AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79116

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79116.t1 MTR_3g086020 95.263 380 18 0 1 380 37 416 0.0 748
MS.gene79116.t1 MTR_8g079980 34.837 399 225 8 3 375 37 426 2.56e-70 227
MS.gene79116.t1 MTR_8g079970 33.501 397 234 11 3 375 37 427 1.81e-69 225
MS.gene79116.t1 MTR_8g079950 32.161 398 240 11 2 375 36 427 1.92e-69 225
MS.gene79116.t1 MTR_5g084870 33.586 396 229 12 3 375 37 421 4.86e-68 221
MS.gene79116.t1 MTR_5g084850 34.091 396 226 9 3 375 37 420 2.42e-67 219
MS.gene79116.t1 MTR_5g084900 33.514 370 197 12 23 375 7 344 1.26e-56 189
MS.gene79116.t1 MTR_2g007880 32.199 382 219 11 25 375 74 446 1.80e-54 186
MS.gene79116.t1 MTR_1g094790 32.688 413 228 17 2 375 36 437 1.33e-48 171
MS.gene79116.t1 MTR_8g467580 29.238 407 245 14 2 375 36 432 5.26e-41 150
MS.gene79116.t1 MTR_8g467590 28.856 402 253 13 2 375 36 432 2.29e-37 140
MS.gene79116.t1 MTR_4g007540 25.806 403 253 13 3 369 35 427 2.10e-36 137
MS.gene79116.t1 MTR_8g075610 25.980 408 244 15 2 369 25 414 7.98e-33 127
MS.gene79116.t1 MTR_2g064495 24.129 402 260 13 3 369 35 426 5.71e-32 125
MS.gene79116.t1 MTR_2g105330 24.129 402 260 13 3 369 35 426 1.54e-31 124
MS.gene79116.t1 MTR_7g027175 28.169 355 208 14 25 346 68 408 8.54e-30 119
MS.gene79116.t1 MTR_8g096530 26.683 401 230 14 21 380 55 432 3.57e-28 115
MS.gene79116.t1 MTR_3g026950 28.463 397 223 14 10 353 39 427 2.19e-27 112
MS.gene79116.t1 MTR_7g085930 27.009 448 244 22 2 380 36 469 3.65e-26 109
MS.gene79116.t1 MTR_4g097090 28.238 386 211 17 1 333 39 411 8.80e-26 108
MS.gene79116.t1 MTR_3g070170 26.253 419 245 16 15 376 56 467 6.16e-25 106
MS.gene79116.t1 MTR_3g098980 24.934 381 239 14 22 369 63 429 1.80e-24 104
MS.gene79116.t1 MTR_3g102010 27.553 421 241 22 7 379 47 451 5.21e-23 100
MS.gene79116.t1 MTR_7g085990 25.400 437 239 19 2 369 32 450 1.29e-22 99.4
MS.gene79116.t1 MTR_4g094835 27.665 394 231 17 23 375 62 442 3.43e-22 97.8
MS.gene79116.t1 MTR_3g049150 28.647 377 220 15 1 333 32 403 3.43e-22 98.2
MS.gene79116.t1 MTR_7g086000 25.691 362 205 17 22 329 57 408 5.39e-22 97.4
MS.gene79116.t1 MTR_1g053315 24.737 380 229 14 2 338 53 418 9.15e-22 96.7
MS.gene79116.t1 MTR_4g127650 28.291 357 206 15 21 333 62 412 1.52e-21 96.3
MS.gene79116.t1 MTR_4g013050 25.570 395 220 18 11 364 35 396 2.15e-20 92.4
MS.gene79116.t1 MTR_3g101900 28.362 409 213 23 25 379 66 448 2.43e-20 92.4
MS.gene79116.t1 MTR_5g090830 26.718 393 206 22 4 334 51 423 7.95e-20 91.3
MS.gene79116.t1 MTR_4g055170 25.063 399 245 16 25 378 69 458 2.10e-19 89.7
MS.gene79116.t1 MTR_4g094842 26.133 375 214 15 7 334 44 402 3.07e-19 89.4
MS.gene79116.t1 MTR_0190s0020 25.553 407 268 12 3 379 41 442 3.94e-19 89.0
