Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059268.t1 | XP_024630546.1 | 81.6 | 136 | 24 | 1 | 15 | 149 | 1 | 136 | 4.60E-49 | 204.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059268.t1 | A0A396IPL5 | 79.3 | 150 | 30 | 1 | 1 | 149 | 1 | 150 | 3.8e-45 | 190.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059268 | MS.gene070025 | 0.82399 | 1.03E-53 | -1.69E-46 |
| MS.gene059268 | MS.gene41627 | 0.81275 | 3.62E-51 | -1.69E-46 |
| MS.gene059268 | MS.gene75344 | 0.812401 | 4.32E-51 | -1.69E-46 |
| MS.gene059268 | MS.gene83063 | 0.805674 | 1.19E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059268.t1 | MTR_4g102460 | 70.470 | 149 | 41 | 2 | 2 | 149 | 3 | 149 | 1.12e-58 | 191 |
| MS.gene059268.t1 | MTR_8g054490 | 93.333 | 105 | 6 | 1 | 1 | 104 | 1 | 105 | 5.84e-54 | 170 |
| MS.gene059268.t1 | MTR_7g105270 | 73.684 | 133 | 34 | 1 | 18 | 149 | 1 | 133 | 4.20e-50 | 167 |
| MS.gene059268.t1 | MTR_7g034745 | 93.617 | 94 | 5 | 1 | 1 | 93 | 1 | 94 | 1.76e-48 | 152 |
| MS.gene059268.t1 | MTR_7g056297 | 66.917 | 133 | 43 | 1 | 18 | 149 | 1 | 133 | 2.70e-48 | 161 |
| MS.gene059268.t1 | MTR_1g105095 | 60.185 | 108 | 42 | 1 | 27 | 133 | 76 | 183 | 5.09e-37 | 125 |
| MS.gene059268.t1 | MTR_1361s0010 | 74.194 | 62 | 16 | 0 | 92 | 153 | 1 | 62 | 2.60e-24 | 94.7 |
| MS.gene059268.t1 | MTR_7g060240 | 55.882 | 102 | 44 | 1 | 1 | 101 | 1 | 102 | 9.47e-22 | 84.3 |
| MS.gene059268.t1 | MTR_0045s0120 | 67.416 | 89 | 28 | 1 | 18 | 105 | 1 | 89 | 2.15e-21 | 83.6 |
| MS.gene059268.t1 | MTR_6g060120 | 53.333 | 90 | 32 | 1 | 2 | 81 | 3 | 92 | 6.18e-14 | 64.7 |
| MS.gene059268.t1 | MTR_2g076860 | 32.558 | 86 | 58 | 0 | 44 | 129 | 75 | 160 | 7.35e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 22 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGAAACATGCTTCAATT+TGG | 0.257143 | 4.4:+74972509 | MS.gene059268:CDS |
| TTTGGTGGGAAAATCTTAAA+AGG | 0.284790 | 4.4:+74972527 | MS.gene059268:CDS |
| TCTCTGAATGATTGTCTTTG+TGG | 0.337173 | 4.4:-74972343 | None:intergenic |
| CAAAGACCCGTTCAACAGTT+TGG | 0.339906 | 4.4:-74972435 | None:intergenic |
| TGTAGCTTTCCTTCAAAATC+AGG | 0.348866 | 4.4:-74972388 | None:intergenic |
| TTACAATTTCTTGTAACTGC+TGG | 0.367356 | 4.4:-74972234 | None:intergenic |
| TTTGAATGTCTCTAAGTGTT+TGG | 0.368974 | 4.4:-74972189 | None:intergenic |
| AAATGCACAACAAGCACAAT+TGG | 0.413256 | 4.4:+74972255 | MS.gene059268:CDS |
| ATCCAGATGAGTTCGTTGAT+TGG | 0.442139 | 4.4:+74972410 | MS.gene059268:CDS |
