Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49940.t1 | XP_003620496.1 | 95.8 | 143 | 3 | 1 | 29 | 168 | 260 | 402 | 6.90E-75 | 290 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49940.t1 | Q3MHV9 | 36.6 | 71 | 43 | 1 | 89 | 159 | 378 | 446 | 2.5e-09 | 63.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49940.t1 | G7KNG0 | 95.8 | 143 | 3 | 1 | 29 | 168 | 260 | 402 | 5.0e-75 | 290.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene49940 | 0.819498 | 1.13E-52 | -1.69E-46 |
| MS.gene049151 | MS.gene49940 | 0.825715 | 4.03E-54 | -1.69E-46 |
| MS.gene049153 | MS.gene49940 | 0.816262 | 6.05E-52 | -1.69E-46 |
| MS.gene049159 | MS.gene49940 | 0.867204 | 1.63E-65 | -1.69E-46 |
| MS.gene049230 | MS.gene49940 | 0.828283 | 9.80E-55 | -1.69E-46 |
| MS.gene049378 | MS.gene49940 | 0.827854 | 1.24E-54 | -1.69E-46 |
| MS.gene049424 | MS.gene49940 | 0.824051 | 9.95E-54 | -1.69E-46 |
| MS.gene049435 | MS.gene49940 | 0.821732 | 3.45E-53 | -1.69E-46 |
| MS.gene049452 | MS.gene49940 | 0.816956 | 4.23E-52 | -1.69E-46 |
| MS.gene049669 | MS.gene49940 | 0.814892 | 1.22E-51 | -1.69E-46 |
| MS.gene050105 | MS.gene49940 | 0.821914 | 3.13E-53 | -1.69E-46 |
| MS.gene050226 | MS.gene49940 | 0.832542 | 8.91E-56 | -1.69E-46 |
| MS.gene050227 | MS.gene49940 | 0.835564 | 1.56E-56 | -1.69E-46 |
| MS.gene050228 | MS.gene49940 | 0.834319 | 3.21E-56 | -1.69E-46 |
| MS.gene050442 | MS.gene49940 | 0.870319 | 1.60E-66 | -1.69E-46 |
| MS.gene050605 | MS.gene49940 | 0.856488 | 3.11E-62 | -1.69E-46 |
| MS.gene050623 | MS.gene49940 | -0.831474 | 1.64E-55 | -1.69E-46 |
| MS.gene050642 | MS.gene49940 | 0.814784 | 1.29E-51 | -1.69E-46 |
| MS.gene050680 | MS.gene49940 | 0.881935 | 1.59E-70 | -1.69E-46 |
| MS.gene050724 | MS.gene49940 | 0.801724 | 7.87E-49 | -1.69E-46 |
| MS.gene050750 | MS.gene49940 | 0.861105 | 1.30E-63 | -1.69E-46 |
| MS.gene050759 | MS.gene49940 | 0.805146 | 1.54E-49 | -1.69E-46 |
| MS.gene050820 | MS.gene49940 | 0.812381 | 4.36E-51 | -1.69E-46 |
| MS.gene050826 | MS.gene49940 | 0.805123 | 1.55E-49 | -1.69E-46 |
| MS.gene050844 | MS.gene49940 | 0.803429 | 3.50E-49 | -1.69E-46 |
| MS.gene050953 | MS.gene49940 | 0.880718 | 4.36E-70 | -1.69E-46 |
| MS.gene050987 | MS.gene49940 | 0.810837 | 9.45E-51 | -1.69E-46 |
| MS.gene051122 | MS.gene49940 | 0.800844 | 1.19E-48 | -1.69E-46 |
| MS.gene051198 | MS.gene49940 | 0.817053 | 4.03E-52 | -1.69E-46 |
| MS.gene051243 | MS.gene49940 | 0.819558 | 1.09E-52 | -1.69E-46 |
| MS.gene051349 | MS.gene49940 | 0.811842 | 5.72E-51 | -1.69E-46 |
| MS.gene051368 | MS.gene49940 | 0.841798 | 3.82E-58 | -1.69E-46 |
| MS.gene051370 | MS.gene49940 | 0.836161 | 1.10E-56 | -1.69E-46 |
| MS.gene051452 | MS.gene49940 | 0.839863 | 1.23E-57 | -1.69E-46 |
| MS.gene051535 | MS.gene49940 | 0.833594 | 4.88E-56 | -1.69E-46 |
| MS.gene051800 | MS.gene49940 | 0.809847 | 1.55E-50 | -1.69E-46 |
| MS.gene051926 | MS.gene49940 | -0.801337 | 9.45E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene49940 | 0.828547 | 8.46E-55 | -1.69E-46 |
| MS.gene052012 | MS.gene49940 | 0.815745 | 7.90E-52 | -1.69E-46 |
| MS.gene052176 | MS.gene49940 | 0.814733 | 1.33E-51 | -1.69E-46 |
| MS.gene052190 | MS.gene49940 | 0.800745 | 1.25E-48 | -1.69E-46 |
| MS.gene052333 | MS.gene49940 | 0.852308 | 5.03E-61 | -1.69E-46 |
| MS.gene052426 | MS.gene49940 | 0.902139 | 1.32E-78 | -1.69E-46 |
| MS.gene052500 | MS.gene49940 | 0.804133 | 2.50E-49 | -1.69E-46 |
| MS.gene052502 | MS.gene49940 | 0.800828 | 1.20E-48 | -1.69E-46 |
| MS.gene052519 | MS.gene49940 | 0.801341 | 9.43E-49 | -1.69E-46 |
