Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070025.t1 | XP_003604990.1 | 99.5 | 219 | 1 | 0 | 1 | 219 | 1 | 219 | 1.40E-99 | 372.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070025.t1 | O48850 | 73.5 | 219 | 58 | 0 | 1 | 219 | 66 | 284 | 2.3e-87 | 323.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070025.t1 | G7JUL3 | 99.5 | 219 | 1 | 0 | 1 | 219 | 1 | 219 | 9.9e-100 | 372.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049181 | MS.gene070025 | 0.802303 | 5.98E-49 | -1.69E-46 |
| MS.gene04918 | MS.gene070025 | 0.819119 | 1.37E-52 | -1.69E-46 |
| MS.gene049197 | MS.gene070025 | 0.821124 | 4.77E-53 | -1.69E-46 |
| MS.gene04919 | MS.gene070025 | 0.809295 | 2.03E-50 | -1.69E-46 |
| MS.gene04920 | MS.gene070025 | 0.822892 | 1.86E-53 | -1.69E-46 |
| MS.gene049680 | MS.gene070025 | 0.83024 | 3.28E-55 | -1.69E-46 |
| MS.gene049807 | MS.gene070025 | 0.808534 | 2.95E-50 | -1.69E-46 |
| MS.gene050945 | MS.gene070025 | 0.869539 | 2.87E-66 | -1.69E-46 |
| MS.gene051019 | MS.gene070025 | 0.820778 | 5.73E-53 | -1.69E-46 |
| MS.gene051043 | MS.gene070025 | 0.824121 | 9.58E-54 | -1.69E-46 |
| MS.gene051234 | MS.gene070025 | 0.823221 | 1.56E-53 | -1.69E-46 |
| MS.gene051538 | MS.gene070025 | 0.808373 | 3.20E-50 | -1.69E-46 |
| MS.gene051637 | MS.gene070025 | 0.805598 | 1.24E-49 | -1.69E-46 |
| MS.gene051699 | MS.gene070025 | 0.855382 | 6.55E-62 | -1.69E-46 |
| MS.gene051959 | MS.gene070025 | 0.836287 | 1.02E-56 | -1.69E-46 |
| MS.gene051960 | MS.gene070025 | 0.843002 | 1.83E-58 | -1.69E-46 |
| MS.gene052072 | MS.gene070025 | 0.801524 | 8.65E-49 | -1.69E-46 |
| MS.gene052533 | MS.gene070025 | 0.864026 | 1.63E-64 | -1.69E-46 |
| MS.gene052570 | MS.gene070025 | 0.82191 | 3.14E-53 | -1.69E-46 |
| MS.gene052579 | MS.gene070025 | 0.800503 | 1.40E-48 | -1.69E-46 |
| MS.gene052793 | MS.gene070025 | 0.841159 | 5.63E-58 | -1.69E-46 |
| MS.gene053272 | MS.gene070025 | -0.810668 | 1.03E-50 | -1.69E-46 |
| MS.gene053495 | MS.gene070025 | -0.806341 | 8.62E-50 | -1.69E-46 |
| MS.gene054004 | MS.gene070025 | 0.824525 | 7.70E-54 | -1.69E-46 |
| MS.gene054142 | MS.gene070025 | 0.81128 | 7.58E-51 | -1.69E-46 |
| MS.gene054178 | MS.gene070025 | 0.804924 | 1.71E-49 | -1.69E-46 |
| MS.gene054413 | MS.gene070025 | 0.868656 | 5.55E-66 | -1.69E-46 |
| MS.gene055150 | MS.gene070025 | 0.85817 | 9.90E-63 | -1.69E-46 |
| MS.gene055339 | MS.gene070025 | 0.803125 | 4.05E-49 | -1.69E-46 |
| MS.gene055506 | MS.gene070025 | 0.855422 | 6.38E-62 | -1.69E-46 |
| MS.gene056082 | MS.gene070025 | 0.824843 | 6.48E-54 | -1.69E-46 |
| MS.gene056677 | MS.gene070025 | 0.818313 | 2.09E-52 | -1.69E-46 |
| MS.gene056699 | MS.gene070025 | 0.800295 | 1.54E-48 | -1.69E-46 |
| MS.gene057102 | MS.gene070025 | 0.853053 | 3.08E-61 | -1.69E-46 |
| MS.gene057148 | MS.gene070025 | -0.825737 | 3.98E-54 | -1.69E-46 |
| MS.gene057684 | MS.gene070025 | -0.829312 | 5.52E-55 | -1.69E-46 |
| MS.gene058095 | MS.gene070025 | 0.812788 | 3.55E-51 | -1.69E-46 |
| MS.gene059268 | MS.gene070025 | 0.82399 | 1.03E-53 | -1.69E-46 |
| MS.gene05952 | MS.gene070025 | 0.818842 | 1.59E-52 | -1.69E-46 |
| MS.gene059778 | MS.gene070025 | 0.830766 | 2.44E-55 | -1.69E-46 |
| MS.gene059802 | MS.gene070025 | 0.807588 | 4.70E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene070025 | -0.879106 | 1.63E-69 | -1.69E-46 |
| MS.gene059901 | MS.gene070025 | -0.808594 | 2.87E-50 | -1.69E-46 |
| MS.gene06023 | MS.gene070025 | 0.807713 | 4.42E-50 | -1.69E-46 |
