Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059819.t1 | KEH38737.1 | 92 | 910 | 71 | 2 | 1 | 908 | 24 | 933 | 0.00E+00 | 1668.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059819.t1 | A0A072VAA8 | 92.0 | 910 | 71 | 2 | 1 | 908 | 24 | 933 | 0.0e+00 | 1668.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051026 | MS.gene059819 | 0.811841 | 5.72E-51 | -1.69E-46 |
| MS.gene059819 | MS.gene68181 | 0.820844 | 5.53E-53 | -1.69E-46 |
| MS.gene059819 | MS.gene92272 | 0.806931 | 6.47E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059819.t1 | MTR_2g079310 | 92.857 | 910 | 63 | 2 | 1 | 908 | 24 | 933 | 0.0 | 1678 |
| MS.gene059819.t1 | MTR_2g079300 | 63.795 | 917 | 280 | 18 | 16 | 909 | 24 | 911 | 0.0 | 1058 |
| MS.gene059819.t1 | MTR_2g013640 | 39.355 | 930 | 489 | 29 | 15 | 901 | 35 | 932 | 0.0 | 602 |
| MS.gene059819.t1 | MTR_4g011610 | 24.888 | 671 | 408 | 24 | 285 | 880 | 362 | 1011 | 1.24e-39 | 159 |
| MS.gene059819.t1 | MTR_4g071100 | 88.462 | 52 | 6 | 0 | 628 | 679 | 1 | 52 | 8.36e-26 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059819.t1 | AT4G21700 | 37.045 | 934 | 517 | 18 | 7 | 898 | 43 | 947 | 0.0 | 584 |
| MS.gene059819.t1 | AT1G52780 | 30.244 | 410 | 239 | 15 | 537 | 905 | 641 | 1044 | 4.64e-43 | 170 |
Find 146 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAACATCATTACAGAAAT+TGG | 0.174944 | 2.4:-18453848 | None:intergenic |
| AAGTGATGTTTCTGAGAAAA+AGG | 0.198537 | 2.4:+18453931 | MS.gene059819:CDS |
| ATAGCATAATTGGACAAATT+TGG | 0.207848 | 2.4:+18454377 | MS.gene059819:CDS |
| AGTGACTATTGGATTGAAAA+AGG | 0.229449 | 2.4:+18454172 | MS.gene059819:CDS |
| CGATAACTATAGTTTGCTTT+TGG | 0.230875 | 2.4:-18453869 | None:intergenic |
| CACTGAATTCCGGTTATATA+AGG | 0.242557 | 2.4:-18454791 | None:intergenic |
| CTTTCAAGCTTGAAGGGTTT+TGG | 0.259324 | 2.4:+18453633 | MS.gene059819:CDS |
| CGCATGCCTATGATCTTTAC+AGG | 0.265337 | 2.4:+18455715 | MS.gene059819:CDS |
| GTTATCATCTTGAAGTAGTT+TGG | 0.269424 | 2.4:-18454421 | None:intergenic |
| TTGGGATATTGTCATTCCTT+TGG | 0.282244 | 2.4:+18455812 | MS.gene059819:CDS |
| TGGGATATTGTCATTCCTTT+GGG | 0.308996 | 2.4:+18455813 | MS.gene059819:CDS |
| CAGCAATCCAGAGGCCGTTC+TGG | 0.315792 | 2.4:-18455449 | None:intergenic |
| GAGATGAAGGGAAGCACATT+AGG | 0.318248 | 2.4:-18455204 | None:intergenic |
| TAAGGTTGAATTAGAAAGTA+TGG | 0.318807 | 2.4:-18454773 | None:intergenic |
| AATGGAAGCTACGACATTAA+AGG | 0.322650 | 2.4:+18454988 | MS.gene059819:CDS |
| AGCAAACTATAGTTATCGTT+TGG | 0.344477 | 2.4:+18453874 | MS.gene059819:CDS |
| TTTCAAATAAAAGTGACTAT+TGG | 0.348512 | 2.4:+18454161 | MS.gene059819:CDS |
| CTAATTCAACCTTATATAAC+CGG | 0.351661 | 2.4:+18454782 | MS.gene059819:CDS |
| AGCTGTTTGGAGAATGGATA+TGG | 0.353167 | 2.4:+18455104 | MS.gene059819:CDS |
| ATCTACTTGCAGCAACGTTT+TGG | 0.356533 | 2.4:+18455858 | MS.gene059819:CDS |
| GTGGAATTTGAAATGGTAAC+AGG | 0.366199 | 2.4:-18454688 | None:intergenic |
| GAAGTTTCAGTTTCCATCAT+TGG | 0.366609 | 2.4:+18454957 | MS.gene059819:CDS |
| ACTTGATCACCAACAGATAA+AGG | 0.369401 | 2.4:-18454655 | None:intergenic |
| ACATGATAGTAAACTGTGTT+TGG | 0.372736 | 2.4:-18453542 | None:intergenic |
| TGAAGAGTATTTGTTGTTGA+AGG | 0.373226 | 2.4:-18453435 | None:intergenic |
| ATCTTACGGTGGTTTGGTAT+TGG | 0.388222 | 2.4:+18455587 | MS.gene059819:CDS |
| ACAAATTAAACACTGAATTC+CGG | 0.391199 | 2.4:-18454801 | None:intergenic |
| AACATCACTAGTTTGATTAG+TGG | 0.393229 | 2.4:+18453770 | MS.gene059819:CDS |
| TTTGTAACTTTCAAGCTTGA+AGG | 0.395443 | 2.4:+18453626 | MS.gene059819:CDS |
