AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059088

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059088.t1 MTR_7g083690 55.769 208 85 4 1 206 186 388 1.78e-71 244
MS.gene059088.t1 MTR_4g005250 61.702 141 50 1 13 153 224 360 2.91e-60 200
MS.gene059088.t1 MTR_0031s0120 53.529 170 65 1 1 170 167 322 4.35e-60 200
MS.gene059088.t1 MTR_8g058470 63.235 136 50 0 36 171 38 173 2.62e-59 203
MS.gene059088.t1 MTR_7g108760 63.235 136 50 0 36 171 38 173 3.36e-59 202
MS.gene059088.t1 MTR_6g053340 63.115 122 45 0 49 170 152 273 6.84e-53 178
MS.gene059088.t1 MTR_4g061490 49.412 170 69 2 18 187 302 454 1.86e-52 186
MS.gene059088.t1 MTR_5g048260 61.157 121 47 0 1 121 115 235 1.43e-51 173
MS.gene059088.t1 MTR_6g048830 39.013 223 130 3 4 226 53 269 1.76e-50 172
MS.gene059088.t1 MTR_3g048390 36.923 260 140 7 2 258 190 428 1.68e-47 169
MS.gene059088.t1 MTR_5g073130 38.095 210 126 1 1 210 163 368 5.88e-47 166
MS.gene059088.t1 MTR_0073s0040 35.249 261 154 4 1 251 69 324 4.62e-45 159
MS.gene059088.t1 MTR_3g049960 43.564 202 64 3 1 202 206 357 5.14e-45 164
MS.gene059088.t1 MTR_1148s0010 44.578 166 92 0 2 167 151 316 1.36e-44 164
MS.gene059088.t1 MTR_4g027930 40.722 194 92 3 2 195 17 187 2.84e-43 151
MS.gene059088.t1 MTR_6g054900 44.025 159 85 2 1 159 45 199 2.13e-41 148
MS.gene059088.t1 MTR_8g045280 44.099 161 90 0 1 161 381 541 6.54e-37 143
MS.gene059088.t1 MTR_2g060030 43.609 133 75 0 1 133 340 472 1.40e-35 139
MS.gene059088.t1 MTR_8g103960 49.107 112 53 1 67 174 3 114 3.80e-35 127
MS.gene059088.t1 MTR_5g053650 36.420 162 102 1 1 161 14 175 2.51e-30 120
MS.gene059088.t1 MTR_2g450410 39.161 143 56 1 1 143 354 465 7.63e-30 120
MS.gene059088.t1 MTR_6g024400 47.321 112 59 0 56 167 308 419 1.01e-29 122
MS.gene059088.t1 MTR_7g033825 41.176 102 60 0 1 102 48 149 1.39e-21 97.8
MS.gene059088.t1 MTR_0242s0010 29.060 234 116 5 1 229 329 517 2.10e-21 97.1
MS.gene059088.t1 MTR_3g022785 30.899 178 76 2 1 178 322 452 2.20e-21 96.3
MS.gene059088.t1 MTR_5g054740 52.564 78 36 1 58 134 478 555 4.88e-20 93.2
MS.gene059088.t1 MTR_1g033770 50.495 101 46 2 109 206 3 102 1.48e-19 90.9
MS.gene059088.t1 MTR_2g103400 29.688 128 90 0 26 153 139 266 2.15e-15 78.6
MS.gene059088.t1 MTR_5g021380 38.614 101 38 1 62 162 206 282 1.86e-14 76.3
MS.gene059088.t1 MTR_1g024800 32.258 124 78 1 60 177 41 164 1.77e-12 67.0
