Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86351.t1 | XP_003597841.1 | 99.3 | 150 | 1 | 0 | 1 | 150 | 1 | 150 | 2.70E-83 | 317.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86351.t1 | Q9SSB8 | 62.3 | 167 | 44 | 3 | 1 | 149 | 1 | 166 | 7.6e-50 | 198.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86351.t1 | G7IMH7 | 99.3 | 150 | 1 | 0 | 1 | 150 | 1 | 150 | 2.0e-83 | 317.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049400 | MS.gene86351 | 0.817443 | 3.29E-52 | -1.69E-46 |
| MS.gene050077 | MS.gene86351 | 0.817385 | 3.39E-52 | -1.69E-46 |
| MS.gene050680 | MS.gene86351 | -0.804369 | 2.23E-49 | -1.69E-46 |
| MS.gene051926 | MS.gene86351 | 0.83141 | 1.70E-55 | -1.69E-46 |
| MS.gene05212 | MS.gene86351 | 0.897012 | 2.12E-76 | -1.69E-46 |
| MS.gene052190 | MS.gene86351 | -0.828922 | 6.87E-55 | -1.69E-46 |
| MS.gene052333 | MS.gene86351 | -0.85937 | 4.33E-63 | -1.69E-46 |
| MS.gene053176 | MS.gene86351 | -0.820307 | 7.35E-53 | -1.69E-46 |
| MS.gene054183 | MS.gene86351 | -0.808809 | 2.58E-50 | -1.69E-46 |
| MS.gene054291 | MS.gene86351 | 0.830583 | 2.71E-55 | -1.69E-46 |
| MS.gene054548 | MS.gene86351 | -0.804238 | 2.38E-49 | -1.69E-46 |
| MS.gene054559 | MS.gene86351 | -0.815238 | 1.02E-51 | -1.69E-46 |
| MS.gene05491 | MS.gene86351 | 0.81207 | 5.10E-51 | -1.69E-46 |
| MS.gene055356 | MS.gene86351 | -0.818353 | 2.05E-52 | -1.69E-46 |
| MS.gene055358 | MS.gene86351 | -0.806301 | 8.79E-50 | -1.69E-46 |
| MS.gene055367 | MS.gene86351 | -0.827842 | 1.25E-54 | -1.69E-46 |
| MS.gene055455 | MS.gene86351 | 0.829341 | 5.43E-55 | -1.69E-46 |
| MS.gene055488 | MS.gene86351 | 0.80257 | 5.27E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene86351 | -0.82116 | 4.68E-53 | -1.69E-46 |
| MS.gene057156 | MS.gene86351 | 0.8403 | 9.45E-58 | -1.69E-46 |
| MS.gene059509 | MS.gene86351 | 0.805065 | 1.60E-49 | -1.69E-46 |
| MS.gene059609 | MS.gene86351 | -0.800716 | 1.26E-48 | -1.69E-46 |
| MS.gene061114 | MS.gene86351 | 0.870795 | 1.11E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86351.t1 | MTR_2g103150 | 99.333 | 150 | 1 | 0 | 1 | 150 | 1 | 150 | 3.13e-109 | 307 |
| MS.gene86351.t1 | MTR_4g011340 | 75.325 | 154 | 28 | 4 | 1 | 149 | 1 | 149 | 3.14e-75 | 221 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86351.t1 | AT1G80230 | 61.392 | 158 | 42 | 3 | 1 | 140 | 1 | 157 | 5.42e-59 | 181 |
| MS.gene86351.t1 | AT3G15640 | 58.491 | 159 | 45 | 4 | 1 | 140 | 1 | 157 | 1.49e-52 | 164 |
| MS.gene86351.t1 | AT3G15640 | 57.862 | 159 | 47 | 3 | 1 | 140 | 1 | 158 | 1.00e-51 | 162 |
| MS.gene86351.t1 | AT1G52710 | 59.302 | 86 | 35 | 0 | 65 | 150 | 4 | 89 | 1.94e-33 | 113 |
Find 56 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCATGATGTTGTCTGGTTT+TGG | 0.271011 | 2.3:-1742912 | MS.gene86351:CDS |
| GAGAATGAGATGAAGAAGTT+AGG | 0.298612 | 2.3:+1744620 | None:intergenic |
| GACCACCCTGAAGGTCCTTT+TGG | 0.374661 | 2.3:-1743684 | MS.gene86351:CDS |
| TTCGTGCCAAAAGGACCTTC+AGG | 0.388454 | 2.3:+1743678 | None:intergenic |
| GGACCTGGCGGTGATCCTTA+TGG | 0.392481 | 2.3:-1741677 | MS.gene86351:CDS |
| CGTTCATGACCGGTAGCAAT+TGG | 0.405824 | 2.3:+1744418 | None:intergenic |