| MS.gene060338 | MS.gene070025 | 0.808648 | 2.79E-50 | -1.69E-46 |
| MS.gene060522 | MS.gene070025 | 0.82933 | 5.47E-55 | -1.69E-46 |
| MS.gene060937 | MS.gene070025 | 0.816232 | 6.15E-52 | -1.69E-46 |
| MS.gene061100 | MS.gene070025 | 0.825067 | 5.74E-54 | -1.69E-46 |
| MS.gene061160 | MS.gene070025 | 0.804582 | 2.02E-49 | -1.69E-46 |
| MS.gene061188 | MS.gene070025 | 0.811979 | 5.34E-51 | -1.69E-46 |
| MS.gene061243 | MS.gene070025 | 0.822925 | 1.82E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070025.t1 | MTR_4g022570 | 99.543 | 219 | 1 | 0 | 1 | 219 | 1 | 219 | 3.56e-165 | 454 |
| MS.gene070025.t1 | MTR_1g047720 | 78.995 | 219 | 46 | 0 | 1 | 219 | 1 | 219 | 2.90e-139 | 389 |
| MS.gene070025.t1 | MTR_7g058900 | 84.018 | 219 | 35 | 0 | 1 | 219 | 1 | 219 | 4.44e-129 | 363 |
| MS.gene070025.t1 | MTR_2g436870 | 71.233 | 219 | 63 | 0 | 1 | 219 | 1 | 219 | 2.24e-122 | 346 |
| MS.gene070025.t1 | MTR_4g083490 | 79.793 | 193 | 39 | 0 | 3 | 195 | 5 | 197 | 7.71e-122 | 344 |
| MS.gene070025.t1 | MTR_2g028790 | 74.227 | 194 | 50 | 0 | 2 | 195 | 6 | 199 | 1.38e-115 | 328 |
| MS.gene070025.t1 | MTR_7g058640 | 74.872 | 195 | 49 | 0 | 1 | 195 | 1 | 195 | 9.32e-111 | 316 |
| MS.gene070025.t1 | MTR_1g111890 | 56.303 | 238 | 85 | 1 | 1 | 219 | 1 | 238 | 1.75e-101 | 294 |
| MS.gene070025.t1 | MTR_7g058640 | 74.419 | 172 | 44 | 0 | 1 | 172 | 1 | 172 | 2.74e-96 | 279 |
| MS.gene070025.t1 | MTR_1g047710 | 79.839 | 124 | 25 | 0 | 64 | 187 | 12 | 135 | 4.40e-74 | 221 |
| MS.gene070025.t1 | MTR_4g022470 | 95.370 | 108 | 5 | 0 | 64 | 171 | 10 | 117 | 4.06e-71 | 212 |
| MS.gene070025.t1 | MTR_7g058640 | 77.778 | 117 | 26 | 0 | 79 | 195 | 1 | 117 | 5.65e-64 | 195 |
| MS.gene070025.t1 | MTR_5g089370 | 39.151 | 212 | 126 | 3 | 6 | 216 | 3 | 212 | 3.11e-49 | 160 |
| MS.gene070025.t1 | MTR_4g052550 | 36.279 | 215 | 134 | 3 | 5 | 218 | 2 | 214 | 8.05e-46 | 151 |
| MS.gene070025.t1 | MTR_4g115390 | 33.180 | 217 | 136 | 5 | 6 | 216 | 3 | 216 | 1.08e-40 | 139 |
| MS.gene070025.t1 | MTR_4g022550 | 98.387 | 62 | 1 | 0 | 158 | 219 | 10 | 71 | 2.64e-38 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070025.t1 | AT1G04760 | 80.365 | 219 | 43 | 0 | 1 | 219 | 1 | 219 | 4.70e-133 | 373 |
| MS.gene070025.t1 | AT1G04760 | 80.365 | 219 | 43 | 0 | 1 | 219 | 1 | 219 | 4.70e-133 | 373 |
| MS.gene070025.t1 | AT1G04750 | 83.105 | 219 | 37 | 0 | 1 | 219 | 1 | 219 | 7.42e-129 | 362 |
| MS.gene070025.t1 | AT2G32670 | 82.192 | 219 | 39 | 0 | 1 | 219 | 66 | 284 | 1.41e-128 | 364 |
| MS.gene070025.t1 | AT2G33120 | 83.105 | 219 | 37 | 0 | 1 | 219 | 1 | 219 | 2.28e-128 | 361 |
| MS.gene070025.t1 | AT2G33120 | 79.736 | 227 | 38 | 1 | 1 | 219 | 1 | 227 | 3.68e-125 | 353 |
| MS.gene070025.t1 | AT3G54300 | 56.723 | 238 | 84 | 2 | 1 | 219 | 1 | 238 | 2.23e-100 | 291 |
| MS.gene070025.t1 | AT3G54300 | 56.723 | 238 | 84 | 2 | 1 | 219 | 1 | 238 | 2.23e-100 | 291 |
| MS.gene070025.t1 | AT3G54300 | 56.723 | 238 | 84 | 2 | 1 | 219 | 1 | 238 | 2.23e-100 | 291 |
| MS.gene070025.t1 | AT2G33110 | 67.580 | 219 | 67 | 1 | 1 | 219 | 1 | 215 | 1.48e-96 | 280 |
| MS.gene070025.t1 | AT4G15780 | 70.391 | 179 | 52 | 1 | 1 | 178 | 1 | 179 | 4.29e-95 | 275 |
| MS.gene070025.t1 | AT2G33110 | 69.753 | 162 | 49 | 0 | 1 | 162 | 1 | 162 | 6.20e-85 | 250 |
| MS.gene070025.t1 | AT1G04750 | 84.397 | 141 | 22 | 0 | 79 | 219 | 1 | 141 | 4.18e-74 | 221 |
| MS.gene070025.t1 | AT1G04750 | 84.397 | 141 | 22 | 0 | 79 | 219 | 1 | 141 | 4.18e-74 | 221 |