MS.gene059088.t1 MTR_5g065250 31.111 135 85 2 22 152 211 341 5.09e-12 68.2
MS.gene059088.t1 MTR_6g033695 34.951 103 61 2 102 204 453 549 6.79e-12 67.8
MS.gene059088.t1 MTR_2g438380 51.786 56 27 0 112 167 27 82 2.56e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 85 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTATTCTTGACAATAAT+AGG 0.230919 1.2:+10727164 None:intergenic
ATTTATTCATTGCAATAATA+AGG 0.277134 1.2:-10728389 MS.gene059088:CDS
AATCAAAAGGCCGAGTTATC+TGG 0.278796 1.2:-10727542 MS.gene059088:CDS
GAAGATGTGTCAGACCATTT+TGG 0.300106 1.2:-10727968 MS.gene059088:CDS
ACTACTGAGTTACTCATTGA+TGG 0.304795 1.2:-10728091 MS.gene059088:CDS
ACAAGTCAGTCCACTCATTT+AGG 0.305302 1.2:-10727269 MS.gene059088:intron
ACACGCTGCTGATGTGAAAA+AGG 0.338573 1.2:+10727758 None:intergenic
GAAGAATGGGGTTGTTGTCT+TGG 0.347119 1.2:-10728043 MS.gene059088:CDS
TCAACAAGCTTGGGAAGTTC+CGG 0.369523 1.2:-10727891 MS.gene059088:CDS
CATGTGGTTGTCACACCATT+GGG 0.374920 1.2:-10728424 MS.gene059088:CDS
CGTGAGTATGGTACACTAAA+GGG 0.378874 1.2:-10727317 MS.gene059088:CDS
GCTTGGGAAGTTCCGGATGA+TGG 0.393897 1.2:-10727884 MS.gene059088:CDS
ACATGTTTATGCTATCAAAT+TGG 0.394978 1.2:-10728068 MS.gene059088:CDS
TGAGTGGACTGACTTGTCTT+TGG 0.403259 1.2:+10727275 None:intergenic
GCAATAATAAGGAAGATGTT+TGG 0.413511 1.2:-10728378 MS.gene059088:CDS
GATCAGCAACAACGTGAGTA+TGG 0.422266 1.2:-10727329 MS.gene059088:CDS
CTGAACCGTGCTCACCAAAA+TGG 0.427916 1.2:+10727954 None:intergenic
TATCAAATTGGTGGAAGAAT+GGG 0.430517 1.2:-10728056 MS.gene059088:CDS
TTGATGATATTCAACAAGCT+TGG 0.432541 1.2:-10727901 MS.gene059088:CDS
TGATGATATTCAACAAGCTT+GGG 0.438064 1.2:-10727900 MS.gene059088:CDS
CTATCAAATTGGTGGAAGAA+TGG 0.440884 1.2:-10728057 MS.gene059088:CDS
GATTTGCACCACTGGTCAGC+AGG 0.443578 1.2:-10728310 MS.gene059088:CDS
GGAGCCTGGTTACGTGTTTA+CGG 0.445779 1.2:-10728268 MS.gene059088:CDS
GGCAGCAACTGTTACTCTTA+AGG 0.449744 1.2:-10727441 MS.gene059088:CDS
AGGGGATGTTATATACGAAC+GGG 0.459585 1.2:-10728290 MS.gene059088:CDS
TTGATATTCCACGCATGAAT+CGG 0.459709 1.2:+10728241 None:intergenic
GTGGACTGACTTGTCTTTGG+TGG 0.472186 1.2:+10727278 None:intergenic
GAATTGAATATGTCCGCTCT+TGG 0.475133 1.2:+10727357 None:intergenic
TCATGTGGTTGTCACACCAT+TGG 0.478633 1.2:-10728425 MS.gene059088:CDS
GACCGCTTTAACCCATCATC+CGG 0.487746 1.2:+10727872 None:intergenic
