Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072149.t1 | XP_013444255.1 | 95 | 644 | 25 | 1 | 1 | 644 | 1 | 637 | 0.00E+00 | 1223.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072149.t1 | P28724 | 46.1 | 451 | 235 | 3 | 198 | 644 | 3 | 449 | 4.1e-116 | 420.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072149.t1 | A0A072TLH9 | 95.0 | 644 | 25 | 1 | 1 | 644 | 1 | 637 | 0.0e+00 | 1223.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049435 | MS.gene072149 | 0.802762 | 4.81E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene072149 | 0.807665 | 4.52E-50 | -1.69E-46 |
| MS.gene050156 | MS.gene072149 | 0.800997 | 1.11E-48 | -1.69E-46 |
| MS.gene050959 | MS.gene072149 | 0.800724 | 1.26E-48 | -1.69E-46 |
| MS.gene051800 | MS.gene072149 | 0.805305 | 1.42E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene072149 | 0.801883 | 7.30E-49 | -1.69E-46 |
| MS.gene052611 | MS.gene072149 | 0.816917 | 4.32E-52 | -1.69E-46 |
| MS.gene052863 | MS.gene072149 | 0.815816 | 7.62E-52 | -1.69E-46 |
| MS.gene053998 | MS.gene072149 | 0.838153 | 3.40E-57 | -1.69E-46 |
| MS.gene054467 | MS.gene072149 | 0.828925 | 6.86E-55 | -1.69E-46 |
| MS.gene054468 | MS.gene072149 | 0.824297 | 8.71E-54 | -1.69E-46 |
| MS.gene055357 | MS.gene072149 | 0.803157 | 3.99E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene072149 | 0.800716 | 1.26E-48 | -1.69E-46 |
| MS.gene05604 | MS.gene072149 | 0.804572 | 2.03E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene072149 | 0.801881 | 7.30E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene072149 | 0.805025 | 1.63E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene072149 | 0.825056 | 5.77E-54 | -1.69E-46 |
| MS.gene058010 | MS.gene072149 | 0.811773 | 5.92E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene072149 | 0.802178 | 6.35E-49 | -1.69E-46 |
| MS.gene058829 | MS.gene072149 | 0.804584 | 2.01E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene072149 | 0.813808 | 2.12E-51 | -1.69E-46 |
| MS.gene059035 | MS.gene072149 | 0.810703 | 1.01E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene072149 | 0.815262 | 1.01E-51 | -1.69E-46 |
| MS.gene06052 | MS.gene072149 | 0.808034 | 3.78E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072149.t1 | MTR_8g015600 | 98.137 | 644 | 5 | 1 | 1 | 644 | 1 | 637 | 0.0 | 1320 |
| MS.gene072149.t1 | MTR_8g015600 | 97.205 | 644 | 5 | 2 | 1 | 644 | 1 | 631 | 0.0 | 1302 |
| MS.gene072149.t1 | MTR_1g021885 | 60.759 | 237 | 58 | 3 | 1 | 237 | 1 | 202 | 6.53e-84 | 262 |
