Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55200.t1 | XP_013448295.1 | 92.2 | 268 | 21 | 0 | 1 | 268 | 8 | 275 | 2.60E-140 | 508.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55200.t1 | Q9BSH5 | 34.3 | 201 | 121 | 3 | 59 | 248 | 10 | 210 | 2.0e-24 | 114.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55200.t1 | A0A072TY15 | 92.2 | 268 | 21 | 0 | 1 | 268 | 8 | 275 | 1.8e-140 | 508.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050021 | MS.gene55200 | 0.807491 | 4.92E-50 | -1.69E-46 |
| MS.gene050787 | MS.gene55200 | 0.808847 | 2.53E-50 | -1.69E-46 |
| MS.gene050820 | MS.gene55200 | 0.800255 | 1.57E-48 | -1.69E-46 |
| MS.gene052190 | MS.gene55200 | 0.8225 | 2.29E-53 | -1.69E-46 |
| MS.gene054291 | MS.gene55200 | -0.831177 | 1.94E-55 | -1.69E-46 |
| MS.gene054467 | MS.gene55200 | 0.810045 | 1.40E-50 | -1.69E-46 |
| MS.gene054468 | MS.gene55200 | 0.806697 | 7.25E-50 | -1.69E-46 |
| MS.gene055358 | MS.gene55200 | 0.826868 | 2.14E-54 | -1.69E-46 |
| MS.gene057026 | MS.gene55200 | 0.815705 | 8.06E-52 | -1.69E-46 |
| MS.gene058739 | MS.gene55200 | 0.803131 | 4.04E-49 | -1.69E-46 |
| MS.gene058829 | MS.gene55200 | 0.801929 | 7.14E-49 | -1.69E-46 |
| MS.gene058935 | MS.gene55200 | 0.818496 | 1.90E-52 | -1.69E-46 |
| MS.gene059035 | MS.gene55200 | 0.824468 | 7.94E-54 | -1.69E-46 |
| MS.gene060553 | MS.gene55200 | 0.876287 | 1.57E-68 | -1.69E-46 |
| MS.gene060919 | MS.gene55200 | 0.804156 | 2.47E-49 | -1.69E-46 |
| MS.gene061114 | MS.gene55200 | -0.800734 | 1.25E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55200.t1 | MTR_5g040090 | 92.593 | 270 | 18 | 1 | 1 | 268 | 1 | 270 | 0.0 | 514 |
| MS.gene55200.t1 | MTR_7g039510 | 92.164 | 268 | 21 | 0 | 1 | 268 | 8 | 275 | 0.0 | 513 |
| MS.gene55200.t1 | MTR_7g039510 | 91.903 | 247 | 20 | 0 | 1 | 247 | 8 | 254 | 1.47e-171 | 474 |
| MS.gene55200.t1 | MTR_7g039510 | 92.093 | 215 | 17 | 0 | 1 | 215 | 8 | 222 | 1.05e-148 | 415 |
| MS.gene55200.t1 | MTR_7g039510 | 91.623 | 191 | 16 | 0 | 1 | 191 | 8 | 198 | 2.15e-130 | 367 |
| MS.gene55200.t1 | MTR_7g039510 | 89.941 | 169 | 17 | 0 | 1 | 169 | 8 | 176 | 1.02e-111 | 320 |
| MS.gene55200.t1 | MTR_7g039510 | 89.349 | 169 | 18 | 0 | 1 | 169 | 8 | 176 | 1.03e-111 | 319 |
| MS.gene55200.t1 | MTR_5g040090 | 85.083 | 181 | 23 | 2 | 1 | 179 | 1 | 179 | 6.41e-109 | 313 |
| MS.gene55200.t1 | MTR_7g090370 | 48.585 | 212 | 105 | 3 | 55 | 263 | 63 | 273 | 1.77e-68 | 213 |
| MS.gene55200.t1 | MTR_7g090370 | 48.344 | 151 | 74 | 3 | 55 | 202 | 63 | 212 | 6.26e-44 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55200.t1 | AT1G14310 | 71.963 | 214 | 60 | 0 | 54 | 267 | 40 | 253 | 1.56e-118 | 340 |
| MS.gene55200.t1 | AT2G41250 | 45.498 | 211 | 113 | 2 | 55 | 263 | 76 | 286 | 6.04e-56 | 181 |
Find 77 sgRNAs with CRISPR-Local
Find 335 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGATTTGAATTTCGGAAAT+TGG | 0.144199 | 5.2:+30191930 | None:intergenic |
| CGAGAGTAACGAACCGTATT+TGG | 0.229523 | 5.2:+30191729 | None:intergenic |
| AATATTATGCCTCTGGATTA+AGG | 0.258606 | 5.2:+30187225 | None:intergenic |
| TGGGAAGTAGATTTGAATTT+CGG | 0.273581 | 5.2:+30191923 | None:intergenic |
| GAAACTACAAATTTCCAAAA+TGG | 0.281844 | 5.2:+30188763 | None:intergenic |
| GAGCATACTTATGCCACTAT+TGG | 0.296788 | 5.2:-30191754 | MS.gene55200:CDS |
| CCTTAAGCGAGAGTCGAAAT+TGG | 0.323043 | 5.2:+30188299 | None:intergenic |
| GATCAAAAGGCAGATAAATT+CGG | 0.345700 | 5.2:-30187412 | MS.gene55200:CDS |
| CGAGAGTGGAAGTACTGAAT+TGG | 0.350653 | 5.2:+30191903 | None:intergenic |
| AAAGTCTTCGTCACCGCAAC+CGG | 0.363697 | 5.2:+30188732 | None:intergenic |
| AGCATACTTATGCCACTATT+GGG | 0.366723 | 5.2:-30191753 | MS.gene55200:CDS |
| CAGGATTGGCCAATTGCAAC+AGG | 0.374423 | 5.2:+30191779 | None:intergenic |
| AACCCCTGCTTTATCTCAGC+TGG | 0.379967 | 5.2:+30189649 | None:intergenic |
| AGATTTGAATTTCGGAAATT+GGG | 0.380087 | 5.2:+30191931 | None:intergenic |
| AGGGTGATGGGAGGCCATTT+TGG | 0.390702 | 5.2:-30188777 | MS.gene55200:CDS |
| ATCAAAAGGCAGATAAATTC+GGG | 0.399235 | 5.2:-30187411 | MS.gene55200:CDS |
| GCCACTATTGGGTCCAAATA+CGG | 0.399975 | 5.2:-30191742 | MS.gene55200:intron |
| CCAATTTCGACTCTCGCTTA+AGG | 0.402293 | 5.2:-30188299 | MS.gene55200:CDS |
| GATATGTCAAAACAGGTTAT+GGG | 0.403961 | 5.2:-30187288 | MS.gene55200:intron |
| GTGGCATAAGTATGCTCAAC+AGG | 0.404742 | 5.2:+30191760 | None:intergenic |
| GCAATCTATCCCTACGTCAT+TGG | 0.433325 | 5.2:+30187387 | None:intergenic |
| GGAGCAGCAAGGTGCTCTAA+TGG | 0.433466 | 5.2:-30191859 | MS.gene55200:CDS |
| GTTTCTGAAGCCACCGGTTG+CGG | 0.451369 | 5.2:-30188745 | MS.gene55200:CDS |
| GAGAGTGGAAGTACTGAATT+GGG | 0.457237 | 5.2:+30191904 | None:intergenic |
| ATGACGTAGGGATAGATTGC+TGG | 0.463114 | 5.2:-30187384 | MS.gene55200:intron |
| AAAATATTTCAAGCTGCTCT+AGG | 0.479897 | 5.2:-30188009 | MS.gene55200:intron |
| TGGAGGCACCCTGTTGCAAT+TGG | 0.484119 | 5.2:-30191788 | MS.gene55200:CDS |
| CATTGTGTCAAAAGCTCCGT+TGG | 0.494580 | 5.2:+30188468 | None:intergenic |
| TTGATCATCTCCTATGTGCA+AGG | 0.494581 | 5.2:+30187429 | None:intergenic |
| TTGTATCAGCACTATGCAAA+AGG | 0.495938 | 5.2:-30188508 | MS.gene55200:intron |
| TTGTATTTACTACAGGGTGA+TGG | 0.498594 | 5.2:-30188790 | MS.gene55200:intron |