| ATCGTCTGATTGCATGTGTT+GGG | 0.445325 | 4.4:-74972281 | None:intergenic |
| AGCCAATCAACGAACTCATC+TGG | 0.446536 | 4.4:-74972412 | None:intergenic |
| TTGGCTCCAAACTGTTGAAC+GGG | 0.451354 | 4.4:+74972429 | MS.gene059268:CDS |
| CATCGTCTGATTGCATGTGT+TGG | 0.472438 | 4.4:-74972282 | None:intergenic |
| AGAAACATGCTTCAATTTGG+TGG | 0.496507 | 4.4:+74972512 | MS.gene059268:CDS |
| AACACTTAGAGACATTCAAA+TGG | 0.502727 | 4.4:+74972192 | MS.gene059268:CDS |
| GAAACATGCTTCAATTTGGT+GGG | 0.515877 | 4.4:+74972513 | MS.gene059268:CDS |
| GATGTAGGTACCACTGTTCA+CGG | 0.543341 | 4.4:+74974691 | MS.gene059268:intron |
| ATTGGCTCCAAACTGTTGAA+CGG | 0.580900 | 4.4:+74972428 | MS.gene059268:CDS |
| ATTCAGAGACAACGACATCA+AGG | 0.588760 | 4.4:+74972357 | MS.gene059268:CDS |
| AAAAGGAGACGTAAGTGTGA+AGG | 0.600789 | 4.4:+74972544 | MS.gene059268:CDS |
| CAATCAATCACCGTGAACAG+TGG | 0.654385 | 4.4:-74974701 | None:intergenic |
| AGACGTGGGAGAAAATGCGT+CGG | 0.687383 | 4.4:+74972581 | MS.gene059268:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGATAATAATGACAATAA+TGG | - | chr4.4:74974502-74974521 | None:intergenic | 15.0% |
| !! | ACAATTATAAAGAAAATGTA+TGG | + | chr4.4:74973424-74973443 | MS.gene059268:intron | 15.0% |
| !!! | ATTATTTTTTTTAAGGTTTG+AGG | + | chr4.4:74974519-74974538 | MS.gene059268:intron | 15.0% |
| !!! | TTTTTTTTCTTTACATAAAG+TGG | + | chr4.4:74974274-74974293 | MS.gene059268:intron | 15.0% |
| !! | ATAAACAAAATCTAGTGAAA+AGG | - | chr4.4:74974479-74974498 | None:intergenic | 20.0% |
| !! | TGAAATATTTGAAGAAGAAA+AGG | + | chr4.4:74972921-74972940 | MS.gene059268:intron | 20.0% |
| !!! | AAATTGGCTTGATAATAATT+AGG | - | chr4.4:74972631-74972650 | None:intergenic | 20.0% |
| !!! | GATTAGATATCTTATTTCAA+GGG | + | chr4.4:74974166-74974185 | MS.gene059268:intron | 20.0% |
| ! | AAAAACACACTAAAAGAATC+AGG | - | chr4.4:74974257-74974276 | None:intergenic | 25.0% |
| ! | AAAGATTCATCATATTCAAC+AGG | - | chr4.4:74973147-74973166 | None:intergenic | 25.0% |
| ! | AATCTAGTAAATGTCAAACA+TGG | - | chr4.4:74973950-74973969 | None:intergenic | 25.0% |
| ! | AATTAGGAGGTAAATACTTA+CGG | - | chr4.4:74972615-74972634 | None:intergenic | 25.0% |
| ! | AGTAATATGACAAATGTTGT+AGG | + | chr4.4:74974557-74974576 | MS.gene059268:intron | 25.0% |
| ! | ATTTGATGAGTTATGTAAAG+TGG | + | chr4.4:74974304-74974323 | MS.gene059268:intron | 25.0% |
| ! | CTCTATGAATGTATTATGTT+GGG | - | chr4.4:74972764-74972783 | None:intergenic | 25.0% |
| ! | GATCCAATATATGATGAATA+TGG | + | chr4.4:74973051-74973070 | MS.gene059268:intron | 25.0% |