| CCTTTCAAAGACATCATATA+TGG | 0.395688 | 2.4:-18454088 | None:intergenic |
| AACTTTGTGTTTGGATATGT+TGG | 0.396638 | 2.4:+18455318 | MS.gene059819:CDS |
| AAAGTTTGTATGGTTGGAAC+AGG | 0.402221 | 2.4:+18453671 | MS.gene059819:CDS |
| CATGAAATCTTACGGTGGTT+TGG | 0.402506 | 2.4:+18455581 | MS.gene059819:CDS |
| ATCTTCTGGAAAAGTTTGTA+TGG | 0.406589 | 2.4:+18453661 | MS.gene059819:CDS |
| GATTGAAATTCCCTTCAGTT+TGG | 0.408596 | 2.4:+18454338 | MS.gene059819:CDS |
| TTCTTGACAACCTTGTGTGC+TGG | 0.413293 | 2.4:-18454529 | None:intergenic |
| CACCAAGAGGGAAAGAGTTA+TGG | 0.414969 | 2.4:-18453358 | None:intergenic |
| GTAGTTGCTTGCCATTTCAT+TGG | 0.417487 | 2.4:+18454259 | MS.gene059819:CDS |
| ATCCATAACTCTTTCCCTCT+TGG | 0.418294 | 2.4:+18453356 | MS.gene059819:CDS |
| AAAACCATAGGAGTTAATAT+TGG | 0.419361 | 2.4:-18454626 | None:intergenic |
| GGAATTAGTTATTCACAAAC+AGG | 0.420602 | 2.4:+18453692 | MS.gene059819:CDS |
| TGACGCTGACTTCGAGAACT+TGG | 0.422253 | 2.4:-18453590 | None:intergenic |
| TCTGGAAAAGTTTGTATGGT+TGG | 0.423754 | 2.4:+18453665 | MS.gene059819:CDS |
| GGCAATTGATCACTCATTAT+AGG | 0.425370 | 2.4:-18454067 | None:intergenic |
| ACGAGTCCTGTAAAGATCAT+AGG | 0.426060 | 2.4:-18455721 | None:intergenic |
| GTCTGTTGTGGAATTTGAAA+TGG | 0.428495 | 2.4:-18454695 | None:intergenic |
| CATCATGAAAATTGAGATGA+AGG | 0.429482 | 2.4:-18455217 | None:intergenic |
| AAACAGCGATAGAAGCTGTT+TGG | 0.433120 | 2.4:+18455091 | MS.gene059819:CDS |
| AGAGAGTTTGAGTTCTGAAA+AGG | 0.435977 | 2.4:+18453799 | MS.gene059819:CDS |
| GAGTCCAATATTAACTCCTA+TGG | 0.444229 | 2.4:+18454622 | MS.gene059819:CDS |
| TCCGTCTTCTTCAACTAACT+TGG | 0.449556 | 2.4:+18455403 | MS.gene059819:CDS |
| ATGAAAGCCAGAACGGCCTC+TGG | 0.451976 | 2.4:+18455442 | MS.gene059819:CDS |
| ATATCATAAGAATAAACATC+TGG | 0.452325 | 2.4:-18454571 | None:intergenic |
| AGAACAATGATCTTTGTAAG+AGG | 0.452920 | 2.4:-18453297 | None:intergenic |
| TTAGAAATTTCGAAGATGAC+AGG | 0.454008 | 2.4:+18454446 | MS.gene059819:CDS |
| ATTTCATGATGCCAATGAAA+TGG | 0.456483 | 2.4:-18454270 | None:intergenic |
| ATCAGAAGCTGAAGTGCAAA+TGG | 0.460410 | 2.4:+18455950 | MS.gene059819:CDS |
| ACTCATGAGTGTACTCTAAT+CGG | 0.461660 | 2.4:-18454021 | None:intergenic |
| AGAGGGTTGTGATGAAGAAA+AGG | 0.464589 | 2.4:-18453279 | None:intergenic |
| GTTTCAACAGAATTCATCTT+GGG | 0.468650 | 2.4:+18455554 | MS.gene059819:CDS |
| TACGGTGGTTTGGTATTGGA+TGG | 0.472128 | 2.4:+18455591 | MS.gene059819:CDS |
| AATCCGAAAACTACGTTGGT+AGG | 0.475253 | 2.4:+18454199 | MS.gene059819:CDS |
| TGATATGAGATTTGATATGT+TGG | 0.477720 | 2.4:+18454588 | MS.gene059819:CDS |
| CATTAGGGTGTTTCTTGACA+TGG | 0.479152 | 2.4:-18455188 | None:intergenic |
| ATGATGTCAATTCTCACAAT+GGG | 0.479267 | 2.4:+18455234 | MS.gene059819:CDS |
| AGCAGTTCTGAATGAAATAG+TGG | 0.482519 | 2.4:-18453519 | None:intergenic |
| TTTGATCCTTTGAATCTATG+AGG | 0.483046 | 2.4:-18455897 | None:intergenic |
| AGATGAAGGGAAGCACATTA+GGG | 0.483338 | 2.4:-18455203 | None:intergenic |
| CGTTGGTAGGGGAAGGTTGG+TGG | 0.487939 | 2.4:+18454212 | MS.gene059819:CDS |
| GCCAAGACGGATGCCATTCA+AGG | 0.488453 | 2.4:-18454296 | None:intergenic |
| AGGATCAAAGGTATATGAAA+AGG | 0.489279 | 2.4:+18455911 | MS.gene059819:CDS |
| AGTTTCAACAGAATTCATCT+TGG | 0.491537 | 2.4:+18455553 | MS.gene059819:CDS |
| CATGATGTCAATTCTCACAA+TGG | 0.491712 | 2.4:+18455233 | MS.gene059819:CDS |
| GGAAAGAGTTATGGATGATG+AGG | 0.492236 | 2.4:-18453349 | None:intergenic |
| TCCTTGAATGGCATCCGTCT+TGG | 0.496853 | 2.4:+18454295 | MS.gene059819:CDS |
| CCTCTTGGTGATCAATACTC+AGG | 0.497390 | 2.4:+18453371 | MS.gene059819:CDS |
