Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060095.t1 | KEH27221.1 | 88.2 | 702 | 79 | 3 | 1 | 700 | 1 | 700 | 0.00E+00 | 1252.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060095.t1 | Q7Y228 | 61.4 | 700 | 245 | 6 | 1 | 699 | 1 | 676 | 3.6e-243 | 842.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060095.t1 | A0A072UCN4 | 88.2 | 702 | 79 | 3 | 1 | 700 | 1 | 700 | 0.0e+00 | 1252.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056920 | MS.gene060095 | 0.807476 | 4.96E-50 | -1.69E-46 |
| MS.gene060095 | MS.gene065608 | 0.932099 | 1.41E-94 | -1.69E-46 |
| MS.gene060095 | MS.gene26296 | 0.835365 | 1.75E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060095.t1 | MTR_6g088825 | 88.177 | 702 | 79 | 3 | 1 | 700 | 1 | 700 | 0.0 | 1275 |
| MS.gene060095.t1 | MTR_6g088825 | 89.649 | 599 | 58 | 3 | 1 | 597 | 1 | 597 | 0.0 | 1095 |
| MS.gene060095.t1 | MTR_6g088825 | 89.324 | 562 | 57 | 2 | 1 | 561 | 1 | 560 | 0.0 | 1033 |
| MS.gene060095.t1 | MTR_7g107100 | 42.128 | 705 | 366 | 14 | 1 | 699 | 19 | 687 | 0.0 | 549 |
| MS.gene060095.t1 | MTR_7g107100 | 43.297 | 649 | 331 | 11 | 1 | 645 | 19 | 634 | 2.15e-179 | 526 |
| MS.gene060095.t1 | MTR_7g107100 | 40.993 | 705 | 336 | 14 | 1 | 699 | 19 | 649 | 2.24e-175 | 516 |
| MS.gene060095.t1 | MTR_7g107100 | 43.594 | 601 | 304 | 10 | 1 | 597 | 19 | 588 | 1.51e-165 | 488 |
| MS.gene060095.t1 | MTR_7g107100 | 44.583 | 563 | 278 | 9 | 1 | 559 | 19 | 551 | 1.06e-158 | 469 |
| MS.gene060095.t1 | MTR_6g088830 | 73.684 | 57 | 15 | 0 | 644 | 700 | 1 | 57 | 7.20e-23 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060095.t1 | AT5G19740 | 64.042 | 673 | 217 | 6 | 28 | 699 | 28 | 676 | 0.0 | 879 |
| MS.gene060095.t1 | AT3G54720 | 39.832 | 713 | 378 | 14 | 1 | 699 | 25 | 700 | 2.52e-169 | 502 |
| MS.gene060095.t1 | AT4G07670 | 61.423 | 267 | 71 | 5 | 143 | 400 | 5 | 248 | 3.70e-108 | 330 |
| MS.gene060095.t1 | AT4G07670 | 64.407 | 236 | 61 | 3 | 165 | 400 | 1 | 213 | 6.12e-102 | 312 |
Find 169 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATCATTCTCTGGAATTT+TGG | 0.043549 | 6.2:+68789129 | MS.gene060095:CDS |
| CACAAAGCATTTATGATTCT+TGG | 0.126841 | 6.2:+68779523 | MS.gene060095:CDS |
| CATAATATGATTGTTCTTCT+AGG | 0.148067 | 6.2:-68778691 | None:intergenic |
| GCAACAATTCAAAATGTTAT+TGG | 0.207332 | 6.2:+68778179 | MS.gene060095:CDS |
| ATGATAATAGCTAGATTTAT+TGG | 0.215640 | 6.2:-68775630 | None:intergenic |
| TCCTTTGATACCTTCATTGC+CGG | 0.287316 | 6.2:+68777377 | MS.gene060095:CDS |
| AGCACCAAGGAACGTGAAAA+AGG | 0.292965 | 6.2:-68775839 | None:intergenic |
| TCATATAGTGAATGGTATAC+TGG | 0.305163 | 6.2:-68784883 | None:intergenic |
| GACATTATCTGATAAAGATT+TGG | 0.309819 | 6.2:-68775666 | None:intergenic |
| CCATCTAAACATACTGTATA+TGG | 0.310892 | 6.2:+68789103 | MS.gene060095:CDS |
| GAAAACAGCCGCAAGTGTTT+GGG | 0.313133 | 6.2:+68786129 | MS.gene060095:intron |
| GTTTGTAGATTTGTCATCTT+AGG | 0.313737 | 6.2:+68778334 | MS.gene060095:intron |
| AGATGTGGCTATGGCTAATA+AGG | 0.313772 | 6.2:-68775582 | None:intergenic |
| GGGAGTGTTTATAGTGGTAT+TGG | 0.325942 | 6.2:+68777273 | MS.gene060095:CDS |
| TCTCACCACATACCTTTATC+TGG | 0.327185 | 6.2:-68786438 | None:intergenic |
| CTTTATCTGGTCATTTATCT+TGG | 0.329159 | 6.2:-68786425 | None:intergenic |
| GAACAATCATATTATGCAAT+TGG | 0.330047 | 6.2:+68778698 | MS.gene060095:CDS |
| CACTATATGATGATTTCATT+TGG | 0.335549 | 6.2:+68784896 | MS.gene060095:CDS |