| MS.gene072149.t1 | MTR_8g015610 | 50.787 | 254 | 40 | 6 | 1 | 242 | 1 | 181 | 4.10e-54 | 200 |
| MS.gene072149.t1 | MTR_5g013470 | 27.013 | 385 | 268 | 4 | 219 | 603 | 4 | 375 | 3.95e-42 | 157 |
| MS.gene072149.t1 | MTR_6g029460 | 27.346 | 373 | 258 | 4 | 231 | 603 | 16 | 375 | 2.56e-41 | 155 |
| MS.gene072149.t1 | MTR_7g085630 | 27.078 | 373 | 259 | 5 | 231 | 603 | 16 | 375 | 1.24e-39 | 150 |
| MS.gene072149.t1 | MTR_4g099320 | 24.740 | 384 | 276 | 3 | 219 | 602 | 4 | 374 | 6.42e-39 | 149 |
| MS.gene072149.t1 | MTR_7g085630 | 27.078 | 373 | 259 | 5 | 231 | 603 | 97 | 456 | 9.85e-39 | 150 |
| MS.gene072149.t1 | MTR_6g029460 | 28.522 | 291 | 198 | 3 | 231 | 521 | 16 | 296 | 1.27e-30 | 122 |
| MS.gene072149.t1 | MTR_6g029460 | 25.839 | 298 | 211 | 3 | 306 | 603 | 2 | 289 | 2.86e-30 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072149.t1 | AT1G51720 | 78.416 | 644 | 132 | 1 | 1 | 644 | 1 | 637 | 0.0 | 1047 |
| MS.gene072149.t1 | AT1G51720 | 78.416 | 644 | 132 | 1 | 1 | 644 | 1 | 637 | 0.0 | 1047 |
| MS.gene072149.t1 | AT1G51720 | 78.995 | 557 | 110 | 1 | 1 | 557 | 1 | 550 | 0.0 | 936 |
| MS.gene072149.t1 | AT1G51720 | 79.295 | 454 | 87 | 1 | 1 | 454 | 1 | 447 | 0.0 | 752 |
| MS.gene072149.t1 | AT5G07440 | 28.418 | 373 | 254 | 5 | 231 | 603 | 16 | 375 | 2.18e-41 | 155 |
| MS.gene072149.t1 | AT5G07440 | 28.418 | 373 | 254 | 5 | 231 | 603 | 16 | 375 | 2.18e-41 | 155 |
| MS.gene072149.t1 | AT5G18170 | 27.346 | 373 | 258 | 4 | 231 | 603 | 16 | 375 | 2.94e-40 | 152 |
| MS.gene072149.t1 | AT3G03910 | 26.810 | 373 | 260 | 3 | 231 | 603 | 16 | 375 | 2.55e-39 | 150 |
| MS.gene072149.t1 | AT3G03910 | 27.826 | 345 | 236 | 3 | 231 | 575 | 16 | 347 | 4.94e-38 | 145 |
| MS.gene072149.t1 | AT5G07440 | 29.452 | 292 | 196 | 4 | 231 | 522 | 16 | 297 | 2.74e-31 | 124 |
Find 161 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAAGGCTGCAACTGATTT+TGG | 0.156312 | 8.1:+81996913 | MS.gene072149:CDS |
| TGCTCTGTCTGCAGGGAATT+TGG | 0.169315 | 8.1:+81989632 | MS.gene072149:CDS |
| GAAGAGATTGATTTAGAAAT+TGG | 0.192598 | 8.1:+81989335 | MS.gene072149:CDS |
| ATCAGATTCTAGGGGATATT+TGG | 0.211286 | 8.1:+81995095 | MS.gene072149:intron |
| GCTTTGTCTCCTTACAAATT+AGG | 0.215159 | 8.1:+81992825 | MS.gene072149:CDS |
| TTCTTGAAGCGACGCTAAAA+AGG | 0.239677 | 8.1:+81990771 | MS.gene072149:CDS |
| CCTGCAATGGCTGCTGGTGC+TGG | 0.241262 | 8.1:+81995599 | MS.gene072149:CDS |
| TAAAGCATTAATCAGATTCT+AGG | 0.253678 | 8.1:+81995085 | MS.gene072149:intron |