| TACTATAACAGAAGGATTGT+TGG | 0.415818 | 2.3:-1743078 | MS.gene86351:CDS |
| GGCGACGTGGCGGCTGAGGC+CGG | 0.418601 | 2.3:+1744564 | None:intergenic |
| AGAATGAGATGAAGAAGTTA+GGG | 0.429164 | 2.3:+1744621 | None:intergenic |
| TGCACACACTGGACATTCAT+GGG | 0.432638 | 2.3:+1742873 | None:intergenic |
| GTGCACACACTGGACATTCA+TGG | 0.436671 | 2.3:+1742872 | None:intergenic |
| TGTTGGATGCCCCGGTGGTG+AGG | 0.446924 | 2.3:-1743061 | MS.gene86351:CDS |
| CGCCACGTCGCCACACAATC+AGG | 0.449393 | 2.3:-1744553 | MS.gene86351:intron |
| CACTTACCACCCTCACCACC+GGG | 0.453277 | 2.3:+1743051 | None:intergenic |
| CTTCAGGGTGGTCTATTTCA+AGG | 0.458207 | 2.3:+1743694 | None:intergenic |
| GGCGGCTGAGGCCGGCGAAT+CGG | 0.463992 | 2.3:+1744572 | None:intergenic |
| ACACTTACCACCCTCACCAC+CGG | 0.473884 | 2.3:+1743050 | None:intergenic |
| GTTGGATGCCCCGGTGGTGA+GGG | 0.475405 | 2.3:-1743060 | MS.gene86351:CDS |
| GTGTGGCGACGTGGCGGCTG+AGG | 0.482725 | 2.3:+1744560 | None:intergenic |
| TCTGATCAATGGTGTCCATA+AGG | 0.484112 | 2.3:+1741662 | None:intergenic |
| TTACTAACCTTCGTGCCAAA+AGG | 0.484133 | 2.3:+1743669 | None:intergenic |
| CATCCTCGATCCGCCGTCGC+CGG | 0.485063 | 2.3:-1744598 | MS.gene86351:CDS |
| GGTTGTGATTGTAGCTGGTT+CGG | 0.494202 | 2.3:-1744467 | MS.gene86351:intron |
| AGGATGAGCATGATGTTGTC+TGG | 0.496376 | 2.3:-1742918 | MS.gene86351:CDS |
| GGCGAATCGGAGACCGGCGA+CGG | 0.501941 | 2.3:+1744585 | None:intergenic |
| CAGCTTGAAGTGGTGGGACC+TGG | 0.505788 | 2.3:-1741692 | MS.gene86351:CDS |
| TGCGTTACAGCTTGAAGTGG+TGG | 0.516079 | 2.3:-1741699 | MS.gene86351:intron |
| GTCGCCGGTCTCCGATTCGC+CGG | 0.516296 | 2.3:-1744583 | MS.gene86351:CDS |
| TGAAAATACTGTGCACACAC+TGG | 0.523295 | 2.3:+1742862 | None:intergenic |
| AGAAGGATTGTTGGATGCCC+CGG | 0.526647 | 2.3:-1743069 | MS.gene86351:CDS |
| TCGTGCCAAAAGGACCTTCA+GGG | 0.538959 | 2.3:+1743679 | None:intergenic |
| TTAAGTCTTACTATAACAGA+AGG | 0.543566 | 2.3:-1743086 | MS.gene86351:CDS |
| GAGGCCGGCGAATCGGAGAC+CGG | 0.548914 | 2.3:+1744579 | None:intergenic |
| TAGTAAGACTTAACAACGGC+AGG | 0.550387 | 2.3:+1743096 | None:intergenic |
| GCGTTACAGCTTGAAGTGGT+GGG | 0.554549 | 2.3:-1741698 | MS.gene86351:intron |
| AATCTCCTCACGTTCATGAC+CGG | 0.554757 | 2.3:+1744408 | None:intergenic |
| GGATGCCCCGGTGGTGAGGG+TGG | 0.570608 | 2.3:-1743057 | MS.gene86351:intron |
| GATGTAGTTCCAATTGCTAC+CGG | 0.573966 | 2.3:-1744427 | MS.gene86351:CDS |
| GAATCGGAGACCGGCGACGG+CGG | 0.589478 | 2.3:+1744588 | None:intergenic |
| AGACCGGCGACGGCGGATCG+AGG | 0.592370 | 2.3:+1744595 | None:intergenic |
| TGTCCATAAGGATCACCGCC+AGG | 0.601139 | 2.3:+1741674 | None:intergenic |
| TTCTGCGTTACAGCTTGAAG+TGG | 0.625576 | 2.3:-1741702 | MS.gene86351:intron |
| TGCTACCGGTCATGAACGTG+AGG | 0.630864 | 2.3:-1744413 | MS.gene86351:CDS |
| TTCGGTGAAGAAGACAGTTG+AGG | 0.641042 | 2.3:-1744449 | MS.gene86351:CDS |
| GGAGATTCAAGCTGATCTTG+AGG | 0.651732 | 2.3:-1744392 | MS.gene86351:intron |
| CTTGAAATAGACCACCCTGA+AGG | 0.658668 | 2.3:-1743693 | MS.gene86351:CDS |
| GCACACACTGGACATTCATG+GGG | 0.668546 | 2.3:+1742874 | None:intergenic |
| TACCTGATTGTGTGGCGACG+TGG | 0.669661 | 2.3:+1744551 | None:intergenic |
| CTTGAAGTGGTGGGACCTGG+CGG | 0.684429 | 2.3:-1741689 | MS.gene86351:CDS |