| TCGCTTAAGGAAGCTATTGA+AGG | 0.502464 | 5.2:-30188286 | MS.gene55200:CDS |
| AATAAGTAATATTATGCCTC+TGG | 0.504476 | 5.2:+30187218 | None:intergenic |
| ATGCCTCTGGATTAAGGATG+CGG | 0.508571 | 5.2:+30187231 | None:intergenic |
| ATGACTCTTCTCAAGGATGC+TGG | 0.508682 | 5.2:-30188448 | MS.gene55200:CDS |
| TGTATTTACTACAGGGTGAT+GGG | 0.508825 | 5.2:-30188789 | MS.gene55200:intron |
| ATGGTCATAGAGGTGGGACT+GGG | 0.510956 | 5.2:-30191840 | MS.gene55200:CDS |
| GGTATATGACGCATTACTGT+TGG | 0.515328 | 5.2:-30191815 | MS.gene55200:CDS |
| ATAAGTATGCTCAACAGGAT+TGG | 0.524660 | 5.2:+30191765 | None:intergenic |
| GGGTTTCAGAGCTTTGAAGA+AGG | 0.531266 | 5.2:+30191951 | None:intergenic |
| GACGCATTACTGTTGGATGC+TGG | 0.533706 | 5.2:-30191808 | MS.gene55200:CDS |
| GATCAATTAAATGTAGAGGC+TGG | 0.533838 | 5.2:-30187457 | MS.gene55200:CDS |
| AATGGTCATAGAGGTGGGAC+TGG | 0.535896 | 5.2:-30191841 | MS.gene55200:CDS |
| TGCTCTAATGGTCATAGAGG+TGG | 0.536622 | 5.2:-30191847 | MS.gene55200:CDS |
| GTCATTATATCATCAGAGGT+TGG | 0.537154 | 5.2:-30188051 | MS.gene55200:CDS |
| TGACACAATGACTCTTCTCA+AGG | 0.537225 | 5.2:-30188455 | MS.gene55200:CDS |
| GCACATAGGAGATGATCAAA+AGG | 0.538144 | 5.2:-30187425 | MS.gene55200:CDS |
| GAATCCAGCTGAGATAAAGC+AGG | 0.541045 | 5.2:-30189653 | MS.gene55200:CDS |
| GTCATAGAGGTGGGACTGGG+AGG | 0.549906 | 5.2:-30191837 | MS.gene55200:CDS |
| ACCGTATTTGGACCCAATAG+TGG | 0.550574 | 5.2:+30191741 | None:intergenic |
| AAACAGTGACACAGTTAAGA+TGG | 0.552732 | 5.2:-30188331 | MS.gene55200:intron |
| TTTGTAGTTTCTGAAGCCAC+CGG | 0.553852 | 5.2:-30188751 | MS.gene55200:CDS |
| GCTCTAATGGTCATAGAGGT+GGG | 0.555235 | 5.2:-30191846 | MS.gene55200:CDS |
| ATATGTCAAAACAGGTTATG+GGG | 0.583954 | 5.2:-30187287 | MS.gene55200:intron |
| ATTGTGTCAAAAGCTCCGTT+GGG | 0.586008 | 5.2:+30188469 | None:intergenic |
| TGTAGATCAATTAAATGTAG+AGG | 0.592869 | 5.2:-30187461 | MS.gene55200:intron |
| AGGTGCTCTAATGGTCATAG+AGG | 0.597859 | 5.2:-30191850 | MS.gene55200:CDS |
| TGCAGTCATTATATCATCAG+AGG | 0.598140 | 5.2:-30188055 | MS.gene55200:CDS |
| TCATAGAGGTGGGACTGGGA+GGG | 0.602050 | 5.2:-30191836 | MS.gene55200:CDS |
| AATTCGGGGCCAATGACGTA+GGG | 0.606381 | 5.2:-30187396 | MS.gene55200:CDS |
| AATCCAGCTGAGATAAAGCA+GGG | 0.607959 | 5.2:-30189652 | MS.gene55200:CDS |
| GTCTTCGTCACCGCAACCGG+TGG | 0.619108 | 5.2:+30188735 | None:intergenic |
| ACTATGCAAAAGGTGATGCA+TGG | 0.630951 | 5.2:-30188498 | MS.gene55200:CDS |
| GCTGGCAAAGCCTTGCACAT+AGG | 0.632234 | 5.2:-30187439 | MS.gene55200:CDS |
| AAATTCGGGGCCAATGACGT+AGG | 0.638294 | 5.2:-30187397 | MS.gene55200:CDS |
| GATGCATGGCATCTTCCCAA+CGG | 0.645781 | 5.2:-30188484 | MS.gene55200:CDS |
| ATTTACTACAGGGTGATGGG+AGG | 0.664583 | 5.2:-30188786 | MS.gene55200:intron |
| AATCCGCATCCTTAATCCAG+AGG | 0.670851 | 5.2:-30187234 | MS.gene55200:CDS |
| ACTCTTCTCAAGGATGCTGG+AGG | 0.671993 | 5.2:-30188445 | MS.gene55200:intron |
| TATGTCAAAACAGGTTATGG+GGG | 0.672904 | 5.2:-30187286 | MS.gene55200:intron |
| AGGATTGGCCAATTGCAACA+GGG | 0.678275 | 5.2:+30191780 | None:intergenic |
| TCTTCAACACAGATCAACAA+AGG | 0.682819 | 5.2:-30191880 | MS.gene55200:CDS |
| AGATCAACAAAGGAGCAGCA+AGG | 0.687190 | 5.2:-30191870 | MS.gene55200:CDS |
| ATCTGTGTTGAAGACGAGAG+TGG | 0.688494 | 5.2:+30191889 | None:intergenic |
| GCATTACTGTTGGATGCTGG+AGG | 0.719310 | 5.2:-30191805 | MS.gene55200:CDS |
| TCAAAAGGCAGATAAATTCG+GGG | 0.739827 | 5.2:-30187410 | MS.gene55200:CDS |
| ATCCAGCTGAGATAAAGCAG+GGG | 0.746828 | 5.2:-30189651 | MS.gene55200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAAGAAGAAAAAAAAA+AGG | + | chr5.2:30191354-30191373 | None:intergenic | 10.0% |
| !!! | ATTTTATTTTTTAGTTATGT+TGG | + | chr5.2:30190659-30190678 | None:intergenic | 10.0% |
| !! | AAAAATTTGAATAACCATAT+TGG | + | chr5.2:30187716-30187735 | None:intergenic | 15.0% |
| !! | AACTTATGAATTAACATAAA+AGG | + | chr5.2:30188208-30188227 | None:intergenic | 15.0% |
| !! | ACATTCAATAAAACAAAAAA+TGG | - | chr5.2:30191603-30191622 | MS.gene55200:intron | 15.0% |
| !! | TAAAAAATAAAATGACCTAT+TGG | - | chr5.2:30190666-30190685 | MS.gene55200:intron | 15.0% |
| !!! | GTTTTTAATGTTTCATATTT+TGG | - | chr5.2:30191109-30191128 | MS.gene55200:intron | 15.0% |
| !! | AAAAATAAGCTGTTGAAATT+TGG | + | chr5.2:30188151-30188170 | None:intergenic | 20.0% |
| !! | AAAACAGATATCTGTTTAAT+TGG | - | chr5.2:30190354-30190373 | MS.gene55200:intron | 20.0% |
| !! | AAAATAAGCTGTTGAAATTT+GGG | + | chr5.2:30188150-30188169 | None:intergenic | 20.0% |
| !! | AACAAAAATGGAATTGATAT+AGG | - | chr5.2:30189935-30189954 | MS.gene55200:intron | 20.0% |
| !! | ACAAAAATGGAATTGATATA+GGG | - | chr5.2:30189936-30189955 | MS.gene55200:intron | 20.0% |
| !! | ACTAACTACATTTCATTATT+GGG | - | chr5.2:30190993-30191012 | MS.gene55200:intron | 20.0% |
| !! | AGAAAATATCTAATGTAACA+TGG | + | chr5.2:30190299-30190318 | None:intergenic | 20.0% |
| !! | ATATCTGTTTAATTGGTAAA+TGG | - | chr5.2:30190361-30190380 | MS.gene55200:intron | 20.0% |
| !! | GAGAATAAATTATATGCTAT+AGG | - | chr5.2:30188363-30188382 | MS.gene55200:intron | 20.0% |
| !! | TAAACTTATAGAGGATAATT+AGG | - | chr5.2:30187612-30187631 | MS.gene55200:intron | 20.0% |