MS.gene79116.t1 MTR_4g022720 26.942 412 244 21 4 375 37 431 3.43e-18 85.9
MS.gene79116.t1 MTR_5g090810 25.700 393 210 21 4 334 51 423 1.00e-17 84.7
MS.gene79116.t1 MTR_7g084940 26.184 359 220 13 3 329 47 392 4.68e-17 82.8
MS.gene79116.t1 MTR_7g114490 22.525 404 262 15 5 370 45 435 5.50e-17 82.8
MS.gene79116.t1 MTR_7g026860 26.506 415 237 21 8 375 41 434 1.64e-16 80.9
MS.gene79116.t1 MTR_8g041770 26.000 400 263 13 8 379 47 441 2.02e-16 80.9
MS.gene79116.t1 MTR_5g026320 22.652 362 221 14 9 330 58 400 2.36e-16 80.5
MS.gene79116.t1 MTR_3g101970 28.424 387 225 21 25 378 69 436 2.95e-16 80.1
MS.gene79116.t1 MTR_7g114960 24.485 388 250 14 25 375 63 444 4.29e-16 79.7
MS.gene79116.t1 MTR_1g040215 26.027 365 219 17 6 336 45 392 1.61e-15 78.2
MS.gene79116.t1 MTR_7g056087 25.424 413 232 20 9 368 42 431 2.23e-15 77.8
MS.gene79116.t1 MTR_7g014610 24.627 402 217 19 25 355 68 454 2.64e-15 77.4
MS.gene79116.t1 MTR_4g094832 24.581 358 235 12 49 380 83 431 2.64e-15 77.4
MS.gene79116.t1 MTR_4g022290 26.531 343 211 11 25 332 60 396 3.75e-15 77.0
MS.gene79116.t1 MTR_5g090880 24.462 372 220 19 15 334 55 417 3.92e-15 77.0
MS.gene79116.t1 MTR_3g450710 25.000 376 213 17 4 328 52 409 4.54e-15 76.6
MS.gene79116.t1 MTR_7g014200 23.821 403 231 18 20 360 64 452 7.52e-15 76.3
MS.gene79116.t1 MTR_1g040315 23.691 401 223 16 5 373 44 393 1.02e-14 75.5
MS.gene79116.t1 MTR_1g040175 23.836 365 224 16 5 333 44 390 1.18e-14 75.5
MS.gene79116.t1 MTR_7g114560 22.525 404 268 16 5 373 45 438 1.95e-14 74.7
MS.gene79116.t1 MTR_1g081660 22.549 408 275 15 5 379 53 452 3.02e-14 74.3
MS.gene79116.t1 MTR_3g088420 25.967 362 223 14 25 351 55 406 4.71e-14 73.6
MS.gene79116.t1 MTR_5g076700 21.951 410 264 16 5 373 45 439 1.28e-13 72.4
MS.gene79116.t1 MTR_3g112180 22.691 379 244 13 25 367 61 426 1.76e-13 72.0
MS.gene79116.t1 MTR_1g040195 25.152 330 198 16 39 336 55 367 2.99e-13 71.2
MS.gene79116.t1 MTR_3g450690 24.650 357 203 18 24 328 71 413 5.65e-13 70.5
MS.gene79116.t1 MTR_7g084910 23.662 355 212 13 7 329 52 379 8.35e-13 69.7
MS.gene79116.t1 MTR_7g014620 25.134 374 231 18 25 360 54 416 8.73e-13 69.7
MS.gene79116.t1 MTR_6g053810 24.444 405 237 19 26 375 72 462 1.36e-12 69.3
MS.gene79116.t1 MTR_3g465980 23.415 410 263 16 11 375 54 457 1.73e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79116.t1 AT1G24430 44.216 389 204 8 2 379 39 425 4.89e-113 337
MS.gene79116.t1 AT3G26040 36.224 392 230 10 2 375 36 425 5.95e-78 247
MS.gene79116.t1 AT3G30280 32.915 398 241 10 2 376 39 433 2.10e-64 212
MS.gene79116.t1 AT4G15390 33.580 405 230 13 2 376 41 436 1.29e-61 204
MS.gene79116.t1 AT4G15390 33.580 405 230 13 2 376 41 436 1.29e-61 204
MS.gene79116.t1 AT5G47950 35.309 388 228 12 2 376 39 416 1.67e-61 204