| ! | TCTATGAATGTATTATGTTG+GGG | - | chr4.4:74972763-74972782 | None:intergenic | 25.0% |
| ! | TCTCTATGAATGTATTATGT+TGG | - | chr4.4:74972765-74972784 | None:intergenic | 25.0% |
| ! | TGTTGAATATGATGAATCTT+TGG | + | chr4.4:74973146-74973165 | MS.gene059268:intron | 25.0% |
| ! | TTCTTTATAATTGTTGTCGA+TGG | - | chr4.4:74973418-74973437 | None:intergenic | 25.0% |
| !! | AAAAGAAACTTTTAAACTCG+AGG | + | chr4.4:74973739-74973758 | MS.gene059268:intron | 25.0% |
| !! | AAGTTTCTTTTTGATCCTTA+CGG | - | chr4.4:74973730-74973749 | None:intergenic | 25.0% |
| !! | CGATTAGATATCTTATTTCA+AGG | + | chr4.4:74974165-74974184 | MS.gene059268:intron | 25.0% |
| !! | TCTATTTTCAATACTCACAA+AGG | + | chr4.4:74974648-74974667 | MS.gene059268:intron | 25.0% |
| !! | TTAAATGTTTCAAGTGTCAA+GGG | + | chr4.4:74972800-74972819 | MS.gene059268:intron | 25.0% |
| !! | TTGAGAATCGATATGATTTT+TGG | - | chr4.4:74972704-74972723 | None:intergenic | 25.0% |
| !!! | CAACATAGATTGTTTTGATT+TGG | - | chr4.4:74974208-74974227 | None:intergenic | 25.0% |
| AAAGTGAGTTTGATTGAACA+AGG | - | chr4.4:74974624-74974643 | None:intergenic | 30.0% | |
| AACACTTAGAGACATTCAAA+TGG | + | chr4.4:74972192-74972211 | MS.gene059268:CDS | 30.0% | |
| AAGTGAGTTTGATTGAACAA+GGG | - | chr4.4:74974623-74974642 | None:intergenic | 30.0% | |
| AATGACATCATCAACAAAAG+TGG | + | chr4.4:74973261-74973280 | MS.gene059268:intron | 30.0% | |
| AGATGTGATTGAAATCAAGT+TGG | + | chr4.4:74973554-74973573 | MS.gene059268:intron | 30.0% | |
| ATACTTGCCACATTAATCTT+GGG | + | chr4.4:74973466-74973485 | MS.gene059268:intron | 30.0% | |
| ATTAGGAGGTAAATACTTAC+GGG | - | chr4.4:74972614-74972633 | None:intergenic | 30.0% | |
| ATTGTTTGAAGAAGATTCGA+TGG | + | chr4.4:74972957-74972976 | MS.gene059268:intron | 30.0% | |
| CAATGACTTCAATGATGTAA+GGG | - | chr4.4:74973901-74973920 | None:intergenic | 30.0% | |
| CATGGTAGTTGAAATAGTAA+TGG | - | chr4.4:74973979-74973998 | None:intergenic | 30.0% | |
| CATTACTATTTCAACTACCA+TGG | + | chr4.4:74973977-74973996 | MS.gene059268:intron | 30.0% | |
| CTTATTTATAGCAATCCTAG+AGG | - | chr4.4:74974003-74974022 | None:intergenic | 30.0% | |
| GGACCATATTCATCATATAT+TGG | - | chr4.4:74973057-74973076 | None:intergenic | 30.0% | |
| GTGTTTGAAGAAAAAGGAAA+AGG | + | chr4.4:74973027-74973046 | MS.gene059268:intron | 30.0% | |
| TGAAGAAACATGCTTCAATT+TGG | + | chr4.4:74972509-74972528 | MS.gene059268:CDS | 30.0% | |
| TGAATATGATGAATCTTTGG+AGG | + | chr4.4:74973149-74973168 | MS.gene059268:intron | 30.0% | |