| MS.gene052674 | MS.gene49940 | 0.810389 | 1.18E-50 | -1.69E-46 |
| MS.gene052675 | MS.gene49940 | 0.808934 | 2.43E-50 | -1.69E-46 |
| MS.gene052677 | MS.gene49940 | 0.818867 | 1.57E-52 | -1.69E-46 |
| MS.gene052826 | MS.gene49940 | 0.802758 | 4.82E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene49940 | 0.809449 | 1.88E-50 | -1.69E-46 |
| MS.gene052867 | MS.gene49940 | 0.815342 | 9.71E-52 | -1.69E-46 |
| MS.gene05288 | MS.gene49940 | 0.826604 | 2.48E-54 | -1.69E-46 |
| MS.gene05289 | MS.gene49940 | 0.82846 | 8.88E-55 | -1.69E-46 |
| MS.gene052954 | MS.gene49940 | 0.828833 | 7.22E-55 | -1.69E-46 |
| MS.gene053006 | MS.gene49940 | 0.815505 | 8.93E-52 | -1.69E-46 |
| MS.gene053008 | MS.gene49940 | 0.844538 | 7.10E-59 | -1.69E-46 |
| MS.gene053166 | MS.gene49940 | 0.856461 | 3.17E-62 | -1.69E-46 |
| MS.gene053188 | MS.gene49940 | 0.802356 | 5.83E-49 | -1.69E-46 |
| MS.gene053216 | MS.gene49940 | 0.820451 | 6.81E-53 | -1.69E-46 |
| MS.gene053494 | MS.gene49940 | 0.855338 | 6.75E-62 | -1.69E-46 |
| MS.gene053584 | MS.gene49940 | 0.803384 | 3.58E-49 | -1.69E-46 |
| MS.gene05414 | MS.gene49940 | 0.807735 | 4.37E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene49940 | 0.833817 | 4.29E-56 | -1.69E-46 |
| MS.gene054236 | MS.gene49940 | 0.810061 | 1.39E-50 | -1.69E-46 |
| MS.gene054379 | MS.gene49940 | 0.805414 | 1.35E-49 | -1.69E-46 |
| MS.gene054405 | MS.gene49940 | 0.875226 | 3.64E-68 | -1.69E-46 |
| MS.gene054472 | MS.gene49940 | 0.804523 | 2.07E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene49940 | 0.810443 | 1.15E-50 | -1.69E-46 |
| MS.gene054559 | MS.gene49940 | 0.83904 | 2.01E-57 | -1.69E-46 |
| MS.gene054657 | MS.gene49940 | 0.858142 | 1.01E-62 | -1.69E-46 |
| MS.gene054658 | MS.gene49940 | 0.838559 | 2.68E-57 | -1.69E-46 |
| MS.gene054930 | MS.gene49940 | 0.844945 | 5.52E-59 | -1.69E-46 |
| MS.gene054994 | MS.gene49940 | 0.8058 | 1.12E-49 | -1.69E-46 |
| MS.gene05510 | MS.gene49940 | 0.95575 | 1.48E-113 | -1.69E-46 |
| MS.gene055222 | MS.gene49940 | 0.808807 | 2.58E-50 | -1.69E-46 |
| MS.gene055227 | MS.gene49940 | 0.806832 | 6.79E-50 | -1.69E-46 |
| MS.gene055230 | MS.gene49940 | 0.807188 | 5.71E-50 | -1.69E-46 |
| MS.gene055358 | MS.gene49940 | 0.800196 | 1.61E-48 | -1.69E-46 |
| MS.gene055367 | MS.gene49940 | 0.810555 | 1.09E-50 | -1.69E-46 |
| MS.gene055623 | MS.gene49940 | 0.871332 | 7.41E-67 | -1.69E-46 |
| MS.gene055701 | MS.gene49940 | 0.908381 | 1.82E-81 | -1.69E-46 |
| MS.gene055818 | MS.gene49940 | 0.846509 | 2.08E-59 | -1.69E-46 |
| MS.gene055926 | MS.gene49940 | 0.825017 | 5.90E-54 | -1.69E-46 |
| MS.gene056162 | MS.gene49940 | 0.812241 | 4.68E-51 | -1.69E-46 |
| MS.gene056480 | MS.gene49940 | 0.827149 | 1.84E-54 | -1.69E-46 |
| MS.gene056506 | MS.gene49940 | 0.852829 | 3.57E-61 | -1.69E-46 |
| MS.gene056873 | MS.gene49940 | 0.823546 | 1.31E-53 | -1.69E-46 |
| MS.gene056979 | MS.gene49940 | 0.824488 | 7.86E-54 | -1.69E-46 |
| MS.gene057026 | MS.gene49940 | 0.803371 | 3.60E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene49940 | 0.819281 | 1.26E-52 | -1.69E-46 |
| MS.gene057156 | MS.gene49940 | -0.81487 | 1.24E-51 | -1.69E-46 |
| MS.gene057194 | MS.gene49940 | 0.821381 | 4.16E-53 | -1.69E-46 |
| MS.gene057208 | MS.gene49940 | 0.820063 | 8.36E-53 | -1.69E-46 |
| MS.gene057394 | MS.gene49940 | 0.819981 | 8.73E-53 | -1.69E-46 |
| MS.gene057395 | MS.gene49940 | 0.812843 | 3.46E-51 | -1.69E-46 |
| MS.gene05761 | MS.gene49940 | 0.853047 | 3.09E-61 | -1.69E-46 |
| MS.gene057750 | MS.gene49940 | 0.822064 | 2.89E-53 | -1.69E-46 |