| MS.gene070025.t1 | AT1G04750 | 84.397 | 141 | 22 | 0 | 79 | 219 | 1 | 141 | 4.18e-74 | 221 |
| MS.gene070025.t1 | AT5G11150 | 41.284 | 218 | 120 | 6 | 5 | 218 | 2 | 215 | 1.22e-52 | 169 |
| MS.gene070025.t1 | AT5G11150 | 40.553 | 217 | 123 | 5 | 5 | 218 | 2 | 215 | 2.09e-52 | 169 |
| MS.gene070025.t1 | AT5G22360 | 37.963 | 216 | 130 | 3 | 5 | 218 | 2 | 215 | 1.09e-50 | 164 |
| MS.gene070025.t1 | AT4G32150 | 38.498 | 213 | 128 | 3 | 5 | 216 | 2 | 212 | 3.73e-48 | 157 |
| MS.gene070025.t1 | AT2G25340 | 37.850 | 214 | 128 | 4 | 5 | 216 | 2 | 212 | 2.19e-43 | 145 |
| MS.gene070025.t1 | AT2G33120 | 88.372 | 86 | 10 | 0 | 134 | 219 | 52 | 137 | 3.79e-36 | 124 |
| MS.gene070025.t1 | AT3G24890 | 53.191 | 94 | 38 | 2 | 113 | 200 | 14 | 107 | 5.57e-25 | 95.5 |
| MS.gene070025.t1 | AT3G24890 | 53.125 | 64 | 26 | 1 | 113 | 176 | 14 | 73 | 2.01e-15 | 68.9 |
| MS.gene070025.t1 | AT3G24890 | 53.125 | 64 | 26 | 1 | 113 | 176 | 14 | 73 | 2.01e-15 | 68.9 |
| MS.gene070025.t1 | AT3G24890 | 53.125 | 64 | 26 | 1 | 113 | 176 | 14 | 73 | 2.01e-15 | 68.9 |
| MS.gene070025.t1 | AT3G24890 | 53.125 | 64 | 26 | 1 | 113 | 176 | 14 | 73 | 2.01e-15 | 68.9 |
Find 43 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGTCTTAACAAAGAATT+TGG | 0.112791 | 4.3:+76020202 | MS.gene070025:CDS |
| TTGTGCAGGCACAAGATTTC+AGG | 0.249513 | 4.3:+76022228 | MS.gene070025:intron |
| GGGAGAGAAGATTGAGGTTT+TGG | 0.250137 | 4.3:+76021574 | MS.gene070025:CDS |
| ACCACATCTTTCTCCTCAAT+TGG | 0.292197 | 4.3:-76022262 | None:intergenic |
| TTCAGCTTCCTCGTCGATAA+TGG | 0.292725 | 4.3:+76018937 | MS.gene070025:CDS |
| GTTATGTGCAGGTTATTGAT+AGG | 0.320869 | 4.3:+76021552 | MS.gene070025:intron |
| TGCATCTGCTCCTTCAACTT+TGG | 0.346126 | 4.3:-76020311 | None:intergenic |
| ATACGTTCAAGAAAAGCTAT+TGG | 0.353729 | 4.3:-76020124 | None:intergenic |
| GCAAGTTTGCTAACTTCCTC+TGG | 0.381827 | 4.3:-76020350 | None:intergenic |
| ATCATTGATCTATAGCTTTG+TGG | 0.397799 | 4.3:+76018786 | MS.gene070025:CDS |
| AACTTCCTGCTTCTAACAAC+AGG | 0.400029 | 4.3:+76018887 | MS.gene070025:CDS |
| AACTGAGAACCTTCGCTCTC+AGG | 0.426253 | 4.3:+76021604 | MS.gene070025:CDS |
| CCACATCTTTCTCCTCAATT+GGG | 0.430467 | 4.3:-76022261 | None:intergenic |
| GGCACAAGATTTCAGGCAGC+AGG | 0.435566 | 4.3:+76022235 | MS.gene070025:intron |
| TGAAGTCAAAGGAGTTATGA+TGG | 0.459537 | 4.3:+76020394 | MS.gene070025:CDS |
| TTATGTGCAGGTTATTGATA+GGG | 0.472672 | 4.3:+76021553 | MS.gene070025:intron |
| ATTGTTCTTTCTGTGTGCCA+TGG | 0.487473 | 4.3:+76022344 | MS.gene070025:CDS |
| ATCTATAGCTTTGTGGCTCG+TGG | 0.490761 | 4.3:+76018793 | MS.gene070025:CDS |
| TAGCTTTGTGGCTCGTGGTA+CGG | 0.495371 | 4.3:+76018798 | MS.gene070025:CDS |
| ATGCTTTAGACCAAAGTTGA+AGG | 0.496438 | 4.3:+76020301 | MS.gene070025:intron |
| AAAGTCTTAACAAAGAATTT+GGG | 0.498770 | 4.3:+76020203 | MS.gene070025:CDS |
| TGATAGGGGAGAGAAGATTG+AGG | 0.506422 | 4.3:+76021568 | MS.gene070025:CDS |
| GTAAACCTGTTGTTAGAAGC+AGG | 0.509943 | 4.3:-76018892 | None:intergenic |
| TTGAAGACACTGGAAAGCTA+TGG | 0.538078 | 4.3:-76018863 | None:intergenic |
| AGGTTTACTTACAACTGTGA+TGG | 0.540715 | 4.3:+76018907 | MS.gene070025:CDS |
| TTTAATAAAAGATATGGTGG+AGG | 0.542291 | 4.3:+76020157 | MS.gene070025:CDS |
| TATGTGCAGGTTATTGATAG+GGG | 0.549992 | 4.3:+76021554 | MS.gene070025:intron |
| GTTGTAGCAGTGGAGTCTGT+TGG | 0.563744 | 4.3:+76020091 | MS.gene070025:CDS |
| GGCAGCAGGGAACCCAATTG+AGG | 0.564168 | 4.3:+76022249 | MS.gene070025:CDS |
| GCGGAGTACAGTGACTTCAC+AGG | 0.572690 | 4.3:+76018829 | MS.gene070025:CDS |
