Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70396.t1 | KEH19396.1 | 46.2 | 173 | 88 | 2 | 1 | 173 | 61 | 228 | 5.10E-38 | 168.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70396.t1 | A0A072TQD8 | 46.2 | 173 | 88 | 2 | 1 | 173 | 61 | 228 | 3.7e-38 | 168.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052447 | MS.gene70396 | 0.849375 | 3.37E-60 | -1.69E-46 |
| MS.gene056272 | MS.gene70396 | 0.832539 | 8.92E-56 | -1.69E-46 |
| MS.gene059088 | MS.gene70396 | 0.90511 | 6.07E-80 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70396.t1 | MTR_8g058470 | 62.832 | 113 | 42 | 0 | 1 | 113 | 61 | 173 | 2.08e-46 | 167 |
| MS.gene70396.t1 | MTR_7g108760 | 62.832 | 113 | 42 | 0 | 1 | 113 | 61 | 173 | 2.52e-46 | 166 |
| MS.gene70396.t1 | MTR_6g053340 | 60.714 | 112 | 44 | 0 | 1 | 112 | 162 | 273 | 2.82e-46 | 159 |
| MS.gene70396.t1 | MTR_7g083690 | 52.000 | 150 | 65 | 4 | 1 | 148 | 244 | 388 | 1.05e-43 | 162 |
| MS.gene70396.t1 | MTR_4g005250 | 61.053 | 95 | 37 | 0 | 1 | 95 | 266 | 360 | 4.09e-38 | 140 |
| MS.gene70396.t1 | MTR_8g103960 | 48.673 | 113 | 54 | 1 | 8 | 116 | 2 | 114 | 6.26e-35 | 125 |
| MS.gene70396.t1 | MTR_5g073130 | 41.722 | 151 | 84 | 1 | 2 | 152 | 222 | 368 | 7.81e-35 | 132 |
| MS.gene70396.t1 | MTR_4g061490 | 48.062 | 129 | 50 | 2 | 1 | 129 | 343 | 454 | 4.43e-34 | 133 |
| MS.gene70396.t1 | MTR_6g048830 | 38.690 | 168 | 97 | 3 | 1 | 168 | 108 | 269 | 1.25e-33 | 126 |
| MS.gene70396.t1 | MTR_0031s0120 | 53.571 | 112 | 38 | 1 | 1 | 112 | 225 | 322 | 5.75e-33 | 127 |
| MS.gene70396.t1 | MTR_1148s0010 | 50.000 | 108 | 54 | 0 | 2 | 109 | 209 | 316 | 1.66e-31 | 125 |
| MS.gene70396.t1 | MTR_6g054900 | 49.505 | 101 | 51 | 0 | 1 | 101 | 99 | 199 | 5.15e-31 | 119 |
| MS.gene70396.t1 | MTR_3g048390 | 35.644 | 202 | 106 | 7 | 2 | 200 | 248 | 428 | 4.32e-30 | 120 |
| MS.gene70396.t1 | MTR_6g024400 | 48.148 | 108 | 56 | 0 | 2 | 109 | 312 | 419 | 1.03e-29 | 120 |
| MS.gene70396.t1 | MTR_0073s0040 | 35.149 | 202 | 116 | 4 | 2 | 193 | 128 | 324 | 1.53e-28 | 114 |
| MS.gene70396.t1 | MTR_3g049960 | 47.107 | 121 | 43 | 2 | 24 | 144 | 258 | 357 | 2.01e-27 | 114 |
| MS.gene70396.t1 | MTR_4g027930 | 41.176 | 136 | 57 | 3 | 2 | 137 | 75 | 187 | 9.77e-27 | 106 |
| MS.gene70396.t1 | MTR_8g045280 | 47.059 | 102 | 54 | 0 | 2 | 103 | 440 | 541 | 2.80e-23 | 102 |