| AGTGAAGATACCTGATTGTG+TGG | 0.687822 | 2.3:+1744543 | None:intergenic |
| CTGATTGTGTGGCGACGTGG+CGG | 0.691244 | 2.3:+1744554 | None:intergenic |
| TCTCAAACACCATCATGTGG+CGG | 0.696333 | 2.3:-1744672 | None:intergenic |
| AGGATTGTTGGATGCCCCGG+TGG | 0.708518 | 2.3:-1743066 | MS.gene86351:CDS |
| TGCCAAAAGGACCTTCAGGG+TGG | 0.711901 | 2.3:+1743682 | None:intergenic |
| GTTATAGTAAGACTTAACAA+CGG | 0.724381 | 2.3:+1743092 | None:intergenic |
| ACTTACCACCCTCACCACCG+GGG | 0.751343 | 2.3:+1743052 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACACAAGTTATAAATAAAAA+TGG | + | chr2.3:1742064-1742083 | None:intergenic | 15.0% |
| !! | ACATTTAAAAACTTTAGTAA+TGG | + | chr2.3:1742304-1742323 | None:intergenic | 15.0% |
| !! | CATTTAAAAACTTTAGTAAT+GGG | + | chr2.3:1742303-1742322 | None:intergenic | 15.0% |
| !! | GAAAAAGATGTAAAATAAAT+AGG | + | chr2.3:1743888-1743907 | None:intergenic | 15.0% |
| !! | TAAAATAAATAGGAATATGT+TGG | + | chr2.3:1743878-1743897 | None:intergenic | 15.0% |
| !!! | AAAATCACTTTTCTAAATTA+AGG | + | chr2.3:1742851-1742870 | None:intergenic | 15.0% |
| !!! | ACTAAAGTTTTTAAATGTTT+TGG | - | chr2.3:1742306-1742325 | MS.gene86351:intron | 15.0% |
| !!! | ATTTAACTAGAATTTGAAAT+TGG | + | chr2.3:1744504-1744523 | None:intergenic | 15.0% |
| !!! | CTAAAGTTTTTAAATGTTTT+GGG | - | chr2.3:1742307-1742326 | MS.gene86351:intron | 15.0% |
| !!! | GTTTATAACTTTATTTTTAC+TGG | - | chr2.3:1743503-1743522 | MS.gene86351:intron | 15.0% |
| !!! | TAAAGTTTTTAAATGTTTTG+GGG | - | chr2.3:1742308-1742327 | MS.gene86351:intron | 15.0% |
| !!! | TGATTTTAAATTTTAATCTG+AGG | - | chr2.3:1742191-1742210 | MS.gene86351:intron | 15.0% |
| !!! | TTAATTTAGAAAAGTGATTT+TGG | - | chr2.3:1742850-1742869 | MS.gene86351:intron | 15.0% |
| !!! | TTGTATTTTTTGTTTGTTTA+GGG | - | chr2.3:1742599-1742618 | MS.gene86351:intron | 15.0% |
| !!! | TTTGTATTTTTTGTTTGTTT+AGG | - | chr2.3:1742598-1742617 | MS.gene86351:intron | 15.0% |
| !! | ACAAAATGGAAAAATAAAAG+TGG | + | chr2.3:1742120-1742139 | None:intergenic | 20.0% |
| !! | CAAGTCATTCAAATTATTAA+AGG | + | chr2.3:1743681-1743700 | None:intergenic | 20.0% |
| !!! | CATATTATATAGGTTACTTT+TGG | - | chr2.3:1742555-1742574 | MS.gene86351:intron | 20.0% |
| !!! | GATTTTGATGAATTTTGATT+TGG | - | chr2.3:1741837-1741856 | MS.gene86351:intron | 20.0% |
| !!! | TATTTTCTGTCTTTAAACTT+TGG | + | chr2.3:1742932-1742951 | None:intergenic | 20.0% |
| !!! | TTTAAATTCTGCACAAATTT+TGG | + | chr2.3:1744306-1744325 | None:intergenic | 20.0% |
| !!! | TTTAGTAATGGGATAATAAA+TGG | + | chr2.3:1742292-1742311 | None:intergenic | 20.0% |
| !!! | TTTGAAATAGCAACTATATT+GGG | + | chr2.3:1742434-1742453 | None:intergenic | 20.0% |
| !!! | TTTTGAAATAGCAACTATAT+TGG | + | chr2.3:1742435-1742454 | None:intergenic | 20.0% |
| ! | AAAGTAACTCTTTCTCATAT+GGG | - | chr2.3:1743941-1743960 | MS.gene86351:intron | 25.0% |
| ! | AAGGATCTTATAATTAGGAA+TGG | + | chr2.3:1743786-1743805 | None:intergenic | 25.0% |
| ! | ACATTGTACTAAATAGCATA+TGG | - | chr2.3:1742456-1742475 | MS.gene86351:intron | 25.0% |
| ! | ATATCAGAATAAGAGTAGTT+CGG | + | chr2.3:1742163-1742182 | None:intergenic | 25.0% |