| TAAGTTAACAACTGAAGCCA+TGG | 0.574043 | 4.3:-76022361 | None:intergenic |
| GCTCAAGTTTCTGAAGTCAA+AGG | 0.586109 | 4.3:+76020383 | MS.gene070025:CDS |
| AGCTTACTGTGTTGTAGCAG+TGG | 0.596996 | 4.3:+76020081 | MS.gene070025:intron |
| TCGTGGTACGGTCATTCTTG+CGG | 0.603469 | 4.3:+76018810 | MS.gene070025:CDS |
| GCACAAGATTTCAGGCAGCA+GGG | 0.625497 | 4.3:+76022236 | MS.gene070025:CDS |
| ATTATCGACGAGGAAGCTGA+AGG | 0.649726 | 4.3:-76018935 | None:intergenic |
| CCCAATTGAGGAGAAAGATG+TGG | 0.650037 | 4.3:+76022261 | MS.gene070025:CDS |
| AAGGTCGAACCTGAGAGCGA+AGG | 0.664624 | 4.3:-76021613 | None:intergenic |
| ATATTGTGTGGAACATCCAG+AGG | 0.668552 | 4.3:+76020334 | MS.gene070025:CDS |
| AAGACACTGGAAAGCTATGG+TGG | 0.671924 | 4.3:-76018860 | None:intergenic |
| GGAGCAGATGCAATATTGTG+TGG | 0.680494 | 4.3:+76020322 | MS.gene070025:CDS |
| TACTGAATCCATTATCGACG+AGG | 0.683208 | 4.3:-76018945 | None:intergenic |
| TATGATGGAAAATATCGACA+AGG | 0.735916 | 4.3:+76020409 | MS.gene070025:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATATGTAAATTGAAAT+AGG | + | chr4.3:76021683-76021702 | MS.gene070025:intron | 10.0% |
| !!! | TTATCTGTTATTTATATTTT+TGG | + | chr4.3:76022108-76022127 | MS.gene070025:intron | 10.0% |
| !!! | TTTTTACAAAACAAAAAATA+AGG | + | chr4.3:76019137-76019156 | MS.gene070025:intron | 10.0% |
| !! | AAAACGAACAATAAAATTAA+AGG | - | chr4.3:76021635-76021654 | None:intergenic | 15.0% |
| !! | AAATTTCATATAGTCATAAA+TGG | - | chr4.3:76021230-76021249 | None:intergenic | 15.0% |
| !! | AATATCGATATTATTAACTA+GGG | + | chr4.3:76019056-76019075 | MS.gene070025:intron | 15.0% |
| !! | ATTGAAAAAAACAAAATGTA+AGG | - | chr4.3:76019803-76019822 | None:intergenic | 15.0% |
| !! | ATTTACATATATAAAACTGT+TGG | - | chr4.3:76021677-76021696 | None:intergenic | 15.0% |
| !! | CATACAATATTCATAATTAA+TGG | - | chr4.3:76022165-76022184 | None:intergenic | 15.0% |
| !! | TAAATGAAATTCTAGATAAT+TGG | - | chr4.3:76021498-76021517 | None:intergenic | 15.0% |
| !! | TTAATTATGAATATTGTATG+AGG | + | chr4.3:76022165-76022184 | MS.gene070025:intron | 15.0% |
| !!! | ATCATAAATTTTAAGATAAG+AGG | - | chr4.3:76019960-76019979 | None:intergenic | 15.0% |
| !!! | ATGTATATAATATTTAGTTC+TGG | + | chr4.3:76021746-76021765 | MS.gene070025:intron | 15.0% |
| !!! | ATTCTTAAACTTCTATTTTT+CGG | - | chr4.3:76019214-76019233 | None:intergenic | 15.0% |
| !!! | GATGATTTTAATAAAAGATA+TGG | + | chr4.3:76020151-76020170 | MS.gene070025:CDS | 15.0% |
| !!! | TAAGTTTTTTTTTTCTGTTT+TGG | - | chr4.3:76019288-76019307 | None:intergenic | 15.0% |
| !!! | TCATAAATTTTAAGATAAGA+GGG | - | chr4.3:76019959-76019978 | None:intergenic | 15.0% |
| !!! | TTCATCTACATATATTTTTT+TGG | + | chr4.3:76019989-76020008 | MS.gene070025:intron | 15.0% |
| !! | AAAAGTCTTAACAAAGAATT+TGG | + | chr4.3:76020202-76020221 | MS.gene070025:CDS | 20.0% |
| !! | AAAGTCTTAACAAAGAATTT+GGG | + | chr4.3:76020203-76020222 | MS.gene070025:CDS | 20.0% |
| !! | AACAAGTTCAACAAAAAAAA+CGG | - | chr4.3:76020040-76020059 | None:intergenic | 20.0% |
| !! | ATATCTAACATAATTAACGT+AGG | + | chr4.3:76019186-76019205 | MS.gene070025:intron | 20.0% |
| !! | CAAAGAAATCATCAATTATA+TGG | - | chr4.3:76020967-76020986 | None:intergenic | 20.0% |
| !! | CAATATCGATATTATTAACT+AGG | + | chr4.3:76019055-76019074 | MS.gene070025:intron | 20.0% |
| !! | GAATTTCATTTAATATCATG+TGG | + | chr4.3:76021506-76021525 | MS.gene070025:intron | 20.0% |
| !! | TAGCAGTATAAAAAAAAAAC+AGG | + | chr4.3:76020689-76020708 | MS.gene070025:intron | 20.0% |