| !! | TACTAACTACATTTCATTAT+TGG | - | chr5.2:30190992-30191011 | MS.gene55200:intron | 20.0% |
| !!! | AATATGTGAAACATTTGTTT+TGG | + | chr5.2:30191313-30191332 | None:intergenic | 20.0% |
| !!! | ATGTTCTTTTATATATGCTA+AGG | + | chr5.2:30191406-30191425 | None:intergenic | 20.0% |
| !!! | ATTAAGTTGTTTATCCAAAT+AGG | - | chr5.2:30187573-30187592 | MS.gene55200:intron | 20.0% |
| !!! | TAATGAGTATATTTGTTAAG+AGG | + | chr5.2:30189422-30189441 | None:intergenic | 20.0% |
| !!! | TATAGTTTGTTAGATAAAAC+CGG | - | chr5.2:30189330-30189349 | MS.gene55200:intron | 20.0% |
| ! | AAAATATCAGGGACTAATTT+GGG | - | chr5.2:30187857-30187876 | MS.gene55200:intron | 25.0% |
| ! | AAATAAGCTGTTGAAATTTG+GGG | + | chr5.2:30188149-30188168 | None:intergenic | 25.0% |
| ! | AATACATCATAGTTCATATG+TGG | - | chr5.2:30189103-30189122 | MS.gene55200:intron | 25.0% |
| ! | ACAACCAAGAAAATAAGTAT+TGG | + | chr5.2:30190118-30190137 | None:intergenic | 25.0% |
| ! | AGATTTGAATTTCGGAAATT+GGG | + | chr5.2:30187277-30187296 | None:intergenic | 25.0% |
| ! | AGGAATTTAACTATCATGAT+AGG | - | chr5.2:30190174-30190193 | MS.gene55200:intron | 25.0% |
| ! | ATAGTTAAATTCCTTTGTAG+TGG | + | chr5.2:30190168-30190187 | None:intergenic | 25.0% |
| ! | ATGAACAAAACTTACATGTA+AGG | + | chr5.2:30190825-30190844 | None:intergenic | 25.0% |
| ! | CAAATAAAACAGAACTAGAA+AGG | + | chr5.2:30190521-30190540 | None:intergenic | 25.0% |
| ! | CCAAAAAGAATAATGATAGA+AGG | + | chr5.2:30189489-30189508 | None:intergenic | 25.0% |
| ! | CCTTTGCAAAAAAAATAACT+TGG | - | chr5.2:30189166-30189185 | MS.gene55200:intron | 25.0% |
| ! | CTAAATTGATATGTCAAAAC+AGG | - | chr5.2:30191910-30191929 | MS.gene55200:CDS | 25.0% |
| ! | CTACATTTAATTGATCTACA+AGG | + | chr5.2:30191744-30191763 | None:intergenic | 25.0% |
| ! | CTTGATAAGAGTTTATAAAG+AGG | - | chr5.2:30188078-30188097 | MS.gene55200:intron | 25.0% |
| ! | GAAACTACAAATTTCCAAAA+TGG | + | chr5.2:30190445-30190464 | None:intergenic | 25.0% |
| ! | GAATGTTAAGAACACAAATT+TGG | + | chr5.2:30190252-30190271 | None:intergenic | 25.0% |
| ! | GATACAATTTCATAACCAAT+AGG | + | chr5.2:30190684-30190703 | None:intergenic | 25.0% |
| ! | GATTTGAATTGGGTATATAT+AGG | + | chr5.2:30189993-30190012 | None:intergenic | 25.0% |
| ! | GTATTATCATATCGAAAGAA+TGG | + | chr5.2:30190975-30190994 | None:intergenic | 25.0% |
| ! | GTTAGAAATTAACTGTAACT+AGG | + | chr5.2:30190331-30190350 | None:intergenic | 25.0% |
| ! | TAGAAAATTGTGAAAGATCA+AGG | - | chr5.2:30187904-30187923 | MS.gene55200:intron | 25.0% |
| ! | TAGATTTGAATTTCGGAAAT+TGG | + | chr5.2:30187278-30187297 | None:intergenic | 25.0% |
| ! | TGTAGATCAATTAAATGTAG+AGG | - | chr5.2:30191744-30191763 | MS.gene55200:CDS | 25.0% |
| ! | TTGCAAAAAAAATAACTTGG+TGG | - | chr5.2:30189169-30189188 | MS.gene55200:intron | 25.0% |
| ! | TTTCTATAAGGGAAAATATG+AGG | - | chr5.2:30189761-30189780 | MS.gene55200:intron | 25.0% |
| !! | AAACTCAGTTGAGAAATTTT+CGG | + | chr5.2:30190090-30190109 | None:intergenic | 25.0% |
| !! | CCTTCTATCATTATTCTTTT+TGG | - | chr5.2:30189486-30189505 | MS.gene55200:intron | 25.0% |
| !! | CTCTAAACATTTTCATACTA+GGG | - | chr5.2:30187781-30187800 | MS.gene55200:intron | 25.0% |
| !! | CTGATTGAATTTTCATAGAT+TGG | + | chr5.2:30190558-30190577 | None:intergenic | 25.0% |
| !! | GGAAAATATGAGGAAAATTT+TGG | - | chr5.2:30189771-30189790 | MS.gene55200:intron | 25.0% |
| !! | TCTCTAAACATTTTCATACT+AGG | - | chr5.2:30187780-30187799 | MS.gene55200:intron | 25.0% |
| !! | TCTTTGTTGTATTTACTACA+GGG | - | chr5.2:30190409-30190428 | MS.gene55200:intron | 25.0% |
| !! | TTTTCATCAGATACTGAATT+GGG | + | chr5.2:30187745-30187764 | None:intergenic | 25.0% |
| !! | TTTTTCATCAGATACTGAAT+TGG | + | chr5.2:30187746-30187765 | None:intergenic | 25.0% |
| !!! | AATTTAGAAGAAAGAGCATT+AGG | - | chr5.2:30189910-30189929 | MS.gene55200:intron | 25.0% |
| !!! | AGGAAAATTTTGGAAGTTTA+TGG | - | chr5.2:30189781-30189800 | MS.gene55200:intron | 25.0% |
| !!! | CCAAGTTATTTTTTTTGCAA+AGG | + | chr5.2:30189169-30189188 | None:intergenic | 25.0% |
| !!! | TATTTTTTTTGCAAAGGCAA+AGG | + | chr5.2:30189163-30189182 | None:intergenic | 25.0% |
| AAAAAAAGGAATGCCAAGAA+AGG | + | chr5.2:30191340-30191359 | None:intergenic | 30.0% | |
| AAAATATTTCAAGCTGCTCT+AGG | - | chr5.2:30191196-30191215 | MS.gene55200:intron | 30.0% | |
| AAGAACAAAGAAATGAGTGT+TGG | - | chr5.2:30188681-30188700 | MS.gene55200:intron | 30.0% | |
| AAGGAAAATGCTGACAATAA+AGG | + | chr5.2:30189470-30189489 | None:intergenic | 30.0% | |
| AATCAGTGACTTCAATATAC+TGG | + | chr5.2:30190274-30190293 | None:intergenic | 30.0% | |
| ACACCATATTTATAAGTCCA+GGG | + | chr5.2:30189694-30189713 | None:intergenic | 30.0% | |
| ACATGTAAGGTAAATAGCTT+AGG | + | chr5.2:30190812-30190831 | None:intergenic | 30.0% | |
| ACTACATACCATATCATTGA+AGG | + | chr5.2:30188547-30188566 | None:intergenic | 30.0% | |
| AGGAAAATGCTGACAATAAA+GGG | + | chr5.2:30189469-30189488 | None:intergenic | 30.0% | |
| ATAAGAGTGACTATCCAATA+TGG | - | chr5.2:30187699-30187718 | MS.gene55200:intron | 30.0% | |
| ATAGAAAACAGCAAGCTTAT+AGG | + | chr5.2:30189748-30189767 | None:intergenic | 30.0% | |
| ATATGTCAAAACAGGTTATG+GGG | - | chr5.2:30191918-30191937 | MS.gene55200:CDS | 30.0% | |