| MS.gene70396.t1 | MTR_5g048260 | 58.730 | 63 | 26 | 0 | 1 | 63 | 173 | 235 | 2.70e-22 | 94.7 |
| MS.gene70396.t1 | MTR_2g060030 | 52.703 | 74 | 35 | 0 | 2 | 75 | 399 | 472 | 1.48e-21 | 97.1 |
| MS.gene70396.t1 | MTR_5g054740 | 55.072 | 69 | 31 | 0 | 8 | 76 | 487 | 555 | 2.76e-20 | 93.2 |
| MS.gene70396.t1 | MTR_5g053650 | 38.835 | 103 | 62 | 1 | 2 | 103 | 73 | 175 | 6.11e-20 | 90.5 |
| MS.gene70396.t1 | MTR_1g033770 | 50.495 | 101 | 46 | 2 | 51 | 148 | 3 | 102 | 1.03e-19 | 90.5 |
| MS.gene70396.t1 | MTR_5g021380 | 38.614 | 101 | 38 | 1 | 4 | 104 | 206 | 282 | 4.80e-15 | 77.4 |
| MS.gene70396.t1 | MTR_2g103400 | 36.170 | 94 | 60 | 0 | 2 | 95 | 173 | 266 | 1.50e-14 | 75.1 |
| MS.gene70396.t1 | MTR_6g033695 | 25.200 | 250 | 163 | 7 | 44 | 275 | 453 | 696 | 4.31e-13 | 71.2 |
| MS.gene70396.t1 | MTR_1g024800 | 32.258 | 124 | 78 | 1 | 2 | 119 | 41 | 164 | 8.87e-13 | 67.4 |
| MS.gene70396.t1 | MTR_2g438380 | 51.786 | 56 | 27 | 0 | 54 | 109 | 27 | 82 | 2.18e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 79 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATTATTCTTGACAATAAT+AGG | 0.230919 | 4.3:-20004825 | None:intergenic |
| AAACAAAAGGCCGAGTTAAT+TGG | 0.277104 | 4.3:+20004300 | MS.gene70396:CDS |
| AATCAAAAGGCCGAGTTATC+TGG | 0.278796 | 4.3:+20004447 | MS.gene70396:CDS |
| GAAGATGTGTCAGACCATTT+TGG | 0.300106 | 4.3:+20004000 | MS.gene70396:CDS |
| ACTACTGAGTTACTCATTGA+TGG | 0.304795 | 4.3:+20003877 | MS.gene70396:CDS |
| ACAAGTCAGTCCACTCATTT+AGG | 0.305302 | 4.3:+20004720 | MS.gene70396:CDS |
| ACACGCTGCTGATGTGAAAA+AGG | 0.338573 | 4.3:-20004210 | None:intergenic |
| GAAGAATGGGGTTGTTGTCT+TGG | 0.347119 | 4.3:+20003925 | MS.gene70396:CDS |
| TCAACAAGCTTGGGAAGTTC+CGG | 0.369523 | 4.3:+20004077 | MS.gene70396:CDS |
| CGTGAGTATGGTACACTAAA+GGG | 0.378874 | 4.3:+20004672 | MS.gene70396:CDS |
| GCTTGGGAAGTTCCGGATGA+TGG | 0.393897 | 4.3:+20004084 | MS.gene70396:CDS |
| ACATGTTTATGCTATCAAAT+TGG | 0.394978 | 4.3:+20003900 | MS.gene70396:CDS |
| TGAGTGGACTGACTTGTCTT+TGG | 0.403259 | 4.3:-20004714 | None:intergenic |
| GATCAGCAACAACGTGAGTA+TGG | 0.422266 | 4.3:+20004660 | MS.gene70396:CDS |
| CTGAACCGTGCTCACCAAAA+TGG | 0.427916 | 4.3:-20004014 | None:intergenic |
| TATCAAATTGGTGGAAGAAT+GGG | 0.430517 | 4.3:+20003912 | MS.gene70396:CDS |