MS.gene79116.t1 AT1G24420 36.667 360 198 13 36 375 76 425 3.70e-58 195
MS.gene79116.t1 AT1G24420 36.667 360 198 13 36 375 76 425 3.70e-58 195
MS.gene79116.t1 AT5G23970 30.769 390 248 13 2 375 34 417 9.95e-45 160
MS.gene79116.t1 AT5G47980 29.925 401 246 16 5 376 39 433 2.26e-41 151
MS.gene79116.t1 AT4G15400 30.521 403 239 17 2 376 36 425 3.41e-34 131
MS.gene79116.t1 AT5G41040 27.701 361 210 14 23 347 67 412 2.66e-32 126
MS.gene79116.t1 AT5G41040 27.778 360 209 14 23 346 83 427 3.54e-32 126
MS.gene79116.t1 AT5G48930 26.601 406 246 17 3 369 35 427 1.74e-29 118
MS.gene79116.t1 AT3G50280 25.191 393 252 15 19 375 53 439 4.80e-25 106
MS.gene79116.t1 AT3G48720 24.500 400 256 13 8 374 44 430 2.66e-24 103
MS.gene79116.t1 AT5G63560 25.000 396 253 15 9 374 45 426 2.69e-24 103
MS.gene79116.t1 AT1G28680 25.140 358 222 14 8 332 45 389 2.74e-23 101
MS.gene79116.t1 AT2G19070 25.180 417 258 14 1 369 34 444 1.76e-22 99.0
MS.gene79116.t1 AT1G27620 24.804 383 234 15 24 369 57 422 2.30e-22 98.6
MS.gene79116.t1 AT5G67150 26.570 414 227 19 19 378 55 445 4.41e-22 97.8
MS.gene79116.t1 AT1G28680 27.444 266 160 11 8 244 45 306 1.32e-21 95.9
MS.gene79116.t1 AT5G17540 24.146 410 254 17 5 373 44 437 5.30e-21 94.7
MS.gene79116.t1 AT3G50270 26.392 413 253 16 8 379 46 448 5.58e-21 94.4
MS.gene79116.t1 AT1G03390 23.797 374 226 15 2 333 54 410 2.62e-19 89.7
MS.gene79116.t1 AT3G50280 26.897 290 186 11 107 375 25 309 4.70e-19 87.4
MS.gene79116.t1 AT5G39090 26.456 412 231 19 7 365 44 436 5.71e-19 88.6
MS.gene79116.t1 AT5G16410 25.215 349 208 14 21 331 87 420 1.19e-18 87.8
MS.gene79116.t1 AT5G57840 22.739 387 250 15 22 368 53 430 3.75e-18 85.9
MS.gene79116.t1 AT2G39980 23.641 423 243 18 25 375 62 476 7.52e-18 85.5
MS.gene79116.t1 AT3G29670 24.356 427 236 22 1 365 37 438 1.37e-17 84.3
MS.gene79116.t1 AT1G65450 23.227 409 264 15 7 377 54 450 2.67e-17 83.6
MS.gene79116.t1 AT5G07080 24.173 393 236 21 22 369 67 442 2.98e-17 83.6
MS.gene79116.t1 AT4G31910 25.065 383 217 16 7 336 46 411 3.47e-17 83.2
MS.gene79116.t1 AT5G38130 23.822 382 227 18 25 360 79 442 1.06e-16 81.6
MS.gene79116.t1 AT1G32910 25.414 362 212 15 20 334 60 410 1.34e-16 81.6
MS.gene79116.t1 AT1G78990 25.389 386 210 18 19 350 61 422 3.53e-16 80.1
MS.gene79116.t1 AT2G23510 22.406 424 262 18 1 375 45 450 1.87e-15 77.8
MS.gene79116.t1 AT2G40230 24.930 357 207 15 20 334 54 391 6.63e-15 76.3
MS.gene79116.t1 AT5G07870 25.310 403 250 19 20 379 67 461 1.59e-14 75.1
MS.gene79116.t1 AT5G39050 23.563 348 196 13 73 365 124 456 4.54e-13 70.9

Find 70 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGGTTGGGGCAAACCTATT+TGG 0.239996 3.1:+68835267 MS.gene79116:CDS
TCTTTGGTGATACCACTTCT+AGG 0.244639 3.1:-68834777 None:intergenic
TTTGCAAACTATATTATCTT+TGG 0.262916 3.1:-68834793 None:intergenic