| ATCAAAAGGCAGATAAATTC+GGG | - | chr5.2:30191794-30191813 | MS.gene55200:CDS | 30.0% | |
| ATTTGCTTTCATTTGACAAG+AGG | - | chr5.2:30188859-30188878 | MS.gene55200:intron | 30.0% | |
| CACTATTCTTATCTCGTATT+AGG | + | chr5.2:30189215-30189234 | None:intergenic | 30.0% | |
| CTCTTTCTTCTAAATTGTCA+TGG | + | chr5.2:30189906-30189925 | None:intergenic | 30.0% | |
| CTGATGAATGTATCTTAACA+TGG | - | chr5.2:30191087-30191106 | MS.gene55200:intron | 30.0% | |
| GAAAATATCAGGGACTAATT+TGG | - | chr5.2:30187856-30187875 | MS.gene55200:intron | 30.0% | |
| GAGCATTAGGATAACAAAAA+TGG | - | chr5.2:30189923-30189942 | MS.gene55200:intron | 30.0% | |
| GATAAGAGTTTATAAAGAGG+AGG | - | chr5.2:30188081-30188100 | MS.gene55200:intron | 30.0% | |
| GATAGCTGATAAACTTATAG+AGG | - | chr5.2:30187603-30187622 | MS.gene55200:intron | 30.0% | |
| GATATGTCAAAACAGGTTAT+GGG | - | chr5.2:30191917-30191936 | MS.gene55200:CDS | 30.0% | |
| GATCAAAAGGCAGATAAATT+CGG | - | chr5.2:30191793-30191812 | MS.gene55200:CDS | 30.0% | |
| GTCATATACCTTCAATGATA+TGG | - | chr5.2:30188536-30188555 | MS.gene55200:intron | 30.0% | |
| GTTCTTGCAAACTTTAATTG+TGG | - | chr5.2:30191677-30191696 | MS.gene55200:intron | 30.0% | |
| TAAATTGTCATGGATGGTAT+AGG | + | chr5.2:30189896-30189915 | None:intergenic | 30.0% | |
| TACACCATATTTATAAGTCC+AGG | + | chr5.2:30189695-30189714 | None:intergenic | 30.0% | |
| TATGGTATGTAGTAGTGAAA+TGG | - | chr5.2:30188554-30188573 | MS.gene55200:intron | 30.0% | |
| TCTATGAAAATTCAATCAGC+TGG | - | chr5.2:30190559-30190578 | MS.gene55200:intron | 30.0% | |
| TGAAAACGTGTTTATAATCG+AGG | + | chr5.2:30189376-30189395 | None:intergenic | 30.0% | |
| TGAGATAAGCATGGTTATTA+AGG | + | chr5.2:30191567-30191586 | None:intergenic | 30.0% | |
| TGATATGTCAAAACAGGTTA+TGG | - | chr5.2:30191916-30191935 | MS.gene55200:CDS | 30.0% | |
| TGGGAAGTAGATTTGAATTT+CGG | + | chr5.2:30187285-30187304 | None:intergenic | 30.0% | |
| TTAAGAACACAAATTTGGTC+AGG | + | chr5.2:30190247-30190266 | None:intergenic | 30.0% | |
| TTATATTTGCATCATTGGTG+AGG | - | chr5.2:30191018-30191037 | MS.gene55200:intron | 30.0% | |
| TTCTTCTAAATTGTCATGGA+TGG | + | chr5.2:30189902-30189921 | None:intergenic | 30.0% | |
| TTGACCAAGTAATTTCTACT+CGG | - | chr5.2:30188941-30188960 | MS.gene55200:intron | 30.0% | |
| TTGTTTATCCAAATAGGCAT+AGG | - | chr5.2:30187579-30187598 | MS.gene55200:intron | 30.0% | |
| ! | AAGGCGTTATCAGAAATTAA+GGG | + | chr5.2:30191548-30191567 | None:intergenic | 30.0% |
| ! | ACAAGAGGTGTATGAATATA+TGG | - | chr5.2:30188874-30188893 | MS.gene55200:intron | 30.0% |
| ! | ACTCTTTCAAGAGTTTCTTT+TGG | - | chr5.2:30191508-30191527 | MS.gene55200:intron | 30.0% |
| ! | AGAGCAGCTTGAAATATTTT+TGG | + | chr5.2:30191196-30191215 | None:intergenic | 30.0% |
| ! | CTCTTTGTTGTATTTACTAC+AGG | - | chr5.2:30190408-30190427 | MS.gene55200:intron | 30.0% |
| ! | GAGAAATTTTCGGAAATCTT+GGG | + | chr5.2:30190080-30190099 | None:intergenic | 30.0% |
| ! | GAGCAGCTTGAAATATTTTT+GGG | + | chr5.2:30191195-30191214 | None:intergenic | 30.0% |
| ! | GTTGAATGATTTGGAAAGAA+AGG | - | chr5.2:30188646-30188665 | MS.gene55200:intron | 30.0% |
| ! | TAAGGCGTTATCAGAAATTA+AGG | + | chr5.2:30191549-30191568 | None:intergenic | 30.0% |
| ! | TCTTCATATTTTCCTTACGT+TGG | - | chr5.2:30191473-30191492 | MS.gene55200:intron | 30.0% |
| ! | TGAGAAATTTTCGGAAATCT+TGG | + | chr5.2:30190081-30190100 | None:intergenic | 30.0% |
| ! | TGGTTATTCAAATTTTTGCG+TGG | - | chr5.2:30187719-30187738 | MS.gene55200:intron | 30.0% |
| ! | TTGGTAAATGGCATTTGTTA+TGG | - | chr5.2:30190373-30190392 | MS.gene55200:intron | 30.0% |
| ! | TTGTTGCTTCATTTGTCTTT+GGG | - | chr5.2:30190137-30190156 | MS.gene55200:intron | 30.0% |
| !! | ACGTATTCATTTGTTATGTC+TGG | - | chr5.2:30189513-30189532 | MS.gene55200:intron | 30.0% |
| !! | GACTCCAATACTTATTTTCT+TGG | - | chr5.2:30190111-30190130 | MS.gene55200:intron | 30.0% |
| !! | GCTGTTTTCATAAGCTATAA+TGG | + | chr5.2:30187522-30187541 | None:intergenic | 30.0% |
| !! | TTTTGACACCATTGGTTAAT+AGG | + | chr5.2:30188777-30188796 | None:intergenic | 30.0% |
| !!! | AAACATGTCTTGTTTTCTTG+TGG | - | chr5.2:30191429-30191448 | MS.gene55200:intron | 30.0% |
| !!! | AAGCTTGCTGTTTTCTATAA+GGG | - | chr5.2:30189750-30189769 | MS.gene55200:intron | 30.0% |
| !!! | ATACTGGTTTTGAAAATTCC+TGG | - | chr5.2:30188964-30188983 | MS.gene55200:intron | 30.0% |
| !!! | CTTTTTTGAGGAAGTTTATG+AGG | - | chr5.2:30190492-30190511 | MS.gene55200:intron | 30.0% |
| !!! | TAAGCTTGCTGTTTTCTATA+AGG | - | chr5.2:30189749-30189768 | MS.gene55200:intron | 30.0% |
| AAAAAGTGACGAGGAAACAA+TGG | + | chr5.2:30189642-30189661 | None:intergenic | 35.0% | |
| AAACAGTGACACAGTTAAGA+TGG | - | chr5.2:30190874-30190893 | MS.gene55200:intron | 35.0% | |
| AAGAACAAGTCAATCCAAAC+GGG | - | chr5.2:30188297-30188316 | MS.gene55200:CDS | 35.0% | |
| AATTGAGAGATGAAACACAG+AGG | + | chr5.2:30190019-30190038 | None:intergenic | 35.0% | |
| ACAGAGGAGTGATTTGAATT+GGG | + | chr5.2:30190003-30190022 | None:intergenic | 35.0% | |
| AGCATACTTATGCCACTATT+GGG | - | chr5.2:30187452-30187471 | MS.gene55200:CDS | 35.0% | |
| AGGCGTTATCAGAAATTAAG+GGG | + | chr5.2:30191547-30191566 | None:intergenic | 35.0% | |