TGATGCTGCTGTTCTAGAAC+AGG 0.489543 1.2:+10727644 None:intergenic
GCGGACATATTCAATTCCCT+TGG 0.493680 1.2:-10727351 MS.gene059088:CDS
TTATATACGAACGGGGAGCC+TGG 0.500475 1.2:-10728282 MS.gene059088:CDS
TGTTCTCGGATTTGCACCAC+TGG 0.510734 1.2:-10728318 MS.gene059088:CDS
TGTTTATGCTATCAAATTGG+TGG 0.512543 1.2:-10728065 MS.gene059088:CDS
CTTGGGAAGTTCCGGATGAT+GGG 0.517764 1.2:-10727883 MS.gene059088:CDS
ACAGCTGGTAGCGCTTGAGC+TGG 0.519395 1.2:+10727515 None:intergenic
TGGACTGACTTGTCTTTGGT+GGG 0.521359 1.2:+10727279 None:intergenic
CGTCCGTGACATCCTCCGTT+AGG 0.528576 1.2:+10728008 None:intergenic
CTCACGTTGTTGCTGATCCA+AGG 0.529421 1.2:+10727334 None:intergenic
ACGTGAGTATGGTACACTAA+AGG 0.529822 1.2:-10727318 MS.gene059088:CDS
TGCTGCTGTTCAAGAACAGC+TGG 0.531024 1.2:+10727500 None:intergenic
TAATAAGGAAGATGTTTGGA+AGG 0.539013 1.2:-10728374 MS.gene059088:CDS
GGAGATGACAGCGTTTGAGT+TGG 0.542012 1.2:+10727779 None:intergenic
GATGAATGTACTTCTGATAG+AGG 0.544483 1.2:-10728172 MS.gene059088:CDS
TGCAACTGATTGCTTCAAGC+GGG 0.546738 1.2:-10727462 MS.gene059088:CDS
CATTAGAGAAAATGTCAGAC+AGG 0.550572 1.2:-10727394 MS.gene059088:CDS
TGAAGCTTTAGAGAATCAAA+AGG 0.554589 1.2:-10727555 MS.gene059088:CDS
TGAAGCTTTAGAGAAACAAA+AGG 0.554589 1.2:-10727681 MS.gene059088:CDS
GCTTATTTCAACATCGTCGG+TGG 0.560911 1.2:-10728128 MS.gene059088:CDS
TACAGATGACAGCTTCAAGC+GGG 0.561234 1.2:-10727609 MS.gene059088:CDS
AAGGTCTGTGTTAAGGATTG+TGG 0.569887 1.2:-10728211 MS.gene059088:CDS
AGCTGGACATCCAGATAACT+CGG 0.578621 1.2:+10727532 None:intergenic
CAGGGGATGTTATATACGAA+CGG 0.578730 1.2:-10728291 MS.gene059088:CDS
AGTACCGTAAACACGTAACC+AGG 0.583726 1.2:+10728264 None:intergenic
TCAGCAACGAGTGGCAGACG+CGG 0.586104 1.2:-10728455 MS.gene059088:CDS
CAGCAACGAGTGGCAGACGC+GGG 0.591315 1.2:-10728454 MS.gene059088:CDS
ATTCCTAACGGAGGATGTCA+CGG 0.593022 1.2:-10728011 MS.gene059088:CDS
ATTTGCACCACTGGTCAGCA+GGG 0.596148 1.2:-10728309 MS.gene059088:CDS
CGGTTCAGCAACTTTCAAAG+AGG 0.596746 1.2:-10727939 MS.gene059088:CDS
TGTGCTTATTTCAACATCGT+CGG 0.597829 1.2:-10728131 MS.gene059088:CDS
ATGGGGTTGTTGTCTTGGTG+AGG 0.600720 1.2:-10728038 MS.gene059088:CDS
TCACGTTGTTGCTGATCCAA+GGG 0.607156 1.2:+10727335 None:intergenic
GGACGATACGCATCTATCGA+AGG 0.612318 1.2:-10727990 MS.gene059088:CDS
GTGAGTATGGTACACTAAAG+GGG 0.618226 1.2:-10727316 MS.gene059088:CDS
TTGCAACTGATTGCTTCAAG+CGG 0.629338 1.2:-10727463 MS.gene059088:CDS