TAGCTTGAAGCTTGAGGATA+TGG 0.275716 3.1:+68835370 MS.gene79116:CDS
CGGTTGGGGCAAACCTATTT+GGG 0.293598 3.1:+68835268 MS.gene79116:CDS
AATGAGTTAAGATGTTTGAT+AGG 0.297849 3.1:-68834380 None:intergenic
ATCAGACGGTTGAGTTCATT+TGG 0.298573 3.1:-68834525 None:intergenic
GTGATTCTTGTTTCTATGTA+AGG 0.301257 3.1:-68834465 None:intergenic
TACACGCGTTGAGGCTTTAT+CGG 0.308570 3.1:+68834878 MS.gene79116:CDS
ATATCACAAACATCACTTTC+GGG 0.321077 3.1:+68834565 MS.gene79116:CDS
AGAGCATTTGGAATTTCTTA+AGG 0.327158 3.1:+68835157 MS.gene79116:CDS
GCAGGTGAACCAACCCAAAT+AGG 0.347731 3.1:-68835281 None:intergenic
TCAAGAAGGTAAAGAGCATT+TGG 0.349750 3.1:+68835145 MS.gene79116:CDS
CCTTTGTATGATGCTGATTT+CGG 0.369977 3.1:+68835248 MS.gene79116:CDS
GATATCACAAACATCACTTT+CGG 0.382017 3.1:+68834564 MS.gene79116:CDS
GTGTTTGTTGATTGTAGGGA+TGG 0.395747 3.1:+68835326 MS.gene79116:CDS
TTTCAATTTCCTCAATAGTT+GGG 0.405242 3.1:+68834668 MS.gene79116:CDS
CAAAGGAAACCTACACAAAC+TGG 0.408223 3.1:-68835231 None:intergenic
GTGATATCGTCAAGTTGAAA+TGG 0.414665 3.1:-68834549 None:intergenic
TGTTTGTTGATTGTAGGGAT+GGG 0.414709 3.1:+68835327 MS.gene79116:CDS
GTATGATGCTGATTTCGGTT+GGG 0.417116 3.1:+68835253 MS.gene79116:CDS
TCTTCTCCGCCATTCATCTT+CGG 0.417856 3.1:-68835053 None:intergenic
TGGTTGTGTTTGTTGATTGT+AGG 0.429668 3.1:+68835321 MS.gene79116:CDS
TGATAGAGTGGTTGTGAAGG+AGG 0.431846 3.1:+68835187 MS.gene79116:CDS
AGTGGTTGTGAAGGAGGAAT+TGG 0.435135 3.1:+68835193 MS.gene79116:CDS
TGATTCTTGTTTCTATGTAA+GGG 0.435205 3.1:-68834464 None:intergenic
TTTGTTGATTGTAGGGATGG+GGG 0.443794 3.1:+68835329 MS.gene79116:CDS
TGAGAGTAGAAGAGGACGAT+AGG 0.446451 3.1:-68834309 None:intergenic
GGTTGTGTTTGTTGATTGTA+GGG 0.448709 3.1:+68835322 MS.gene79116:CDS
GGTTAAGTTTGAAGCTGACT+TGG 0.451046 3.1:+68835391 MS.gene79116:CDS
GTTTGTTGATTGTAGGGATG+GGG 0.456514 3.1:+68835328 MS.gene79116:CDS
GAGAGTAGAAGAGGACGATA+GGG 0.457167 3.1:-68834308 None:intergenic
GATGGTGTACAAAGAAACTA+TGG 0.458576 3.1:+68834939 MS.gene79116:CDS
TATGATGCTGATTTCGGTTG+GGG 0.459618 3.1:+68835254 MS.gene79116:CDS
TCAGACGGTTGAGTTCATTT+GGG 0.460103 3.1:-68834524 None:intergenic
TGTATGATGCTGATTTCGGT+TGG 0.463212 3.1:+68835252 MS.gene79116:CDS
CGGTTGAGTTCATTTGGGAT+TGG 0.465481 3.1:-68834519 None:intergenic
TAATATTTGCCCAACTATTG+AGG 0.469088 3.1:-68834677 None:intergenic
ATGGCGGAGAAGAGTGTTAC+GGG 0.469371 3.1:+68835063 MS.gene79116:CDS
CCGTTACCTTCAGAATCGTT+TGG 0.473811 3.1:+68835002 MS.gene79116:CDS
GTTGATGTGATTTATAATGA+TGG 0.500712 3.1:+68834921 MS.gene79116:CDS
ATGAGTTAAGATGTTTGATA+GGG 0.504237 3.1:-68834379 None:intergenic
CTTTGGTGATACCACTTCTA+GGG 0.506327 3.1:-68834776 None:intergenic
AGTTGTGGTGGAATTGCAAT+CGG 0.519199 3.1:+68834606 MS.gene79116:CDS