| CTGCTCAAAGCCAAGGAATT+TGG | 0.261198 | 8.1:-81991170 | None:intergenic |
| TCAATCTGATGCCATGAATT+TGG | 0.265423 | 8.1:+81995384 | MS.gene072149:CDS |
| GATAAGCCTGTTTATGTAAA+AGG | 0.274142 | 8.1:+81989794 | MS.gene072149:CDS |
| GCTCTTCCCATTTCAGTATC+AGG | 0.282241 | 8.1:+81994879 | MS.gene072149:CDS |
| TCACAGGGCCAAGAATATTT+TGG | 0.282585 | 8.1:+81994131 | MS.gene072149:CDS |
| ATAAAGAACTCAAAGGATTA+AGG | 0.294116 | 8.1:+81994511 | MS.gene072149:CDS |
| AGGAGACAAAGCATTCTTTA+AGG | 0.296981 | 8.1:-81992814 | None:intergenic |
| CGTATTACCTGATACTGAAA+TGG | 0.300882 | 8.1:-81994886 | None:intergenic |
| GCCATGAATTTGGTTAATTC+AGG | 0.314256 | 8.1:+81995394 | MS.gene072149:CDS |
| GGACTTTGAATCTAAATTAC+AGG | 0.316783 | 8.1:+81996558 | MS.gene072149:CDS |
| AAACATCGAAGAAATCCTTA+TGG | 0.334740 | 8.1:+81989659 | MS.gene072149:CDS |
| CAGACAGAGCAGAAAATTCT+TGG | 0.352843 | 8.1:-81989620 | None:intergenic |
| ACAGGTGAAAAGGAAGAAAA+AGG | 0.355624 | 8.1:+81989526 | MS.gene072149:CDS |
| ACTAATCGGTGCACCGTTGC+GGG | 0.357035 | 8.1:+81989394 | MS.gene072149:CDS |
| GACTTATCAAAGAGCTATAA+AGG | 0.368168 | 8.1:+81996897 | MS.gene072149:CDS |
| GGATATTTGGTTGATGAAGA+TGG | 0.368744 | 8.1:+81995108 | MS.gene072149:CDS |
| GGGGTGAGACACATGTTAAC+CGG | 0.369167 | 8.1:+81991065 | MS.gene072149:CDS |
| ACCTGAATTAACCAAATTCA+TGG | 0.371127 | 8.1:-81995395 | None:intergenic |
| GAGCCGGACCAAAATATTCT+TGG | 0.373663 | 8.1:-81994139 | None:intergenic |
| AACTATTATTATGTTCTTCA+AGG | 0.385481 | 8.1:-81989715 | None:intergenic |
| TTTGGTAACCCAACACTAAT+CGG | 0.385947 | 8.1:+81989380 | MS.gene072149:CDS |
| CCAGCACCAGCAGCCATTGC+AGG | 0.387387 | 8.1:-81995599 | None:intergenic |
| GTTGCTCCTGCAATGGCTGC+TGG | 0.389181 | 8.1:+81995593 | MS.gene072149:CDS |
| GTTGTTATATGTCAGGGCTT+TGG | 0.392307 | 8.1:+81997750 | MS.gene072149:intron |
| GGAGAAGATGATCCTTCATT+TGG | 0.396097 | 8.1:+81989362 | MS.gene072149:CDS |
| GCATGAGGTTGAATTCATTC+AGG | 0.398303 | 8.1:+81990799 | MS.gene072149:CDS |
| GATATTTGGTTGATGAAGAT+GGG | 0.402651 | 8.1:+81995109 | MS.gene072149:CDS |
| CACTTGGTTGTGAGGGAGAT+TGG | 0.408537 | 8.1:+81989311 | MS.gene072149:CDS |
| CGACCCGAAGCTACTGGTTA+TGG | 0.409092 | 8.1:+81994169 | MS.gene072149:CDS |
| TTTCTGCAGGGAACTTTCAC+AGG | 0.413815 | 8.1:+81994115 | MS.gene072149:intron |
| CAATGGCTGCTGGTGCTGGA+GGG | 0.414076 | 8.1:+81995603 | MS.gene072149:CDS |
| TAATAGTTTGCTTCATAAAG+AGG | 0.415011 | 8.1:+81989730 | MS.gene072149:CDS |
| TTAAGTATTACCAAATTCCT+TGG | 0.423028 | 8.1:+81991160 | MS.gene072149:CDS |