| TGTGAGTGAATAGTTATCTT+TGG | + | chr4.4:74974434-74974453 | MS.gene059268:intron | 30.0% | |
| TTACAATTTCTTGTAACTGC+TGG | - | chr4.4:74972237-74972256 | None:intergenic | 30.0% | |
| TTGTTTGAAGAAGATTCGAT+GGG | + | chr4.4:74972958-74972977 | MS.gene059268:intron | 30.0% | |
| TTTACGATTCACACAGTTTA+AGG | - | chr4.4:74972839-74972858 | None:intergenic | 30.0% | |
| TTTGAATGTCTCTAAGTGTT+TGG | - | chr4.4:74972192-74972211 | None:intergenic | 30.0% | |
| TTTGGTGGGAAAATCTTAAA+AGG | + | chr4.4:74972527-74972546 | MS.gene059268:CDS | 30.0% | |
| ! | ACAACTATAACATTTTCCCA+AGG | - | chr4.4:74973705-74973724 | None:intergenic | 30.0% |
| ! | ATATACGATGAAGAGTATGT+TGG | + | chr4.4:74972988-74973007 | MS.gene059268:intron | 30.0% |
| ! | CTTAAATGTTTCAAGTGTCA+AGG | + | chr4.4:74972799-74972818 | MS.gene059268:intron | 30.0% |
| ! | GTAGATATTCCTGATTTTGA+AGG | + | chr4.4:74972379-74972398 | MS.gene059268:CDS | 30.0% |
| ! | TGTGAAGTGTTTGAAGAAAA+AGG | + | chr4.4:74973021-74973040 | MS.gene059268:intron | 30.0% |
| ! | TTGGCTTGATAATAATTAGG+AGG | - | chr4.4:74972628-74972647 | None:intergenic | 30.0% |
| !! | ATTGATTTCACTAGTCTTTG+TGG | - | chr4.4:74974122-74974141 | None:intergenic | 30.0% |
| !! | CTCTAGGATTGCTATAAATA+AGG | + | chr4.4:74974001-74974020 | MS.gene059268:intron | 30.0% |
| !!! | AATCGATATGATTTTTGGTG+TGG | - | chr4.4:74972699-74972718 | None:intergenic | 30.0% |
| !!! | ATCGATATGATTTTTGGTGT+GGG | - | chr4.4:74972698-74972717 | None:intergenic | 30.0% |
| !!! | CAACTGTTTTTGAGCAAAAT+TGG | - | chr4.4:74972647-74972666 | None:intergenic | 30.0% |
| !!! | GACTTTGTTTTATCCTTGAA+TGG | - | chr4.4:74973654-74973673 | None:intergenic | 30.0% |
| AAAAAGCAAGATCAAGACGT+GGG | + | chr4.4:74972567-74972586 | MS.gene059268:CDS | 35.0% | |
| AAATGCACAACAAGCACAAT+TGG | + | chr4.4:74972255-74972274 | MS.gene059268:CDS | 35.0% | |
| AACAAAAGTGGTGAAAACGA+TGG | + | chr4.4:74973273-74973292 | MS.gene059268:intron | 35.0% | |
| AATGCATCATGAATGTCATC+GGG | - | chr4.4:74973078-74973097 | None:intergenic | 35.0% | |
| ACATGTGTCATGACTACATT+AGG | + | chr4.4:74974389-74974408 | MS.gene059268:intron | 35.0% | |
| ACCTAGCAATAGTTCTTCTT+TGG | - | chr4.4:74973202-74973221 | None:intergenic | 35.0% | |
| AGAAACATGCTTCAATTTGG+TGG | + | chr4.4:74972512-74972531 | MS.gene059268:CDS | 35.0% | |
| AGCATGACATTAGTTATGCA+TGG | + | chr4.4:74973806-74973825 | MS.gene059268:intron | 35.0% | |
| ATGGTGTGATGTTATTCCAA+TGG | + | chr4.4:74973443-74973462 | MS.gene059268:intron | 35.0% | |