| TTGATGATATTCAACAAGCT+TGG | 0.432541 | 4.3:+20004067 | MS.gene70396:CDS |
| TGATGATATTCAACAAGCTT+GGG | 0.438064 | 4.3:+20004068 | MS.gene70396:CDS |
| CTATCAAATTGGTGGAAGAA+TGG | 0.440884 | 4.3:+20003911 | MS.gene70396:CDS |
| GGAGCCTGGTTACGTGTTTA+CGG | 0.445779 | 4.3:+20003700 | MS.gene70396:CDS |
| GGCAGCAACTGTTACTCTTA+AGG | 0.449744 | 4.3:+20004548 | MS.gene70396:CDS |
| GATTTGCACCAATGGTCAGC+AGG | 0.455974 | 4.3:+20003658 | MS.gene70396:CDS |
| AGGGGATGTTATATACGAAC+GGG | 0.459585 | 4.3:+20003678 | MS.gene70396:CDS |
| TTGATATTCCACGCATGAAT+CGG | 0.459709 | 4.3:-20003727 | None:intergenic |
| AGATGCTGCTGTTCTAGAAC+AGG | 0.461543 | 4.3:-20004345 | None:intergenic |
| GTGGACTGACTTGTCTTTGG+TGG | 0.472186 | 4.3:-20004711 | None:intergenic |
| GAATTGAATATGTCCGCTCT+TGG | 0.475133 | 4.3:-20004632 | None:intergenic |
| GACCGCTTTAACCCATCATC+CGG | 0.487746 | 4.3:-20004096 | None:intergenic |
| GCGGACATATTCAATTCCCT+TGG | 0.493680 | 4.3:+20004638 | MS.gene70396:CDS |
| TTATATACGAACGGGGAGCC+TGG | 0.500475 | 4.3:+20003686 | MS.gene70396:CDS |
| TGTTTATGCTATCAAATTGG+TGG | 0.512543 | 4.3:+20003903 | MS.gene70396:CDS |
| CTTGGGAAGTTCCGGATGAT+GGG | 0.517764 | 4.3:+20004085 | MS.gene70396:CDS |
| ACAGCTGGTAGCGCTTGAGC+TGG | 0.519395 | 4.3:-20004474 | None:intergenic |
| TGGACTGACTTGTCTTTGGT+GGG | 0.521359 | 4.3:-20004710 | None:intergenic |
| CGTCCGTGACATCCTCCGTT+AGG | 0.528576 | 4.3:-20003960 | None:intergenic |
| TGTTCTCGGATTTGCACCAA+TGG | 0.528850 | 4.3:+20003650 | MS.gene70396:CDS |
| TGCTGCTGTTCTAGAACAGC+TGG | 0.529032 | 4.3:-20004489 | None:intergenic |
| CTCACGTTGTTGCTGATCCA+AGG | 0.529421 | 4.3:-20004655 | None:intergenic |
| ACGTGAGTATGGTACACTAA+AGG | 0.529822 | 4.3:+20004671 | MS.gene70396:CDS |
| TAACATCCCCTGCTGACCAT+TGG | 0.541883 | 4.3:-20003666 | None:intergenic |
| GGAGATGACAGCGTTTGAGT+TGG | 0.542012 | 4.3:-20004189 | None:intergenic |
| GATGAATGTACTTCTGATAG+AGG | 0.544483 | 4.3:+20003796 | MS.gene70396:CDS |
| AGAACAGGTGGTAGCGCTTG+AGG | 0.547075 | 4.3:-20004330 | None:intergenic |
| TACAACTGATTGCTTCAAGC+GGG | 0.548912 | 4.3:+20004527 | MS.gene70396:CDS |
| CATTAGAGAAAATGTCAGAC+AGG | 0.550572 | 4.3:+20004595 | MS.gene70396:CDS |
| TGAAGCTTTAGAGAATCAAA+AGG | 0.554589 | 4.3:+20004434 | MS.gene70396:CDS |