| ACAGGAACCTTGTGTATGAT+TGG | 0.498917 | 2.4:+18454871 | MS.gene059819:CDS |
| TTCTTCATTTGCAATTTACT+CGG | 0.501178 | 2.4:+18455068 | MS.gene059819:CDS |
| ATTTCTTAACTCTTTCAAGC+TGG | 0.501659 | 2.4:-18454501 | None:intergenic |
| CGCAATCTTAACTCAAAGGC+TGG | 0.504135 | 2.4:+18454898 | MS.gene059819:CDS |
| GGGAGTTGACTCTTTGATGA+TGG | 0.505808 | 2.4:-18453321 | None:intergenic |
| GAGAGTTTGAGTTCTGAAAA+GGG | 0.509784 | 2.4:+18453800 | MS.gene059819:CDS |
| AATTATGCTCAACTCGGCGA+TGG | 0.510910 | 2.4:+18455744 | MS.gene059819:CDS |
| ATCATGAAATCGTCCTTGAA+TGG | 0.513058 | 2.4:+18454283 | MS.gene059819:CDS |
| ATCCGAAAACTACGTTGGTA+GGG | 0.513232 | 2.4:+18454200 | MS.gene059819:CDS |
| AGAAAACAAGCATAGGTTGA+AGG | 0.515198 | 2.4:+18454126 | MS.gene059819:CDS |
| CATCCGTCTTGGCGATTGCT+CGG | 0.515903 | 2.4:+18454306 | MS.gene059819:CDS |
| CAGAAGGTACTTATGATTCA+AGG | 0.516498 | 2.4:+18454848 | MS.gene059819:CDS |
| CCTCTGGATTGCTGAGAGAA+AGG | 0.518991 | 2.4:+18455458 | MS.gene059819:CDS |
| TTGTAACTTTCAAGCTTGAA+GGG | 0.520372 | 2.4:+18453627 | MS.gene059819:CDS |
| GATAGAAGCTGTTTGGAGAA+TGG | 0.520712 | 2.4:+18455098 | MS.gene059819:CDS |
| CTACGTTGGTAGGGGAAGGT+TGG | 0.520779 | 2.4:+18454209 | MS.gene059819:CDS |
| AAGTTAATGAAATAGCTGTA+AGG | 0.521660 | 2.4:+18455349 | MS.gene059819:CDS |
| CAATACTCAGGTTACTTCAC+AGG | 0.523091 | 2.4:+18453383 | MS.gene059819:CDS |
| ACAAGGTTGTCAAGAACAAA+GGG | 0.531404 | 2.4:+18454536 | MS.gene059819:CDS |
| GCATAGGTTGAAGGTTATGA+TGG | 0.533152 | 2.4:+18454135 | MS.gene059819:CDS |
| TGGGAGAACATGAAATCTTA+CGG | 0.533397 | 2.4:+18455573 | MS.gene059819:CDS |
| AATAATCCAGCTGCATACAA+AGG | 0.536085 | 2.4:-18455498 | None:intergenic |
| ATAATCCAGCTGCATACAAA+GGG | 0.540543 | 2.4:-18455497 | None:intergenic |
| TTGTGTTTGGATATGTTGGA+TGG | 0.542000 | 2.4:+18455322 | MS.gene059819:CDS |
| CATGTAAGCAACTTTAGCTA+TGG | 0.542750 | 2.4:+18453560 | MS.gene059819:CDS |
| AATGGATATGGAGATTATCA+TGG | 0.548482 | 2.4:+18455116 | MS.gene059819:CDS |
| GAACAATGATCTTTGTAAGA+GGG | 0.548742 | 2.4:-18453296 | None:intergenic |
| AATTTCGAAGATGACAGGGT+TGG | 0.552719 | 2.4:+18454451 | MS.gene059819:CDS |
| TCCGAAAACTACGTTGGTAG+GGG | 0.555710 | 2.4:+18454201 | MS.gene059819:CDS |
| GGTACTTATGATTCAAGGAC+AGG | 0.556525 | 2.4:+18454853 | MS.gene059819:CDS |
| CACAAGGTTGTCAAGAACAA+AGG | 0.565650 | 2.4:+18454535 | MS.gene059819:CDS |
| TTCCACAACAGACACTCCTA+TGG | 0.566678 | 2.4:+18454705 | MS.gene059819:CDS |
| GATATTGTCATTCCTTTGGG+AGG | 0.567628 | 2.4:+18455816 | MS.gene059819:CDS |
| TTGCCGCAATCTTAACTCAA+AGG | 0.572037 | 2.4:+18454894 | MS.gene059819:CDS |
| TCATAGATTCAAAGGATCAA+AGG | 0.572929 | 2.4:+18455899 | MS.gene059819:CDS |
| GTTCTGCCTCATAGATTCAA+AGG | 0.574597 | 2.4:+18455891 | MS.gene059819:CDS |
| GTTGGTAGGGGAAGGTTGGT+GGG | 0.583510 | 2.4:+18454213 | MS.gene059819:CDS |
| GAAATCATGTCCAGCACACA+AGG | 0.589576 | 2.4:+18454519 | MS.gene059819:CDS |
| ATCATGAAAATTGAGATGAA+GGG | 0.595539 | 2.4:-18455216 | None:intergenic |
| AGCTGTAAGGATTATAACAA+TGG | 0.597737 | 2.4:+18455362 | MS.gene059819:CDS |
| TAGAAATTTCGAAGATGACA+GGG | 0.600967 | 2.4:+18454447 | MS.gene059819:CDS |
| GCTTCTGATTCAGTCACCAC+AGG | 0.601246 | 2.4:-18455936 | None:intergenic |
| CTGAGTATTGATCACCAAGA+GGG | 0.601282 | 2.4:-18453370 | None:intergenic |
| CTTCTAATAGCTCTTGAGAG+TGG | 0.601771 | 2.4:-18453995 | None:intergenic |
| GTTCTCAAGAAAACAAGCAT+AGG | 0.605390 | 2.4:+18454119 | MS.gene059819:CDS |
| AGAGTGAAGATTTCAGCAGA+AGG | 0.606308 | 2.4:+18454832 | MS.gene059819:CDS |