| ATGTTATAGTTGTTGCCGTA+AGG | + | chr4.4:74973712-74973731 | MS.gene059268:intron | 35.0% | |
| ATTATGTTGGGGTTTGAATG+AGG | - | chr4.4:74972752-74972771 | None:intergenic | 35.0% | |
| CAATGCATCATGAATGTCAT+CGG | - | chr4.4:74973079-74973098 | None:intergenic | 35.0% | |
| CAATGTGTTAAATGCAATGC+TGG | + | chr4.4:74974138-74974157 | MS.gene059268:intron | 35.0% | |
| CCATCATTGAATTCATTGAC+CGG | - | chr4.4:74973588-74973607 | None:intergenic | 35.0% | |
| CTAGTAAATGTCAAACATGG+TGG | - | chr4.4:74973947-74973966 | None:intergenic | 35.0% | |
| GAAACATGCTTCAATTTGGT+GGG | + | chr4.4:74972513-74972532 | MS.gene059268:CDS | 35.0% | |
| GATACTTGCCACATTAATCT+TGG | + | chr4.4:74973465-74973484 | MS.gene059268:intron | 35.0% | |
| GATCTGGGTGATTAATCATT+GGG | - | chr4.4:74973326-74973345 | None:intergenic | 35.0% | |
| GCAATGACTTCAATGATGTA+AGG | - | chr4.4:74973902-74973921 | None:intergenic | 35.0% | |
| GTTTATTTCCTCATTGACGA+TGG | - | chr4.4:74972869-74972888 | None:intergenic | 35.0% | |
| GTTTGAATGAGGAAATAGGT+TGG | - | chr4.4:74972741-74972760 | None:intergenic | 35.0% | |
| TAAGGGATGATGTAAATGCA+AGG | - | chr4.4:74973851-74973870 | None:intergenic | 35.0% | |
| TAATGTAGTCATGACACATG+TGG | - | chr4.4:74974390-74974409 | None:intergenic | 35.0% | |
| TAGCAATAGTTCTTCTTTGG+CGG | - | chr4.4:74973199-74973218 | None:intergenic | 35.0% | |
| TCATGATGCATTGGAAAAAG+AGG | + | chr4.4:74973086-74973105 | MS.gene059268:intron | 35.0% | |
| TCTCTGAATGATTGTCTTTG+TGG | - | chr4.4:74972346-74972365 | None:intergenic | 35.0% | |
| TGTAGCTTTCCTTCAAAATC+AGG | - | chr4.4:74972391-74972410 | None:intergenic | 35.0% | |
| TTAATGTGGCAAGTATCCAT+TGG | - | chr4.4:74973462-74973481 | None:intergenic | 35.0% | |
| ! | ACTATAACATTTTCCCAAGG+TGG | - | chr4.4:74973702-74973721 | None:intergenic | 35.0% |
| !! | GAAGAAGTATTCAAGCTACT+TGG | + | chr4.4:74973609-74973628 | MS.gene059268:intron | 35.0% |
| !!! | AGGTTGGTATGAAGGTTTTT+TGG | - | chr4.4:74972671-74972690 | None:intergenic | 35.0% |
| !!! | GGTTGGTATGAAGGTTTTTT+GGG | - | chr4.4:74972670-74972689 | None:intergenic | 35.0% |
| AAAAGGAGACGTAAGTGTGA+AGG | + | chr4.4:74972544-74972563 | MS.gene059268:CDS | 40.0% | |
| AACCTCTGACTTACTAGATG+AGG | - | chr4.4:74974350-74974369 | None:intergenic | 40.0% | |
| AAGCTGCAATGGTTCAACAA+GGG | + | chr4.4:74973351-74973370 | MS.gene059268:intron | 40.0% | |
| AAGGTCTCCCAAGATTAATG+TGG | - | chr4.4:74973476-74973495 | None:intergenic | 40.0% | |
| ACTCACAATGGAACCATTCA+AGG | + | chr4.4:74973638-74973657 | MS.gene059268:intron | 40.0% | |
