATGATTTCGTGGAA+AGG | - | chr2.4:56102900-56102919 | MS.gene059035:intron | 40.0% | |
| GTTTACTATGGCAGCTTCAA+TGG | + | chr2.4:56102873-56102892 | None:intergenic | 40.0% | |
| TAGCTCGAAAGATGATTTCG+TGG | - | chr2.4:56102895-56102914 | MS.gene059035:intron | 40.0% | |
| TCGTATGAGTTTGTGTTGAG+TGG | - | chr2.4:56101652-56101671 | MS.gene059035:intron | 40.0% | |
| ! | CAAAGTATCAGGTTCGGAAT+TGG | + | chr2.4:56102786-56102805 | None:intergenic | 40.0% |
| ! | GAAGGTTTGATTTCGTGCAA+GGG | - | chr2.4:56103436-56103455 | MS.gene059035:CDS | 40.0% |
| ! | TGCACGTAAACTTCTGGTTA+TGG | + | chr2.4:56102653-56102672 | None:intergenic | 40.0% |
| ! | TTCGTGGAAAGGTATGTATG+TGG | - | chr2.4:56102911-56102930 | MS.gene059035:intron | 40.0% |
| !! | ATTTTAGGGGGAAAAAGGCT+TGG | - | chr2.4:56101456-56101475 | MS.gene059035:CDS | 40.0% |
| !! | TGGTGGTGGTGATGATTTAA+GGG | - | chr2.4:56100989-56101008 | MS.gene059035:intron | 40.0% |
| !!! | CGGATTCGCTACTTTTAAGA+TGG | + | chr2.4:56101619-56101638 | None:intergenic | 40.0% |
| !!! | GTTTCAGATCTGTTTTTGGG+TGG | - | chr2.4:56100945-56100964 | MS.gene059035:intron | 40.0% |
| AGAAAAGAGTTGAGGGAAGC+AGG | - | chr2.4:56102719-56102738 | MS.gene059035:intron | 45.0% | |
| AGTATCAGGTTCGGAATTGG+AGG | + | chr2.4:56102783-56102802 | None:intergenic | 45.0% | |
| ATCCTCTTCAAGCTAGCACT+GGG | - | chr2.4:56101084-56101103 | MS.gene059035:intron | 45.0% | |
| ATCGAGTAGAGAAGACACGA+AGG | - | chr2.4:56103418-56103437 | MS.gene059035:intron | 45.0% | |
| GAAAAGAGTTGAGGGAAGCA+GGG | - | chr2.4:56102720-56102739 | MS.gene059035:intron | 45.0% | |
| TTACGCTGCACGTAAACTTC+TGG | + | chr2.4:56102659-56102678 | None:intergenic | 45.0% | |
| TTACGTGCAGCGTAAAAGGA+GGG | - | chr2.4:56102664-56102683 | MS.gene059035:intron | 45.0% | |
| TTTACGTGCAGCGTAAAAGG+AGG | - | chr2.4:56102663-56102682 | MS.gene059035:intron | 45.0% | |
| ! | AATGATGATGCTGAACCTGG+TGG | - | chr2.4:56100969-56100988 | MS.gene059035:intron | 45.0% |
| ! | CGAAGGTTTGATTTCGTGCA+AGG | - | chr2.4:56103435-56103454 | MS.gene059035:CDS | 45.0% |
| ! | GGAAATGATGATGCTGAACC+TGG | - | chr2.4:56100966-56100985 | MS.gene059035:intron | 45.0% |
| !! | GTGGTGGTGGTGATGATTTA+AGG | - | chr2.4:56100988-56101007 | MS.gene059035:intron | 45.0% |
| !!! | TAATAAAAATTGTATTTTTA+AGG | - | chr2.4:56101166-56101185 | MS.gene059035:intron | 5.0% |
| AAATCATCACCACCACCACC+AGG | + | chr2.4:56100987-56101006 | None:intergenic | 50.0% | |
| ACAAGTACAGCTTTCCGACG+AGG | - | chr2.4:56103395-56103414 | MS.gene059035:intron | 50.0% | |
| ACAGCTTCGTCACCAACAAC+TGG | + | chr2.4:56102830-56102849 | None:intergenic | 50.0% | |
| CAGCTTCGTCACCAACAACT+GGG | + | chr2.4:56102829-56102848 | None:intergenic | 50.0% | |
| CATCCTCTTCAAGCTAGCAC+TGG | - | chr2.4:56101083-56101102 | MS.gene059035:intron | 50.0% | |
| CCTGCTTGTGGGCAAAAAGT+GGG | - | chr2.4:56102091-56102110 | MS.gene059035:intron | 50.0% | |
| CGCCGTTACTATTCTCGATC+CGG | - | chr2.4:56100831-56100850 | MS.gene059035:CDS | 50.0% | |
| CGTAAAAGGAGGGTGAGGAA+AGG | - | chr2.4:56102674-56102693 | MS.gene059035:intron | 50.0% | |