TAGAACAGGTGGTATTAACT+CGG 0.635777 1.2:+10727658 None:intergenic
ACGGTACTCCGATTCATGCG+TGG 0.635892 1.2:-10728249 MS.gene059088:CDS
TGGTGAGGATGCATTCCTAA+CGG 0.636324 1.2:-10728023 MS.gene059088:CDS
TTCCGGATGATGGGTTAAAG+CGG 0.641581 1.2:-10727874 MS.gene059088:CDS
GTTGTCAGTTCAGCAACGAG+TGG 0.647683 1.2:-10728464 MS.gene059088:CDS
TGCTGCTGTTCTAGAACAGG+TGG 0.653841 1.2:+10727647 None:intergenic
ACTCCGGGGACCTAAATGAG+TGG 0.655617 1.2:+10727259 None:intergenic
TAACATCCCCTGCTGACCAG+TGG 0.657893 1.2:+10728302 None:intergenic
TTTGCACCACTGGTCAGCAG+GGG 0.659005 1.2:-10728308 MS.gene059088:CDS
AATACTCTATCACTCCCCAA+TGG 0.660145 1.2:+10728409 None:intergenic
ATCAAATTGGTGGAAGAATG+GGG 0.662397 1.2:-10728055 MS.gene059088:CDS
GCAGAATTCAATTCCAAGAG+CGG 0.665341 1.2:-10727370 MS.gene059088:CDS
CAGAGGAGCAACATGCTGAG+AGG 0.665996 1.2:-10727811 MS.gene059088:CDS
ATGTGGTTGTCACACCATTG+GGG 0.667530 1.2:-10728423 MS.gene059088:CDS
TTACAGATGACAGCTTCAAG+CGG 0.672976 1.2:-10727610 MS.gene059088:CDS
TGAGGATGCATTCCTAACGG+AGG 0.730051 1.2:-10728020 MS.gene059088:CDS
AGTATGGTACACTAAAGGGG+AGG 0.737464 1.2:-10727313 MS.gene059088:CDS
TTATTCATGTCAGTTACACG+CGG 0.759475 1.2:-10727736 MS.gene059088:CDS
GGGGATGTTATATACGAACG+GGG 0.765046 1.2:-10728289 MS.gene059088:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATTCATTGCAATAATA+AGG - chr1.2:10727274-10727293 MS.gene059088:CDS 15.0%
! ACATGTTTATGCTATCAAAT+TGG - chr1.2:10727595-10727614 MS.gene059088:CDS 25.0%
!!! AATGACGCAATTGATTTTTT+TGG - chr1.2:10727317-10727336 MS.gene059088:CDS 25.0%
!!! GTGGAATATCAATTTTTTCA+AGG - chr1.2:10727433-10727452 MS.gene059088:CDS 25.0%
!!! TTTTTTTGGAATGTTGTTCT+CGG - chr1.2:10727331-10727350 MS.gene059088:CDS 25.0%
GCAATAATAAGGAAGATGTT+TGG - chr1.2:10727285-10727304 MS.gene059088:CDS 30.0%
TAATAAGGAAGATGTTTGGA+AGG - chr1.2:10727289-10727308 MS.gene059088:CDS 30.0%
TATCAAATTGGTGGAAGAAT+GGG - chr1.2:10727607-10727626 MS.gene059088:CDS 30.0%
TGATGATATTCAACAAGCTT+GGG - chr1.2:10727763-10727782 MS.gene059088:CDS 30.0%
TGTTTATGCTATCAAATTGG+TGG - chr1.2:10727598-10727617 MS.gene059088:CDS 30.0%
! TTGATGATATTCAACAAGCT+TGG - chr1.2:10727762-10727781 MS.gene059088:CDS 30.0%
!! TGAAGCTTTAGAGAAACAAA+AGG - chr1.2:10727982-10728001 MS.gene059088:CDS 30.0%
!! TGAAGCTTTAGAGAATCAAA+AGG - chr1.2:10728108-10728127 MS.gene059088:CDS 30.0%