CTTAACTCATTTCTACCCTC+TGG 0.520047 3.1:+68834392 MS.gene79116:CDS
TGATAAAGAATATGTGAAGA+AGG 0.523806 3.1:+68835121 MS.gene79116:CDS
AATGGCGGAGAAGAGTGTTA+CGG 0.532814 3.1:+68835062 MS.gene79116:CDS
TGGGGCAAACCTATTTGGGT+TGG 0.539180 3.1:+68835272 MS.gene79116:CDS
ATAACGATTCCGAAGATGAA+TGG 0.550500 3.1:+68835044 MS.gene79116:CDS
CTATGTTAGCTTGAAGCTTG+AGG 0.553692 3.1:+68835364 MS.gene79116:CDS
GATAAAGCCTCAACGCGTGT+AGG 0.559157 3.1:-68834876 None:intergenic
ACTCATTTCTACCCTCTGGC+AGG 0.560780 3.1:+68834396 MS.gene79116:CDS
TGTCGTTGTGAGAGTAGAAG+AGG 0.565498 3.1:-68834317 None:intergenic
CTTTCGCATCAAATAGCCGA+TGG 0.567567 3.1:+68834636 MS.gene79116:CDS
TTGTTCAATCGTCCTGCCAG+AGG 0.580942 3.1:-68834408 None:intergenic
TCGGGATTTGACCCTAGAAG+TGG 0.584089 3.1:+68834765 MS.gene79116:CDS
CTCAAGCTTCAAGCTAACAT+AGG 0.596679 3.1:-68835363 None:intergenic
TGTTCAATCGTCCTGCCAGA+GGG 0.601599 3.1:-68834407 None:intergenic
TATGTGAAGAAGGTTCAAGA+AGG 0.607198 3.1:+68835131 MS.gene79116:CDS
AAATTCTTAAAAGTCAAAGC+AGG 0.611194 3.1:-68835299 None:intergenic
ACGATAGGGTTGTAAACCAT+AGG 0.626993 3.1:-68834294 None:intergenic
TTCATACACTGCAATGACGA+AGG 0.630637 3.1:+68834438 MS.gene79116:CDS
CCGAAATCAGCATCATACAA+AGG 0.631934 3.1:-68835248 None:intergenic
TAGTTACCAAACGATTCTGA+AGG 0.638125 3.1:-68835008 None:intergenic
CAAGTTGAAATGGAATCAGA+CGG 0.638265 3.1:-68834539 None:intergenic
CCAAACGATTCTGAAGGTAA+CGG 0.670157 3.1:-68835002 None:intergenic
AAACTATGGTGTGGTTCATG+CGG 0.688152 3.1:+68834953 MS.gene79116:CDS
ACGATTCCGAAGATGAATGG+CGG 0.711525 3.1:+68835047 MS.gene79116:CDS
AACGATTCTGAAGGTAACGG+TGG 0.714521 3.1:-68834999 None:intergenic
TGTACAAAGAAACTATGGTG+TGG 0.772212 3.1:+68834944 MS.gene79116:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGAAAAATGATAAACCAT+CGG - chr3.1:68834655-68834674 None:intergenic 20.0%
!! TTTGCAAACTATATTATCTT+TGG - chr3.1:68834796-68834815 None:intergenic 20.0%
! AAATTCTTAAAAGTCAAAGC+AGG - chr3.1:68835302-68835321 None:intergenic 25.0%
! AATGAGTTAAGATGTTTGAT+AGG - chr3.1:68834383-68834402 None:intergenic 25.0%
! AGCTTAGAAGAATCAAAAAT+AGG - chr3.1:68834726-68834745 None:intergenic 25.0%
! ATGAGTTAAGATGTTTGATA+GGG - chr3.1:68834382-68834401 None:intergenic 25.0%
! GTTGATGTGATTTATAATGA+TGG + chr3.1:68834921-68834940 MS.gene79116:CDS 25.0%
! TGATAAAGAATATGTGAAGA+AGG + chr3.1:68835121-68835140 MS.gene79116:CDS 25.0%
! TTTCAATTTCCTCAATAGTT+GGG + chr3.1:68834668-68834687 MS.gene79116:CDS 25.0%
!! GAAGAATCAAAAATAGGTTT+TGG - chr3.1:68834720-68834739 None:intergenic 25.0%
!! TCAAATCCCGAAATATTTTT+GGG - chr3.1:68834756-68834775 None:intergenic 25.0%
!! TTAATTTTACCAGTTTGTGT+AGG + chr3.1:68835222-68835241 MS.gene79116:CDS 25.0%
!! TTTTCAATTTCCTCAATAGT+TGG + chr3.1:68834667-68834686 MS.gene79116:CDS 25.0%