| TTACCGAGCAATCGCCAAGA+CGG | 0.607355 | 2.4:-18454309 | None:intergenic |
| CACCATAGGAGTGTCTGTTG+TGG | 0.607425 | 2.4:-18454707 | None:intergenic |
| AAAACTACGTTGGTAGGGGA+AGG | 0.612097 | 2.4:+18454205 | MS.gene059819:CDS |
| GCTTCGAAATTGAGAACAAG+CGG | 0.617144 | 2.4:-18455267 | None:intergenic |
| AACAAGTTTAGAAATACTTG+TGG | 0.618557 | 2.4:-18455624 | None:intergenic |
| CCATATATGATGTCTTTGAA+AGG | 0.621501 | 2.4:+18454088 | MS.gene059819:CDS |
| CCATTGTTGAACATCACCAT+AGG | 0.630256 | 2.4:-18454721 | None:intergenic |
| AAGACTAATGAAAGCCAGAA+CGG | 0.634141 | 2.4:+18455435 | MS.gene059819:CDS |
| TTTCAATCCGAAAACTACGT+TGG | 0.634421 | 2.4:+18454195 | MS.gene059819:CDS |
| ACCAAGTTAGTTGAAGAAGA+CGG | 0.644238 | 2.4:-18455404 | None:intergenic |
| CAGCCTTTGAGTTAAGATTG+CGG | 0.648649 | 2.4:-18454897 | None:intergenic |
| TACTCAGGTTACTTCACAGG+AGG | 0.658618 | 2.4:+18453386 | MS.gene059819:CDS |
| GCAAATAAGATACCTCCCAA+AGG | 0.662067 | 2.4:-18455828 | None:intergenic |
| ACTCGTAATTATGCTCAACT+CGG | 0.677828 | 2.4:+18455738 | MS.gene059819:CDS |
| CTGTAAAGATCATAGGCATG+CGG | 0.680972 | 2.4:-18455714 | None:intergenic |
| CCTTTCTCTCAGCAATCCAG+AGG | 0.683130 | 2.4:-18455458 | None:intergenic |
| CCTATGGTGATGTTCAACAA+TGG | 0.683459 | 2.4:+18454721 | MS.gene059819:CDS |
| ATTCAAAAGAAAGAAGAACA+TGG | 0.686447 | 2.4:-18453240 | None:intergenic |
| TGGAACACAGTTACGCTCTG+TGG | 0.689056 | 2.4:+18454918 | MS.gene059819:CDS |
| GGTATATGAAAAGGTGCCTG+TGG | 0.700967 | 2.4:+18455920 | MS.gene059819:CDS |
| CCTGAGTATTGATCACCAAG+AGG | 0.701913 | 2.4:-18453371 | None:intergenic |
| GCGGCAACCAATCATACACA+AGG | 0.708091 | 2.4:-18454878 | None:intergenic |
| GAGAACATGAAATCTTACGG+TGG | 0.722259 | 2.4:+18455576 | MS.gene059819:CDS |
| AAGGAAGTATCAAAAGCACG+CGG | 0.756530 | 2.4:+18455007 | MS.gene059819:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATACTAATAGCATAAT+TGG | + | chr2.4:18454367-18454386 | MS.gene059819:CDS | 15.0% |
| !! | ATATCATAAGAATAAACATC+TGG | - | chr2.4:18454574-18454593 | None:intergenic | 20.0% |
| !! | TTTCAAATAAAAGTGACTAT+TGG | + | chr2.4:18454161-18454180 | MS.gene059819:CDS | 20.0% |
| !!! | TTTTTGCTGTTATAATTTTG+AGG | - | chr2.4:18455300-18455319 | None:intergenic | 20.0% |
| ! | AAAACCATAGGAGTTAATAT+TGG | - | chr2.4:18454629-18454648 | None:intergenic | 25.0% |
| ! | AACAAGTTTAGAAATACTTG+TGG | - | chr2.4:18455627-18455646 | None:intergenic | 25.0% |
| ! | AAGTTAATGAAATAGCTGTA+AGG | + | chr2.4:18455349-18455368 | MS.gene059819:CDS | 25.0% |
| ! | ACAAATTAAACACTGAATTC+CGG | - | chr2.4:18454804-18454823 | None:intergenic | 25.0% |
| ! | ATAGCATAATTGGACAAATT+TGG | + | chr2.4:18454377-18454396 | MS.gene059819:CDS | 25.0% |
| ! | ATCATGAAAATTGAGATGAA+GGG | - | chr2.4:18455219-18455238 | None:intergenic | 25.0% |
| ! | CTAATTCAACCTTATATAAC+CGG | + | chr2.4:18454782-18454801 | MS.gene059819:CDS | 25.0% |
| ! | GAACAAAAACTTGATGAATA+TGG | - | chr2.4:18453971-18453990 | None:intergenic | 25.0% |
| ! | TAAGGTTGAATTAGAAAGTA+TGG | - | chr2.4:18454776-18454795 | None:intergenic | 25.0% |
| ! | TGATATGAGATTTGATATGT+TGG | + | chr2.4:18454588-18454607 | MS.gene059819:CDS | 25.0% |
| ! | TTCTTCATTTGCAATTTACT+CGG | + | chr2.4:18455068-18455087 | MS.gene059819:CDS | 25.0% |
| !! | AGATTTTTACTCAACTACTT+GGG | + | chr2.4:18455794-18455813 | MS.gene059819:CDS | 25.0% |
| !! | CTTTCATGTTCATTTTACTT+TGG | + | chr2.4:18455669-18455688 | MS.gene059819:CDS | 25.0% |
| !! | TTTTTATTGACCAAACTGAA+GGG | - | chr2.4:18454351-18454370 | None:intergenic | 25.0% |