| AGTAATTTCTACTCGGATAC+TGG | - | chr5.2:30188948-30188967 | MS.gene55200:intron | 35.0% | |
| ATAAGTATGCTCAACAGGAT+TGG | + | chr5.2:30187443-30187462 | None:intergenic | 35.0% | |
| ATGGAAATGGCTCAAAAGTA+AGG | - | chr5.2:30188734-30188753 | MS.gene55200:CDS | 35.0% | |
| ATGGCTCAAAAGTAAGGTTA+AGG | - | chr5.2:30188740-30188759 | MS.gene55200:CDS | 35.0% | |
| CAAAATCTGCTAGATTGACT+TGG | - | chr5.2:30188792-30188811 | MS.gene55200:intron | 35.0% | |
| CAAGAACAAGTCAATCCAAA+CGG | - | chr5.2:30188296-30188315 | MS.gene55200:CDS | 35.0% | |
| CCCTAACTCATTATATCAGA+GGG | + | chr5.2:30187817-30187836 | None:intergenic | 35.0% | |
| CCCTCTGATATAATGAGTTA+GGG | - | chr5.2:30187814-30187833 | MS.gene55200:intron | 35.0% | |
| CTAACATAAGCCAATCCAAA+CGG | + | chr5.2:30187932-30187951 | None:intergenic | 35.0% | |
| CTAACTCATCCTTACAACAA+CGG | + | chr5.2:30188125-30188144 | None:intergenic | 35.0% | |
| CTCAATGGTCTGAAAAACTA+CGG | - | chr5.2:30189596-30189615 | MS.gene55200:intron | 35.0% | |
| CTGTGTTTCATCTCTCAATT+GGG | - | chr5.2:30190019-30190038 | MS.gene55200:intron | 35.0% | |
| GAAATCTTGGGAGTTAAGAA+AGG | + | chr5.2:30190068-30190087 | None:intergenic | 35.0% | |
| GAGACTTAAATACCAACGTA+AGG | + | chr5.2:30191488-30191507 | None:intergenic | 35.0% | |
| GATCAATTAAATGTAGAGGC+TGG | - | chr5.2:30191748-30191767 | MS.gene55200:CDS | 35.0% | |
| GGAAAATGCTGACAATAAAG+GGG | + | chr5.2:30189468-30189487 | None:intergenic | 35.0% | |
| GGGCATTATATTTGCATCAT+TGG | - | chr5.2:30191013-30191032 | MS.gene55200:intron | 35.0% | |
| GTATCCGAGTAGAAATTACT+TGG | + | chr5.2:30188948-30188967 | None:intergenic | 35.0% | |
| GTCATTATATCATCAGAGGT+TGG | - | chr5.2:30191154-30191173 | MS.gene55200:intron | 35.0% | |
| TAACATAAGCCAATCCAAAC+GGG | + | chr5.2:30187931-30187950 | None:intergenic | 35.0% | |
| TATATATGCTAAGGAATGCC+AGG | + | chr5.2:30191397-30191416 | None:intergenic | 35.0% | |
| TATGTCAAAACAGGTTATGG+GGG | - | chr5.2:30191919-30191938 | MS.gene55200:CDS | 35.0% | |
| TCAAAAGGCAGATAAATTCG+GGG | - | chr5.2:30191795-30191814 | MS.gene55200:CDS | 35.0% | |
| TCACATATTACCTCCTTTCT+TGG | - | chr5.2:30191324-30191343 | MS.gene55200:intron | 35.0% | |
| TCCCTAACTCATTATATCAG+AGG | + | chr5.2:30187818-30187837 | None:intergenic | 35.0% | |
| TCCCTCTGATATAATGAGTT+AGG | - | chr5.2:30187813-30187832 | MS.gene55200:intron | 35.0% | |
| TCCTCGGTATGAAAATATCA+GGG | - | chr5.2:30187846-30187865 | MS.gene55200:intron | 35.0% | |
| TCTGTGTTTCATCTCTCAAT+TGG | - | chr5.2:30190018-30190037 | MS.gene55200:intron | 35.0% | |
| TCTTCAACACAGATCAACAA+AGG | - | chr5.2:30187325-30187344 | MS.gene55200:intron | 35.0% | |
| TGCACTGTTATATCACATAC+AGG | - | chr5.2:30188987-30189006 | MS.gene55200:intron | 35.0% | |
| TGCAGTCATTATATCATCAG+AGG | - | chr5.2:30191150-30191169 | MS.gene55200:intron | 35.0% | |
| TGGCTCAAAAGTAAGGTTAA+GGG | - | chr5.2:30188741-30188760 | MS.gene55200:CDS | 35.0% | |
| TGTATTGAGTTATATTGCCC+TGG | - | chr5.2:30189674-30189693 | MS.gene55200:intron | 35.0% | |
| TGTATTTACTACAGGGTGAT+GGG | - | chr5.2:30190416-30190435 | MS.gene55200:intron | 35.0% | |
| TTATGGTAAGTTGTAGCATG+TGG | - | chr5.2:30189798-30189817 | MS.gene55200:intron | 35.0% | |
| TTGCCCTGGACTTATAAATA+TGG | - | chr5.2:30189688-30189707 | MS.gene55200:intron | 35.0% | |
| TTGGGTATATATAGGAAGAG+AGG | + | chr5.2:30189985-30190004 | None:intergenic | 35.0% | |
| TTGTATCAGCACTATGCAAA+AGG | - | chr5.2:30190697-30190716 | MS.gene55200:intron | 35.0% | |
| TTGTATTTACTACAGGGTGA+TGG | - | chr5.2:30190415-30190434 | MS.gene55200:intron | 35.0% | |
| TTTCCAAATCATTCAACTGC+AGG | + | chr5.2:30188643-30188662 | None:intergenic | 35.0% | |
| ! | AGACTTTTCTGCAAAGTAAG+CGG | + | chr5.2:30191069-30191088 | None:intergenic | 35.0% |
| ! | GCTTATAGCATTCTTTTCAC+TGG | + | chr5.2:30188437-30188456 | None:intergenic | 35.0% |
| ! | GTTGTTGCTTCATTTGTCTT+TGG | - | chr5.2:30190136-30190155 | MS.gene55200:intron | 35.0% |
| ! | TCATGTAAGGTTTTTCGCAT+AGG | - | chr5.2:30188817-30188836 | MS.gene55200:intron | 35.0% |
| ! | TTAAGTTGCTGTGATGGAAA+TGG | - | chr5.2:30188721-30188740 | MS.gene55200:CDS | 35.0% |
| !! | AGAAATGAGTGTTGGAAAAC+TGG | - | chr5.2:30188689-30188708 | MS.gene55200:intron | 35.0% |
| !! | ATATGCTTTGTTTCTTCCTC+AGG | - | chr5.2:30191273-30191292 | MS.gene55200:intron | 35.0% |
| !! | CATTTGTTATGTCTGGTTTC+AGG | - | chr5.2:30189520-30189539 | MS.gene55200:intron | 35.0% |
| !!! | GCTTGAAATATTTTTGGGTC+TGG | + | chr5.2:30191190-30191209 | None:intergenic | 35.0% |
| !!! | TGGGTTTGTTTTTTGTCAGT+TGG | - | chr5.2:30187876-30187895 | MS.gene55200:intron | 35.0% |
| AAAAGGAATGCCAAGAAAGG+AGG | + | chr5.2:30191337-30191356 | None:intergenic | 40.0% | |
| AATCCAGCTGAGATAAAGCA+GGG | - | chr5.2:30189553-30189572 | MS.gene55200:intron | 40.0% | |
| ACAGCTTAGTGAGATAAGCA+TGG | + | chr5.2:30191576-30191595 | None:intergenic | 40.0% | |
| ACTATGCAAAAGGTGATGCA+TGG | - | chr5.2:30190707-30190726 | MS.gene55200:intron | 40.0% | |
| AGACGTGAATTAGCGGTTAT+TGG | - | chr5.2:30191629-30191648 | MS.gene55200:intron | 40.0% | |
| AGCTATCACCTATGCCTATT+TGG | + | chr5.2:30187590-30187609 | None:intergenic | 40.0% | |