| GCTTATTTCAACATCGTCGG+TGG | 0.560911 | 4.3:+20003840 | MS.gene70396:CDS |
| TACAGATGACAGCTTCAAGC+GGG | 0.561234 | 4.3:+20004380 | MS.gene70396:CDS |
| AAGGTCTGTGTTAAGGATTG+TGG | 0.569887 | 4.3:+20003757 | MS.gene70396:CDS |
| AGCTGGACATCCAGATAACT+CGG | 0.578621 | 4.3:-20004457 | None:intergenic |
| CAGGGGATGTTATATACGAA+CGG | 0.578730 | 4.3:+20003677 | MS.gene70396:CDS |
| TGTGCTTATTTCAACATCGT+CGG | 0.580412 | 4.3:+20003837 | MS.gene70396:CDS |
| AGTACCGTAAACACGTAACC+AGG | 0.583726 | 4.3:-20003704 | None:intergenic |
| ATTCCTAACGGAGGATGTCA+CGG | 0.593022 | 4.3:+20003957 | MS.gene70396:CDS |
| CGGTTCAGCAACTTTCAAAG+AGG | 0.596746 | 4.3:+20004029 | MS.gene70396:CDS |
| ATGGGGTTGTTGTCTTGGTG+AGG | 0.600720 | 4.3:+20003930 | MS.gene70396:CDS |
| TGCTGCTGTTCTAGAACAGG+TGG | 0.603710 | 4.3:-20004342 | None:intergenic |
| TCACGTTGTTGCTGATCCAA+GGG | 0.607156 | 4.3:-20004654 | None:intergenic |
| ATTTGCACCAATGGTCAGCA+GGG | 0.610673 | 4.3:+20003659 | MS.gene70396:CDS |
| GGACGATACGCATCTATCGA+AGG | 0.612318 | 4.3:+20003978 | MS.gene70396:CDS |
| GTGAGTATGGTACACTAAAG+GGG | 0.618226 | 4.3:+20004673 | MS.gene70396:CDS |
| AGGTGGACATCCAATTAACT+CGG | 0.630813 | 4.3:-20004310 | None:intergenic |
| ACGGTACTCCGATTCATGCG+TGG | 0.635892 | 4.3:+20003719 | MS.gene70396:CDS |
| TGGTGAGGATGCATTCCTAA+CGG | 0.636324 | 4.3:+20003945 | MS.gene70396:CDS |
| TTCCGGATGATGGGTTAAAG+CGG | 0.641581 | 4.3:+20004094 | MS.gene70396:CDS |
| ACAGGTGGTAGCGCTTGAGG+TGG | 0.648852 | 4.3:-20004327 | None:intergenic |
| TTACAACTGATTGCTTCAAG+CGG | 0.651572 | 4.3:+20004526 | MS.gene70396:CDS |
| ACTCCGGGGACCTAAATGAG+TGG | 0.655617 | 4.3:-20004730 | None:intergenic |
| ATCAAATTGGTGGAAGAATG+GGG | 0.662397 | 4.3:+20003913 | MS.gene70396:CDS |
| GCAGAATTCAATTCCAAGAG+CGG | 0.665341 | 4.3:+20004619 | MS.gene70396:CDS |
| CAGAGGAGCAACATGCTGAG+AGG | 0.665996 | 4.3:+20004157 | MS.gene70396:CDS |
| TTACAGATGACAGCTTCAAG+CGG | 0.672976 | 4.3:+20004379 | MS.gene70396:CDS |
| TTTGCACCAATGGTCAGCAG+GGG | 0.684210 | 4.3:+20003660 | MS.gene70396:CDS |
| ACGATGTTGAAATAAGCACA+CGG | 0.687783 | 4.3:-20003834 | None:intergenic |
| CGATGTTGAAATAAGCACAC+GGG | 0.704041 | 4.3:-20003833 | None:intergenic |
| TGAGGATGCATTCCTAACGG+AGG | 0.730051 | 4.3:+20003948 | MS.gene70396:CDS |
| AGTATGGTACACTAAAGGGG+AGG | 0.737464 | 4.3:+20004676 | MS.gene70396:CDS |