| GAGTTCCATGGGTGGATGAC+AGG | 0.425046 | 8.1:+81991044 | MS.gene072149:CDS |
| CGACTGCCTTCATTCCCATA+AGG | 0.429268 | 8.1:-81989674 | None:intergenic |
| AGTAGCTTCGGGTCGAAGAC+TGG | 0.431595 | 8.1:-81994161 | None:intergenic |
| GCAATGGCTGCTGGTGCTGG+AGG | 0.432301 | 8.1:+81995602 | MS.gene072149:CDS |
| TTAGAGAAGCTAATTGCATA+TGG | 0.436088 | 8.1:+81994855 | MS.gene072149:CDS |
| GGTACAATTTAACCAGTCAA+TGG | 0.436257 | 8.1:+81991096 | MS.gene072149:CDS |
| CCTTGCATGTAGGTTGTGGC+TGG | 0.440511 | 8.1:+81996487 | MS.gene072149:intron |
| GTACTTTCAGCTACCTTGTC+AGG | 0.440645 | 8.1:-81993026 | None:intergenic |
| AGATCGCACCTTTCTGTCCA+TGG | 0.441320 | 8.1:-81995328 | None:intergenic |
| GGAAGAACCAACAGGTGAAA+AGG | 0.441859 | 8.1:+81989516 | MS.gene072149:CDS |
| TATGTCAGGGCTTTGGTACA+TGG | 0.442170 | 8.1:+81997757 | MS.gene072149:intron |
| AAAGCATTAATCAGATTCTA+GGG | 0.444267 | 8.1:+81995086 | MS.gene072149:intron |
| TAACATCATGGAGCGATTGT+TGG | 0.446405 | 8.1:+81990997 | MS.gene072149:CDS |
| TTTCAGTTATGTTAACATCA+TGG | 0.447411 | 8.1:+81990985 | MS.gene072149:intron |
| GGCGTTGGTACTCGCGAGAT+GGG | 0.447541 | 8.1:+81993144 | MS.gene072149:CDS |
| CTCAGAACCAACAGGTGAAA+AGG | 0.449596 | 8.1:+81989495 | MS.gene072149:CDS |
| TTGAACTGCGTCAGTAGTAC+AGG | 0.450654 | 8.1:-81995546 | None:intergenic |
| ATGAGTGCAGTTTGATGAAC+TGG | 0.455477 | 8.1:+81996527 | MS.gene072149:CDS |
| AACATCGAAGAAATCCTTAT+GGG | 0.456133 | 8.1:+81989660 | MS.gene072149:CDS |
| CAGTCCATAACCAGTAGCTT+CGG | 0.462128 | 8.1:-81994173 | None:intergenic |
| GGACCTTCCGTCAGAGGAGA+TGG | 0.462416 | 8.1:+81993122 | MS.gene072149:intron |
| AATGGCTGCTGGTGCTGGAG+GGG | 0.463671 | 8.1:+81995604 | MS.gene072149:CDS |
| TAAAAGATGGAGAGAGGAAT+GGG | 0.464772 | 8.1:+81989553 | MS.gene072149:CDS |
| CTCTACATGGACCCATTGAC+TGG | 0.465205 | 8.1:-81991108 | None:intergenic |
| TCATGTCAGCTAGCATGAGC+TGG | 0.469008 | 8.1:-81994488 | None:intergenic |
| TGAATTCATTCAGGCAGTCC+AGG | 0.472572 | 8.1:+81990808 | MS.gene072149:CDS |
| CAAATTCCTTGGCTTTGAGC+AGG | 0.474838 | 8.1:+81991171 | MS.gene072149:CDS |
| AACGGTGCACCGATTAGTGT+TGG | 0.476386 | 8.1:-81989389 | None:intergenic |
| GGTTGTCGTATACTAATAGA+AGG | 0.482254 | 8.1:+81995415 | MS.gene072149:CDS |
| AATGGGCAGACACTTACAAA+TGG | 0.483770 | 8.1:+81989570 | MS.gene072149:CDS |
| CAAGAGCTTGAACTACCTCC+TGG | 0.486357 | 8.1:-81990826 | None:intergenic |
| AGATGTGTAGTGAGTGGTTC+TGG | 0.486916 | 8.1:+81994813 | MS.gene072149:intron |