| CTGCTTGTGGGCAAAAAGTG+GGG | - | chr2.4:56102092-56102111 | MS.gene059035:intron | 50.0% | |
| CTTCTCTACTCGATCCTCGT+CGG | + | chr2.4:56103412-56103431 | None:intergenic | 50.0% | |
| GCAGGGTTGCATTCTCTTCT+TGG | - | chr2.4:56102737-56102756 | MS.gene059035:intron | 50.0% | |
| GGGTTGCATTCTCTTCTTGG+AGG | - | chr2.4:56102740-56102759 | MS.gene059035:intron | 50.0% | |
| TCCTCTTCAAGCTAGCACTG+GGG | - | chr2.4:56101085-56101104 | MS.gene059035:intron | 50.0% | |
| TCCTGCTTGTGGGCAAAAAG+TGG | - | chr2.4:56102090-56102109 | MS.gene059035:intron | 50.0% | |
| TCGTCGGAAAGCTGTACTTG+TGG | + | chr2.4:56103396-56103415 | None:intergenic | 50.0% | |
| TTCAGGTGTGTCCTGCTTGT+GGG | - | chr2.4:56102080-56102099 | MS.gene059035:intron | 50.0% | |
| TTCGGAATTGGAGGAAGCTG+TGG | + | chr2.4:56102774-56102793 | None:intergenic | 50.0% | |
| TTGTGGGCAAAAAGTGGGGA+TGG | - | chr2.4:56102096-56102115 | MS.gene059035:intron | 50.0% | |
| ! | AAATGGCGGGAACATGCATC+CGG | + | chr2.4:56103147-56103166 | None:intergenic | 50.0% |
| ! | TTTCAGGTGTGTCCTGCTTG+TGG | - | chr2.4:56102079-56102098 | MS.gene059035:intron | 50.0% |
| GATGATGCTGAACCTGGTGG+TGG | - | chr2.4:56100972-56100991 | MS.gene059035:intron | 55.0% | |
| TGCAGCGTAAAAGGAGGGTG+AGG | - | chr2.4:56102669-56102688 | MS.gene059035:intron | 55.0% | |
| ! | ACCCCAGTGCTAGCTTGAAG+AGG | + | chr2.4:56101089-56101108 | None:intergenic | 55.0% |
| ! | CTTCAAGCTAGCACTGGGGT+GGG | - | chr2.4:56101089-56101108 | MS.gene059035:intron | 55.0% |
| ! | TCTTCAAGCTAGCACTGGGG+TGG | - | chr2.4:56101088-56101107 | MS.gene059035:intron | 55.0% |
| !!! | CCCACTTTTTGCCCACAAGC+AGG | + | chr2.4:56102094-56102113 | None:intergenic | 55.0% |
| !! | GATGCTGAACCTGGTGGTGG+TGG | - | chr2.4:56100975-56100994 | MS.gene059035:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 56100786 | 56103494 | 56100786 | ID=MS.gene059035 |
| chr2.4 | mRNA | 56100786 | 56103494 | 56100786 | ID=MS.gene059035.t1;Parent=MS.gene059035 |
| chr2.4 | exon | 56103428 | 56103494 | 56103428 | ID=MS.gene059035.t1.exon1;Parent=MS.gene059035.t1 |
| chr2.4 | CDS | 56103428 | 56103494 | 56103428 | ID=cds.MS.gene059035.t1;Parent=MS.gene059035.t1 |
| chr2.4 | exon | 56103174 | 56103328 | 56103174 | ID=MS.gene059035.t1.exon2;Parent=MS.gene059035.t1 |
| chr2.4 | CDS | 56103174 | 56103328 | 56103174 | ID=cds.MS.gene059035.t1;Parent=MS.gene059035.t1 |
| chr2.4 | exon | 56102099 | 56102195 | 56102099 | ID=MS.gene059035.t1.exon3;Parent=MS.gene059035.t1 |
| chr2.4 | CDS | 56102099 | 56102195 | 56102099 | ID=cds.MS.gene059035.t1;Parent=MS.gene059035.t1 |
| chr2.4 | exon | 56101359 | 56101617 | 56101359 | ID=MS.gene059035.t1.exon4;Parent=MS.gene059035.t1 |
| chr2.4 | CDS | 56101359 | 56101617 | 56101359 | ID=cds.MS.gene059035.t1;Parent=MS.gene059035.t1 |
| chr2.4 | exon | 56100786 | 56100891 | 56100786 | ID=MS.gene059035.t1.exon5;Parent=MS.gene059035.t1 |
| chr2.4 | CDS | 56100786 | 56100891 | 56100786 | ID=cds.MS.gene059035.t1;Parent=MS.gene059035.t1 |
| Gene Sequence |
| Protein sequence |