| TTATTCATGTCAGTTACACG+CGG | 0.759475 | 4.3:+20004232 | MS.gene70396:CDS |
| GGGGATGTTATATACGAACG+GGG | 0.765046 | 4.3:+20003679 | MS.gene70396:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ACATGTTTATGCTATCAAAT+TGG | + | chr4.3:20003900-20003919 | MS.gene70396:CDS | 25.0% |
| !!! | GTGGAATATCAATTTTTTCA+AGG | + | chr4.3:20003738-20003757 | MS.gene70396:CDS | 25.0% |
| !!! | TGAAGTTTTAGAGAAACAAA+AGG | + | chr4.3:20004287-20004306 | MS.gene70396:CDS | 25.0% |
| TATCAAATTGGTGGAAGAAT+GGG | + | chr4.3:20003912-20003931 | MS.gene70396:CDS | 30.0% | |
| TGATGATATTCAACAAGCTT+GGG | + | chr4.3:20004068-20004087 | MS.gene70396:CDS | 30.0% | |
| TGTTTATGCTATCAAATTGG+TGG | + | chr4.3:20003903-20003922 | MS.gene70396:CDS | 30.0% | |
| ! | TTGATGATATTCAACAAGCT+TGG | + | chr4.3:20004067-20004086 | MS.gene70396:CDS | 30.0% |
| !! | TGAAGCTTTAGAGAATCAAA+AGG | + | chr4.3:20004434-20004453 | MS.gene70396:CDS | 30.0% |
| !!! | TTTTTTAGCTACAGTTTCAG+AGG | + | chr4.3:20004140-20004159 | MS.gene70396:CDS | 30.0% |
| !!! | TTTTTTCAAGGTCTGTGTTA+AGG | + | chr4.3:20003750-20003769 | MS.gene70396:CDS | 30.0% |
| AAACAAAAGGCCGAGTTAAT+TGG | + | chr4.3:20004300-20004319 | MS.gene70396:CDS | 35.0% | |
| ACGATGTTGAAATAAGCACA+CGG | - | chr4.3:20003837-20003856 | None:intergenic | 35.0% | |
| ACTACTGAGTTACTCATTGA+TGG | + | chr4.3:20003877-20003896 | MS.gene70396:CDS | 35.0% | |
| ACTGTAGCTAAAAAAGCAGT+TGG | - | chr4.3:20004135-20004154 | None:intergenic | 35.0% | |
| ATCAAATTGGTGGAAGAATG+GGG | + | chr4.3:20003913-20003932 | MS.gene70396:CDS | 35.0% | |
| CATTAGAGAAAATGTCAGAC+AGG | + | chr4.3:20004595-20004614 | MS.gene70396:CDS | 35.0% | |
| CTATCAAATTGGTGGAAGAA+TGG | + | chr4.3:20003911-20003930 | MS.gene70396:CDS | 35.0% | |
| GATGAATGTACTTCTGATAG+AGG | + | chr4.3:20003796-20003815 | MS.gene70396:CDS | 35.0% | |
| GTTTACACCATTCTAAACTC+CGG | - | chr4.3:20004749-20004768 | None:intergenic | 35.0% | |
| TGTGCTTATTTCAACATCGT+CGG | + | chr4.3:20003837-20003856 | MS.gene70396:CDS | 35.0% | |
| TTACAACTGATTGCTTCAAG+CGG | + | chr4.3:20004526-20004545 | MS.gene70396:CDS | 35.0% | |
| TTATTCATGTCAGTTACACG+CGG | + | chr4.3:20004232-20004251 | MS.gene70396:CDS | 35.0% | |
| TTGATATTCCACGCATGAAT+CGG | - | chr4.3:20003730-20003749 | None:intergenic | 35.0% | |