| AGATATGTCTCAGAACCAAC+AGG | 0.493372 | 8.1:+81989487 | MS.gene072149:CDS |
| AGTGTTGGGTTACCAAATGA+AGG | 0.496093 | 8.1:-81989374 | None:intergenic |
| AGTCTTCGACCCGAAGCTAC+TGG | 0.500610 | 8.1:+81994163 | MS.gene072149:CDS |
| AGAAATCCTTATGGGAATGA+AGG | 0.503780 | 8.1:+81989668 | MS.gene072149:CDS |
| AAACGAATGCCACCTCTACA+TGG | 0.505421 | 8.1:-81991121 | None:intergenic |
| AAGCTCAGCATAGAAGTTTG+CGG | 0.507170 | 8.1:+81995169 | MS.gene072149:CDS |
| GGGCGTTGGTACTCGCGAGA+TGG | 0.507748 | 8.1:+81993143 | MS.gene072149:CDS |
| GTATTACCTGATACTGAAAT+GGG | 0.508270 | 8.1:-81994885 | None:intergenic |
| CACTAATCGGTGCACCGTTG+CGG | 0.511764 | 8.1:+81989393 | MS.gene072149:CDS |
| GCTGCACCTCCTAATTTGTA+AGG | 0.515123 | 8.1:-81992834 | None:intergenic |
| GCTCAAGCCATGACTGATCA+AGG | 0.517213 | 8.1:+81997808 | MS.gene072149:CDS |
| GGCTTGAGCAATAGTTAGAA+AGG | 0.521355 | 8.1:-81997794 | None:intergenic |
| CAAGCTCTTGAGAGAGTCAT+CGG | 0.522020 | 8.1:+81990839 | MS.gene072149:CDS |
| TACAAATTAGGAGGTGCAGC+TGG | 0.523027 | 8.1:+81992837 | MS.gene072149:CDS |
| CCGTCAGAGGAGATGGGCGT+TGG | 0.525355 | 8.1:+81993129 | MS.gene072149:CDS |
| AGTTCCATGGGTGGATGACA+GGG | 0.525479 | 8.1:+81991045 | MS.gene072149:CDS |
| GTACAATTTAACCAGTCAAT+GGG | 0.525972 | 8.1:+81991097 | MS.gene072149:CDS |
| ACGGTGCACCGATTAGTGTT+GGG | 0.527379 | 8.1:-81989388 | None:intergenic |
| GGACAGTATAGACGTCTAGT+TGG | 0.527995 | 8.1:+81993177 | MS.gene072149:CDS |
| ACATCTCACACATGAAACTC+TGG | 0.532354 | 8.1:-81992989 | None:intergenic |
| GGGTGAGACACATGTTAACC+GGG | 0.533279 | 8.1:+81991066 | MS.gene072149:CDS |
| ACTATTATTATGTTCTTCAA+GGG | 0.535925 | 8.1:-81989714 | None:intergenic |
| TTGTCTCCTTACAAATTAGG+AGG | 0.539458 | 8.1:+81992828 | MS.gene072149:CDS |
| ATGGGCAGACACTTACAAAT+GGG | 0.541305 | 8.1:+81989571 | MS.gene072149:CDS |
| GCAAGCACAAAGGCATCACT+TGG | 0.542952 | 8.1:+81989295 | MS.gene072149:CDS |
| TTCGGGTCGAAGACTGGAGC+CGG | 0.545915 | 8.1:-81994155 | None:intergenic |
| AATTTAGATTCAAAGTCCTC+CGG | 0.549512 | 8.1:-81996553 | None:intergenic |
| AAGCAAAACCATGGACAGAA+AGG | 0.550979 | 8.1:+81995320 | MS.gene072149:CDS |
| GGTTGTTAAAAGATGGAGAG+AGG | 0.553521 | 8.1:+81989547 | MS.gene072149:CDS |
| TTCATCCCTCCTCCAATGGT+TGG | 0.555575 | 8.1:-81989242 | None:intergenic |
| TTGCTGCCAACCATTGGAGG+AGG | 0.555674 | 8.1:+81989236 | MS.gene072149:CDS |
| TACACAGCCTTGATCAGTCA+TGG | 0.556808 | 8.1:-81997815 | None:intergenic |
| TGTTCTCGTTGCTCCTGCAA+TGG | 0.558265 | 8.1:+81995586 | MS.gene072149:CDS |