| ATGTGATATAACAGTGCACC+AGG | + | chr5.2:30188985-30189004 | None:intergenic | 40.0% | |
| ATTGTGTCAAAAGCTCCGTT+GGG | + | chr5.2:30190739-30190758 | None:intergenic | 40.0% | |
| CACAGAGGAGTGATTTGAAT+TGG | + | chr5.2:30190004-30190023 | None:intergenic | 40.0% | |
| CACTGTTTGTCATGTTAGCA+AGG | + | chr5.2:30190862-30190881 | None:intergenic | 40.0% | |
| CGTTGTTGTAAGGATGAGTT+AGG | - | chr5.2:30188123-30188142 | MS.gene55200:intron | 40.0% | |
| CTTTACAAGCCGTTGTTGTA+AGG | - | chr5.2:30188113-30188132 | MS.gene55200:intron | 40.0% | |
| GACTTGTGGTGCATTAATGT+GGG | - | chr5.2:30189079-30189098 | MS.gene55200:intron | 40.0% | |
| GAGCATACTTATGCCACTAT+TGG | - | chr5.2:30187451-30187470 | MS.gene55200:CDS | 40.0% | |
| GCACATAGGAGATGATCAAA+AGG | - | chr5.2:30191780-30191799 | MS.gene55200:CDS | 40.0% | |
| GGTATATGACGCATTACTGT+TGG | - | chr5.2:30187390-30187409 | MS.gene55200:CDS | 40.0% | |
| GTAAGGTTAAGGGATTCCTT+TGG | - | chr5.2:30188751-30188770 | MS.gene55200:CDS | 40.0% | |
| GTCCTCGGTATGAAAATATC+AGG | - | chr5.2:30187845-30187864 | MS.gene55200:intron | 40.0% | |
| GTCTGAAAAACTACGGTATC+AGG | - | chr5.2:30189603-30189622 | MS.gene55200:CDS | 40.0% | |
| TCCTTTGGCCTATTAACCAA+TGG | - | chr5.2:30188766-30188785 | MS.gene55200:CDS | 40.0% | |
| TCGCTTAAGGAAGCTATTGA+AGG | - | chr5.2:30190919-30190938 | MS.gene55200:intron | 40.0% | |
| TGACACAATGACTCTTCTCA+AGG | - | chr5.2:30190750-30190769 | MS.gene55200:intron | 40.0% | |
| TTAAGAAAGGCTTGAGGCAA+AGG | + | chr5.2:30190055-30190074 | None:intergenic | 40.0% | |
| TTGATCATCTCCTATGTGCA+AGG | + | chr5.2:30191779-30191798 | None:intergenic | 40.0% | |
| TTGCCTGCAGTTGAATGATT+TGG | - | chr5.2:30188637-30188656 | MS.gene55200:intron | 40.0% | |
| ! | ACCATTGGTTAATAGGCCAA+AGG | + | chr5.2:30188770-30188789 | None:intergenic | 40.0% |
| ! | AGCTTTGACAAAAAGTGACG+AGG | + | chr5.2:30189651-30189670 | None:intergenic | 40.0% |
| ! | AGGAGATTAAGTTGCTGTGA+TGG | - | chr5.2:30188715-30188734 | MS.gene55200:CDS | 40.0% |
| ! | CTTTGTTTCTTCCTCAGGAA+CGG | - | chr5.2:30191278-30191297 | MS.gene55200:intron | 40.0% |
| ! | GAACATTTGGCTCAGTTTGA+TGG | - | chr5.2:30188613-30188632 | MS.gene55200:intron | 40.0% |
| ! | GTTAGGGACTAATTTGTCCT+CGG | - | chr5.2:30187830-30187849 | MS.gene55200:intron | 40.0% |
| ! | TCCCTGATATTTTCATACCG+AGG | + | chr5.2:30187850-30187869 | None:intergenic | 40.0% |
| ! | TGACTTGTGGTGCATTAATG+TGG | - | chr5.2:30189078-30189097 | MS.gene55200:intron | 40.0% |
| !! | CTAGCAGATTTTGACACCAT+TGG | + | chr5.2:30188785-30188804 | None:intergenic | 40.0% |
| !! | GAGAGTGGAAGTACTGAATT+GGG | + | chr5.2:30187304-30187323 | None:intergenic | 40.0% |
| !! | GATTGACTTGGTCTCATGTA+AGG | - | chr5.2:30188804-30188823 | MS.gene55200:intron | 40.0% |
| !! | TTAGATAAAACCGGCTTGCA+AGG | - | chr5.2:30189339-30189358 | MS.gene55200:intron | 40.0% |
| !! | TTTGTAGTTTCTGAAGCCAC+CGG | - | chr5.2:30190454-30190473 | MS.gene55200:intron | 40.0% |
| !! | TTTTGAGTGAATCAAGCACC+TGG | - | chr5.2:30189015-30189034 | MS.gene55200:intron | 40.0% |
| AAGCCGACACAAGGTAACTA+GGG | + | chr5.2:30188013-30188032 | None:intergenic | 45.0% | |
| AATCAAGCACCTGGAGTTTG+CGG | - | chr5.2:30189024-30189043 | MS.gene55200:intron | 45.0% | |
| AATCCGCATCCTTAATCCAG+AGG | - | chr5.2:30191971-30191990 | MS.gene55200:CDS | 45.0% | |
| ACCGTATTTGGACCCAATAG+TGG | + | chr5.2:30187467-30187486 | None:intergenic | 45.0% | |
| AGATCAACAAAGGAGCAGCA+AGG | - | chr5.2:30187335-30187354 | MS.gene55200:intron | 45.0% | |
| AGGTGCTCTAATGGTCATAG+AGG | - | chr5.2:30187355-30187374 | MS.gene55200:intron | 45.0% | |
| ATCCAGCTGAGATAAAGCAG+GGG | - | chr5.2:30189554-30189573 | MS.gene55200:intron | 45.0% | |
| ATCTCGTATTAGGCCCTGTT+TGG | + | chr5.2:30189205-30189224 | None:intergenic | 45.0% | |
| ATCTGTGTTGAAGACGAGAG+TGG | + | chr5.2:30187319-30187338 | None:intergenic | 45.0% | |
| ATGACGTAGGGATAGATTGC+TGG | - | chr5.2:30191821-30191840 | MS.gene55200:CDS | 45.0% | |
| ATGACTCTTCTCAAGGATGC+TGG | - | chr5.2:30190757-30190776 | MS.gene55200:intron | 45.0% | |
| ATGCCTCTGGATTAAGGATG+CGG | + | chr5.2:30191977-30191996 | None:intergenic | 45.0% | |
| ATGCTGACAATAAAGGGGTG+TGG | + | chr5.2:30189463-30189482 | None:intergenic | 45.0% | |
| ATGGCTCAGACGTGAATTAG+CGG | - | chr5.2:30191622-30191641 | MS.gene55200:intron | 45.0% | |
| ATGTAGTAGTGAAATGGCCG+AGG | - | chr5.2:30188560-30188579 | MS.gene55200:intron | 45.0% | |
| CAACAACGGCTTGTAAAGTG+AGG | + | chr5.2:30188111-30188130 | None:intergenic | 45.0% | |
| CATAGTTCATATGTGGCTGC+TGG | - | chr5.2:30189110-30189129 | MS.gene55200:intron | 45.0% | |
| CATTGTGTCAAAAGCTCCGT+TGG | + | chr5.2:30190740-30190759 | None:intergenic | 45.0% | |
| CCAATTTCGACTCTCGCTTA+AGG | - | chr5.2:30190906-30190925 | MS.gene55200:intron | 45.0% | |
| CCTTAAGCGAGAGTCGAAAT+TGG | + | chr5.2:30190909-30190928 | None:intergenic | 45.0% | |
| CGAGAGTAACGAACCGTATT+TGG | + | chr5.2:30187479-30187498 | None:intergenic | 45.0% | |
| CTAAGGAATGCCAGGAAGAA+AGG | + | chr5.2:30191389-30191408 | None:intergenic | 45.0% | |
| CTAGGGGCAGATTGCAATTA+AGG | + | chr5.2:30187996-30188015 | None:intergenic | 45.0% | |
| GAATCCAGCTGAGATAAAGC+AGG | - | chr5.2:30189552-30189571 | MS.gene55200:intron | 45.0% | |