!!! ATTTTTTAGAGTGTTGGATA+TGG - chr3.1:68834358-68834377 None:intergenic 25.0%
!!! CAACTCAATTTTTTTAGTTG+TGG + chr3.1:68834591-68834610 MS.gene79116:CDS 25.0%
!!! TGATTCTTGTTTCTATGTAA+GGG - chr3.1:68834467-68834486 None:intergenic 25.0%
!!! TGCTTTGACTTTTAAGAATT+TGG + chr3.1:68835301-68835320 MS.gene79116:CDS 25.0%
ATATCACAAACATCACTTTC+GGG + chr3.1:68834565-68834584 MS.gene79116:CDS 30.0%
GATATCACAAACATCACTTT+CGG + chr3.1:68834564-68834583 MS.gene79116:CDS 30.0%
TAATATTTGCCCAACTATTG+AGG - chr3.1:68834680-68834699 None:intergenic 30.0%
! AGAGCATTTGGAATTTCTTA+AGG + chr3.1:68835157-68835176 MS.gene79116:CDS 30.0%
! GTCAAATCCCGAAATATTTT+TGG - chr3.1:68834757-68834776 None:intergenic 30.0%
!! GTGATTCTTGTTTCTATGTA+AGG - chr3.1:68834468-68834487 None:intergenic 30.0%
!! TAAGGAAAGTTTTGATAGAG+TGG + chr3.1:68835175-68835194 MS.gene79116:CDS 30.0%
!!! CTCAATTTTTTTAGTTGTGG+TGG + chr3.1:68834594-68834613 MS.gene79116:CDS 30.0%
!!! TAGGGAATTTTTTAGAGTGT+TGG - chr3.1:68834364-68834383 None:intergenic 30.0%
!!! TTTTGTTTTTAATGCTGACG+TGG + chr3.1:68834818-68834837 MS.gene79116:CDS 30.0%
ATAACGATTCCGAAGATGAA+TGG + chr3.1:68835044-68835063 MS.gene79116:CDS 35.0%
GATGGTGTACAAAGAAACTA+TGG + chr3.1:68834939-68834958 MS.gene79116:CDS 35.0%
TAGTTACCAAACGATTCTGA+AGG - chr3.1:68835011-68835030 None:intergenic 35.0%
TATGTGAAGAAGGTTCAAGA+AGG + chr3.1:68835131-68835150 MS.gene79116:CDS 35.0%
TGTACAAAGAAACTATGGTG+TGG + chr3.1:68834944-68834963 MS.gene79116:CDS 35.0%
TTTCCCGCCCAAAAATATTT+CGG + chr3.1:68834746-68834765 MS.gene79116:CDS 35.0%
! CAAGTTGAAATGGAATCAGA+CGG - chr3.1:68834542-68834561 None:intergenic 35.0%
! GGTTGTGTTTGTTGATTGTA+GGG + chr3.1:68835322-68835341 MS.gene79116:CDS 35.0%
! TGGTTGTGTTTGTTGATTGT+AGG + chr3.1:68835321-68835340 MS.gene79116:CDS 35.0%
! TGTTTGTTGATTGTAGGGAT+GGG + chr3.1:68835327-68835346 MS.gene79116:CDS 35.0%
! TTTTGATAGAGTGGTTGTGA+AGG + chr3.1:68835184-68835203 MS.gene79116:CDS 35.0%
!! CCTTTGTATGATGCTGATTT+CGG + chr3.1:68835248-68835267 MS.gene79116:CDS 35.0%
!! GTGATATCGTCAAGTTGAAA+TGG - chr3.1:68834552-68834571 None:intergenic 35.0%
!! TCAAGAAGGTAAAGAGCATT+TGG + chr3.1:68835145-68835164 MS.gene79116:CDS 35.0%
!!! AATCCCGAAATATTTTTGGG+CGG - chr3.1:68834753-68834772 None:intergenic 35.0%
!!! AGGCTTTATCGGCTTTTATA+TGG + chr3.1:68834889-68834908 MS.gene79116:CDS 35.0%
AAACTATGGTGTGGTTCATG+CGG + chr3.1:68834953-68834972 MS.gene79116:CDS 40.0%
ATCAGACGGTTGAGTTCATT+TGG - chr3.1:68834528-68834547 None:intergenic 40.0%
CAAAGGAAACCTACACAAAC+TGG - chr3.1:68835234-68835253 None:intergenic 40.0%
CCGAAATCAGCATCATACAA+AGG - chr3.1:68835251-68835270 None:intergenic 40.0%
CTCAAGCTTCAAGCTAACAT+AGG - chr3.1:68835366-68835385 None:intergenic 40.0%