| !!! | TCTAAACTTTTGAAGTAAAG+AGG | - | chr2.4:18455045-18455064 | None:intergenic | 25.0% |
| !!! | TTTTTTATTGACCAAACTGA+AGG | - | chr2.4:18454352-18454371 | None:intergenic | 25.0% |
| AACAGCAAAAACTTTGTGTT+TGG | + | chr2.4:18455309-18455328 | MS.gene059819:CDS | 30.0% | |
| AACTTTGTGTTTGGATATGT+TGG | + | chr2.4:18455318-18455337 | MS.gene059819:CDS | 30.0% | |
| AATGGATATGGAGATTATCA+TGG | + | chr2.4:18455116-18455135 | MS.gene059819:CDS | 30.0% | |
| ACATGATAGTAAACTGTGTT+TGG | - | chr2.4:18453545-18453564 | None:intergenic | 30.0% | |
| AGAACAATGATCTTTGTAAG+AGG | - | chr2.4:18453300-18453319 | None:intergenic | 30.0% | |
| AGCAAACTATAGTTATCGTT+TGG | + | chr2.4:18453874-18453893 | MS.gene059819:CDS | 30.0% | |
| AGCTGTAAGGATTATAACAA+TGG | + | chr2.4:18455362-18455381 | MS.gene059819:CDS | 30.0% | |
| AGTGACTATTGGATTGAAAA+AGG | + | chr2.4:18454172-18454191 | MS.gene059819:CDS | 30.0% | |
| AGTTTCAACAGAATTCATCT+TGG | + | chr2.4:18455553-18455572 | MS.gene059819:CDS | 30.0% | |
| ATGATGTCAATTCTCACAAT+GGG | + | chr2.4:18455234-18455253 | MS.gene059819:CDS | 30.0% | |
| ATTTCATGATGCCAATGAAA+TGG | - | chr2.4:18454273-18454292 | None:intergenic | 30.0% | |
| ATTTCTTAACTCTTTCAAGC+TGG | - | chr2.4:18454504-18454523 | None:intergenic | 30.0% | |
| CATCATGAAAATTGAGATGA+AGG | - | chr2.4:18455220-18455239 | None:intergenic | 30.0% | |
| CCATATATGATGTCTTTGAA+AGG | + | chr2.4:18454088-18454107 | MS.gene059819:CDS | 30.0% | |
| CCTTTCAAAGACATCATATA+TGG | - | chr2.4:18454091-18454110 | None:intergenic | 30.0% | |
| GAACAATGATCTTTGTAAGA+GGG | - | chr2.4:18453299-18453318 | None:intergenic | 30.0% | |
| GGAAACATCATTACAGAAAT+TGG | - | chr2.4:18453851-18453870 | None:intergenic | 30.0% | |
| GGAATTAGTTATTCACAAAC+AGG | + | chr2.4:18453692-18453711 | MS.gene059819:CDS | 30.0% | |
| GTAAAAATCTGCATTAGGAT+TGG | - | chr2.4:18455784-18455803 | None:intergenic | 30.0% | |
| GTTATCATCTTGAAGTAGTT+TGG | - | chr2.4:18454424-18454443 | None:intergenic | 30.0% | |
| GTTGAGTAAAAATCTGCATT+AGG | - | chr2.4:18455789-18455808 | None:intergenic | 30.0% | |
| GTTTCAACAGAATTCATCTT+GGG | + | chr2.4:18455554-18455573 | MS.gene059819:CDS | 30.0% | |
| TAGAAATTTCGAAGATGACA+GGG | + | chr2.4:18454447-18454466 | MS.gene059819:CDS | 30.0% | |
| TCATAGATTCAAAGGATCAA+AGG | + | chr2.4:18455899-18455918 | MS.gene059819:CDS | 30.0% | |
| TTAGAAATTTCGAAGATGAC+AGG | + | chr2.4:18454446-18454465 | MS.gene059819:CDS | 30.0% | |
| TTGTAACTTTCAAGCTTGAA+GGG | + | chr2.4:18453627-18453646 | MS.gene059819:CDS | 30.0% | |
| TTTGATCCTTTGAATCTATG+AGG | - | chr2.4:18455900-18455919 | None:intergenic | 30.0% | |
| TTTGTAACTTTCAAGCTTGA+AGG | + | chr2.4:18453626-18453645 | MS.gene059819:CDS | 30.0% | |
| ! | AACATCACTAGTTTGATTAG+TGG | + | chr2.4:18453770-18453789 | MS.gene059819:CDS | 30.0% |
| ! | AAGTGATGTTTCTGAGAAAA+AGG | + | chr2.4:18453931-18453950 | MS.gene059819:CDS | 30.0% |
| ! | AGGATCAAAGGTATATGAAA+AGG | + | chr2.4:18455911-18455930 | MS.gene059819:CDS | 30.0% |
| ! | AGTGATGTTTCTGAGAAAAA+GGG | + | chr2.4:18453932-18453951 | MS.gene059819:CDS | 30.0% |
| ! | ATCTTCTGGAAAAGTTTGTA+TGG | + | chr2.4:18453661-18453680 | MS.gene059819:CDS | 30.0% |
| ! | CAGATTTTTACTCAACTACT+TGG | + | chr2.4:18455793-18455812 | MS.gene059819:CDS | 30.0% |
| ! | CATGCATTTTTATGTGTCTA+AGG | - | chr2.4:18453466-18453485 | None:intergenic | 30.0% |
| ! | TTATGGATGATGAGGTTTTT+GGG | - | chr2.4:18453344-18453363 | None:intergenic | 30.0% |
| !! | TGAAGAGTATTTGTTGTTGA+AGG | - | chr2.4:18453438-18453457 | None:intergenic | 30.0% |