| MS.gene057869 | MS.gene49940 | 0.834568 | 2.78E-56 | -1.69E-46 |
| MS.gene058009 | MS.gene49940 | 0.806942 | 6.44E-50 | -1.69E-46 |
| MS.gene058010 | MS.gene49940 | 0.812742 | 3.64E-51 | -1.69E-46 |
| MS.gene058146 | MS.gene49940 | 0.868016 | 8.93E-66 | -1.69E-46 |
| MS.gene058399 | MS.gene49940 | 0.833156 | 6.27E-56 | -1.69E-46 |
| MS.gene058435 | MS.gene49940 | 0.832649 | 8.38E-56 | -1.69E-46 |
| MS.gene058548 | MS.gene49940 | 0.831833 | 1.33E-55 | -1.69E-46 |
| MS.gene058549 | MS.gene49940 | 0.807855 | 4.12E-50 | -1.69E-46 |
| MS.gene058595 | MS.gene49940 | 0.86371 | 2.05E-64 | -1.69E-46 |
| MS.gene058979 | MS.gene49940 | 0.818978 | 1.48E-52 | -1.69E-46 |
| MS.gene059128 | MS.gene49940 | 0.83881 | 2.31E-57 | -1.69E-46 |
| MS.gene059161 | MS.gene49940 | 0.857248 | 1.86E-62 | -1.69E-46 |
| MS.gene059249 | MS.gene49940 | 0.821164 | 4.67E-53 | -1.69E-46 |
| MS.gene059283 | MS.gene49940 | 0.803959 | 2.72E-49 | -1.69E-46 |
| MS.gene059317 | MS.gene49940 | 0.805719 | 1.17E-49 | -1.69E-46 |
| MS.gene059382 | MS.gene49940 | 0.802989 | 4.32E-49 | -1.69E-46 |
| MS.gene059503 | MS.gene49940 | 0.80758 | 4.72E-50 | -1.69E-46 |
| MS.gene059609 | MS.gene49940 | 0.831962 | 1.24E-55 | -1.69E-46 |
| MS.gene05979 | MS.gene49940 | 0.834815 | 2.41E-56 | -1.69E-46 |
| MS.gene059830 | MS.gene49940 | 0.802752 | 4.83E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene49940 | 0.808992 | 2.36E-50 | -1.69E-46 |
| MS.gene060011 | MS.gene49940 | 0.87604 | 1.91E-68 | -1.69E-46 |
| MS.gene060310 | MS.gene49940 | 0.820515 | 6.59E-53 | -1.69E-46 |
| MS.gene060322 | MS.gene49940 | 0.857222 | 1.89E-62 | -1.69E-46 |
| MS.gene06052 | MS.gene49940 | 0.804037 | 2.62E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene49940 | 0.810734 | 9.95E-51 | -1.69E-46 |
| MS.gene060683 | MS.gene49940 | 0.859399 | 4.25E-63 | -1.69E-46 |
| MS.gene060685 | MS.gene49940 | 0.857399 | 1.68E-62 | -1.69E-46 |
| MS.gene060802 | MS.gene49940 | 0.863708 | 2.05E-64 | -1.69E-46 |
| MS.gene060803 | MS.gene49940 | 0.866587 | 2.56E-65 | -1.69E-46 |
| MS.gene060918 | MS.gene49940 | 0.804189 | 2.43E-49 | -1.69E-46 |
| MS.gene060942 | MS.gene49940 | 0.818428 | 1.97E-52 | -1.69E-46 |
| MS.gene060998 | MS.gene49940 | 0.86605 | 3.79E-65 | -1.69E-46 |
| MS.gene061114 | MS.gene49940 | -0.809976 | 1.45E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49940.t1 | MTR_6g086060 | 95.804 | 143 | 3 | 1 | 29 | 168 | 260 | 402 | 2.53e-96 | 284 |
| MS.gene49940.t1 | MTR_8g103740 | 78.322 | 143 | 27 | 2 | 29 | 168 | 71 | 212 | 1.11e-79 | 235 |
| MS.gene49940.t1 | MTR_8g103740 | 78.322 | 143 | 27 | 2 | 29 | 168 | 162 | 303 | 2.17e-78 | 235 |
| MS.gene49940.t1 | MTR_8g103740 | 76.515 | 132 | 27 | 2 | 29 | 157 | 256 | 386 | 4.71e-67 | 209 |
| MS.gene49940.t1 | MTR_1g046480 | 54.478 | 134 | 57 | 2 | 29 | 159 | 274 | 406 | 1.60e-46 | 157 |
| MS.gene49940.t1 | MTR_2g022060 | 30.464 | 151 | 85 | 2 | 33 | 164 | 258 | 407 | 7.90e-17 | 77.0 |
| MS.gene49940.t1 | MTR_7g057720 | 44.186 | 86 | 46 | 1 | 81 | 164 | 324 | 409 | 1.16e-16 | 76.6 |
| MS.gene49940.t1 | MTR_7g057720 | 44.186 | 86 | 46 | 1 | 81 | 164 | 341 | 426 | 1.25e-16 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49940.t1 | AT3G24460 | 67.123 | 146 | 42 | 2 | 29 | 168 | 262 | 407 | 1.51e-67 | 211 |
| MS.gene49940.t1 | AT3G24460 | 67.123 | 146 | 42 | 2 | 29 | 168 | 262 | 407 | 1.51e-67 | 211 |
| MS.gene49940.t1 | AT4G13345 | 70.000 | 140 | 38 | 2 | 29 | 165 | 255 | 393 | 1.47e-66 | 208 |
| MS.gene49940.t1 | AT4G13345 | 68.571 | 140 | 40 | 2 | 29 | 165 | 255 | 393 | 1.17e-65 | 206 |