| GCAATCTATCCCTACGTCAT+TGG | + | chr5.2:30191821-30191840 | None:intergenic | 45.0% | |
| GCCACTATTGGGTCCAAATA+CGG | - | chr5.2:30187463-30187482 | MS.gene55200:intron | 45.0% | |
| GCTCTAATGGTCATAGAGGT+GGG | - | chr5.2:30187359-30187378 | MS.gene55200:intron | 45.0% | |
| GGGCAGATTGCAATTAAGGT+GGG | + | chr5.2:30187992-30188011 | None:intergenic | 45.0% | |
| GGTAAGTTGTAGCATGTGGA+AGG | - | chr5.2:30189802-30189821 | MS.gene55200:intron | 45.0% | |
| GGTTGTCTCTACATTGCACA+GGG | - | chr5.2:30188582-30188601 | MS.gene55200:intron | 45.0% | |
| GTGGCATAAGTATGCTCAAC+AGG | + | chr5.2:30187448-30187467 | None:intergenic | 45.0% | |
| GTTGCTTGTGTGATGACTTG+TGG | - | chr5.2:30189065-30189084 | MS.gene55200:intron | 45.0% | |
| GTTGTCTCTACATTGCACAG+GGG | - | chr5.2:30188583-30188602 | MS.gene55200:intron | 45.0% | |
| TGAAAGATCAAGGACCCGTT+TGG | - | chr5.2:30187914-30187933 | MS.gene55200:intron | 45.0% | |
| TGCAATGTAGAGACAACCCT+CGG | + | chr5.2:30188580-30188599 | None:intergenic | 45.0% | |
| TGCTCTAATGGTCATAGAGG+TGG | - | chr5.2:30187358-30187377 | MS.gene55200:intron | 45.0% | |
| TGGGAGTTAAGAAAGGCTTG+AGG | + | chr5.2:30190061-30190080 | None:intergenic | 45.0% | |
| TGGTTTGACCTTGCCAAACA+GGG | - | chr5.2:30189189-30189208 | MS.gene55200:intron | 45.0% | |
| TGTAGTAGTGAAATGGCCGA+GGG | - | chr5.2:30188561-30188580 | MS.gene55200:intron | 45.0% | |
| TTCAAAGACAAGCCGACACA+AGG | + | chr5.2:30188022-30188041 | None:intergenic | 45.0% | |
| TTTGGGCTTCTCCACTACAA+AGG | - | chr5.2:30190154-30190173 | MS.gene55200:intron | 45.0% | |
| ! | TTGTCCCACATCGGTTAGAT+AGG | - | chr5.2:30188052-30188071 | MS.gene55200:CDS | 45.0% |
| !! | AGGATTGGCCAATTGCAACA+GGG | + | chr5.2:30187428-30187447 | None:intergenic | 45.0% |
| !! | ATTTACTACAGGGTGATGGG+AGG | - | chr5.2:30190419-30190438 | MS.gene55200:intron | 45.0% |
| !! | CGAGAGTGGAAGTACTGAAT+TGG | + | chr5.2:30187305-30187324 | None:intergenic | 45.0% |
| !! | GAGTGTTGGAAAACTGGTTG+AGG | - | chr5.2:30188695-30188714 | MS.gene55200:intron | 45.0% |
| !! | GGGTTTCAGAGCTTTGAAGA+AGG | + | chr5.2:30187257-30187276 | None:intergenic | 45.0% |
| !! | TGTGTCGGCTTGTCTTTGAA+GGG | - | chr5.2:30188022-30188041 | MS.gene55200:CDS | 45.0% |
| !! | TTGTGTCGGCTTGTCTTTGA+AGG | - | chr5.2:30188021-30188040 | MS.gene55200:CDS | 45.0% |
| !!! | AGAGAGCGTTTTCTGCTCAA+TGG | - | chr5.2:30189581-30189600 | MS.gene55200:intron | 45.0% |
| !!! | CGGTGACGAAGACTTTTTTG+AGG | - | chr5.2:30190480-30190499 | MS.gene55200:intron | 45.0% |
| AAAGTCTTCGTCACCGCAAC+CGG | + | chr5.2:30190476-30190495 | None:intergenic | 50.0% | |
| AAATTCGGGGCCAATGACGT+AGG | - | chr5.2:30191808-30191827 | MS.gene55200:CDS | 50.0% | |
| AACCCCTGCTTTATCTCAGC+TGG | + | chr5.2:30189559-30189578 | None:intergenic | 50.0% | |
| AATGGTCATAGAGGTGGGAC+TGG | - | chr5.2:30187364-30187383 | MS.gene55200:intron | 50.0% | |
| AATTCGGGGCCAATGACGTA+GGG | - | chr5.2:30191809-30191828 | MS.gene55200:CDS | 50.0% | |
| ACTCCTCCTACTTCACACAC+TGG | + | chr5.2:30189862-30189881 | None:intergenic | 50.0% | |
| ACTCTTCTCAAGGATGCTGG+AGG | - | chr5.2:30190760-30190779 | MS.gene55200:intron | 50.0% | |
| AGCCGACACAAGGTAACTAG+GGG | + | chr5.2:30188012-30188031 | None:intergenic | 50.0% | |
| AGCGTCCTATCTAACCGATG+TGG | + | chr5.2:30188060-30188079 | None:intergenic | 50.0% | |
| ATCAAGCACCTGGAGTTTGC+GGG | - | chr5.2:30189025-30189044 | MS.gene55200:intron | 50.0% | |
| ATGGTCATAGAGGTGGGACT+GGG | - | chr5.2:30187365-30187384 | MS.gene55200:intron | 50.0% | |
| CAACTCCCAGTGTGTGAAGT+AGG | - | chr5.2:30189853-30189872 | MS.gene55200:intron | 50.0% | |
| CAAGCCGACACAAGGTAACT+AGG | + | chr5.2:30188014-30188033 | None:intergenic | 50.0% | |
| CTCCTCCTACTTCACACACT+GGG | + | chr5.2:30189861-30189880 | None:intergenic | 50.0% | |
| GACGCATTACTGTTGGATGC+TGG | - | chr5.2:30187397-30187416 | MS.gene55200:CDS | 50.0% | |
| GATCAAGGACCCGTTTGGAT+TGG | - | chr5.2:30187919-30187938 | MS.gene55200:intron | 50.0% | |
| GATGCATGGCATCTTCCCAA+CGG | - | chr5.2:30190721-30190740 | MS.gene55200:intron | 50.0% | |
| GCATTACTGTTGGATGCTGG+AGG | - | chr5.2:30187400-30187419 | MS.gene55200:CDS | 50.0% | |
| GCGTCCTATCTAACCGATGT+GGG | + | chr5.2:30188059-30188078 | None:intergenic | 50.0% | |
| GGGGCAGATTGCAATTAAGG+TGG | + | chr5.2:30187993-30188012 | None:intergenic | 50.0% | |
| GGGTTGTCTCTACATTGCAC+AGG | - | chr5.2:30188581-30188600 | MS.gene55200:intron | 50.0% | |
| GTATTAGGCCCTGTTTGGCA+AGG | + | chr5.2:30189200-30189219 | None:intergenic | 50.0% | |
| GTGGTTTGACCTTGCCAAAC+AGG | - | chr5.2:30189188-30189207 | MS.gene55200:intron | 50.0% | |
| TACATTGCACAGGGGCTGTT+GGG | - | chr5.2:30188591-30188610 | MS.gene55200:intron | 50.0% | |
| TCACTGCTTGCCTTTCTTCC+TGG | - | chr5.2:30191376-30191395 | MS.gene55200:intron | 50.0% | |
| TCTTGCGAGATCTGATCTGC+TGG | - | chr5.2:30188901-30188920 | MS.gene55200:intron | 50.0% | |
| TGCCCCTAGTTACCTTGTGT+CGG | - | chr5.2:30188007-30188026 | MS.gene55200:intron | 50.0% | |
| TTCATATGTGGCTGCTGGTG+TGG | - | chr5.2:30189115-30189134 | MS.gene55200:intron | 50.0% | |
| !! | CAGGATTGGCCAATTGCAAC+AGG | + | chr5.2:30187429-30187448 | None:intergenic | 50.0% |