| !!! | CGATAACTATAGTTTGCTTT+TGG | - | chr2.4:18453872-18453891 | None:intergenic | 30.0% |
| AAAGTTTGTATGGTTGGAAC+AGG | + | chr2.4:18453671-18453690 | MS.gene059819:CDS | 35.0% | |
| AAGACTAATGAAAGCCAGAA+CGG | + | chr2.4:18455435-18455454 | MS.gene059819:CDS | 35.0% | |
| AATAATCCAGCTGCATACAA+AGG | - | chr2.4:18455501-18455520 | None:intergenic | 35.0% | |
| AATGGAAGCTACGACATTAA+AGG | + | chr2.4:18454988-18455007 | MS.gene059819:CDS | 35.0% | |
| ACAAGGTTGTCAAGAACAAA+GGG | + | chr2.4:18454536-18454555 | MS.gene059819:CDS | 35.0% | |
| ACCAAGTTAGTTGAAGAAGA+CGG | - | chr2.4:18455407-18455426 | None:intergenic | 35.0% | |
| ACTCATGAGTGTACTCTAAT+CGG | - | chr2.4:18454024-18454043 | None:intergenic | 35.0% | |
| ACTCGTAATTATGCTCAACT+CGG | + | chr2.4:18455738-18455757 | MS.gene059819:CDS | 35.0% | |
| ACTTGATCACCAACAGATAA+AGG | - | chr2.4:18454658-18454677 | None:intergenic | 35.0% | |
| ATAATCCAGCTGCATACAAA+GGG | - | chr2.4:18455500-18455519 | None:intergenic | 35.0% | |
| ATCATGAAATCGTCCTTGAA+TGG | + | chr2.4:18454283-18454302 | MS.gene059819:CDS | 35.0% | |
| CACTGAATTCCGGTTATATA+AGG | - | chr2.4:18454794-18454813 | None:intergenic | 35.0% | |
| CATGATGTCAATTCTCACAA+TGG | + | chr2.4:18455233-18455252 | MS.gene059819:CDS | 35.0% | |
| CATGTAAGCAACTTTAGCTA+TGG | + | chr2.4:18453560-18453579 | MS.gene059819:CDS | 35.0% | |
| CCATCATTGGATGCAAAAAA+TGG | + | chr2.4:18454970-18454989 | MS.gene059819:CDS | 35.0% | |
| GAAGTTTCAGTTTCCATCAT+TGG | + | chr2.4:18454957-18454976 | MS.gene059819:CDS | 35.0% | |
| GAGTCCAATATTAACTCCTA+TGG | + | chr2.4:18454622-18454641 | MS.gene059819:CDS | 35.0% | |
| GATTGAAATTCCCTTCAGTT+TGG | + | chr2.4:18454338-18454357 | MS.gene059819:CDS | 35.0% | |
| GGCAATTGATCACTCATTAT+AGG | - | chr2.4:18454070-18454089 | None:intergenic | 35.0% | |
| GTCTGTTGTGGAATTTGAAA+TGG | - | chr2.4:18454698-18454717 | None:intergenic | 35.0% | |
| GTTCTCAAGAAAACAAGCAT+AGG | + | chr2.4:18454119-18454138 | MS.gene059819:CDS | 35.0% | |
| TAAAGGAGCTGAAAAACCAT+AGG | - | chr2.4:18454641-18454660 | None:intergenic | 35.0% | |
| TCTGGAAAAGTTTGTATGGT+TGG | + | chr2.4:18453665-18453684 | MS.gene059819:CDS | 35.0% | |
| TGGGAGAACATGAAATCTTA+CGG | + | chr2.4:18455573-18455592 | MS.gene059819:CDS | 35.0% | |
| TGGGATATTGTCATTCCTTT+GGG | + | chr2.4:18455813-18455832 | MS.gene059819:CDS | 35.0% | |
| TTGGGATATTGTCATTCCTT+TGG | + | chr2.4:18455812-18455831 | MS.gene059819:CDS | 35.0% | |
| TTGTGTTTGGATATGTTGGA+TGG | + | chr2.4:18455322-18455341 | MS.gene059819:CDS | 35.0% | |
| TTTCAATCCGAAAACTACGT+TGG | + | chr2.4:18454195-18454214 | MS.gene059819:CDS | 35.0% | |
| ! | AGAAAACAAGCATAGGTTGA+AGG | + | chr2.4:18454126-18454145 | MS.gene059819:CDS | 35.0% |
| ! | GTGGAATTTGAAATGGTAAC+AGG | - | chr2.4:18454691-18454710 | None:intergenic | 35.0% |
| ! | GTTATGGATGATGAGGTTTT+TGG | - | chr2.4:18453345-18453364 | None:intergenic | 35.0% |
| ! | TTTTCAGCTCCTTTATCTGT+TGG | + | chr2.4:18454646-18454665 | MS.gene059819:CDS | 35.0% |
| !! | AGAGAGTTTGAGTTCTGAAA+AGG | + | chr2.4:18453799-18453818 | MS.gene059819:CDS | 35.0% |
| !! | AGCAGTTCTGAATGAAATAG+TGG | - | chr2.4:18453522-18453541 | None:intergenic | 35.0% |
| !! | CAGAAGGTACTTATGATTCA+AGG | + | chr2.4:18454848-18454867 | MS.gene059819:CDS | 35.0% |
| !! | GAGAGTTTGAGTTCTGAAAA+GGG | + | chr2.4:18453800-18453819 | MS.gene059819:CDS | 35.0% |
| !!! | CCATTTTTTGCATCCAATGA+TGG | - | chr2.4:18454973-18454992 | None:intergenic | 35.0% |
| AAACAGCGATAGAAGCTGTT+TGG | + | chr2.4:18455091-18455110 | MS.gene059819:CDS | 40.0% | |