| MS.gene49940.t1 | AT4G13345 | 68.571 | 140 | 40 | 2 | 29 | 165 | 255 | 393 | 1.17e-65 | 206 |
| MS.gene49940.t1 | AT4G13345 | 70.400 | 125 | 33 | 2 | 29 | 150 | 255 | 378 | 7.65e-58 | 186 |
| MS.gene49940.t1 | AT2G33205 | 61.194 | 134 | 50 | 2 | 33 | 166 | 280 | 411 | 1.92e-50 | 167 |
| MS.gene49940.t1 | AT2G33205 | 59.259 | 135 | 53 | 2 | 33 | 166 | 170 | 303 | 4.41e-50 | 163 |
| MS.gene49940.t1 | AT2G33205 | 59.259 | 135 | 53 | 2 | 33 | 166 | 185 | 318 | 4.97e-50 | 164 |
| MS.gene49940.t1 | AT2G33205 | 59.259 | 135 | 53 | 2 | 33 | 166 | 280 | 413 | 4.66e-49 | 164 |
| MS.gene49940.t1 | AT2G33205 | 59.259 | 135 | 53 | 2 | 33 | 166 | 280 | 413 | 4.66e-49 | 164 |
| MS.gene49940.t1 | AT2G33205 | 58.824 | 119 | 47 | 2 | 33 | 150 | 280 | 397 | 7.52e-43 | 147 |
| MS.gene49940.t1 | AT4G13345 | 65.347 | 101 | 31 | 2 | 29 | 126 | 255 | 354 | 1.16e-40 | 140 |
| MS.gene49940.t1 | AT2G33205 | 55.789 | 95 | 40 | 2 | 33 | 126 | 280 | 373 | 6.13e-28 | 107 |
| MS.gene49940.t1 | AT3G06170 | 46.341 | 82 | 43 | 1 | 83 | 164 | 327 | 407 | 1.72e-16 | 75.9 |
| MS.gene49940.t1 | AT1G16180 | 30.065 | 153 | 83 | 3 | 33 | 164 | 262 | 411 | 2.51e-15 | 72.8 |
| MS.gene49940.t1 | AT1G16180 | 30.065 | 153 | 83 | 3 | 33 | 164 | 262 | 411 | 2.51e-15 | 72.8 |
Find 26 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAGATTCTAAATGCTTTC+AGG | 0.153702 | 6.4:-59359425 | MS.gene49940:intron |
| TGTTGGCAGAGCTTTGTTAT+TGG | 0.269454 | 6.4:-59359484 | MS.gene49940:intron |
| CTGATGCATTGATCTCCTTC+TGG | 0.269494 | 6.4:+59360228 | None:intergenic |
| GAGATACACTTGTCATGATT+TGG | 0.294464 | 6.4:+59361121 | None:intergenic |
| GATGATGTTCCATATGGATA+TGG | 0.339974 | 6.4:-59359285 | MS.gene49940:CDS |
| TACTTTGCAATGCTATTGAT+TGG | 0.370812 | 6.4:-59359228 | MS.gene49940:CDS |
| ATGTGGGCTGGACCAGTGCT+TGG | 0.396466 | 6.4:-59358799 | MS.gene49940:CDS |
| TGTCTTGCCTTCCATACAAT+TGG | 0.400690 | 6.4:+59358287 | None:intergenic |
| GGAACATCATCTTCTTCTGC+TGG | 0.439187 | 6.4:+59359297 | None:intergenic |
| CTGCAGATGGTCACTTGATG+TGG | 0.452717 | 6.4:-59358816 | MS.gene49940:intron |
| GAAGAAGATGATGTTCCATA+TGG | 0.466677 | 6.4:-59359291 | MS.gene49940:CDS |
| TGCTGATAGCTCCAATTGTA+TGG | 0.471218 | 6.4:-59358298 | MS.gene49940:CDS |
| GATCAATGCATCAGAACATC+AGG | 0.477126 | 6.4:-59360219 | MS.gene49940:CDS |
| TTGCAATGCTATTGATTGGA+TGG | 0.487844 | 6.4:-59359224 | MS.gene49940:CDS |
| GATGGTCACTTGATGTGGGC+TGG | 0.502453 | 6.4:-59358811 | MS.gene49940:CDS |
| TGTGGGCTGGACCAGTGCTT+GGG | 0.503046 | 6.4:-59358798 | MS.gene49940:CDS |
| TACTATTCTGACCCAAGCAC+TGG | 0.503124 | 6.4:+59358787 | None:intergenic |
| CATTAATTTGCAGCTAAGGA+AGG | 0.506153 | 6.4:-59359328 | MS.gene49940:intron |
| TGCAGATGGTCACTTGATGT+GGG | 0.517995 | 6.4:-59358815 | MS.gene49940:intron |
| CAGAATAGTAAATGAATGGT+TGG | 0.523254 | 6.4:-59358774 | MS.gene49940:CDS |
| ATTAATTTGCAGCTAAGGAA+GGG | 0.543167 | 6.4:-59359327 | MS.gene49940:intron |
| GGGTCAGAATAGTAAATGAA+TGG | 0.552152 | 6.4:-59358778 | MS.gene49940:CDS |
| GATAGCTCCAATTGTATGGA+AGG | 0.571406 | 6.4:-59358294 | MS.gene49940:CDS |
| TGCAAAGTACATAGCTCCTG+TGG | 0.637719 | 6.4:+59359242 | None:intergenic |
| GCACTGTAACCAAAACAGAC+TGG | 0.637874 | 6.4:-59360197 | MS.gene49940:CDS |
| TGTGCATGCAGTGAACCAGA+AGG | 0.646240 | 6.4:-59360243 | MS.gene49940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTAAAAATGCAAAAAA+AGG | + | chr6.4:59358554-59358573 | None:intergenic | 10.0% |
| !! | ATATTCAATAGAAATAAAAA+GGG | + | chr6.4:59359157-59359176 | None:intergenic | 10.0% |