| !! | TATGATTACTAAAGAATATC+TGG | + | chr4.3:76021165-76021184 | MS.gene070025:intron | 20.0% |
| !! | TTATTATATATGTTATGTGC+AGG | + | chr4.3:76021541-76021560 | MS.gene070025:intron | 20.0% |
| !!! | AATTTTTGTAGAATCGATAT+AGG | - | chr4.3:76021334-76021353 | None:intergenic | 20.0% |
| !!! | ATCCAAAACTTTAAAACATT+GGG | - | chr4.3:76021874-76021893 | None:intergenic | 20.0% |
| !!! | CTAGATTTTAAGATTTATGT+CGG | - | chr4.3:76020630-76020649 | None:intergenic | 20.0% |
| !!! | GATTTTAATAAAAGATATGG+TGG | + | chr4.3:76020154-76020173 | MS.gene070025:CDS | 20.0% |
| !!! | TAATCTGATTTTATGAATTG+AGG | - | chr4.3:76019732-76019751 | None:intergenic | 20.0% |
| !!! | TAGATTTTAAGATTTATGTC+GGG | - | chr4.3:76020629-76020648 | None:intergenic | 20.0% |
| !!! | TTTGCTTTAACTATTTTGTT+AGG | + | chr4.3:76021003-76021022 | MS.gene070025:intron | 20.0% |
| !!! | TTTTATGAAACTGGAATTAT+TGG | - | chr4.3:76022056-76022075 | None:intergenic | 20.0% |
| ! | AAAATAATCCAATGATGCTT+TGG | + | chr4.3:76019649-76019668 | MS.gene070025:intron | 25.0% |
| ! | AATCGAGACAAAATACTTAA+AGG | - | chr4.3:76021133-76021152 | None:intergenic | 25.0% |
| ! | ATAACATGTAGATACCAATT+CGG | - | chr4.3:76020583-76020602 | None:intergenic | 25.0% |
| ! | ATAAGCAATTTAAGCAAGTA+AGG | - | chr4.3:76019914-76019933 | None:intergenic | 25.0% |
| ! | ATAATATCGATATTGTCACT+TGG | - | chr4.3:76019050-76019069 | None:intergenic | 25.0% |
| ! | ATTGAAATAGGAGAAGATTA+TGG | + | chr4.3:76021695-76021714 | MS.gene070025:intron | 25.0% |
| ! | GATATATTCAAAGGAAAAAG+AGG | - | chr4.3:76019018-76019037 | None:intergenic | 25.0% |
| ! | TAAGTGACTATTAACTTTCA+AGG | - | chr4.3:76021073-76021092 | None:intergenic | 25.0% |
| ! | TATTGGAATGTCAATTGAAA+TGG | + | chr4.3:76022197-76022216 | MS.gene070025:intron | 25.0% |
| ! | TATTTACTTGGTATAGATGT+TGG | + | chr4.3:76019257-76019276 | MS.gene070025:intron | 25.0% |
| ! | TTACTTGCTTAAATTGCTTA+TGG | + | chr4.3:76019913-76019932 | MS.gene070025:intron | 25.0% |
| ! | TTGGAACATGATATATTCAA+AGG | - | chr4.3:76019027-76019046 | None:intergenic | 25.0% |
| ! | TTTAATAAAAGATATGGTGG+AGG | + | chr4.3:76020157-76020176 | MS.gene070025:CDS | 25.0% |
| !! | CATATATAAAACTGTTGGTT+TGG | - | chr4.3:76021672-76021691 | None:intergenic | 25.0% |
| !! | GTATCATGATTTTATGAAAC+TGG | - | chr4.3:76022065-76022084 | None:intergenic | 25.0% |
| !! | TGAACTTGTTTAATGATTAG+TGG | + | chr4.3:76020050-76020069 | MS.gene070025:intron | 25.0% |
| !!! | ATACGAGTCAATTTTTAACT+TGG | + | chr4.3:76020803-76020822 | MS.gene070025:intron | 25.0% |
| !!! | ATCCCAATGTTTTAAAGTTT+TGG | + | chr4.3:76021869-76021888 | MS.gene070025:intron | 25.0% |
| !!! | ATTGACTCGTATCATAAAAA+TGG | - | chr4.3:76020795-76020814 | None:intergenic | 25.0% |
| !!! | CAATGTTTTAAAGTTTTGGA+TGG | + | chr4.3:76021873-76021892 | MS.gene070025:intron | 25.0% |
| !!! | CATCCAAAACTTTAAAACAT+TGG | - | chr4.3:76021875-76021894 | None:intergenic | 25.0% |
| !!! | TGTATTTTGAGCAATGTATA+AGG | + | chr4.3:76019464-76019483 | MS.gene070025:intron | 25.0% |
| !!! | TTTTAATTGTGATGATGAAG+TGG | + | chr4.3:76019400-76019419 | MS.gene070025:intron | 25.0% |
| AATCACAGCAAAATAAGCTA+AGG | - | chr4.3:76021929-76021948 | None:intergenic | 30.0% | |
| ACTTGGTTTATCAATTGACT+TGG | + | chr4.3:76020820-76020839 | MS.gene070025:intron | 30.0% | |
| ATACGTTCAAGAAAAGCTAT+TGG | - | chr4.3:76020127-76020146 | None:intergenic | 30.0% | |
| ATTAACTAGGGTTTGAACTT+AGG | + | chr4.3:76019068-76019087 | MS.gene070025:intron | 30.0% | |