!!! TTTTTTAGCTACAGTTTCAG+AGG - chr1.2:10727835-10727854 MS.gene059088:CDS 30.0%
!!! TTTTTTCAAGGTCTGTGTTA+AGG - chr1.2:10727445-10727464 MS.gene059088:CDS 30.0%
ACTACTGAGTTACTCATTGA+TGG - chr1.2:10727572-10727591 MS.gene059088:CDS 35.0%
ACTGTAGCTAAAAAAGCAGT+TGG + chr1.2:10727830-10727849 None:intergenic 35.0%
ATCAAATTGGTGGAAGAATG+GGG - chr1.2:10727608-10727627 MS.gene059088:CDS 35.0%
CATTAGAGAAAATGTCAGAC+AGG - chr1.2:10728269-10728288 MS.gene059088:CDS 35.0%
CTATCAAATTGGTGGAAGAA+TGG - chr1.2:10727606-10727625 MS.gene059088:CDS 35.0%
GATGAATGTACTTCTGATAG+AGG - chr1.2:10727491-10727510 MS.gene059088:CDS 35.0%
GTTTACACCATTCTAAACTC+CGG + chr1.2:10728423-10728442 None:intergenic 35.0%
TAGAACAGGTGGTATTAACT+CGG + chr1.2:10728008-10728027 None:intergenic 35.0%
TGTGCTTATTTCAACATCGT+CGG - chr1.2:10727532-10727551 MS.gene059088:CDS 35.0%
TTATTCATGTCAGTTACACG+CGG - chr1.2:10727927-10727946 MS.gene059088:CDS 35.0%
TTGATATTCCACGCATGAAT+CGG + chr1.2:10727425-10727444 None:intergenic 35.0%
TTTACACCATTCTAAACTCC+GGG + chr1.2:10728422-10728441 None:intergenic 35.0%
! AGAACAGCAGCATCATTTTA+AGG - chr1.2:10728027-10728046 MS.gene059088:CDS 35.0%
AAGGTCTGTGTTAAGGATTG+TGG - chr1.2:10727452-10727471 MS.gene059088:CDS 40.0%
AATACTCTATCACTCCCCAA+TGG + chr1.2:10727257-10727276 None:intergenic 40.0%
AATCAAAAGGCCGAGTTATC+TGG - chr1.2:10728121-10728140 MS.gene059088:CDS 40.0%
ACAAGTCAGTCCACTCATTT+AGG - chr1.2:10728394-10728413 MS.gene059088:CDS 40.0%
ACGTGAGTATGGTACACTAA+AGG - chr1.2:10728345-10728364 MS.gene059088:CDS 40.0%
AGGGGATGTTATATACGAAC+GGG - chr1.2:10727373-10727392 MS.gene059088:CDS 40.0%
ATGGTGGCAAAAATTACGTC+AGG - chr1.2:10727167-10727186 MS.gene059088:CDS 40.0%
CAGGGGATGTTATATACGAA+CGG - chr1.2:10727372-10727391 MS.gene059088:CDS 40.0%
CGTGAGTATGGTACACTAAA+GGG - chr1.2:10728346-10728365 MS.gene059088:CDS 40.0%
GAATTGAATATGTCCGCTCT+TGG + chr1.2:10728309-10728328 None:intergenic 40.0%
GCAGAATTCAATTCCAAGAG+CGG - chr1.2:10728293-10728312 MS.gene059088:CDS 40.0%
GTGAGTATGGTACACTAAAG+GGG - chr1.2:10728347-10728366 MS.gene059088:CDS 40.0%
TGGTGGCAAAAATTACGTCA+GGG - chr1.2:10727168-10727187 MS.gene059088:CDS 40.0%
TTACACCATTCTAAACTCCG+GGG + chr1.2:10728421-10728440 None:intergenic 40.0%
TTACAGATGACAGCTTCAAG+CGG - chr1.2:10728053-10728072 MS.gene059088:CDS 40.0%
TTGCAACTGATTGCTTCAAG+CGG - chr1.2:10728200-10728219 MS.gene059088:CDS 40.0%