| !! | TATATTCAATAGAAATAAAA+AGG | + | chr6.4:59359158-59359177 | None:intergenic | 10.0% |
| !!! | GTATGAATTTTTTAATTTAT+TGG | + | chr6.4:59359589-59359608 | None:intergenic | 10.0% |
| !! | ACTTTCAAAAATCAAATTTA+AGG | + | chr6.4:59358840-59358859 | None:intergenic | 15.0% |
| !!! | AGTTTTTTTTTTCCTTTTTT+CGG | - | chr6.4:59360704-59360723 | MS.gene49940:intron | 15.0% |
| !!! | ATTTTTATCGATTTATGTTA+GGG | - | chr6.4:59358697-59358716 | MS.gene49940:intron | 15.0% |
| !!! | CTTAAATAAAACATACTTTT+GGG | + | chr6.4:59358346-59358365 | None:intergenic | 15.0% |
| !!! | TCTTAAATAAAACATACTTT+TGG | + | chr6.4:59358347-59358366 | None:intergenic | 15.0% |
| !!! | TTATGTTTGTTTATGTATTT+TGG | - | chr6.4:59359343-59359362 | MS.gene49940:intron | 15.0% |
| !!! | TTCATTTTTTAAACTACTAT+TGG | - | chr6.4:59361011-59361030 | MS.gene49940:intron | 15.0% |
| !!! | TTTTCATATTAAAAATGTCT+CGG | - | chr6.4:59358972-59358991 | MS.gene49940:intron | 15.0% |
| !! | AATATAAAACACAAAATACC+TGG | - | chr6.4:59359070-59359089 | MS.gene49940:intron | 20.0% |
| !! | TCATTGGAAACATATTTATT+GGG | + | chr6.4:59360385-59360404 | None:intergenic | 20.0% |
| !! | TTCATTGGAAACATATTTAT+TGG | + | chr6.4:59360386-59360405 | None:intergenic | 20.0% |
| !! | TTTCATATTAAAAATGTCTC+GGG | - | chr6.4:59358973-59358992 | MS.gene49940:intron | 20.0% |
| !!! | AACTTTTTTTTTGTGTCAAT+AGG | - | chr6.4:59358446-59358465 | MS.gene49940:intron | 20.0% |
| !!! | AAGAACAGCTATAAATTTTT+TGG | - | chr6.4:59360588-59360607 | MS.gene49940:intron | 20.0% |
| !!! | ACATATTTTTCTAACTAGTT+TGG | - | chr6.4:59359383-59359402 | MS.gene49940:intron | 20.0% |
| !!! | GATTTTTATCGATTTATGTT+AGG | - | chr6.4:59358696-59358715 | MS.gene49940:intron | 20.0% |
| !!! | TTCTTATCATTTTTACAGTA+TGG | - | chr6.4:59361115-59361134 | MS.gene49940:CDS | 20.0% |
| !!! | TTTGACTTTCAAATTTAGAA+TGG | + | chr6.4:59358783-59358802 | None:intergenic | 20.0% |
| !!! | TTTTAGTAGAATTGACTTTA+GGG | - | chr6.4:59358750-59358769 | MS.gene49940:intron | 20.0% |
| ! | AAATTCATACAAACCAATTG+TGG | - | chr6.4:59359599-59359618 | MS.gene49940:intron | 25.0% |
| ! | AAGTGATGAAAAATATGTTG+AGG | + | chr6.4:59358280-59358299 | None:intergenic | 25.0% |
| ! | AATGTACAATGACAACAAAA+GGG | + | chr6.4:59359844-59359863 | None:intergenic | 25.0% |
| ! | ATGAAAATTTCCCTAGAAAA+AGG | + | chr6.4:59358423-59358442 | None:intergenic | 25.0% |
| ! | ATTATTATGATGTCACAAGA+TGG | + | chr6.4:59359455-59359474 | None:intergenic | 25.0% |
| ! | CAAAGAAAAGAAAAACAAGT+GGG | - | chr6.4:59360320-59360339 | MS.gene49940:intron | 25.0% |
| ! | CATCACAAGTTAGAAATATT+AGG | - | chr6.4:59358727-59358746 | MS.gene49940:intron | 25.0% |
| ! | TAATCTATTTAGCGTATGTT+AGG | - | chr6.4:59360774-59360793 | MS.gene49940:intron | 25.0% |
| ! | TAGAACAATAGATCTTATGA+AGG | + | chr6.4:59361076-59361095 | None:intergenic | 25.0% |
| ! | TCAAAGAAAAGAAAAACAAG+TGG | - | chr6.4:59360319-59360338 | MS.gene49940:intron | 25.0% |
| ! | TCACATGAAAATCATATGAT+GGG | + | chr6.4:59358399-59358418 | None:intergenic | 25.0% |
| ! | TCATTTACTATGTGATAAGA+TGG | - | chr6.4:59359753-59359772 | MS.gene49940:intron | 25.0% |
| ! | TTCACATGAAAATCATATGA+TGG | + | chr6.4:59358400-59358419 | None:intergenic | 25.0% |
| ! | TTTATAGTAGCATGTGTATT+TGG | - | chr6.4:59360509-59360528 | MS.gene49940:intron | 25.0% |
| !! | TCAACATATTTTTCATCACT+TGG | - | chr6.4:59358279-59358298 | MS.gene49940:CDS | 25.0% |
| !! | TTTTTGTGTCAATAGGTAAA+TGG | - | chr6.4:59358453-59358472 | MS.gene49940:intron | 25.0% |
| !!! | ATATCATTAATTTGCAGCTA+AGG | - | chr6.4:59360105-59360124 | MS.gene49940:intron | 25.0% |