| CATGATACTCTAGCATTAAT+GGG | + | chr4.3:76022077-76022096 | MS.gene070025:intron | 30.0% | |
| CTTTATGCCATTAAGTTTCA+AGG | - | chr4.3:76021043-76021062 | None:intergenic | 30.0% | |
| GAATGTCAATTGAAATGGTA+TGG | + | chr4.3:76022202-76022221 | MS.gene070025:intron | 30.0% | |
| GTATGAGGATTGTGAATTAT+TGG | + | chr4.3:76022180-76022199 | MS.gene070025:intron | 30.0% | |
| GTATTTATAGAACCAGATCA+CGG | - | chr4.3:76020853-76020872 | None:intergenic | 30.0% | |
| TATTAGTGAGCTTCAACATA+TGG | - | chr4.3:76019837-76019856 | None:intergenic | 30.0% | |
| TATTTATAGAACCAGATCAC+GGG | - | chr4.3:76020852-76020871 | None:intergenic | 30.0% | |
| TCATGATACTCTAGCATTAA+TGG | + | chr4.3:76022076-76022095 | MS.gene070025:intron | 30.0% | |
| TTATGGACAGAGTTTGTATT+TGG | + | chr4.3:76021712-76021731 | MS.gene070025:intron | 30.0% | |
| TTATGTGCAGGTTATTGATA+GGG | + | chr4.3:76021553-76021572 | MS.gene070025:intron | 30.0% | |
| TTTAGATTGAAGAACCGAAT+TGG | + | chr4.3:76020566-76020585 | MS.gene070025:intron | 30.0% | |
| ! | AAAAATCTCCAAAGCATCAT+TGG | - | chr4.3:76019660-76019679 | None:intergenic | 30.0% |
| ! | AGCTTTTCTTGAACGTATTA+AGG | + | chr4.3:76020129-76020148 | MS.gene070025:CDS | 30.0% |
| ! | ATCATTGATCTATAGCTTTG+TGG | + | chr4.3:76018786-76018805 | MS.gene070025:CDS | 30.0% |
| ! | CAACATCTGAGATATTTACT+TGG | + | chr4.3:76019245-76019264 | MS.gene070025:intron | 30.0% |
| ! | GGTTCTTCAATCTAAAATGT+AGG | - | chr4.3:76020562-76020581 | None:intergenic | 30.0% |
| ! | TATGATGGAAAATATCGACA+AGG | + | chr4.3:76020409-76020428 | MS.gene070025:CDS | 30.0% |
| ! | TCTTTTGCCTTGAAACTTAA+TGG | + | chr4.3:76021033-76021052 | MS.gene070025:intron | 30.0% |
| !!! | AAATGTAGGTGCTATTTTGT+TGG | - | chr4.3:76020548-76020567 | None:intergenic | 30.0% |
| !!! | TAAAGTTTTGGATGGAGTTA+TGG | + | chr4.3:76021881-76021900 | MS.gene070025:intron | 30.0% |
| AGGTTTACTTACAACTGTGA+TGG | + | chr4.3:76018907-76018926 | MS.gene070025:CDS | 35.0% | |
| CATCCAATAATAGAAGTGGA+CGG | - | chr4.3:76019427-76019446 | None:intergenic | 35.0% | |
| CTAAAGAATATCTGGCATCT+AGG | + | chr4.3:76021173-76021192 | MS.gene070025:intron | 35.0% | |
| GAAAATCCAACCAAAATCGT+AGG | + | chr4.3:76020752-76020771 | MS.gene070025:intron | 35.0% | |
| GAAACTGGAATTATTGGACT+TGG | - | chr4.3:76022050-76022069 | None:intergenic | 35.0% | |
| GTTATGTGCAGGTTATTGAT+AGG | + | chr4.3:76021552-76021571 | MS.gene070025:intron | 35.0% | |
| TAGGTGGAACAATAACTAGT+TGG | + | chr4.3:76019509-76019528 | MS.gene070025:intron | 35.0% | |
| TATGTGCAGGTTATTGATAG+GGG | + | chr4.3:76021554-76021573 | MS.gene070025:intron | 35.0% | |
| TGAAGTCAAAGGAGTTATGA+TGG | + | chr4.3:76020394-76020413 | MS.gene070025:CDS | 35.0% | |
| TGAGCAATGTATAAGGTCAA+TGG | + | chr4.3:76019471-76019490 | MS.gene070025:intron | 35.0% | |
| ! | ATACTCTAGCATTAATGGGT+TGG | + | chr4.3:76022081-76022100 | MS.gene070025:intron | 35.0% |
| ! | ATCTAGGCTTGAGTATTTTG+TGG | + | chr4.3:76021189-76021208 | MS.gene070025:intron | 35.0% |
| ! | ATGCTTTAGACCAAAGTTGA+AGG | + | chr4.3:76020301-76020320 | MS.gene070025:intron | 35.0% |
| ! | CCAAAATCGTAGGATTTTGA+AGG | + | chr4.3:76020762-76020781 | MS.gene070025:intron | 35.0% |
| ! | CCTTCAAAATCCTACGATTT+TGG | - | chr4.3:76020765-76020784 | None:intergenic | 35.0% |
| ! | GACAGTAGGTTTTCAAAATC+GGG | - | chr4.3:76021435-76021454 | None:intergenic | 35.0% |
| ! | GGACAGTAGGTTTTCAAAAT+CGG | - | chr4.3:76021436-76021455 | None:intergenic | 35.0% |
| ! | TATCGATATTGTCACTTGGT+TGG | - | chr4.3:76019046-76019065 | None:intergenic | 35.0% |