| ACTTGGACTTTCACTCACAA+TGG | + | chr4.4:74973626-74973645 | MS.gene059268:intron | 40.0% | |
| AGAAGCCATGTCTGTGAAAT+GGG | - | chr4.4:74973241-74973260 | None:intergenic | 40.0% | |
| AGTATTCACCATCGTCAATG+AGG | + | chr4.4:74972858-74972877 | MS.gene059268:intron | 40.0% | |
| ATCCAGATGAGTTCGTTGAT+TGG | + | chr4.4:74972410-74972429 | MS.gene059268:CDS | 40.0% | |
| ATCGTCTGATTGCATGTGTT+GGG | - | chr4.4:74972284-74972303 | None:intergenic | 40.0% | |
| ATGATGTAAGGGATGATGCA+AGG | - | chr4.4:74973890-74973909 | None:intergenic | 40.0% | |
| ATGGTTCAACAAGGGTAATG+AGG | + | chr4.4:74973359-74973378 | MS.gene059268:intron | 40.0% | |
| ATTCAGAGACAACGACATCA+AGG | + | chr4.4:74972357-74972376 | MS.gene059268:CDS | 40.0% | |
| ATTGCAGCTTGTATGGATCT+GGG | - | chr4.4:74973341-74973360 | None:intergenic | 40.0% | |
| CCGGTCAATGAATTCAATGA+TGG | + | chr4.4:74973585-74973604 | MS.gene059268:intron | 40.0% | |
| CGATGACATTCATGATGCAT+TGG | + | chr4.4:74973077-74973096 | MS.gene059268:intron | 40.0% | |
| CTCATTTGAGAGTTAGAGAG+TGG | + | chr4.4:74974076-74974095 | MS.gene059268:intron | 40.0% | |
| GAAAAAGCAAGATCAAGACG+TGG | + | chr4.4:74972566-74972585 | MS.gene059268:CDS | 40.0% | |
| GCCAAAGAAGAACTATTGCT+AGG | + | chr4.4:74973198-74973217 | MS.gene059268:intron | 40.0% | |
| GGATCTGGGTGATTAATCAT+TGG | - | chr4.4:74973327-74973346 | None:intergenic | 40.0% | |
| GGATGATGTAAATGCAAGGT+AGG | - | chr4.4:74973847-74973866 | None:intergenic | 40.0% | |
| GTAGGACTTCAATGAGGTAA+GGG | - | chr4.4:74973868-74973887 | None:intergenic | 40.0% | |
| TAGAAGCCATGTCTGTGAAA+TGG | - | chr4.4:74973242-74973261 | None:intergenic | 40.0% | |
| TCATTCTGTATCATTCTCCC+CGG | - | chr4.4:74973781-74973800 | None:intergenic | 40.0% | |
| TGATGTAAATGCAAGGTAGG+TGG | - | chr4.4:74973844-74973863 | None:intergenic | 40.0% | |
| TGGGGTTTGAATGAGGAAAT+AGG | - | chr4.4:74972745-74972764 | None:intergenic | 40.0% | |
| TTGAACCATTGCAGCTTGTA+TGG | - | chr4.4:74973348-74973367 | None:intergenic | 40.0% | |
| TTGAATTCATTGACCGGTAG+AGG | - | chr4.4:74973582-74973601 | None:intergenic | 40.0% | |
| ! | ATTGGCTCCAAACTGTTGAA+CGG | + | chr4.4:74972428-74972447 | MS.gene059268:CDS | 40.0% |
| ! | TGAATGAGGAAATAGGTTGG+TGG | - | chr4.4:74972738-74972757 | None:intergenic | 40.0% |
| ! | TGTTTCAAGTGTCAAGGGTA+TGG | + | chr4.4:74972805-74972824 | MS.gene059268:intron | 40.0% |
| ! | TTAGAGAGTGGATTCTCTCT+TGG | + | chr4.4:74974088-74974107 | MS.gene059268:intron | 40.0% |