| !!! | GTTTTAGTAGAATTGACTTT+AGG | - | chr6.4:59358749-59358768 | MS.gene49940:intron | 25.0% |
| AAAGATTCTAAGCATGTGTT+TGG | + | chr6.4:59359027-59359046 | None:intergenic | 30.0% | |
| AACATTACTGTCTTCAATGT+TGG | - | chr6.4:59359912-59359931 | MS.gene49940:intron | 30.0% | |
| ACAAAACTGTGAATCAACTA+TGG | - | chr6.4:59359646-59359665 | MS.gene49940:intron | 30.0% | |
| ACATAAGCTTAAAGTGTGTT+TGG | - | chr6.4:59358876-59358895 | MS.gene49940:intron | 30.0% | |
| ATATGTTCTCAAGTAACAAG+AGG | + | chr6.4:59359369-59359388 | None:intergenic | 30.0% | |
| ATATGTTTCCAATGAAGCTT+AGG | - | chr6.4:59360390-59360409 | MS.gene49940:intron | 30.0% | |
| ATCATATTGCTTCCGAAAAA+AGG | + | chr6.4:59360719-59360738 | None:intergenic | 30.0% | |
| ATTATGAATCAGCTGTCTTA+TGG | + | chr6.4:59359682-59359701 | None:intergenic | 30.0% | |
| CAGAATAGTAAATGAATGGT+TGG | - | chr6.4:59360663-59360682 | MS.gene49940:intron | 30.0% | |
| CATAGATTCTAAATGCTTTC+AGG | - | chr6.4:59360012-59360031 | MS.gene49940:intron | 30.0% | |
| CATCATTCAATGAGAAAGTA+TGG | - | chr6.4:59360242-59360261 | MS.gene49940:CDS | 30.0% | |
| GAATGTACAATGACAACAAA+AGG | + | chr6.4:59359845-59359864 | None:intergenic | 30.0% | |
| GTGTAGCTTATAGAAAATCA+TGG | + | chr6.4:59360835-59360854 | None:intergenic | 30.0% | |
| TACTTTGCAATGCTATTGAT+TGG | - | chr6.4:59360209-59360228 | MS.gene49940:CDS | 30.0% | |
| TAGCTTATAGAAAATCATGG+TGG | + | chr6.4:59360832-59360851 | None:intergenic | 30.0% | |
| TATATGTTGTCTTCCTTTGT+TGG | - | chr6.4:59358505-59358524 | MS.gene49940:intron | 30.0% | |
| TGATGAAAAATATGTTGAGG+AGG | + | chr6.4:59358277-59358296 | None:intergenic | 30.0% | |
| TGGAAAAAACCATATCCATA+TGG | + | chr6.4:59360164-59360183 | None:intergenic | 30.0% | |
| TTAAGCAATGTTGTCTAAAC+TGG | + | chr6.4:59359732-59359751 | None:intergenic | 30.0% | |
| TTATGAATCAGCTGTCTTAT+GGG | + | chr6.4:59359681-59359700 | None:intergenic | 30.0% | |
| TTCCATCTTGTTCATGTTAT+GGG | - | chr6.4:59360265-59360284 | MS.gene49940:intron | 30.0% | |
| TTGTTCTAATGCACATCTAA+TGG | - | chr6.4:59361088-59361107 | MS.gene49940:intron | 30.0% | |
| TTTAGCATGTATTTAGTGTG+CGG | - | chr6.4:59358602-59358621 | MS.gene49940:intron | 30.0% | |
| ! | AAATCATATGATGGGAGAAA+AGG | + | chr6.4:59358391-59358410 | None:intergenic | 30.0% |
| ! | CTTAGAATCTTTTCTCCAAA+AGG | - | chr6.4:59359035-59359054 | MS.gene49940:intron | 30.0% |
| ! | GTTATTGCAACATTTTCAAC+AGG | - | chr6.4:59359989-59360008 | MS.gene49940:intron | 30.0% |
| ! | TGTGTTTTATATTGCATCCA+TGG | + | chr6.4:59359063-59359082 | None:intergenic | 30.0% |
| ! | TTAAAGTGTGTTTGGAACAA+CGG | - | chr6.4:59358884-59358903 | MS.gene49940:intron | 30.0% |
| ! | TTCATGTGAACCTTTTTCTA+GGG | - | chr6.4:59358410-59358429 | MS.gene49940:intron | 30.0% |
| ! | TTTCATGTGAACCTTTTTCT+AGG | - | chr6.4:59358409-59358428 | MS.gene49940:intron | 30.0% |
| !! | ATTAATTTGCAGCTAAGGAA+GGG | - | chr6.4:59360110-59360129 | MS.gene49940:intron | 30.0% |
| !! | ATTTTAAGTCCAGGATTGAT+GGG | - | chr6.4:59358480-59358499 | MS.gene49940:intron | 30.0% |
| !! | GATTTTTGAAAGTACAATCG+TGG | - | chr6.4:59358847-59358866 | MS.gene49940:intron | 30.0% |
| AAACCAATTGTGGTTCAACT+CGG | - | chr6.4:59359609-59359628 | MS.gene49940:intron | 35.0% | |
| AACTTAACCAGAGAAGAAAC+CGG | - | chr6.4:59359502-59359521 | MS.gene49940:intron | 35.0% | |
| AGAATACACCTAAGCTTCAT+TGG | + | chr6.4:59360401-59360420 | None:intergenic | 35.0% | |
| ATTATGATGTCACAAGATGG+TGG | + | chr6.4:59359452-59359471 | None:intergenic | 35.0% | |
| ATTTGATGTCCACTACATGT+CGG | - | chr6.4:59360955-59360974 | MS.gene49940:intron | 35.0% | |