| !! | AGTTGTTCGTGAGTTTTATG+TGG | + | chr4.3:76019098-76019117 | MS.gene070025:intron | 35.0% |
| !! | CAAAATCCTACGATTTTGGT+TGG | - | chr4.3:76020761-76020780 | None:intergenic | 35.0% |
| !! | GATTTTGAAAACCTACTGTC+CGG | + | chr4.3:76021435-76021454 | MS.gene070025:intron | 35.0% |
| AACTTCCTGCTTCTAACAAC+AGG | + | chr4.3:76018887-76018906 | MS.gene070025:CDS | 40.0% | |
| ACCACATCTTTCTCCTCAAT+TGG | - | chr4.3:76022265-76022284 | None:intergenic | 40.0% | |
| ACTCACACTTGAACCTAACA+AGG | - | chr4.3:76021791-76021810 | None:intergenic | 40.0% | |
| ATATTGTGTGGAACATCCAG+AGG | + | chr4.3:76020334-76020353 | MS.gene070025:CDS | 40.0% | |
| ATGGTCCAAACTTGGCTAAT+AGG | + | chr4.3:76019490-76019509 | MS.gene070025:intron | 40.0% | |
| ATTGTTCTTTCTGTGTGCCA+TGG | + | chr4.3:76022344-76022363 | MS.gene070025:CDS | 40.0% | |
| CCACATCTTTCTCCTCAATT+GGG | - | chr4.3:76022264-76022283 | None:intergenic | 40.0% | |
| CCACCATCCAATAATAGAAG+TGG | - | chr4.3:76019431-76019450 | None:intergenic | 40.0% | |
| CCACTTCTATTATTGGATGG+TGG | + | chr4.3:76019428-76019447 | MS.gene070025:intron | 40.0% | |
| CGTCCACTTCTATTATTGGA+TGG | + | chr4.3:76019425-76019444 | MS.gene070025:intron | 40.0% | |
| GTAAACCTGTTGTTAGAAGC+AGG | - | chr4.3:76018895-76018914 | None:intergenic | 40.0% | |
| GTTATGGTGTCCAAATCTCT+TGG | + | chr4.3:76021897-76021916 | MS.gene070025:intron | 40.0% | |
| TAAGGTCAATGGTCCAAACT+TGG | + | chr4.3:76019482-76019501 | MS.gene070025:intron | 40.0% | |
| TACTGAATCCATTATCGACG+AGG | - | chr4.3:76018948-76018967 | None:intergenic | 40.0% | |
| TCTGCACAAGAGATTGATGA+AGG | + | chr4.3:76020913-76020932 | MS.gene070025:intron | 40.0% | |
| TGAAGGCGAACATGTTGATA+TGG | + | chr4.3:76020930-76020949 | MS.gene070025:intron | 40.0% | |
| TTCCACCTATTAGCCAAGTT+TGG | - | chr4.3:76019498-76019517 | None:intergenic | 40.0% | |
| TTGAAGACACTGGAAAGCTA+TGG | - | chr4.3:76018866-76018885 | None:intergenic | 40.0% | |
| ! | AAGGCATCAACCAAGAGATT+TGG | - | chr4.3:76021910-76021929 | None:intergenic | 40.0% |
| ! | CAAAATCGGGATTTAGCTTC+AGG | - | chr4.3:76021422-76021441 | None:intergenic | 40.0% |
| ! | GCAAAGCACCTAAACATACA+CGG | - | chr4.3:76021464-76021483 | None:intergenic | 40.0% |
| !! | AGAGAAGATTGAGGTTTTGG+TGG | + | chr4.3:76021577-76021596 | MS.gene070025:CDS | 40.0% |
| !! | CAGGAAGTTTTTGAAGACAC+TGG | - | chr4.3:76018876-76018895 | None:intergenic | 40.0% |
| !! | GCTCAAGTTTCTGAAGTCAA+AGG | + | chr4.3:76020383-76020402 | MS.gene070025:CDS | 40.0% |
| AAATGGTATGGCTGTTGTGC+AGG | + | chr4.3:76022214-76022233 | MS.gene070025:intron | 45.0% | |
| AAGACACTGGAAAGCTATGG+TGG | - | chr4.3:76018863-76018882 | None:intergenic | 45.0% | |
| ACCTAAACATACACGGACAC+CGG | - | chr4.3:76021457-76021476 | None:intergenic | 45.0% | |
| ACTCGAATGACGTCCTTGTT+AGG | + | chr4.3:76021775-76021794 | MS.gene070025:intron | 45.0% | |
| AGCTTACTGTGTTGTAGCAG+TGG | + | chr4.3:76020081-76020100 | MS.gene070025:intron | 45.0% | |
| AGGCGAACATGTTGATATGG+TGG | + | chr4.3:76020933-76020952 | MS.gene070025:intron | 45.0% | |
| ATTATCGACGAGGAAGCTGA+AGG | - | chr4.3:76018938-76018957 | None:intergenic | 45.0% | |
| CCCAATTGAGGAGAAAGATG+TGG | + | chr4.3:76022261-76022280 | MS.gene070025:CDS | 45.0% | |
| GGACCGTCCACTTCTATTAT+TGG | + | chr4.3:76019421-76019440 | MS.gene070025:intron | 45.0% | |
| GGAGCAGATGCAATATTGTG+TGG | + | chr4.3:76020322-76020341 | MS.gene070025:CDS | 45.0% | |
| GTCCAAACTTGGCTAATAGG+TGG | + | chr4.3:76019493-76019512 | MS.gene070025:intron | 45.0% | |