| ! | ATTACGGGAATTAAGAAAAT+TGG | + | chr2.3:1744015-1744034 | None:intergenic | 25.0% |
| ! | ATTATAAGTATTAGACAACG+TGG | + | chr2.3:1743158-1743177 | None:intergenic | 25.0% |
| ! | ATTCATCAAAATCAAGAACA+AGG | + | chr2.3:1741830-1741849 | None:intergenic | 25.0% |
| ! | ATTTAACTCCAAATTGATCT+TGG | + | chr2.3:1743532-1743551 | None:intergenic | 25.0% |
| ! | GACAAGACTTCATATTATAT+AGG | - | chr2.3:1742545-1742564 | MS.gene86351:intron | 25.0% |
| ! | GGACTAATAAAATTGTCAAA+AGG | + | chr2.3:1743805-1743824 | None:intergenic | 25.0% |
| ! | GTCAAAAGGATCTTATAATT+AGG | + | chr2.3:1743791-1743810 | None:intergenic | 25.0% |
| ! | GTTATAGTAAGACTTAACAA+CGG | + | chr2.3:1743236-1743255 | None:intergenic | 25.0% |
| ! | TAAAGTAACTCTTTCTCATA+TGG | - | chr2.3:1743940-1743959 | MS.gene86351:intron | 25.0% |
| ! | TATTTCCAAAACTACAGTAA+TGG | - | chr2.3:1742370-1742389 | MS.gene86351:intron | 25.0% |
| ! | TGCTTAAAGATGTATTATGA+AGG | - | chr2.3:1743082-1743101 | MS.gene86351:CDS | 25.0% |
| ! | TGTTTGATATAAAGAAACCA+CGG | - | chr2.3:1744388-1744407 | MS.gene86351:intron | 25.0% |
| ! | TTAAGTCTTACTATAACAGA+AGG | - | chr2.3:1743239-1743258 | MS.gene86351:intron | 25.0% |
| ! | TTATCTGACAATTGATTGTT+TGG | - | chr2.3:1743718-1743737 | MS.gene86351:intron | 25.0% |
| ! | TTGAAATAGCAACTATATTG+GGG | + | chr2.3:1742433-1742452 | None:intergenic | 25.0% |
| ! | TTGAAGTTTCCAAAGTTTAA+AGG | - | chr2.3:1742920-1742939 | MS.gene86351:CDS | 25.0% |
| !! | AGTTAGAGAAATGAATGTTT+TGG | - | chr2.3:1744222-1744241 | MS.gene86351:intron | 25.0% |
| !! | CACATTTTTCCTTTAAACTT+TGG | + | chr2.3:1743064-1743083 | None:intergenic | 25.0% |
| !! | TAAAGATGTTTTATGAAGGT+TGG | - | chr2.3:1742956-1742975 | MS.gene86351:intron | 25.0% |
| !! | TTTTCTTAATTCCCGTAATT+TGG | - | chr2.3:1744016-1744035 | MS.gene86351:intron | 25.0% |
| !!! | AACTTGTTTTTTTAATGCAG+AGG | - | chr2.3:1743387-1743406 | MS.gene86351:intron | 25.0% |
| !!! | ATTTTTTGTTTGTTTAGGGA+AGG | - | chr2.3:1742603-1742622 | MS.gene86351:intron | 25.0% |
| !!! | GAATGGTTTTGGTTTATTTT+TGG | - | chr2.3:1742822-1742841 | MS.gene86351:intron | 25.0% |
| !!! | GTGGTGCTAATTAATTTTTT+TGG | - | chr2.3:1744600-1744619 | MS.gene86351:CDS | 25.0% |
| !!! | TAACTCGTCAATTATTTTAG+AGG | + | chr2.3:1744207-1744226 | None:intergenic | 25.0% |
| !!! | TGTCAAAACACAGATTTTTT+AGG | + | chr2.3:1743647-1743666 | None:intergenic | 25.0% |
| ACAAAACATAAGCTCAGATA+TGG | + | chr2.3:1744371-1744390 | None:intergenic | 30.0% | |
| ACAGATTCATAAAGAAAGAC+AGG | + | chr2.3:1743303-1743322 | None:intergenic | 30.0% | |
| ACCAAAGAGATCTTATGAAA+AGG | + | chr2.3:1743827-1743846 | None:intergenic | 30.0% | |
| AGAATGAGATGAAGAAGTTA+GGG | + | chr2.3:1741707-1741726 | None:intergenic | 30.0% | |
| ATACAGATGACCATTTCAAA+TGG | - | chr2.3:1744522-1744541 | MS.gene86351:intron | 30.0% | |
| ATATATGTCACTGTCATAGA+GGG | + | chr2.3:1744108-1744127 | None:intergenic | 30.0% | |
| CCAAAGAGATCTTATGAAAA+GGG | + | chr2.3:1743826-1743845 | None:intergenic | 30.0% | |
| CTTGTAAGATTTGTCAATCA+TGG | - | chr2.3:1742230-1742249 | MS.gene86351:intron | 30.0% | |
| GAAATGTAGGCAATAGAAAA+TGG | - | chr2.3:1742395-1742414 | MS.gene86351:intron | 30.0% | |
| GATCTTATAATTAGGAATGG+AGG | + | chr2.3:1743783-1743802 | None:intergenic | 30.0% | |