! GAAGATGTGTCAGACCATTT+TGG - chr1.2:10727695-10727714 MS.gene059088:CDS 40.0%
! TGAACAGCAGCATCATTTTC+AGG - chr1.2:10728174-10728193 MS.gene059088:CDS 40.0%
AAGTTACGCTTCGCTTAGCT+TGG + chr1.2:10728456-10728475 None:intergenic 45.0%
ACACGCTGCTGATGTGAAAA+AGG + chr1.2:10727908-10727927 None:intergenic 45.0%
AGCTGGACATCCAGATAACT+CGG + chr1.2:10728134-10728153 None:intergenic 45.0%
AGTACCGTAAACACGTAACC+AGG + chr1.2:10727402-10727421 None:intergenic 45.0%
AGTATGGTACACTAAAGGGG+AGG - chr1.2:10728350-10728369 MS.gene059088:CDS 45.0%
ATGTGGTTGTCACACCATTG+GGG - chr1.2:10727240-10727259 MS.gene059088:intron 45.0%
ATTCCTAACGGAGGATGTCA+CGG - chr1.2:10727652-10727671 MS.gene059088:CDS 45.0%
CATGTGGTTGTCACACCATT+GGG - chr1.2:10727239-10727258 MS.gene059088:intron 45.0%
CGGTTCAGCAACTTTCAAAG+AGG - chr1.2:10727724-10727743 MS.gene059088:CDS 45.0%
GAAGAATGGGGTTGTTGTCT+TGG - chr1.2:10727620-10727639 MS.gene059088:CDS 45.0%
GATCAGCAACAACGTGAGTA+TGG - chr1.2:10728334-10728353 MS.gene059088:CDS 45.0%
GCGGACATATTCAATTCCCT+TGG - chr1.2:10728312-10728331 MS.gene059088:CDS 45.0%
GCTTATTTCAACATCGTCGG+TGG - chr1.2:10727535-10727554 MS.gene059088:CDS 45.0%
GGCAGCAACTGTTACTCTTA+AGG - chr1.2:10728222-10728241 MS.gene059088:CDS 45.0%
GGGGATGTTATATACGAACG+GGG - chr1.2:10727374-10727393 MS.gene059088:CDS 45.0%
GGTGGCAAAAATTACGTCAG+GGG - chr1.2:10727169-10727188 MS.gene059088:CDS 45.0%
TACAGATGACAGCTTCAAGC+GGG - chr1.2:10728054-10728073 MS.gene059088:CDS 45.0%
TCAACAAGCTTGGGAAGTTC+CGG - chr1.2:10727772-10727791 MS.gene059088:CDS 45.0%
TCACGTTGTTGCTGATCCAA+GGG + chr1.2:10728331-10728350 None:intergenic 45.0%
TCATGTGGTTGTCACACCAT+TGG - chr1.2:10727238-10727257 MS.gene059088:intron 45.0%
TGCAACTGATTGCTTCAAGC+GGG - chr1.2:10728201-10728220 MS.gene059088:CDS 45.0%
TGGTGAGGATGCATTCCTAA+CGG - chr1.2:10727640-10727659 MS.gene059088:CDS 45.0%
!! TCAGACCATTTTGGTGAGCA+CGG - chr1.2:10727704-10727723 MS.gene059088:CDS 45.0%
!! TGAGTGGACTGACTTGTCTT+TGG + chr1.2:10728391-10728410 None:intergenic 45.0%
!! TGATGCTGCTGTTCTAGAAC+AGG + chr1.2:10728022-10728041 None:intergenic 45.0%
!! TGGACTGACTTGTCTTTGGT+GGG + chr1.2:10728387-10728406 None:intergenic 45.0%
!! TTCCGGATGATGGGTTAAAG+CGG - chr1.2:10727789-10727808 MS.gene059088:CDS 45.0%
AGTCCACTCATTTAGGTCCC+CGG - chr1.2:10728401-10728420 MS.gene059088:CDS 50.0%