| AATCCGAAAACTACGTTGGT+AGG | + | chr2.4:18454199-18454218 | MS.gene059819:CDS | 40.0% | |
| AATTTCGAAGATGACAGGGT+TGG | + | chr2.4:18454451-18454470 | MS.gene059819:CDS | 40.0% | |
| ACAGGAACCTTGTGTATGAT+TGG | + | chr2.4:18454871-18454890 | MS.gene059819:CDS | 40.0% | |
| ACGAGTCCTGTAAAGATCAT+AGG | - | chr2.4:18455724-18455743 | None:intergenic | 40.0% | |
| AGAGGGTTGTGATGAAGAAA+AGG | - | chr2.4:18453282-18453301 | None:intergenic | 40.0% | |
| AGAGTGAAGATTTCAGCAGA+AGG | + | chr2.4:18454832-18454851 | MS.gene059819:CDS | 40.0% | |
| AGCTGTTTGGAGAATGGATA+TGG | + | chr2.4:18455104-18455123 | MS.gene059819:CDS | 40.0% | |
| ATCAGAAGCTGAAGTGCAAA+TGG | + | chr2.4:18455950-18455969 | MS.gene059819:CDS | 40.0% | |
| ATCCATAACTCTTTCCCTCT+TGG | + | chr2.4:18453356-18453375 | MS.gene059819:CDS | 40.0% | |
| ATCCGAAAACTACGTTGGTA+GGG | + | chr2.4:18454200-18454219 | MS.gene059819:CDS | 40.0% | |
| CAATACTCAGGTTACTTCAC+AGG | + | chr2.4:18453383-18453402 | MS.gene059819:CDS | 40.0% | |
| CACAAGGTTGTCAAGAACAA+AGG | + | chr2.4:18454535-18454554 | MS.gene059819:CDS | 40.0% | |
| CATGAAATCTTACGGTGGTT+TGG | + | chr2.4:18455581-18455600 | MS.gene059819:CDS | 40.0% | |
| CCATTGTTGAACATCACCAT+AGG | - | chr2.4:18454724-18454743 | None:intergenic | 40.0% | |
| CTGTAAAGATCATAGGCATG+CGG | - | chr2.4:18455717-18455736 | None:intergenic | 40.0% | |
| CTTCTAATAGCTCTTGAGAG+TGG | - | chr2.4:18453998-18454017 | None:intergenic | 40.0% | |
| GAGAACATGAAATCTTACGG+TGG | + | chr2.4:18455576-18455595 | MS.gene059819:CDS | 40.0% | |
| GATAGAAGCTGTTTGGAGAA+TGG | + | chr2.4:18455098-18455117 | MS.gene059819:CDS | 40.0% | |
| GATATTGTCATTCCTTTGGG+AGG | + | chr2.4:18455816-18455835 | MS.gene059819:CDS | 40.0% | |
| GCAAATAAGATACCTCCCAA+AGG | - | chr2.4:18455831-18455850 | None:intergenic | 40.0% | |
| GCTTCGAAATTGAGAACAAG+CGG | - | chr2.4:18455270-18455289 | None:intergenic | 40.0% | |
| GGAAAGAGTTATGGATGATG+AGG | - | chr2.4:18453352-18453371 | None:intergenic | 40.0% | |
| GGTACTTATGATTCAAGGAC+AGG | + | chr2.4:18454853-18454872 | MS.gene059819:CDS | 40.0% | |
| GTTCTGCCTCATAGATTCAA+AGG | + | chr2.4:18455891-18455910 | MS.gene059819:CDS | 40.0% | |
| TCCGTCTTCTTCAACTAACT+TGG | + | chr2.4:18455403-18455422 | MS.gene059819:CDS | 40.0% | |
| TTGCCGCAATCTTAACTCAA+AGG | + | chr2.4:18454894-18454913 | MS.gene059819:CDS | 40.0% | |
| ! | ACTCTAGCATGTGTTTTCGT+CGG | + | chr2.4:18455153-18455172 | MS.gene059819:CDS | 40.0% |
| ! | AGATGAAGGGAAGCACATTA+GGG | - | chr2.4:18455206-18455225 | None:intergenic | 40.0% |
| ! | ATCTACTTGCAGCAACGTTT+TGG | + | chr2.4:18455858-18455877 | MS.gene059819:CDS | 40.0% |
| ! | ATTTTCCCTTTGTATGCAGC+TGG | + | chr2.4:18455492-18455511 | MS.gene059819:CDS | 40.0% |
| ! | CAGCCTTTGAGTTAAGATTG+CGG | - | chr2.4:18454900-18454919 | None:intergenic | 40.0% |
| ! | CATTAGGGTGTTTCTTGACA+TGG | - | chr2.4:18455191-18455210 | None:intergenic | 40.0% |
| ! | CCTATGGTGATGTTCAACAA+TGG | + | chr2.4:18454721-18454740 | MS.gene059819:CDS | 40.0% |
| ! | CTTTCAAGCTTGAAGGGTTT+TGG | + | chr2.4:18453633-18453652 | MS.gene059819:CDS | 40.0% |
| ! | GCATAGGTTGAAGGTTATGA+TGG | + | chr2.4:18454135-18454154 | MS.gene059819:CDS | 40.0% |
| ! | GTAGTTGCTTGCCATTTCAT+TGG | + | chr2.4:18454259-18454278 | MS.gene059819:CDS | 40.0% |
| !! | AAGGAAGTATCAAAAGCACG+CGG | + | chr2.4:18455007-18455026 | MS.gene059819:CDS | 40.0% |
| !! | ATCTTACGGTGGTTTGGTAT+TGG | + | chr2.4:18455587-18455606 | MS.gene059819:CDS | 40.0% |
| !! | CTGAGTATTGATCACCAAGA+GGG | - | chr2.4:18453373-18453392 | None:intergenic | 40.0% |