| TACAGATGACCATTTCAAAT+GGG | - | chr2.3:1744523-1744542 | MS.gene86351:intron | 30.0% | |
| TACTATAACAGAAGGATTGT+TGG | - | chr2.3:1743247-1743266 | MS.gene86351:intron | 30.0% | |
| TATATATGTCACTGTCATAG+AGG | + | chr2.3:1744109-1744128 | None:intergenic | 30.0% | |
| TGAATTATATATGCAAGCTG+AGG | - | chr2.3:1742702-1742721 | MS.gene86351:intron | 30.0% | |
| TGGTGATAAGTACTAGAATT+TGG | - | chr2.3:1743343-1743362 | MS.gene86351:intron | 30.0% | |
| TTGGCAAAACTAATGTTGTT+TGG | - | chr2.3:1742869-1742888 | MS.gene86351:CDS | 30.0% | |
| TTGGGGTGAATAAAAAGATT+TGG | - | chr2.3:1742325-1742344 | MS.gene86351:intron | 30.0% | |
| TTGTACTAAATAGCATATGG+TGG | - | chr2.3:1742459-1742478 | MS.gene86351:intron | 30.0% | |
| ! | TGCGTAAAGATGTTTTATGA+AGG | - | chr2.3:1742952-1742971 | MS.gene86351:intron | 30.0% |
| !!! | TTTTGCATTACAGCTTTAAG+TGG | - | chr2.3:1744581-1744600 | MS.gene86351:CDS | 30.0% |
| ACTGGTTACCAAGATCAATT+TGG | - | chr2.3:1743521-1743540 | MS.gene86351:intron | 35.0% | |
| ATAAGAGTAGTTCGGATTCA+AGG | + | chr2.3:1742155-1742174 | None:intergenic | 35.0% | |
| ATAGCAACTATATTGGGGTT+AGG | + | chr2.3:1742428-1742447 | None:intergenic | 35.0% | |
| ATGCATAAAATTCCTCCATG+GGG | - | chr2.3:1744438-1744457 | MS.gene86351:CDS | 35.0% | |
| ATTATTGCCCTCAACTTTCA+CGG | - | chr2.3:1743600-1743619 | MS.gene86351:intron | 35.0% | |
| CAACTAATTCACACACACAT+AGG | + | chr2.3:1742772-1742791 | None:intergenic | 35.0% | |
| CATGCATAAAATTCCTCCAT+GGG | - | chr2.3:1744437-1744456 | MS.gene86351:CDS | 35.0% | |
| CTTATCACCAGATTGTGAAA+AGG | + | chr2.3:1743333-1743352 | None:intergenic | 35.0% | |
| GAGAATGAGATGAAGAAGTT+AGG | + | chr2.3:1741708-1741727 | None:intergenic | 35.0% | |
| GATTTGTCAATCATGGATAG+CGG | - | chr2.3:1742237-1742256 | MS.gene86351:intron | 35.0% | |
| GGCATAGGAAATTGACAAAA+TGG | + | chr2.3:1742134-1742153 | None:intergenic | 35.0% | |
| GTATACATTAAACAGCGACA+AGG | + | chr2.3:1743758-1743777 | None:intergenic | 35.0% | |
| TTCCAAAACTACAGTAATGG+AGG | - | chr2.3:1742373-1742392 | MS.gene86351:intron | 35.0% | |
| ! | AGTAAAGCACCCATTTGAAA+TGG | + | chr2.3:1744535-1744554 | None:intergenic | 35.0% |
| ! | ATGAAGAAGTTAGGGTTTTG+AGG | + | chr2.3:1741699-1741718 | None:intergenic | 35.0% |
| ! | CCCTTTTCATAAGATCTCTT+TGG | - | chr2.3:1743823-1743842 | MS.gene86351:intron | 35.0% |
| ! | GTGTGAATTAGTTGTTTCCA+AGG | - | chr2.3:1742778-1742797 | MS.gene86351:intron | 35.0% |
| ! | TACAGTAATGGAGGAAATGT+AGG | - | chr2.3:1742382-1742401 | MS.gene86351:intron | 35.0% |
| ! | TTCCTCCATTACTGTAGTTT+TGG | + | chr2.3:1742378-1742397 | None:intergenic | 35.0% |
| !! | TCCAAGGTTGATTTTGATGT+GGG | - | chr2.3:1742794-1742813 | MS.gene86351:intron | 35.0% |
| !! | TTCCAAGGTTGATTTTGATG+TGG | - | chr2.3:1742793-1742812 | MS.gene86351:intron | 35.0% |
| !!! | GAAATGAATGTTTTGGCACT+AGG | - | chr2.3:1744229-1744248 | MS.gene86351:intron | 35.0% |
| !!! | TCTGCACAAATTTTGGCTAA+AGG | + | chr2.3:1744299-1744318 | None:intergenic | 35.0% |
| AACCATGGCTGGAAAATCAA+GGG | - | chr2.3:1742987-1743006 | MS.gene86351:intron | 40.0% | |
| AACTATTCTTATCCCCATGG+AGG | + | chr2.3:1744453-1744472 | None:intergenic | 40.0% | |