ATGGGGTTGTTGTCTTGGTG+AGG - chr1.2:10727625-10727644 MS.gene059088:CDS 50.0%
ATTTGCACCACTGGTCAGCA+GGG - chr1.2:10727354-10727373 MS.gene059088:CDS 50.0%
CTCACGTTGTTGCTGATCCA+AGG + chr1.2:10728332-10728351 None:intergenic 50.0%
CTGAACCGTGCTCACCAAAA+TGG + chr1.2:10727712-10727731 None:intergenic 50.0%
CTTGGGAAGTTCCGGATGAT+GGG - chr1.2:10727780-10727799 MS.gene059088:CDS 50.0%
GACCGCTTTAACCCATCATC+CGG + chr1.2:10727794-10727813 None:intergenic 50.0%
GCTAAGCGAAGCGTAACTTC+TGG - chr1.2:10728457-10728476 MS.gene059088:CDS 50.0%
GGACGATACGCATCTATCGA+AGG - chr1.2:10727673-10727692 MS.gene059088:CDS 50.0%
GGAGATGACAGCGTTTGAGT+TGG + chr1.2:10727887-10727906 None:intergenic 50.0%
GGAGCCTGGTTACGTGTTTA+CGG - chr1.2:10727395-10727414 MS.gene059088:CDS 50.0%
GTTGTCAGTTCAGCAACGAG+TGG - chr1.2:10727199-10727218 MS.gene059088:intron 50.0%
TAGGTCCCCGGAGTTTAGAA+TGG - chr1.2:10728413-10728432 MS.gene059088:CDS 50.0%
TGAGGATGCATTCCTAACGG+AGG - chr1.2:10727643-10727662 MS.gene059088:CDS 50.0%
TGCTGCTGTTCAAGAACAGC+TGG + chr1.2:10728166-10728185 None:intergenic 50.0%
TGTTCTCGGATTTGCACCAC+TGG - chr1.2:10727345-10727364 MS.gene059088:CDS 50.0%
TTATATACGAACGGGGAGCC+TGG - chr1.2:10727381-10727400 MS.gene059088:CDS 50.0%
! AGACGCGGGTTTTCATCATG+TGG - chr1.2:10727223-10727242 MS.gene059088:intron 50.0%
!! GTGGACTGACTTGTCTTTGG+TGG + chr1.2:10728388-10728407 None:intergenic 50.0%
!! TGCTGCTGTTCTAGAACAGG+TGG + chr1.2:10728019-10728038 None:intergenic 50.0%
ACGGTACTCCGATTCATGCG+TGG - chr1.2:10727414-10727433 MS.gene059088:CDS 55.0%
ACTCCGGGGACCTAAATGAG+TGG + chr1.2:10728407-10728426 None:intergenic 55.0%
CAGAGGAGCAACATGCTGAG+AGG - chr1.2:10727852-10727871 MS.gene059088:CDS 55.0%
GATTTGCACCACTGGTCAGC+AGG - chr1.2:10727353-10727372 MS.gene059088:CDS 55.0%
GCTTGGGAAGTTCCGGATGA+TGG - chr1.2:10727779-10727798 MS.gene059088:CDS 55.0%
TAACATCCCCTGCTGACCAG+TGG + chr1.2:10727364-10727383 None:intergenic 55.0%
TTTGCACCACTGGTCAGCAG+GGG - chr1.2:10727355-10727374 MS.gene059088:CDS 55.0%
CGTCCGTGACATCCTCCGTT+AGG + chr1.2:10727658-10727677 None:intergenic 60.0%
TCAGCAACGAGTGGCAGACG+CGG - chr1.2:10727208-10727227 MS.gene059088:intron 60.0%
! ACAGCTGGTAGCGCTTGAGC+TGG + chr1.2:10728151-10728170 None:intergenic 60.0%
CAGCAACGAGTGGCAGACGC+GGG - chr1.2:10727209-10727228 MS.gene059088:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 10727167 10728518 10727167 ID=MS.gene059088