| TGATAGGGGAGAGAAGATTG+AGG | + | chr4.3:76021568-76021587 | MS.gene070025:CDS | 45.0% | |
| TGCATCTGCTCCTTCAACTT+TGG | - | chr4.3:76020314-76020333 | None:intergenic | 45.0% | |
| TTCAGCTTCCTCGTCGATAA+TGG | + | chr4.3:76018937-76018956 | MS.gene070025:CDS | 45.0% | |
| TTGTGCAGGCACAAGATTTC+AGG | + | chr4.3:76022228-76022247 | MS.gene070025:intron | 45.0% | |
| ! | ATCGGGATTTAGCTTCAGGT+CGG | - | chr4.3:76021418-76021437 | None:intergenic | 45.0% |
| ! | GGGAGAGAAGATTGAGGTTT+TGG | + | chr4.3:76021574-76021593 | MS.gene070025:CDS | 45.0% |
| !! | ATCTATAGCTTTGTGGCTCG+TGG | + | chr4.3:76018793-76018812 | MS.gene070025:CDS | 45.0% |
| !! | GCAAGTTTGCTAACTTCCTC+TGG | - | chr4.3:76020353-76020372 | None:intergenic | 45.0% |
| !! | TATATTTAATTAATGTTTAA+TGG | + | chr4.3:76019540-76019559 | MS.gene070025:intron | 5.0% |
| !!! | TAAAAATAAAATATGATTTT+AGG | + | chr4.3:76019616-76019635 | MS.gene070025:intron | 5.0% |
| AACTGAGAACCTTCGCTCTC+AGG | + | chr4.3:76021604-76021623 | MS.gene070025:CDS | 50.0% | |
| GCACAAGATTTCAGGCAGCA+GGG | + | chr4.3:76022236-76022255 | MS.gene070025:CDS | 50.0% | |
| GTTGTAGCAGTGGAGTCTGT+TGG | + | chr4.3:76020091-76020110 | MS.gene070025:CDS | 50.0% | |
| TCCGGTGTCCGTGTATGTTT+AGG | + | chr4.3:76021453-76021472 | MS.gene070025:intron | 50.0% | |
| TCGTGGTACGGTCATTCTTG+CGG | + | chr4.3:76018810-76018829 | MS.gene070025:CDS | 50.0% | |
| TCTCTTGTGCAGAGACAGTG+TGG | - | chr4.3:76020906-76020925 | None:intergenic | 50.0% | |
| ! | GGATTTAGCTTCAGGTCGGA+AGG | - | chr4.3:76021414-76021433 | None:intergenic | 50.0% |
| !! | CTTGGTTTGTACCCGTGATC+TGG | + | chr4.3:76020838-76020857 | MS.gene070025:intron | 50.0% |
| !! | TAGCTTTGTGGCTCGTGGTA+CGG | + | chr4.3:76018798-76018817 | MS.gene070025:CDS | 50.0% |
| AAGGTCGAACCTGAGAGCGA+AGG | - | chr4.3:76021616-76021635 | None:intergenic | 55.0% | |
| ATACACGGACACCGGACAGT+AGG | - | chr4.3:76021449-76021468 | None:intergenic | 55.0% | |
| GCGGAGTACAGTGACTTCAC+AGG | + | chr4.3:76018829-76018848 | MS.gene070025:CDS | 55.0% | |
| GGCACAAGATTTCAGGCAGC+AGG | + | chr4.3:76022235-76022254 | MS.gene070025:intron | 55.0% | |
| GGCAGCAGGGAACCCAATTG+AGG | + | chr4.3:76022249-76022268 | MS.gene070025:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 76018775 | 76022379 | 76018775 | ID=MS.gene070025 |
| chr4.3 | mRNA | 76018775 | 76022379 | 76018775 | ID=MS.gene070025.t1;Parent=MS.gene070025 |
| chr4.3 | exon | 76018775 | 76018964 | 76018775 | ID=MS.gene070025.t1.exon1;Parent=MS.gene070025.t1 |
| chr4.3 | CDS | 76018775 | 76018964 | 76018775 | ID=cds.MS.gene070025.t1;Parent=MS.gene070025.t1 |
| chr4.3 | exon | 76020083 | 76020224 | 76020083 | ID=MS.gene070025.t1.exon2;Parent=MS.gene070025.t1 |
| chr4.3 | CDS | 76020083 | 76020224 | 76020083 | ID=cds.MS.gene070025.t1;Parent=MS.gene070025.t1 |
| chr4.3 | exon | 76020310 | 76020430 | 76020310 | ID=MS.gene070025.t1.exon3;Parent=MS.gene070025.t1 |
| chr4.3 | CDS | 76020310 | 76020430 | 76020310 | ID=cds.MS.gene070025.t1;Parent=MS.gene070025.t1 |
| chr4.3 | exon | 76021563 | 76021625 | 76021563 | ID=MS.gene070025.t1.exon4;Parent=MS.gene070025.t1 |
| chr4.3 | CDS | 76021563 | 76021625 | 76021563 | ID=cds.MS.gene070025.t1;Parent=MS.gene070025.t1 |
| chr4.3 | exon | 76022236 | 76022379 | 76022236 | ID=MS.gene070025.t1.exon5;Parent=MS.gene070025.t1 |
| chr4.3 | CDS | 76022236 | 76022379 | 76022236 | ID=cds.MS.gene070025.t1;Parent=MS.gene070025.t1 |
| Gene Sequence |
| Protein sequence |