| ACCCACATCAAAATCAACCT+TGG | + | chr2.3:1742798-1742817 | None:intergenic | 40.0% | |
| AGTATCCTAACTCGCTATAG+TGG | + | chr2.3:1742267-1742286 | None:intergenic | 40.0% | |
| AGTGAAGATACCTGATTGTG+TGG | + | chr2.3:1741785-1741804 | None:intergenic | 40.0% | |
| ATGAAGTCCGTGAAAGTTGA+GGG | + | chr2.3:1743610-1743629 | None:intergenic | 40.0% | |
| ATTCCCGTAATTTGGCCAAA+AGG | - | chr2.3:1744024-1744043 | MS.gene86351:intron | 40.0% | |
| CTATAAGCGCTATACCTCTA+TGG | + | chr2.3:1742516-1742535 | None:intergenic | 40.0% | |
| GAAAACCACTATAGCGAGTT+AGG | - | chr2.3:1742259-1742278 | MS.gene86351:intron | 40.0% | |
| GATGTAGTTCCAATTGCTAC+CGG | - | chr2.3:1741898-1741917 | MS.gene86351:intron | 40.0% | |
| GCATGCATAAAATTCCTCCA+TGG | - | chr2.3:1744436-1744455 | MS.gene86351:CDS | 40.0% | |
| GTAGGCAATAGAAAATGGAG+AGG | - | chr2.3:1742400-1742419 | MS.gene86351:intron | 40.0% | |
| TAACCATGGCTGGAAAATCA+AGG | - | chr2.3:1742986-1743005 | MS.gene86351:intron | 40.0% | |
| TAGTAAGACTTAACAACGGC+AGG | + | chr2.3:1743232-1743251 | None:intergenic | 40.0% | |
| TATGAAGTCCGTGAAAGTTG+AGG | + | chr2.3:1743611-1743630 | None:intergenic | 40.0% | |
| TCAACTTTCACGGACTTCAT+AGG | - | chr2.3:1743610-1743629 | MS.gene86351:intron | 40.0% | |
| TCCAACTATTCTTATCCCCA+TGG | + | chr2.3:1744456-1744475 | None:intergenic | 40.0% | |
| TCCATGGGGATAAGAATAGT+TGG | - | chr2.3:1744452-1744471 | MS.gene86351:CDS | 40.0% | |
| TGAAAATACTGTGCACACAC+TGG | + | chr2.3:1743466-1743485 | None:intergenic | 40.0% | |
| TGTCTGCTTTCGCTGTTTAT+AGG | - | chr2.3:1743201-1743220 | MS.gene86351:intron | 40.0% | |
| TTACTAACCTTCGTGCCAAA+AGG | + | chr2.3:1742659-1742678 | None:intergenic | 40.0% | |
| TTCCCGTAATTTGGCCAAAA+GGG | - | chr2.3:1744025-1744044 | MS.gene86351:intron | 40.0% | |
| ! | AGCATATGGTGGAACAATAG+TGG | - | chr2.3:1742470-1742489 | MS.gene86351:intron | 40.0% |
| ! | AGTGTGTGCACAGTATTTTC+AGG | - | chr2.3:1743465-1743484 | MS.gene86351:intron | 40.0% |
| ! | GATTTGGTTGTGATTGTAGC+TGG | - | chr2.3:1741853-1741872 | MS.gene86351:intron | 40.0% |
| ! | GTGCAAACCTTTTCACAATC+TGG | - | chr2.3:1743323-1743342 | MS.gene86351:intron | 40.0% |
| ! | GTGGAACAATAGTGGTTTGT+TGG | - | chr2.3:1742478-1742497 | MS.gene86351:intron | 40.0% |
| !! | AGCATGATGTTGTCTGGTTT+TGG | - | chr2.3:1743413-1743432 | MS.gene86351:intron | 40.0% |
| !! | GTTGATTTTGATGTGGGTTG+CGG | - | chr2.3:1742800-1742819 | MS.gene86351:intron | 40.0% |
| AATCTCCTCACGTTCATGAC+CGG | + | chr2.3:1741920-1741939 | None:intergenic | 45.0% | |
| AGGATGAGCATGATGTTGTC+TGG | - | chr2.3:1743407-1743426 | MS.gene86351:intron | 45.0% | |
| CCAAAAGGGTCCTATAGTTG+GGG | - | chr2.3:1744039-1744058 | MS.gene86351:intron | 45.0% | |
| CTACATCGATCCCCAACTAT+AGG | + | chr2.3:1744052-1744071 | None:intergenic | 45.0% | |
| CTTCAGGGTGGTCTATTTCA+AGG | + | chr2.3:1742634-1742653 | None:intergenic | 45.0% | |
| CTTGAAATAGACCACCCTGA+AGG | - | chr2.3:1742632-1742651 | MS.gene86351:intron | 45.0% | |
| GCATTCATGAGTGATGACAC+TGG | + | chr2.3:1744342-1744361 | None:intergenic | 45.0% | |
| GCCAAAAGGGTCCTATAGTT+GGG | - | chr2.3:1744038-1744057 | MS.gene86351:intron | 45.0% | |