| TTTACACCATTCTAAACTCC+GGG | - | chr4.3:20004748-20004767 | None:intergenic | 35.0% | |
| ! | AGAACAGCAGCATCTTTTTA+AGG | + | chr4.3:20004353-20004372 | MS.gene70396:CDS | 35.0% |
| AAGGTCTGTGTTAAGGATTG+TGG | + | chr4.3:20003757-20003776 | MS.gene70396:CDS | 40.0% | |
| AATCAAAAGGCCGAGTTATC+TGG | + | chr4.3:20004447-20004466 | MS.gene70396:CDS | 40.0% | |
| ACAAGTCAGTCCACTCATTT+AGG | + | chr4.3:20004720-20004739 | MS.gene70396:CDS | 40.0% | |
| ACGTGAGTATGGTACACTAA+AGG | + | chr4.3:20004671-20004690 | MS.gene70396:CDS | 40.0% | |
| AGGGGATGTTATATACGAAC+GGG | + | chr4.3:20003678-20003697 | MS.gene70396:CDS | 40.0% | |
| AGGTGGACATCCAATTAACT+CGG | - | chr4.3:20004313-20004332 | None:intergenic | 40.0% | |
| CAGGGGATGTTATATACGAA+CGG | + | chr4.3:20003677-20003696 | MS.gene70396:CDS | 40.0% | |
| CGATGTTGAAATAAGCACAC+GGG | - | chr4.3:20003836-20003855 | None:intergenic | 40.0% | |
| CGTGAGTATGGTACACTAAA+GGG | + | chr4.3:20004672-20004691 | MS.gene70396:CDS | 40.0% | |
| GAATTGAATATGTCCGCTCT+TGG | - | chr4.3:20004635-20004654 | None:intergenic | 40.0% | |
| GCAGAATTCAATTCCAAGAG+CGG | + | chr4.3:20004619-20004638 | MS.gene70396:CDS | 40.0% | |
| GTGAGTATGGTACACTAAAG+GGG | + | chr4.3:20004673-20004692 | MS.gene70396:CDS | 40.0% | |
| TACAACTGATTGCTTCAAGC+GGG | + | chr4.3:20004527-20004546 | MS.gene70396:CDS | 40.0% | |
| TTACACCATTCTAAACTCCG+GGG | - | chr4.3:20004747-20004766 | None:intergenic | 40.0% | |
| TTACAGATGACAGCTTCAAG+CGG | + | chr4.3:20004379-20004398 | MS.gene70396:CDS | 40.0% | |
| ! | AGAACAGCAGCATCATTTTC+AGG | + | chr4.3:20004500-20004519 | MS.gene70396:CDS | 40.0% |
| ! | GAAGATGTGTCAGACCATTT+TGG | + | chr4.3:20004000-20004019 | MS.gene70396:CDS | 40.0% |
| AAGTTACGCTTCGCTTAGCT+TGG | - | chr4.3:20004782-20004801 | None:intergenic | 45.0% | |
| ACACGCTGCTGATGTGAAAA+AGG | - | chr4.3:20004213-20004232 | None:intergenic | 45.0% | |
| AGCTGGACATCCAGATAACT+CGG | - | chr4.3:20004460-20004479 | None:intergenic | 45.0% | |
| AGTACCGTAAACACGTAACC+AGG | - | chr4.3:20003707-20003726 | None:intergenic | 45.0% | |
| AGTATGGTACACTAAAGGGG+AGG | + | chr4.3:20004676-20004695 | MS.gene70396:CDS | 45.0% | |
| ATTCCTAACGGAGGATGTCA+CGG | + | chr4.3:20003957-20003976 | MS.gene70396:CDS | 45.0% | |
| ATTTGCACCAATGGTCAGCA+GGG | + | chr4.3:20003659-20003678 | MS.gene70396:CDS | 45.0% | |