| !! | CTGTTTGTACTGACTGATGT+AGG | + | chr4.4:74974676-74974695 | MS.gene059268:intron | 40.0% |
| !! | GAATGAGGAAATAGGTTGGT+GGG | - | chr4.4:74972737-74972756 | None:intergenic | 40.0% |
| !!! | GTTTGGTCGTTTTTTCTTCG+AGG | - | chr4.4:74972175-74972194 | None:intergenic | 40.0% |
| !!! | TGATTTTTGGTGTGGGAAAG+AGG | - | chr4.4:74972691-74972710 | None:intergenic | 40.0% |
| !!! | TTTTAAGGTTTGAGGCGTGA+AGG | + | chr4.4:74974527-74974546 | MS.gene059268:intron | 40.0% |
| AAGGGTTCCTGATTCTCGAA+GGG | - | chr4.4:74974605-74974624 | None:intergenic | 45.0% | |
| AAGTGGTAGCCTGACATGAA+AGG | + | chr4.4:74974321-74974340 | MS.gene059268:intron | 45.0% | |
| AGCCAATCAACGAACTCATC+TGG | - | chr4.4:74972415-74972434 | None:intergenic | 45.0% | |
| ATGAGGTGACCTTTCATGTC+AGG | - | chr4.4:74974333-74974352 | None:intergenic | 45.0% | |
| ATGGTGGCTTCAATGAGGTA+AGG | - | chr4.4:74973931-74973950 | None:intergenic | 45.0% | |
| CAAACATGGTGGCTTCAATG+AGG | - | chr4.4:74973936-74973955 | None:intergenic | 45.0% | |
| CAAAGACCCGTTCAACAGTT+TGG | - | chr4.4:74972438-74972457 | None:intergenic | 45.0% | |
| CAACACCCATTTCACAGACA+TGG | + | chr4.4:74973233-74973252 | MS.gene059268:intron | 45.0% | |
| CAAGAATCCCTTCGAGAATC+AGG | + | chr4.4:74974595-74974614 | MS.gene059268:intron | 45.0% | |
| CAAGCTGCAATGGTTCAACA+AGG | + | chr4.4:74973350-74973369 | MS.gene059268:intron | 45.0% | |
| CACCTCATCTAGTAAGTCAG+AGG | + | chr4.4:74974345-74974364 | MS.gene059268:intron | 45.0% | |
| CAGATCCATACAAGCTGCAA+TGG | + | chr4.4:74973340-74973359 | MS.gene059268:intron | 45.0% | |
| CATCGTCTGATTGCATGTGT+TGG | - | chr4.4:74972285-74972304 | None:intergenic | 45.0% | |
| CATTCTGTATCATTCTCCCC+GGG | - | chr4.4:74973780-74973799 | None:intergenic | 45.0% | |
| CATTGCAGCTTGTATGGATC+TGG | - | chr4.4:74973342-74973361 | None:intergenic | 45.0% | |
| CGAAGGGATTCTTGGAGTTT+AGG | - | chr4.4:74974589-74974608 | None:intergenic | 45.0% | |
| CTGATTCTCGAAGGGATTCT+TGG | - | chr4.4:74974597-74974616 | None:intergenic | 45.0% | |
| GATGTAGGTACCACTGTTCA+CGG | + | chr4.4:74974691-74974710 | MS.gene059268:intron | 45.0% | |
| GGGATTCTTGGAGTTTAGGA+TGG | - | chr4.4:74974585-74974604 | None:intergenic | 45.0% | |
| GGTAGGACTTCAATGAGGTA+AGG | - | chr4.4:74973869-74973888 | None:intergenic | 45.0% | |
| TATAGCAATCCTAGAGGCCA+TGG | - | chr4.4:74973997-74974016 | None:intergenic | 45.0% | |
| TGCAAGGTAGGACTTCAATG+AGG | - | chr4.4:74973874-74973893 | None:intergenic | 45.0% | |
| TGGTGGCTTCAATGAGGTAA+GGG | - | chr4.4:74973930-74973949 | None:intergenic | 45.0% | |