| ATTGATTTAGAAATTGGACC+TGG | 0.560041 | 8.1:+81989341 | MS.gene072149:CDS |
| ATGTTGCTGCCAACCATTGG+AGG | 0.561385 | 8.1:+81989233 | MS.gene072149:CDS |
| GTAATACTTAAATTCATCGA+CGG | 0.562298 | 8.1:-81991148 | None:intergenic |
| GCTTATGTCGATGTGAAAGA+TGG | 0.565084 | 8.1:+81989593 | MS.gene072149:CDS |
| GGTGAAAAGGAAGAACCAAC+AGG | 0.565192 | 8.1:+81989508 | MS.gene072149:CDS |
| TTAAAAGATGGAGAGAGGAA+TGG | 0.567654 | 8.1:+81989552 | MS.gene072149:CDS |
| AGCCTCCAAAGATAAAATCA+TGG | 0.570668 | 8.1:+81989769 | MS.gene072149:CDS |
| CAGTTTGATGAACTGGTCAC+CGG | 0.570708 | 8.1:+81996534 | MS.gene072149:CDS |
| AAAGGCATCACTTGGTTGTG+AGG | 0.572466 | 8.1:+81989303 | MS.gene072149:CDS |
| CGCCCATCTCCTCTGACGGA+AGG | 0.572515 | 8.1:-81993125 | None:intergenic |
| TGAATGTTGCTGCCAACCAT+TGG | 0.574459 | 8.1:+81989230 | None:intergenic |
| GCATGGTGAGAGCAAGCAGA+TGG | 0.575621 | 8.1:+81989433 | MS.gene072149:CDS |
| AATGAAGGATCATCTTCTCC+AGG | 0.576398 | 8.1:-81989359 | None:intergenic |
| AGGAGGGATGAATTCTGCAT+TGG | 0.577230 | 8.1:+81989253 | MS.gene072149:CDS |
| AAAGGGCAAAAGTGATAATG+AGG | 0.578064 | 8.1:+81992878 | MS.gene072149:CDS |
| CATGTCAGCTAGCATGAGCT+GGG | 0.581909 | 8.1:-81994487 | None:intergenic |
| CGAAGCTACTGGTTATGGAC+TGG | 0.582965 | 8.1:+81994174 | MS.gene072149:CDS |
| GACCTTCCGTCAGAGGAGAT+GGG | 0.585077 | 8.1:+81993123 | MS.gene072149:CDS |
| ATAATATTTGGACCGAGCAT+AGG | 0.586813 | 8.1:-81995293 | None:intergenic |
| TAAATTGTACCCGAAACCCC+CGG | 0.588382 | 8.1:-81991084 | None:intergenic |
| AAGCTCTTGAGAGAGTCATC+GGG | 0.590180 | 8.1:+81990840 | MS.gene072149:CDS |
| AAGGCATCACTTGGTTGTGA+GGG | 0.595050 | 8.1:+81989304 | MS.gene072149:CDS |
| GTAATACCTGCTCAAAGCCA+AGG | 0.595738 | 8.1:-81991177 | None:intergenic |
| AGAATTCATCCCTCCTCCAA+TGG | 0.597721 | 8.1:-81989246 | None:intergenic |
| CAGTCAATGGGTCCATGTAG+AGG | 0.599685 | 8.1:+81991109 | MS.gene072149:CDS |
| AGTCCATAACCAGTAGCTTC+GGG | 0.601782 | 8.1:-81994172 | None:intergenic |
| TCACCCCTGTCATCCACCCA+TGG | 0.610597 | 8.1:-81991049 | None:intergenic |
| GAATCTTCTGCAGAAGAGCA+TGG | 0.611081 | 8.1:+81989416 | MS.gene072149:CDS |
| TCTGCAGAAGATTCCCGCAA+CGG | 0.624839 | 8.1:-81989407 | None:intergenic |
| ATATTAGGACCTTCCGTCAG+AGG | 0.628155 | 8.1:+81993116 | MS.gene072149:intron |
| CCAACGCCCATCTCCTCTGA+CGG | 0.628777 | 8.1:-81993129 | None:intergenic |
| CAGCTACCTTGTCAGGACCA+AGG | 0.631456 | 8.1:-81993019 | None:intergenic |
| TGAGAGCAAGCAGATGGCGA+CGG | 0.631636 | 8.1:+81989439 | MS.gene072149:CDS |