| CGGTTCAGCAACTTTCAAAG+AGG | + | chr4.3:20004029-20004048 | MS.gene70396:CDS | 45.0% | |
| GAAGAATGGGGTTGTTGTCT+TGG | + | chr4.3:20003925-20003944 | MS.gene70396:CDS | 45.0% | |
| GATCAGCAACAACGTGAGTA+TGG | + | chr4.3:20004660-20004679 | MS.gene70396:CDS | 45.0% | |
| GCGGACATATTCAATTCCCT+TGG | + | chr4.3:20004638-20004657 | MS.gene70396:CDS | 45.0% | |
| GCTTATTTCAACATCGTCGG+TGG | + | chr4.3:20003840-20003859 | MS.gene70396:CDS | 45.0% | |
| GGCAGCAACTGTTACTCTTA+AGG | + | chr4.3:20004548-20004567 | MS.gene70396:CDS | 45.0% | |
| GGGGATGTTATATACGAACG+GGG | + | chr4.3:20003679-20003698 | MS.gene70396:CDS | 45.0% | |
| TACAGATGACAGCTTCAAGC+GGG | + | chr4.3:20004380-20004399 | MS.gene70396:CDS | 45.0% | |
| TCAACAAGCTTGGGAAGTTC+CGG | + | chr4.3:20004077-20004096 | MS.gene70396:CDS | 45.0% | |
| TCACGTTGTTGCTGATCCAA+GGG | - | chr4.3:20004657-20004676 | None:intergenic | 45.0% | |
| TGGTGAGGATGCATTCCTAA+CGG | + | chr4.3:20003945-20003964 | MS.gene70396:CDS | 45.0% | |
| TGTTCTCGGATTTGCACCAA+TGG | + | chr4.3:20003650-20003669 | MS.gene70396:CDS | 45.0% | |
| !! | AGATGCTGCTGTTCTAGAAC+AGG | - | chr4.3:20004348-20004367 | None:intergenic | 45.0% |
| !! | TCAGACCATTTTGGTGAGCA+CGG | + | chr4.3:20004009-20004028 | MS.gene70396:CDS | 45.0% |
| !! | TGAGTGGACTGACTTGTCTT+TGG | - | chr4.3:20004717-20004736 | None:intergenic | 45.0% |
| !! | TGGACTGACTTGTCTTTGGT+GGG | - | chr4.3:20004713-20004732 | None:intergenic | 45.0% |
| !! | TTCCGGATGATGGGTTAAAG+CGG | + | chr4.3:20004094-20004113 | MS.gene70396:CDS | 45.0% |
| AGTCCACTCATTTAGGTCCC+CGG | + | chr4.3:20004727-20004746 | MS.gene70396:intron | 50.0% | |
| ATGGGGTTGTTGTCTTGGTG+AGG | + | chr4.3:20003930-20003949 | MS.gene70396:CDS | 50.0% | |
| CTCACGTTGTTGCTGATCCA+AGG | - | chr4.3:20004658-20004677 | None:intergenic | 50.0% | |
| CTGAACCGTGCTCACCAAAA+TGG | - | chr4.3:20004017-20004036 | None:intergenic | 50.0% | |
| CTTGGGAAGTTCCGGATGAT+GGG | + | chr4.3:20004085-20004104 | MS.gene70396:CDS | 50.0% | |
| GACCGCTTTAACCCATCATC+CGG | - | chr4.3:20004099-20004118 | None:intergenic | 50.0% | |
| GATTTGCACCAATGGTCAGC+AGG | + | chr4.3:20003658-20003677 | MS.gene70396:CDS | 50.0% | |
| GCTAAGCGAAGCGTAACTTC+TGG | + | chr4.3:20004783-20004802 | MS.gene70396:intron | 50.0% | |