chr1.2 mRNA 10727167 10728518 10727167 ID=MS.gene059088.t1;Parent=MS.gene059088
chr1.2 exon 10727270 10728518 10727270 ID=MS.gene059088.t1.exon1;Parent=MS.gene059088.t1
chr1.2 CDS 10727270 10728518 10727270 ID=cds.MS.gene059088.t1;Parent=MS.gene059088.t1
chr1.2 exon 10727167 10727189 10727167 ID=MS.gene059088.t1.exon2;Parent=MS.gene059088.t1
chr1.2 CDS 10727167 10727189 10727167 ID=cds.MS.gene059088.t1;Parent=MS.gene059088.t1
Gene Sequence

>MS.gene059088

ATGGTGGCAAAAATTACGTCAGGGGATGCTTTGTTGTCAGTTCAGCAACGAGTGGCAGACGCGGGTTTTCATCATGTGGTTGTCACACCATTGGGGAGTGATAGAGTATTTATTCATTGCAATAATAAGGAAGATGTTTGGAAGGTTTTTAATGACGCAATTGATTTTTTTGGAATGTTGTTCTCGGATTTGCACCACTGGTCAGCAGGGGATGTTATATACGAACGGGGAGCCTGGTTACGTGTTTACGGTACTCCGATTCATGCGTGGAATATCAATTTTTTCAAGGTCTGTGTTAAGGATTGTGGCAGATTTTTAAATGTTGATGAATGTACTTCTGATAGAGGTCGACTTGATTTCGCACGTGTGCTTATTTCAACATCGTCGGTGGATGTTTTGAATTTAACTACTGAGTTACTCATTGATGGACATGTTTATGCTATCAAATTGGTGGAAGAATGGGGTTGTTGTCTTGGTGAGGATGCATTCCTAACGGAGGATGTCACGGACGATACGCATCTATCGAAGGAAGATGTGTCAGACCATTTTGGTGAGCACGGTTCAGCAACTTTCAAAGAGGATGTAGAAGTTCTGTTTGATGATATTCAACAAGCTTGGGAAGTTCCGGATGATGGGTTAAAGCGGTCTGAAGCTATTTCACCAACTGCTTTTTTAGCTACAGTTTCAGAGGAGCAACATGCTGAGAGGAATGACACTCCAACTCAAACGCTGTCATCTCCTTTTTCACATCAGCAGCGTGTTATTCATGTCAGTTACACGCGGACAGCAGCTGATTCTCATAACGACTTAACAGCTGAAGCTTTAGAGAAACAAAAGGCCGAGTTAATACCACCTGTTCTAGAACAGCAGCATCATTTTAAGGAAGTTACAGATGACAGCTTCAAGCGGGCAGCAGCTGTTACACATAATGTCTTAACAACTGAAGCTTTAGAGAATCAAAAGGCCGAGTTATCTGGATGTCCAGCTCAAGCGCTACCAGCTGTTCTTGAACAGCAGCATCATTTTCAGGAAGTTGCAACTGATTGCTTCAAGCGGGCAGCAACTGTTACTCTTAAGGACATCACAGCTGAAGCTGTTTCATCATTAGAGAAAATGTCAGACAGGAGCAGAATTCAATTCCAAGAGCGGACATATTCAATTCCCTTGGATCAGCAACAACGTGAGTATGGTACACTAAAGGGGAGGTCTTCTTCTTGCCCACCAAAGACAAGTCAGTCCACTCATTTAGGTCCCCGGAGTTTAGAATGGTGTAAACTTAATTCTGTCCAAGCTAAGCGAAGCGTAACTTCTGGTAGAAAAAATTCTCAGCAGCCTATTATTGTCAAGAATAA
Protein sequence

>MS.gene059088.t1

MVAKITSGDALLSVQQRVADAGFHHVVVTPLGSDRVFIHCNNKEDVWKVFNDAIDFFGMLFSDLHHWSAGDVIYERGAWLRVYGTPIHAWNINFFKVCVKDCGRFLNVDECTSDRGRLDFARVLISTSSVDVLNLTTELLIDGHVYAIKLVEEWGCCLGEDAFLTEDVTDDTHLSKEDVSDHFGEHGSATFKEDVEVLFDDIQQAWEVPDDGLKRSEAISPTAFLATVSEEQHAERNDTPTQTLSSPFSHQQRVIHVSYTRTAADSHNDLTAEALEKQKAELIPPVLEQQHHFKEVTDDSFKRAAAVTHNVLTTEALENQKAELSGCPAQALPAVLEQQHHFQEVATDCFKRAATVTLKDITAEAVSSLEKMSDRSRIQFQERTYSIPLDQQQREYGTLKGRSSSCPPKTSQSTHLAAYYCQE