| TGTAAATGCAAGGTAGGTGG+TGG | - | chr4.4:74973841-74973860 | None:intergenic | 45.0% | |
| TGTAAGGGATGATGCAAGGT+AGG | - | chr4.4:74973886-74973905 | None:intergenic | 45.0% | |
| TTGGCTCCAAACTGTTGAAC+GGG | + | chr4.4:74972429-74972448 | MS.gene059268:CDS | 45.0% | |
| TTTCAACTACCATGGCCTCT+AGG | + | chr4.4:74973985-74974004 | MS.gene059268:intron | 45.0% | |
| ! | ACATTTTCCCAAGGTGGCTT+AGG | - | chr4.4:74973696-74973715 | None:intergenic | 45.0% |
| !! | AATCAAGTTGGCACCTCTAC+CGG | + | chr4.4:74973566-74973585 | MS.gene059268:intron | 45.0% |
| !! | GAAATAGGTTGGTGGGTATG+TGG | - | chr4.4:74972730-74972749 | None:intergenic | 45.0% |
| !! | TGGGAAAGAGGTTGGTATGA+AGG | - | chr4.4:74972679-74972698 | None:intergenic | 45.0% |
| !! | TTTTGGTGTGGGAAAGAGGT+TGG | - | chr4.4:74972687-74972706 | None:intergenic | 45.0% |
| !!! | TATTATCATTATTTTTTTTA+AGG | + | chr4.4:74974512-74974531 | MS.gene059268:intron | 5.0% |
| AGACGTGGGAGAAAATGCGT+CGG | + | chr4.4:74972581-74972600 | MS.gene059268:CDS | 50.0% | |
| AGGACGAGTTCTGTTCAACC+CGG | + | chr4.4:74973759-74973778 | MS.gene059268:intron | 50.0% | |
| CAAGGGTTCCTGATTCTCGA+AGG | - | chr4.4:74974606-74974625 | None:intergenic | 50.0% | |
| GATCGTCGCGCATTATACGA+TGG | + | chr4.4:74973504-74973523 | MS.gene059268:intron | 50.0% | |
| GCGCGACGATCATATTGACA+AGG | - | chr4.4:74973495-74973514 | None:intergenic | 50.0% | |
| TCCAGTTCCTAAGCCACCTT+GGG | + | chr4.4:74973686-74973705 | MS.gene059268:intron | 50.0% | |
| GACGAGTTCTGTTCAACCCG+GGG | + | chr4.4:74973761-74973780 | MS.gene059268:intron | 55.0% | |
| GGACGAGTTCTGTTCAACCC+GGG | + | chr4.4:74973760-74973779 | MS.gene059268:intron | 55.0% | |
| GTCCAGTTCCTAAGCCACCT+TGG | + | chr4.4:74973685-74973704 | MS.gene059268:intron | 55.0% | |
| TCCCAAGGTGGCTTAGGAAC+TGG | - | chr4.4:74973690-74973709 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 74972169 | 74974720 | 74972169 | ID=MS.gene059268 |
| chr4.4 | mRNA | 74972169 | 74974720 | 74972169 | ID=MS.gene059268.t1;Parent=MS.gene059268 |
| chr4.4 | exon | 74972169 | 74972613 | 74972169 | ID=MS.gene059268.t1.exon1;Parent=MS.gene059268.t1 |
| chr4.4 | CDS | 74972169 | 74972613 | 74972169 | ID=cds.MS.gene059268.t1;Parent=MS.gene059268.t1 |
| chr4.4 | exon | 74974698 | 74974720 | 74974698 | ID=MS.gene059268.t1.exon2;Parent=MS.gene059268.t1 |
| chr4.4 | CDS | 74974698 | 74974720 | 74974698 | ID=cds.MS.gene059268.t1;Parent=MS.gene059268.t1 |
| Gene Sequence |
| Protein sequence |