| GGACGATACGCATCTATCGA+AGG | + | chr4.3:20003978-20003997 | MS.gene70396:CDS | 50.0% | |
| GGAGATGACAGCGTTTGAGT+TGG | - | chr4.3:20004192-20004211 | None:intergenic | 50.0% | |
| GGAGCCTGGTTACGTGTTTA+CGG | + | chr4.3:20003700-20003719 | MS.gene70396:CDS | 50.0% | |
| TAACATCCCCTGCTGACCAT+TGG | - | chr4.3:20003669-20003688 | None:intergenic | 50.0% | |
| TAGGTCCCCGGAGTTTAGAA+TGG | + | chr4.3:20004739-20004758 | MS.gene70396:intron | 50.0% | |
| TGAGGATGCATTCCTAACGG+AGG | + | chr4.3:20003948-20003967 | MS.gene70396:CDS | 50.0% | |
| TTATATACGAACGGGGAGCC+TGG | + | chr4.3:20003686-20003705 | MS.gene70396:CDS | 50.0% | |
| TTTGCACCAATGGTCAGCAG+GGG | + | chr4.3:20003660-20003679 | MS.gene70396:CDS | 50.0% | |
| !! | GTGGACTGACTTGTCTTTGG+TGG | - | chr4.3:20004714-20004733 | None:intergenic | 50.0% |
| !! | TGCTGCTGTTCTAGAACAGC+TGG | - | chr4.3:20004492-20004511 | None:intergenic | 50.0% |
| !! | TGCTGCTGTTCTAGAACAGG+TGG | - | chr4.3:20004345-20004364 | None:intergenic | 50.0% |
| ACGGTACTCCGATTCATGCG+TGG | + | chr4.3:20003719-20003738 | MS.gene70396:CDS | 55.0% | |
| ACTCCGGGGACCTAAATGAG+TGG | - | chr4.3:20004733-20004752 | None:intergenic | 55.0% | |
| CAGAGGAGCAACATGCTGAG+AGG | + | chr4.3:20004157-20004176 | MS.gene70396:CDS | 55.0% | |
| GCTTGGGAAGTTCCGGATGA+TGG | + | chr4.3:20004084-20004103 | MS.gene70396:CDS | 55.0% | |
| ! | AGAACAGGTGGTAGCGCTTG+AGG | - | chr4.3:20004333-20004352 | None:intergenic | 55.0% |
| CGTCCGTGACATCCTCCGTT+AGG | - | chr4.3:20003963-20003982 | None:intergenic | 60.0% | |
| ! | ACAGCTGGTAGCGCTTGAGC+TGG | - | chr4.3:20004477-20004496 | None:intergenic | 60.0% |
| ! | ACAGGTGGTAGCGCTTGAGG+TGG | - | chr4.3:20004330-20004349 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 20003646 | 20004844 | 20003646 | ID=MS.gene70396 |
| chr4.3 | mRNA | 20003646 | 20004844 | 20003646 | ID=MS.gene70396.t1;Parent=MS.gene70396 |
| chr4.3 | exon | 20003646 | 20004741 | 20003646 | ID=MS.gene70396.t1.exon1;Parent=MS.gene70396.t1 |
| chr4.3 | CDS | 20003646 | 20004741 | 20003646 | ID=cds.MS.gene70396.t1;Parent=MS.gene70396.t1 |
| chr4.3 | exon | 20004822 | 20004844 | 20004822 | ID=MS.gene70396.t1.exon2;Parent=MS.gene70396.t1 |
| chr4.3 | CDS | 20004822 | 20004844 | 20004822 | ID=cds.MS.gene70396.t1;Parent=MS.gene70396.t1 |
| Gene Sequence |
| Protein sequence |