CTTAACTCATTTCTACCCTC+TGG + chr3.1:68834392-68834411 MS.gene79116:CDS 40.0%
GGTGAATTTGCGCCAAAAAA+TGG + chr3.1:68834974-68834993 MS.gene79116:CDS 40.0%
TAGCTTGAAGCTTGAGGATA+TGG + chr3.1:68835370-68835389 MS.gene79116:CDS 40.0%
TCAGACGGTTGAGTTCATTT+GGG - chr3.1:68834527-68834546 None:intergenic 40.0%
TTCATACACTGCAATGACGA+AGG + chr3.1:68834438-68834457 MS.gene79116:CDS 40.0%
TTCCCGCCCAAAAATATTTC+GGG + chr3.1:68834747-68834766 MS.gene79116:CDS 40.0%
! AGTTGTGGTGGAATTGCAAT+CGG + chr3.1:68834606-68834625 MS.gene79116:CDS 40.0%
! CCAAACGATTCTGAAGGTAA+CGG - chr3.1:68835005-68835024 None:intergenic 40.0%
! CTATGTTAGCTTGAAGCTTG+AGG + chr3.1:68835364-68835383 MS.gene79116:CDS 40.0%
! CTTTGGTGATACCACTTCTA+GGG - chr3.1:68834779-68834798 None:intergenic 40.0%
! GGTTAAGTTTGAAGCTGACT+TGG + chr3.1:68835391-68835410 MS.gene79116:CDS 40.0%
! GTGTTTGTTGATTGTAGGGA+TGG + chr3.1:68835326-68835345 MS.gene79116:CDS 40.0%
! GTTTGTTGATTGTAGGGATG+GGG + chr3.1:68835328-68835347 MS.gene79116:CDS 40.0%
! TCTTTGGTGATACCACTTCT+AGG - chr3.1:68834780-68834799 None:intergenic 40.0%
! TTTGTTGATTGTAGGGATGG+GGG + chr3.1:68835329-68835348 MS.gene79116:CDS 40.0%
! TTTTAATCCTACACGCGTTG+AGG + chr3.1:68834869-68834888 MS.gene79116:CDS 40.0%
!! GTATGATGCTGATTTCGGTT+GGG + chr3.1:68835253-68835272 MS.gene79116:CDS 40.0%
!! TATGATGCTGATTTCGGTTG+GGG + chr3.1:68835254-68835273 MS.gene79116:CDS 40.0%
!! TGTATGATGCTGATTTCGGT+TGG + chr3.1:68835252-68835271 MS.gene79116:CDS 40.0%
!!! ATCCCGAAATATTTTTGGGC+GGG - chr3.1:68834752-68834771 None:intergenic 40.0%
!!! GTAACGGTGGTTCCATTTTT+TGG - chr3.1:68834989-68835008 None:intergenic 40.0%
ACGATTCCGAAGATGAATGG+CGG + chr3.1:68835047-68835066 MS.gene79116:CDS 45.0%
AGTGGTTGTGAAGGAGGAAT+TGG + chr3.1:68835193-68835212 MS.gene79116:CDS 45.0%
CCGTTACCTTCAGAATCGTT+TGG + chr3.1:68835002-68835021 MS.gene79116:CDS 45.0%
CTTTCGCATCAAATAGCCGA+TGG + chr3.1:68834636-68834655 MS.gene79116:CDS 45.0%
GAGAGTAGAAGAGGACGATA+GGG - chr3.1:68834311-68834330 None:intergenic 45.0%
TCTTCTCCGCCATTCATCTT+CGG - chr3.1:68835056-68835075 None:intergenic 45.0%
TGAGAGTAGAAGAGGACGAT+AGG - chr3.1:68834312-68834331 None:intergenic 45.0%
TGATAGAGTGGTTGTGAAGG+AGG + chr3.1:68835187-68835206 MS.gene79116:CDS 45.0%
TGTCGTTGTGAGAGTAGAAG+AGG - chr3.1:68834320-68834339 None:intergenic 45.0%
! AACGATTCTGAAGGTAACGG+TGG - chr3.1:68835002-68835021 None:intergenic 45.0%
! CGGTTGAGTTCATTTGGGAT+TGG - chr3.1:68834522-68834541 None:intergenic 45.0%
! TACACGCGTTGAGGCTTTAT+CGG + chr3.1:68834878-68834897 MS.gene79116:CDS 45.0%
!! AATGGCGGAGAAGAGTGTTA+CGG + chr3.1:68835062-68835081 MS.gene79116:CDS 45.0%
ACTCATTTCTACCCTCTGGC+AGG + chr3.1:68834396-68834415 MS.gene79116:CDS 50.0%
CGGTTGGGGCAAACCTATTT+GGG + chr3.1:68835268-68835287 MS.gene79116:CDS 50.0%