| !! | GGGTGGATTTTGTCCCACAT+CGG | - | chr5.2:30188043-30188062 | MS.gene55200:CDS | 50.0% |
| !! | GTGTCGGCTTGTCTTTGAAG+GGG | - | chr5.2:30188023-30188042 | MS.gene55200:CDS | 50.0% |
| !! | TCATGAGTGAAGCACCGAGA+GGG | - | chr5.2:30188457-30188476 | MS.gene55200:CDS | 50.0% |
| CAGGGGCTGTTGGGAACATT+TGG | - | chr5.2:30188600-30188619 | MS.gene55200:intron | 55.0% | |
| CTACATTGCACAGGGGCTGT+TGG | - | chr5.2:30188590-30188609 | MS.gene55200:intron | 55.0% | |
| CTCCCAGTGTGTGAAGTAGG+AGG | - | chr5.2:30189856-30189875 | MS.gene55200:intron | 55.0% | |
| GAAATGCACCCGCAAACTCC+AGG | + | chr5.2:30189036-30189055 | None:intergenic | 55.0% | |
| GACACAATTCGCGACCCGTT+TGG | + | chr5.2:30188314-30188333 | None:intergenic | 55.0% | |
| GAGTCTCTCACCTTGCAAGC+CGG | + | chr5.2:30189352-30189371 | None:intergenic | 55.0% | |
| GCTGGCAAAGCCTTGCACAT+AGG | - | chr5.2:30191766-30191785 | MS.gene55200:CDS | 55.0% | |
| GGTTCAACACTCCGTTCCTG+AGG | + | chr5.2:30191292-30191311 | None:intergenic | 55.0% | |
| TCATAGAGGTGGGACTGGGA+GGG | - | chr5.2:30187369-30187388 | MS.gene55200:intron | 55.0% | |
| ! | GGAGCAGCAAGGTGCTCTAA+TGG | - | chr5.2:30187346-30187365 | MS.gene55200:intron | 55.0% |
| ! | TCGGCTTGTCTTTGAAGGGG+TGG | - | chr5.2:30188026-30188045 | MS.gene55200:CDS | 55.0% |
| !! | CATGAGTGAAGCACCGAGAG+GGG | - | chr5.2:30188458-30188477 | MS.gene55200:CDS | 55.0% |
| !! | CTCATGAGTGAAGCACCGAG+AGG | - | chr5.2:30188456-30188475 | MS.gene55200:CDS | 55.0% |
| !! | GTTTCTGAAGCCACCGGTTG+CGG | - | chr5.2:30190460-30190479 | MS.gene55200:intron | 55.0% |
| !! | TGGAGGCACCCTGTTGCAAT+TGG | - | chr5.2:30187417-30187436 | MS.gene55200:CDS | 55.0% |
| !!! | AGGGTGATGGGAGGCCATTT+TGG | - | chr5.2:30190428-30190447 | MS.gene55200:intron | 55.0% |
| AAATCCTGCCCCGAGCGTGA+GGG | - | chr5.2:30187952-30187971 | MS.gene55200:intron | 60.0% | |
| CAGCCACACAGTTCCCCTCT+CGG | + | chr5.2:30188474-30188493 | None:intergenic | 60.0% | |
| GAGAGGGGAACTGTGTGGCT+GGG | - | chr5.2:30188473-30188492 | MS.gene55200:CDS | 60.0% | |
| GTCATAGAGGTGGGACTGGG+AGG | - | chr5.2:30187368-30187387 | MS.gene55200:intron | 60.0% | |
| AACACACCCCCTCACGCTCG+GGG | + | chr5.2:30187963-30187982 | None:intergenic | 65.0% | |
| AATCCTGCCCCGAGCGTGAG+GGG | - | chr5.2:30187953-30187972 | MS.gene55200:intron | 65.0% | |
| CAACACACCCCCTCACGCTC+GGG | + | chr5.2:30187964-30187983 | None:intergenic | 65.0% | |
| CCAACACACCCCCTCACGCT+CGG | + | chr5.2:30187965-30187984 | None:intergenic | 65.0% | |
| CGAGAGGGGAACTGTGTGGC+TGG | - | chr5.2:30188472-30188491 | MS.gene55200:CDS | 65.0% | |
| GAAATCCTGCCCCGAGCGTG+AGG | - | chr5.2:30187951-30187970 | MS.gene55200:intron | 65.0% | |
| GCACCGAGAGGGGAACTGTG+TGG | - | chr5.2:30188468-30188487 | MS.gene55200:CDS | 65.0% | |
| GGGAACTGTGTGGCTGGGTG+TGG | - | chr5.2:30188478-30188497 | MS.gene55200:CDS | 65.0% | |
| GTCTTCGTCACCGCAACCGG+TGG | + | chr5.2:30190473-30190492 | None:intergenic | 65.0% | |
| ATCCTGCCCCGAGCGTGAGG+GGG | - | chr5.2:30187954-30187973 | MS.gene55200:intron | 70.0% | |
| CTGTGTGGCTGGGTGTGGCG+TGG | - | chr5.2:30188483-30188502 | MS.gene55200:CDS | 70.0% | |
| TGTGGCTGGGTGTGGCGTGG+TGG | - | chr5.2:30188486-30188505 | MS.gene55200:CDS | 70.0% | |
| ! | CCGAGCGTGAGGGGGTGTGT+TGG | - | chr5.2:30187962-30187981 | MS.gene55200:intron | 70.0% |
| ! | CACCCCCTCACGCTCGGGGC+AGG | + | chr5.2:30187959-30187978 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 30187229 | 30191998 | 30187229 | ID=MS.gene55200 |
| chr5.2 | mRNA | 30187229 | 30191998 | 30187229 | ID=MS.gene55200.t1;Parent=MS.gene55200 |
| chr5.2 | exon | 30191743 | 30191998 | 30191743 | ID=MS.gene55200.t1.exon1;Parent=MS.gene55200.t1 |
| chr5.2 | CDS | 30191743 | 30191998 | 30191743 | ID=cds.MS.gene55200.t1;Parent=MS.gene55200.t1 |
| chr5.2 | exon | 30189603 | 30189685 | 30189603 | ID=MS.gene55200.t1.exon2;Parent=MS.gene55200.t1 |
| chr5.2 | CDS | 30189603 | 30189685 | 30189603 | ID=cds.MS.gene55200.t1;Parent=MS.gene55200.t1 |
| chr5.2 | exon | 30188714 | 30188797 | 30188714 | ID=MS.gene55200.t1.exon3;Parent=MS.gene55200.t1 |
| chr5.2 | CDS | 30188714 | 30188797 | 30188714 | ID=cds.MS.gene55200.t1;Parent=MS.gene55200.t1 |
| chr5.2 | exon | 30188446 | 30188521 | 30188446 | ID=MS.gene55200.t1.exon4;Parent=MS.gene55200.t1 |
| chr5.2 | CDS | 30188446 | 30188521 | 30188446 | ID=cds.MS.gene55200.t1;Parent=MS.gene55200.t1 |
| chr5.2 | exon | 30188267 | 30188339 | 30188267 | ID=MS.gene55200.t1.exon5;Parent=MS.gene55200.t1 |
| chr5.2 | CDS | 30188267 | 30188339 | 30188267 | ID=cds.MS.gene55200.t1;Parent=MS.gene55200.t1 |
| chr5.2 | exon | 30188010 | 30188083 | 30188010 | ID=MS.gene55200.t1.exon6;Parent=MS.gene55200.t1 |
| chr5.2 | CDS | 30188010 | 30188083 | 30188010 | ID=cds.MS.gene55200.t1;Parent=MS.gene55200.t1 |
| chr5.2 | exon | 30187385 | 30187478 | 30187385 | ID=MS.gene55200.t1.exon7;Parent=MS.gene55200.t1 |
| chr5.2 | CDS | 30187385 | 30187478 | 30187385 | ID=cds.MS.gene55200.t1;Parent=MS.gene55200.t1 |
| chr5.2 | exon | 30187229 | 30187295 | 30187229 | ID=MS.gene55200.t1.exon8;Parent=MS.gene55200.t1 |
| chr5.2 | CDS | 30187229 | 30187295 | 30187229 | ID=cds.MS.gene55200.t1;Parent=MS.gene55200.t1 |
| Gene Sequence |
| Protein sequence |