| !! | GGGTTTTGGTCAAAATCTTC+TGG | + | chr2.4:18453647-18453666 | MS.gene059819:CDS | 40.0% |
| AATTATGCTCAACTCGGCGA+TGG | + | chr2.4:18455744-18455763 | MS.gene059819:CDS | 45.0% | |
| CACCAAGAGGGAAAGAGTTA+TGG | - | chr2.4:18453361-18453380 | None:intergenic | 45.0% | |
| CGCAATCTTAACTCAAAGGC+TGG | + | chr2.4:18454898-18454917 | MS.gene059819:CDS | 45.0% | |
| CGCATGCCTATGATCTTTAC+AGG | + | chr2.4:18455715-18455734 | MS.gene059819:CDS | 45.0% | |
| GAAATCATGTCCAGCACACA+AGG | + | chr2.4:18454519-18454538 | MS.gene059819:CDS | 45.0% | |
| TACTCAGGTTACTTCACAGG+AGG | + | chr2.4:18453386-18453405 | MS.gene059819:CDS | 45.0% | |
| TTCCACAACAGACACTCCTA+TGG | + | chr2.4:18454705-18454724 | MS.gene059819:CDS | 45.0% | |
| TTCTTGACAACCTTGTGTGC+TGG | - | chr2.4:18454532-18454551 | None:intergenic | 45.0% | |
| ! | AAAACTACGTTGGTAGGGGA+AGG | + | chr2.4:18454205-18454224 | MS.gene059819:CDS | 45.0% |
| ! | CCTCTTGGTGATCAATACTC+AGG | + | chr2.4:18453371-18453390 | MS.gene059819:CDS | 45.0% |
| ! | GAGATGAAGGGAAGCACATT+AGG | - | chr2.4:18455207-18455226 | None:intergenic | 45.0% |
| ! | GGGAGTTGACTCTTTGATGA+TGG | - | chr2.4:18453324-18453343 | None:intergenic | 45.0% |
| ! | TCCCCTACCAACGTAGTTTT+CGG | - | chr2.4:18454205-18454224 | None:intergenic | 45.0% |
| ! | TCCGAAAACTACGTTGGTAG+GGG | + | chr2.4:18454201-18454220 | MS.gene059819:CDS | 45.0% |
| !! | CCTGAGTATTGATCACCAAG+AGG | - | chr2.4:18453374-18453393 | None:intergenic | 45.0% |
| !! | GGTATATGAAAAGGTGCCTG+TGG | + | chr2.4:18455920-18455939 | MS.gene059819:CDS | 45.0% |
| !! | TACGGTGGTTTGGTATTGGA+TGG | + | chr2.4:18455591-18455610 | MS.gene059819:CDS | 45.0% |
| CCTCTGGATTGCTGAGAGAA+AGG | + | chr2.4:18455458-18455477 | MS.gene059819:CDS | 50.0% | |
| CCTTTCTCTCAGCAATCCAG+AGG | - | chr2.4:18455461-18455480 | None:intergenic | 50.0% | |
| GCGGCAACCAATCATACACA+AGG | - | chr2.4:18454881-18454900 | None:intergenic | 50.0% | |
| GCTTCTGATTCAGTCACCAC+AGG | - | chr2.4:18455939-18455958 | None:intergenic | 50.0% | |
| TCCTTGAATGGCATCCGTCT+TGG | + | chr2.4:18454295-18454314 | MS.gene059819:CDS | 50.0% | |
| TGGAACACAGTTACGCTCTG+TGG | + | chr2.4:18454918-18454937 | MS.gene059819:CDS | 50.0% | |
| TTACCGAGCAATCGCCAAGA+CGG | - | chr2.4:18454312-18454331 | None:intergenic | 50.0% | |
| !! | CACCATAGGAGTGTCTGTTG+TGG | - | chr2.4:18454710-18454729 | None:intergenic | 50.0% |
| !! | TGACGCTGACTTCGAGAACT+TGG | - | chr2.4:18453593-18453612 | None:intergenic | 50.0% |
| ATGAAAGCCAGAACGGCCTC+TGG | + | chr2.4:18455442-18455461 | MS.gene059819:CDS | 55.0% | |
| CATCCGTCTTGGCGATTGCT+CGG | + | chr2.4:18454306-18454325 | MS.gene059819:CDS | 55.0% | |
| GCCAAGACGGATGCCATTCA+AGG | - | chr2.4:18454299-18454318 | None:intergenic | 55.0% | |
| ! | CTACGTTGGTAGGGGAAGGT+TGG | + | chr2.4:18454209-18454228 | MS.gene059819:CDS | 55.0% |
| ! | GTTGGTAGGGGAAGGTTGGT+GGG | + | chr2.4:18454213-18454232 | MS.gene059819:CDS | 55.0% |
| CAGCAATCCAGAGGCCGTTC+TGG | - | chr2.4:18455452-18455471 | None:intergenic | 60.0% | |
| ! | CGTTGGTAGGGGAAGGTTGG+TGG | + | chr2.4:18454212-18454231 | MS.gene059819:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 18453242 | 18455977 | 18453242 | ID=MS.gene059819 |
| chr2.4 | mRNA | 18453242 | 18455977 | 18453242 | ID=MS.gene059819.t1;Parent=MS.gene059819 |
| chr2.4 | exon | 18453242 | 18455977 | 18453242 | ID=MS.gene059819.t1.exon1;Parent=MS.gene059819.t1 |
| chr2.4 | CDS | 18453242 | 18455977 | 18453242 | ID=cds.MS.gene059819.t1;Parent=MS.gene059819.t1 |
| Gene Sequence |
| Protein sequence |