| CAAAAATTTGATTGCGAACG+TGG | - | chr6.4:59358999-59359018 | MS.gene49940:intron | 35.0% | |
| CATGGTTCAATTCGTCTAAT+CGG | - | chr6.4:59359539-59359558 | MS.gene49940:intron | 35.0% | |
| GAAGAAGATGATGTTCCATA+TGG | - | chr6.4:59360146-59360165 | MS.gene49940:intron | 35.0% | |
| GAGATACACTTGTCATGATT+TGG | + | chr6.4:59358319-59358338 | None:intergenic | 35.0% | |
| GATGATGTTCCATATGGATA+TGG | - | chr6.4:59360152-59360171 | MS.gene49940:intron | 35.0% | |
| GGGTCAGAATAGTAAATGAA+TGG | - | chr6.4:59360659-59360678 | MS.gene49940:intron | 35.0% | |
| GTTCCATCTTGTTCATGTTA+TGG | - | chr6.4:59360264-59360283 | MS.gene49940:intron | 35.0% | |
| TCGTCTAATCGGTTAAACTA+GGG | - | chr6.4:59359550-59359569 | MS.gene49940:intron | 35.0% | |
| TGAAGCTTAGGTGTATTCTT+TGG | - | chr6.4:59360402-59360421 | MS.gene49940:intron | 35.0% | |
| TGACAACAAAAGGGAAAACA+TGG | + | chr6.4:59359835-59359854 | None:intergenic | 35.0% | |
| TGACATGTGACAATAACTGT+TGG | - | chr6.4:59359936-59359955 | MS.gene49940:intron | 35.0% | |
| TTAGCGTATGTTAGGTATCA+TGG | - | chr6.4:59360782-59360801 | MS.gene49940:intron | 35.0% | |
| TTCGTCTAATCGGTTAAACT+AGG | - | chr6.4:59359549-59359568 | MS.gene49940:intron | 35.0% | |
| TTGTGTCAATAGGTAAATGG+TGG | - | chr6.4:59358456-59358475 | MS.gene49940:intron | 35.0% | |
| ! | TTGCAATGCTATTGATTGGA+TGG | - | chr6.4:59360213-59360232 | MS.gene49940:CDS | 35.0% |
| !! | AGTAGAATTGACTTTAGGGT+TGG | - | chr6.4:59358754-59358773 | MS.gene49940:intron | 35.0% |
| !! | CATTAATTTGCAGCTAAGGA+AGG | - | chr6.4:59360109-59360128 | MS.gene49940:intron | 35.0% |
| !! | CATTTTAAGTCCAGGATTGA+TGG | - | chr6.4:59358479-59358498 | MS.gene49940:intron | 35.0% |
| !! | TTTTAAGTCCAGGATTGATG+GGG | - | chr6.4:59358481-59358500 | MS.gene49940:intron | 35.0% |
| !!! | TTCCATTTTGTTTTTGCCAC+AGG | - | chr6.4:59360179-59360198 | MS.gene49940:intron | 35.0% |
| ATAAGACATGATTGCATGCC+AGG | + | chr6.4:59359091-59359110 | None:intergenic | 40.0% | |
| ATTCAACCAGTTGAATCGAC+CGG | - | chr6.4:59359700-59359719 | MS.gene49940:intron | 40.0% | |
| CATGTTATGGGCATCATACT+TGG | - | chr6.4:59360277-59360296 | MS.gene49940:intron | 40.0% | |
| CGTATGTTAGGTATCATGGT+GGG | - | chr6.4:59360786-59360805 | MS.gene49940:intron | 40.0% | |
| CTCCTGTGGCAAAAACAAAA+TGG | + | chr6.4:59360184-59360203 | None:intergenic | 40.0% | |
| GATAGCTCCAATTGTATGGA+AGG | - | chr6.4:59361143-59361162 | MS.gene49940:CDS | 40.0% | |
| GATCAATGCATCAGAACATC+AGG | - | chr6.4:59359218-59359237 | MS.gene49940:CDS | 40.0% | |
| GTTGCTACTAAGTGTGTCTT+TGG | + | chr6.4:59360919-59360938 | None:intergenic | 40.0% | |
| TGCCCATAACATGAACAAGA+TGG | + | chr6.4:59360270-59360289 | None:intergenic | 40.0% | |
| TGCTGATAGCTCCAATTGTA+TGG | - | chr6.4:59361139-59361158 | MS.gene49940:CDS | 40.0% | |
| TGGAAACATTGTTCTGCAGA+TGG | - | chr6.4:59360608-59360627 | MS.gene49940:intron | 40.0% | |
| TGTCTTGCCTTCCATACAAT+TGG | + | chr6.4:59361153-59361172 | None:intergenic | 40.0% | |
| TTCTGATTGCACACCAACAA+AGG | + | chr6.4:59358521-59358540 | None:intergenic | 40.0% | |
| TTTGTTGGTGTGCAATCAGA+AGG | - | chr6.4:59358520-59358539 | MS.gene49940:intron | 40.0% | |
| ! | ATTGCATCCATGGTTCCTTT+TGG | + | chr6.4:59359053-59359072 | None:intergenic | 40.0% |
| ! | CTTTTCTCCAAAAGGAACCA+TGG | - | chr6.4:59359043-59359062 | MS.gene49940:intron | 40.0% |
| ! | GATGTTTTGCCAGTCTGTTT+TGG | + | chr6.4:59359252-59359271 | None:intergenic | 40.0% |
| !! | AATGGTGGCATTTTAAGTCC+AGG | - | chr6.4:59358471-59358490 | MS.gene49940:intron | 40.0% |
| !! | TGTTGGCAGAGCTTTGTTAT+TGG | - | chr6.4:59359953-59359972 | MS.gene49940:intron | 40.0% |