| GGAATTCTGCTACACCATAG+AGG | - | chr2.3:1742499-1742518 | MS.gene86351:intron | 45.0% | |
| GGAGATTCAAGCTGATCTTG+AGG | - | chr2.3:1741933-1741952 | MS.gene86351:intron | 45.0% | |
| GGTTGTGATTGTAGCTGGTT+CGG | - | chr2.3:1741858-1741877 | MS.gene86351:intron | 45.0% | |
| GTAGTTCGGATTCAAGGCAT+AGG | + | chr2.3:1742149-1742168 | None:intergenic | 45.0% | |
| TGCACACACTGGACATTCAT+GGG | + | chr2.3:1743455-1743474 | None:intergenic | 45.0% | |
| TTCGGTGAAGAAGACAGTTG+AGG | - | chr2.3:1741876-1741895 | MS.gene86351:intron | 45.0% | |
| TTCTGCGTTACAGCTTGAAG+TGG | - | chr2.3:1744623-1744642 | MS.gene86351:CDS | 45.0% | |
| ! | ATCCCTTGATTTTCCAGCCA+TGG | + | chr2.3:1742992-1743011 | None:intergenic | 45.0% |
| ! | GACCCTTTTGGCCAAATTAC+GGG | + | chr2.3:1744030-1744049 | None:intergenic | 45.0% |
| ! | GGACCCTTTTGGCCAAATTA+CGG | + | chr2.3:1744031-1744050 | None:intergenic | 45.0% |
| !! | AGGTTGGTGAAGAGTAACCA+TGG | - | chr2.3:1742972-1742991 | MS.gene86351:intron | 45.0% |
| !! | TTTTGATGTGGGTTGCGGAA+TGG | - | chr2.3:1742805-1742824 | MS.gene86351:intron | 45.0% |
| !!! | GAAGTTAGGGTTTTGAGGTG+AGG | + | chr2.3:1741694-1741713 | None:intergenic | 45.0% |
| !!! | TGATGTTGTCTGGTTTTGGC+TGG | - | chr2.3:1743417-1743436 | MS.gene86351:intron | 45.0% |
| AGAAGGATTGTTGGATGCCC+CGG | - | chr2.3:1743256-1743275 | MS.gene86351:intron | 50.0% | |
| CGTTCATGACCGGTAGCAAT+TGG | + | chr2.3:1741910-1741929 | None:intergenic | 50.0% | |
| GCACACACTGGACATTCATG+GGG | + | chr2.3:1743454-1743473 | None:intergenic | 50.0% | |
| GCGTTACAGCTTGAAGTGGT+GGG | - | chr2.3:1744627-1744646 | MS.gene86351:CDS | 50.0% | |
| GGCCAAAAGGGTCCTATAGT+TGG | - | chr2.3:1744037-1744056 | MS.gene86351:intron | 50.0% | |
| GTGCACACACTGGACATTCA+TGG | + | chr2.3:1743456-1743475 | None:intergenic | 50.0% | |
| TCGTGCCAAAAGGACCTTCA+GGG | + | chr2.3:1742649-1742668 | None:intergenic | 50.0% | |
| TGCGTTACAGCTTGAAGTGG+TGG | - | chr2.3:1744626-1744645 | MS.gene86351:CDS | 50.0% | |
| TGGTGAAGAGTAACCATGGC+TGG | - | chr2.3:1742976-1742995 | MS.gene86351:intron | 50.0% | |
| TGTCAGCATACACTACACCG+TGG | + | chr2.3:1744408-1744427 | None:intergenic | 50.0% | |
| TTCGTGCCAAAAGGACCTTC+AGG | + | chr2.3:1742650-1742669 | None:intergenic | 50.0% | |
| ! | CCCCAACTATAGGACCCTTT+TGG | + | chr2.3:1744042-1744061 | None:intergenic | 50.0% |
| ! | TGAAGGTCCTTTTGGCACGA+AGG | - | chr2.3:1742649-1742668 | MS.gene86351:intron | 50.0% |
| !! | TGTGGGTTGCGGAATGGTTT+TGG | - | chr2.3:1742811-1742830 | MS.gene86351:intron | 50.0% |
| !!! | TGTTGTCTGGTTTTGGCTGG+AGG | - | chr2.3:1743420-1743439 | MS.gene86351:intron | 50.0% |
| ACACTTACCACCCTCACCAC+CGG | + | chr2.3:1743278-1743297 | None:intergenic | 55.0% | |
| TACCTGATTGTGTGGCGACG+TGG | + | chr2.3:1741777-1741796 | None:intergenic | 55.0% | |
| TGCCAAAAGGACCTTCAGGG+TGG | + | chr2.3:1742646-1742665 | None:intergenic | 55.0% | |
| TGCTACCGGTCATGAACGTG+AGG | - | chr2.3:1741912-1741931 | MS.gene86351:intron | 55.0% | |
| TGTCCATAAGGATCACCGCC+AGG | + | chr2.3:1744654-1744673 | None:intergenic | 55.0% | |
| ! | GACCACCCTGAAGGTCCTTT+TGG | - | chr2.3:1742641-1742660 | MS.gene86351:intron | 55.0% |
| !!! | GTCTGGTTTTGGCTGGAGGA+AGG | - | chr2.3:1743424-1743443 | MS.gene86351:intron | 55.0% |