| ATTATGATGAAGCAAAACCA+TGG | 0.633955 | 8.1:+81995311 | MS.gene072149:CDS |
| TCATTACCTTGGTCCTGACA+AGG | 0.634898 | 8.1:+81993013 | MS.gene072149:CDS |
| TGTGAGATGTATCATTACCT+TGG | 0.636503 | 8.1:+81993002 | MS.gene072149:CDS |
| TTCTGCAGGGAACTTTCACA+GGG | 0.636517 | 8.1:+81994116 | MS.gene072149:intron |
| AAATTAGGAGGTGCAGCTGG+TGG | 0.637075 | 8.1:+81992840 | MS.gene072149:CDS |
| CTGACGCAGTTCAAGTTCTG+AGG | 0.637492 | 8.1:+81995555 | MS.gene072149:CDS |
| TGAATGAATTCAACCTCATG+CGG | 0.642380 | 8.1:-81990797 | None:intergenic |
| TCAATGGGTCCATGTAGAGG+TGG | 0.644762 | 8.1:+81991112 | MS.gene072149:CDS |
| CTTATGTCGATGTGAAAGAT+GGG | 0.646039 | 8.1:+81989594 | MS.gene072149:CDS |
| ACTATTCAAAGACCTATGCT+CGG | 0.650401 | 8.1:+81995281 | MS.gene072149:CDS |
| TGCTGCCAACCATTGGAGGA+GGG | 0.661328 | 8.1:+81989237 | MS.gene072149:CDS |
| GCGTTGGTACTCGCGAGATG+GGG | 0.667931 | 8.1:+81993145 | MS.gene072149:CDS |
| TTTGATGAACTGGTCACCGG+AGG | 0.674578 | 8.1:+81996537 | MS.gene072149:CDS |
| GACATGAATAAAGAACTCAA+AGG | 0.675264 | 8.1:+81994504 | MS.gene072149:CDS |
| GTTCCATGGGTGGATGACAG+GGG | 0.687923 | 8.1:+81991046 | MS.gene072149:CDS |
| TGAACTGCGTCAGTAGTACA+GGG | 0.688964 | 8.1:-81995545 | None:intergenic |
| TCCTGCAGATGTGTAGTGAG+TGG | 0.690117 | 8.1:+81994807 | MS.gene072149:intron |
| ATTTGATTCAGCAAGCACAA+AGG | 0.692477 | 8.1:+81989285 | MS.gene072149:CDS |
| AAGCATTAATCAGATTCTAG+GGG | 0.694097 | 8.1:+81995087 | MS.gene072149:intron |
| ATTCATTCAGGCAGTCCAGG+AGG | 0.694432 | 8.1:+81990811 | MS.gene072149:CDS |
| GGTGAGACACATGTTAACCG+GGG | 0.713266 | 8.1:+81991067 | MS.gene072149:CDS |
| GTGAGACACATGTTAACCGG+GGG | 0.714421 | 8.1:+81991068 | MS.gene072149:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 81989233 | 81997840 | 81989233 | ID=MS.gene072149 |
| chr8.1 | mRNA | 81989233 | 81997840 | 81989233 | ID=MS.gene072149.t1;Parent=MS.gene072149 |
| chr8.1 | exon | 81989233 | 81989815 | 81989233 | ID=MS.gene072149.t1.exon1;Parent=MS.gene072149.t1 |
| chr8.1 | CDS | 81989233 | 81989815 | 81989233 | ID=cds.MS.gene072149.t1;Parent=MS.gene072149.t1 |
| chr8.1 | exon | 81990744 | 81990873 | 81990744 | ID=MS.gene072149.t1.exon2;Parent=MS.gene072149.t1 |
| chr8.1 | CDS | 81990744 | 81990873 | 81990744 | ID=cds.MS.gene072149.t1;Parent=MS.gene072149.t1 |
| chr8.1 | exon | 81990991 | 81991192 | 81990991 | ID=MS.gene072149.t1.exon3;Parent=MS.gene072149.t1 |
| chr8.1 | CDS | 81990991 | 81991192 | 81990991 | ID=cds.MS.gene072149.t1;Parent=MS.gene072149.t1 |