| ACATATAGCCCCATCAATCC+TGG | + | chr6.4:59358492-59358511 | None:intergenic | 45.0% | |
| GAATCAGCTGTCTTATGGGT+TGG | + | chr6.4:59359677-59359696 | None:intergenic | 45.0% | |
| GCACTGTAACCAAAACAGAC+TGG | - | chr6.4:59359240-59359259 | MS.gene49940:CDS | 45.0% | |
| GCGTATGTTAGGTATCATGG+TGG | - | chr6.4:59360785-59360804 | MS.gene49940:intron | 45.0% | |
| GGAACATCATCTTCTTCTGC+TGG | + | chr6.4:59360143-59360162 | None:intergenic | 45.0% | |
| GTGTGTCTTTGGTATCACAG+TGG | + | chr6.4:59360908-59360927 | None:intergenic | 45.0% | |
| TACTATTCTGACCCAAGCAC+TGG | + | chr6.4:59360653-59360672 | None:intergenic | 45.0% | |
| TGCAAAGTACATAGCTCCTG+TGG | + | chr6.4:59360198-59360217 | None:intergenic | 45.0% | |
| TGCAGATGGTCACTTGATGT+GGG | - | chr6.4:59360622-59360641 | MS.gene49940:intron | 45.0% | |
| TTGTCTAAACTGGACCGAAC+CGG | + | chr6.4:59359722-59359741 | None:intergenic | 45.0% | |
| ! | CTGATGCATTGATCTCCTTC+TGG | + | chr6.4:59359212-59359231 | None:intergenic | 45.0% |
| ! | GAACCGAGTTGAACCACAAT+TGG | + | chr6.4:59359615-59359634 | None:intergenic | 45.0% |
| ACCAGTTGAATCGACCGGTT+CGG | - | chr6.4:59359705-59359724 | MS.gene49940:intron | 50.0% | |
| CCATGACTCAGAAGTCTCAC+CGG | + | chr6.4:59359524-59359543 | None:intergenic | 50.0% | |
| CTGCAGATGGTCACTTGATG+TGG | - | chr6.4:59360621-59360640 | MS.gene49940:intron | 50.0% | |
| GTTCTCACACCGACATGTAG+TGG | + | chr6.4:59360967-59360986 | None:intergenic | 50.0% | |
| TGTGCATGCAGTGAACCAGA+AGG | - | chr6.4:59359194-59359213 | MS.gene49940:intron | 50.0% | |
| !! | AGTCTCACCGGTTTCTTCTC+TGG | + | chr6.4:59359512-59359531 | None:intergenic | 50.0% |
| CCGGTGAGACTTCTGAGTCA+TGG | - | chr6.4:59359521-59359540 | MS.gene49940:intron | 55.0% | |
| GATGGTCACTTGATGTGGGC+TGG | - | chr6.4:59360626-59360645 | MS.gene49940:intron | 55.0% | |
| ! | ACCGAACCGGTCGATTCAAC+TGG | + | chr6.4:59359709-59359728 | None:intergenic | 55.0% |
| !! | ATGTGGGCTGGACCAGTGCT+TGG | - | chr6.4:59360638-59360657 | MS.gene49940:intron | 60.0% |
| !! | TGTGGGCTGGACCAGTGCTT+GGG | - | chr6.4:59360639-59360658 | MS.gene49940:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 59358271 | 59361188 | 59358271 | ID=MS.gene49940 |
| chr6.4 | mRNA | 59358271 | 59361188 | 59358271 | ID=MS.gene49940.t1;Parent=MS.gene49940 |
| chr6.4 | exon | 59361110 | 59361188 | 59361110 | ID=MS.gene49940.t1.exon1;Parent=MS.gene49940.t1 |
| chr6.4 | CDS | 59361110 | 59361188 | 59361110 | ID=cds.MS.gene49940.t1;Parent=MS.gene49940.t1 |
| chr6.4 | exon | 59360185 | 59360273 | 59360185 | ID=MS.gene49940.t1.exon2;Parent=MS.gene49940.t1 |
| chr6.4 | CDS | 59360185 | 59360273 | 59360185 | ID=cds.MS.gene49940.t1;Parent=MS.gene49940.t1 |
| chr6.4 | exon | 59359426 | 59359497 | 59359426 | ID=MS.gene49940.t1.exon3;Parent=MS.gene49940.t1 |
| chr6.4 | CDS | 59359426 | 59359497 | 59359426 | ID=cds.MS.gene49940.t1;Parent=MS.gene49940.t1 |
| chr6.4 | exon | 59359201 | 59359337 | 59359201 | ID=MS.gene49940.t1.exon4;Parent=MS.gene49940.t1 |
| chr6.4 | CDS | 59359201 | 59359337 | 59359201 | ID=cds.MS.gene49940.t1;Parent=MS.gene49940.t1 |
| chr6.4 | exon | 59358759 | 59358832 | 59358759 | ID=MS.gene49940.t1.exon5;Parent=MS.gene49940.t1 |
| chr6.4 | CDS | 59358759 | 59358832 | 59358759 | ID=cds.MS.gene49940.t1;Parent=MS.gene49940.t1 |
| chr6.4 | exon | 59358271 | 59358326 | 59358271 | ID=MS.gene49940.t1.exon6;Parent=MS.gene49940.t1 |
| chr6.4 | CDS | 59358271 | 59358326 | 59358271 | ID=cds.MS.gene49940.t1;Parent=MS.gene49940.t1 |
| Gene Sequence |
| Protein sequence |