GATAAAGCCTCAACGCGTGT+AGG - chr3.1:68834879-68834898 None:intergenic 50.0%
GCAGGTGAACCAACCCAAAT+AGG - chr3.1:68835284-68835303 None:intergenic 50.0%
TCGGGATTTGACCCTAGAAG+TGG + chr3.1:68834765-68834784 MS.gene79116:CDS 50.0%
TCGGTTGGGGCAAACCTATT+TGG + chr3.1:68835267-68835286 MS.gene79116:CDS 50.0%
TGGGGCAAACCTATTTGGGT+TGG + chr3.1:68835272-68835291 MS.gene79116:CDS 50.0%
TGTTCAATCGTCCTGCCAGA+GGG - chr3.1:68834410-68834429 None:intergenic 50.0%
TTGTTCAATCGTCCTGCCAG+AGG - chr3.1:68834411-68834430 None:intergenic 50.0%
!! ATGGCGGAGAAGAGTGTTAC+GGG + chr3.1:68835063-68835082 MS.gene79116:CDS 50.0%
GTTGATTGTAGGGATGGGGG+TGG + chr3.1:68835332-68835351 MS.gene79116:CDS 55.0%
TAGGGATGGGGGTGGTATTG+AGG + chr3.1:68835340-68835359 MS.gene79116:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 68834297 68835439 68834297 ID=MS.gene79116
chr3.1 mRNA 68834297 68835439 68834297 ID=MS.gene79116.t1;Parent=MS.gene79116
chr3.1 exon 68834297 68835439 68834297 ID=MS.gene79116.t1.exon1;Parent=MS.gene79116.t1
chr3.1 CDS 68834297 68835439 68834297 ID=cds.MS.gene79116.t1;Parent=MS.gene79116.t1
Gene Sequence

>MS.gene79116

ATGGTTTACAACCCTATCGTCCTCTTCTACTCTCACAACGACACACTCAACACAACAACCATATCCAACACTCTAAAAAATTCCCTATCAAACATCTTAACTCATTTCTACCCTCTGGCAGGACGATTGAACAACAAAAACTTCATACACTGCAATGACGAAGGAATCCCTTACATAGAAACAAGAATCACAAACTACAATCTCAAAGACATTATTCAAAATCCAATCCCAAATGAACTCAACCGTCTGATTCCATTTCAACTTGACGATATCACAAACATCACTTTCGGGATTCAACTCAATTTTTTTAGTTGTGGTGGAATTGCAATCGGTGCTTGTCTTTCGCATCAAATAGCCGATGGTTTATCATTTTTCAATTTCCTCAATAGTTGGGCAAATATTACTAGAAAATCGATTTTTCCAAAACCTATTTTTGATTCTTCTAAGCTTTTCCCGCCCAAAAATATTTCGGGATTTGACCCTAGAAGTGGTATCACCAAAGATAATATAGTTTGCAAAATTTTTGTTTTTAATGCTGACGTGGTTGAAAATCTAAGAGCAAAATATATTAATTTTAATCCTACACGCGTTGAGGCTTTATCGGCTTTTATATGGAGTCGTTATGTTGATGTGATTTATAATGATGGTGTACAAAGAAACTATGGTGTGGTTCATGCGGTGAATTTGCGCCAAAAAATGGAACCACCGTTACCTTCAGAATCGTTTGGTAACTATTTGCGATTTACAATAACGATTCCGAAGATGAATGGCGGAGAAGAGTGTTACGGGTTAGCGAAGCAAGTGAGAGATGAGATAAAGAAGATTGATAAAGAATATGTGAAGAAGGTTCAAGAAGGTAAAGAGCATTTGGAATTTCTTAAGGAAAGTTTTGATAGAGTGGTTGTGAAGGAGGAATTGGTTGTGTTTAATTTTACCAGTTTGTGTAGGTTTCCTTTGTATGATGCTGATTTCGGTTGGGGCAAACCTATTTGGGTTGGTTCACCTGCTTTGACTTTTAAGAATTTGGTTGTGTTTGTTGATTGTAGGGATGGGGGTGGTATTGAGGCCTATGTTAGCTTGAAGCTTGAGGATATGGTTAAGTTTGAAGCTGACTTGGAGTTACTTGCATGTGTGAATAAATGA
Protein sequence

>MS.gene79116.t1

MVYNPIVLFYSHNDTLNTTTISNTLKNSLSNILTHFYPLAGRLNNKNFIHCNDEGIPYIETRITNYNLKDIIQNPIPNELNRLIPFQLDDITNITFGIQLNFFSCGGIAIGACLSHQIADGLSFFNFLNSWANITRKSIFPKPIFDSSKLFPPKNISGFDPRSGITKDNIVCKIFVFNADVVENLRAKYINFNPTRVEALSAFIWSRYVDVIYNDGVQRNYGVVHAVNLRQKMEPPLPSESFGNYLRFTITIPKMNGGEECYGLAKQVRDEIKKIDKEYVKKVQEGKEHLEFLKESFDRVVVKEELVVFNFTSLCRFPLYDADFGWGKPIWVGSPALTFKNLVVFVDCRDGGGIEAYVSLKLEDMVKFEADLELLACVNK