| ACTTACCACCCTCACCACCG+GGG | + | chr2.3:1743276-1743295 | None:intergenic | 60.0% | |
| AGGATTGTTGGATGCCCCGG+TGG | - | chr2.3:1743259-1743278 | MS.gene86351:intron | 60.0% | |
| CACTTACCACCCTCACCACC+GGG | + | chr2.3:1743277-1743296 | None:intergenic | 60.0% | |
| CTGATTGTGTGGCGACGTGG+CGG | + | chr2.3:1741774-1741793 | None:intergenic | 60.0% | |
| GGACCTGGCGGTGATCCTTA+TGG | - | chr2.3:1744648-1744667 | MS.gene86351:CDS | 60.0% | |
| ! | CAGCTTGAAGTGGTGGGACC+TGG | - | chr2.3:1744633-1744652 | MS.gene86351:CDS | 60.0% |
| ! | CTTGAAGTGGTGGGACCTGG+CGG | - | chr2.3:1744636-1744655 | MS.gene86351:CDS | 60.0% |
| CGCCACGTCGCCACACAATC+AGG | - | chr2.3:1741772-1741791 | MS.gene86351:intron | 65.0% | |
| GTTGGATGCCCCGGTGGTGA+GGG | - | chr2.3:1743265-1743284 | MS.gene86351:intron | 65.0% | |
| TGTTGGATGCCCCGGTGGTG+AGG | - | chr2.3:1743264-1743283 | MS.gene86351:intron | 65.0% | |
| CATCCTCGATCCGCCGTCGC+CGG | - | chr2.3:1741727-1741746 | MS.gene86351:intron | 70.0% | |
| GAATCGGAGACCGGCGACGG+CGG | + | chr2.3:1741740-1741759 | None:intergenic | 70.0% | |
| GAGGCCGGCGAATCGGAGAC+CGG | + | chr2.3:1741749-1741768 | None:intergenic | 70.0% | |
| GGCGAATCGGAGACCGGCGA+CGG | + | chr2.3:1741743-1741762 | None:intergenic | 70.0% | |
| ! | GTCGCCGGTCTCCGATTCGC+CGG | - | chr2.3:1741742-1741761 | MS.gene86351:intron | 70.0% |
| AGACCGGCGACGGCGGATCG+AGG | + | chr2.3:1741733-1741752 | None:intergenic | 75.0% | |
| GGATGCCCCGGTGGTGAGGG+TGG | - | chr2.3:1743268-1743287 | MS.gene86351:intron | 75.0% | |
| GGCGGCTGAGGCCGGCGAAT+CGG | + | chr2.3:1741756-1741775 | None:intergenic | 75.0% | |
| GTGTGGCGACGTGGCGGCTG+AGG | + | chr2.3:1741768-1741787 | None:intergenic | 75.0% | |
| ! | GGCGACGTGGCGGCTGAGGC+CGG | + | chr2.3:1741764-1741783 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 1741667 | 1744680 | 1741667 | ID=MS.gene86351 |
| chr2.3 | mRNA | 1741667 | 1744680 | 1741667 | ID=MS.gene86351.t1;Parent=MS.gene86351 |
| chr2.3 | exon | 1744554 | 1744680 | 1744554 | ID=MS.gene86351.t1.exon1;Parent=MS.gene86351.t1 |
| chr2.3 | CDS | 1744554 | 1744680 | 1744554 | ID=cds.MS.gene86351.t1;Parent=MS.gene86351.t1 |
| chr2.3 | exon | 1744393 | 1744475 | 1744393 | ID=MS.gene86351.t1.exon2;Parent=MS.gene86351.t1 |
| chr2.3 | CDS | 1744393 | 1744475 | 1744393 | ID=cds.MS.gene86351.t1;Parent=MS.gene86351.t1 |
| chr2.3 | exon | 1743677 | 1743727 | 1743677 | ID=MS.gene86351.t1.exon3;Parent=MS.gene86351.t1 |
| chr2.3 | CDS | 1743677 | 1743727 | 1743677 | ID=cds.MS.gene86351.t1;Parent=MS.gene86351.t1 |
| chr2.3 | exon | 1743058 | 1743124 | 1743058 | ID=MS.gene86351.t1.exon4;Parent=MS.gene86351.t1 |
| chr2.3 | CDS | 1743058 | 1743124 | 1743058 | ID=cds.MS.gene86351.t1;Parent=MS.gene86351.t1 |
| chr2.3 | exon | 1742861 | 1742940 | 1742861 | ID=MS.gene86351.t1.exon5;Parent=MS.gene86351.t1 |
| chr2.3 | CDS | 1742861 | 1742940 | 1742861 | ID=cds.MS.gene86351.t1;Parent=MS.gene86351.t1 |
| chr2.3 | exon | 1741667 | 1741711 | 1741667 | ID=MS.gene86351.t1.exon6;Parent=MS.gene86351.t1 |
| chr2.3 | CDS | 1741667 | 1741711 | 1741667 | ID=cds.MS.gene86351.t1;Parent=MS.gene86351.t1 |
| Gene Sequence |
| Protein sequence |