| chr8.1 | exon | 81992813 | 81992899 | 81992813 | ID=MS.gene072149.t1.exon4;Parent=MS.gene072149.t1 |
| chr8.1 | CDS | 81992813 | 81992899 | 81992813 | ID=cds.MS.gene072149.t1;Parent=MS.gene072149.t1 |
| chr8.1 | exon | 81992975 | 81993034 | 81992975 | ID=MS.gene072149.t1.exon5;Parent=MS.gene072149.t1 |
| chr8.1 | CDS | 81992975 | 81993034 | 81992975 | ID=cds.MS.gene072149.t1;Parent=MS.gene072149.t1 |
| chr8.1 | exon | 81993123 | 81993209 | 81993123 | ID=MS.gene072149.t1.exon6;Parent=MS.gene072149.t1 |
| chr8.1 | CDS | 81993123 | 81993209 | 81993123 | ID=cds.MS.gene072149.t1;Parent=MS.gene072149.t1 |
| chr8.1 | exon | 81994124 | 81994195 | 81994124 | ID=MS.gene072149.t1.exon7;Parent=MS.gene072149.t1 |
| chr8.1 | CDS | 81994124 | 81994195 | 81994124 | ID=cds.MS.gene072149.t1;Parent=MS.gene072149.t1 |
| chr8.1 | exon | 81994477 | 81994532 | 81994477 | ID=MS.gene072149.t1.exon8;Parent=MS.gene072149.t1 |
| chr8.1 | CDS | 81994477 | 81994532 | 81994477 | ID=cds.MS.gene072149.t1;Parent=MS.gene072149.t1 |
| chr8.1 | exon | 81994815 | 81994900 | 81994815 | ID=MS.gene072149.t1.exon9;Parent=MS.gene072149.t1 |
| chr8.1 | CDS | 81994815 | 81994900 | 81994815 | ID=cds.MS.gene072149.t1;Parent=MS.gene072149.t1 |
| chr8.1 | exon | 81995100 | 81995190 | 81995100 | ID=MS.gene072149.t1.exon10;Parent=MS.gene072149.t1 |
| chr8.1 | CDS | 81995100 | 81995190 | 81995100 | ID=cds.MS.gene072149.t1;Parent=MS.gene072149.t1 |
| chr8.1 | exon | 81995279 | 81995436 | 81995279 | ID=MS.gene072149.t1.exon11;Parent=MS.gene072149.t1 |
| chr8.1 | CDS | 81995279 | 81995436 | 81995279 | ID=cds.MS.gene072149.t1;Parent=MS.gene072149.t1 |
| chr8.1 | exon | 81995534 | 81995625 | 81995534 | ID=MS.gene072149.t1.exon12;Parent=MS.gene072149.t1 |
| chr8.1 | CDS | 81995534 | 81995625 | 81995534 | ID=cds.MS.gene072149.t1;Parent=MS.gene072149.t1 |
| chr8.1 | exon | 81996499 | 81996579 | 81996499 | ID=MS.gene072149.t1.exon13;Parent=MS.gene072149.t1 |
| chr8.1 | CDS | 81996499 | 81996579 | 81996499 | ID=cds.MS.gene072149.t1;Parent=MS.gene072149.t1 |
| chr8.1 | exon | 81996883 | 81996956 | 81996883 | ID=MS.gene072149.t1.exon14;Parent=MS.gene072149.t1 |
| chr8.1 | CDS | 81996883 | 81996956 | 81996883 | ID=cds.MS.gene072149.t1;Parent=MS.gene072149.t1 |
| chr8.1 | exon | 81997765 | 81997840 | 81997765 | ID=MS.gene072149.t1.exon15;Parent=MS.gene072149.t1 |
| chr8.1 | CDS | 81997765 | 81997840 | 81997765 | ID=cds.MS.gene072149.t1;Parent=MS.gene072149.t1 |
| Gene Sequence |
| Protein sequence |