| CCAAAATTCCAGAGAATGAT+TGG | 0.339181 | 6.2:-68789129 | None:intergenic |
| TATGATTCTTGGACTAGTTC+TGG | 0.340849 | 6.2:+68779534 | MS.gene060095:CDS |
| GTAAAGATGCGCCGATCTAT+AGG | 0.345179 | 6.2:+68777472 | MS.gene060095:CDS |
| AGGGAACCACTTTGCTTCAC+TGG | 0.345856 | 6.2:-68777214 | None:intergenic |
| ATGCTTTGTGATGAGTTATC+TGG | 0.354769 | 6.2:-68779510 | None:intergenic |
| GGAACTCTTGCATACCTATC+AGG | 0.358162 | 6.2:-68778224 | None:intergenic |
| CATAGGGATGCATGGACATT+TGG | 0.367762 | 6.2:+68778361 | MS.gene060095:CDS |
| GGAAAACAGCCGCAAGTGTT+TGG | 0.368175 | 6.2:+68786128 | MS.gene060095:intron |
| AGTGCTGCAGTGCCACTATT+AGG | 0.369332 | 6.2:-68778394 | None:intergenic |
| GCTTCCTTGTCTTAAATTGA+AGG | 0.379368 | 6.2:-68775891 | None:intergenic |
| TCATCTATCACATCAGAATA+AGG | 0.379472 | 6.2:-68775926 | None:intergenic |
| GCATATAAAGAAGGTGCTAT+TGG | 0.391962 | 6.2:+68777153 | MS.gene060095:CDS |
| ATAAGCTGCAGCTTCATTGT+TGG | 0.393312 | 6.2:-68775747 | None:intergenic |
| ATAGAGAAGTTCTTGCTTCA+AGG | 0.394836 | 6.2:+68779277 | MS.gene060095:CDS |
| ATCTAAAAGTTTGGAAGGTT+AGG | 0.397386 | 6.2:+68780122 | MS.gene060095:intron |
| ATGTTTCAAAGGCATATTGC+AGG | 0.399316 | 6.2:+68784940 | MS.gene060095:CDS |
| CAAGATAAATGACCAGATAA+AGG | 0.401012 | 6.2:+68786426 | MS.gene060095:CDS |
| CACCAAGTGGTGTTCAAGTT+GGG | 0.406469 | 6.2:+68777253 | MS.gene060095:CDS |
| TGTGAGAATTTCAAGGTTGT+TGG | 0.406769 | 6.2:-68775696 | None:intergenic |
| AAGGAGCAGAAGAGCCTGAT+AGG | 0.407473 | 6.2:+68778210 | MS.gene060095:CDS |
| ATACCTTCATTGCCGGTGTC+AGG | 0.411693 | 6.2:+68777384 | MS.gene060095:CDS |
| CTAGCCCAACCAGGTGTTGT+AGG | 0.421364 | 6.2:-68777300 | None:intergenic |
| AATGCCTTGGTATAAGCATT+TGG | 0.423050 | 6.2:+68786966 | MS.gene060095:CDS |
| GTCCTGTTGCTGAGGATGAT+TGG | 0.423947 | 6.2:+68777442 | MS.gene060095:CDS |
| CCAGCAGCTGACATAGCCTT+TGG | 0.425147 | 6.2:+68780191 | MS.gene060095:CDS |
| CTATTTAAAACTCAAAGAAA+TGG | 0.426789 | 6.2:+68777059 | MS.gene060095:CDS |
| TAACTGAGATTGAGAATTCC+TGG | 0.427807 | 6.2:-68777507 | None:intergenic |
| TCTGTGGTTTATGTTAACTA+TGG | 0.428511 | 6.2:+68777024 | MS.gene060095:CDS |
| AACAATCATATTATGCAATT+GGG | 0.429688 | 6.2:+68778699 | MS.gene060095:CDS |
| TGCCAATCATCCTCAGCAAC+AGG | 0.433085 | 6.2:-68777444 | None:intergenic |
| GTATAGTACAACACGAAGTT+TGG | 0.433322 | 6.2:+68789197 | MS.gene060095:CDS |
| TATGGCTCCCAATCATTCTC+TGG | 0.438418 | 6.2:+68789121 | MS.gene060095:CDS |
| CTTAAATTGAAGGTAAAAGA+AGG | 0.442989 | 6.2:-68775881 | None:intergenic |
| CCATATACAGTATGTTTAGA+TGG | 0.446484 | 6.2:-68789103 | None:intergenic |
| TAAAGATGCGCCGATCTATA+GGG | 0.455143 | 6.2:+68777473 | MS.gene060095:CDS |
| TAGAGAAGTTCTTGCTTCAA+GGG | 0.456455 | 6.2:+68779278 | MS.gene060095:CDS |
| GACTCAGCAGTAGGTGGACC+AGG | 0.460938 | 6.2:+68779321 | MS.gene060095:CDS |
| ATTCCCACATGCTGCAGAAA+AGG | 0.461893 | 6.2:-68780167 | None:intergenic |
| CCACCAAGTGGTGTTCAAGT+TGG | 0.462478 | 6.2:+68777252 | MS.gene060095:CDS |
| TCCAGATAGGATCAACAGAA+TGG | 0.463877 | 6.2:+68779244 | MS.gene060095:intron |
| CACACTTCGTTAGTTCTGTC+TGG | 0.464912 | 6.2:+68789241 | MS.gene060095:CDS |
| TTAATTCTCTCACTCTAAAG+TGG | 0.467511 | 6.2:-68786888 | None:intergenic |
| TAATAGCTAGATTTATTGGT+TGG | 0.472125 | 6.2:-68775626 | None:intergenic |
| TATTTAAAACTCAAAGAAAT+GGG | 0.477311 | 6.2:+68777060 | MS.gene060095:CDS |
| AGATCCTACAACACCTGGTT+GGG | 0.477383 | 6.2:+68777296 | MS.gene060095:CDS |
| GCTGACATAGCCTTTGGAAA+AGG | 0.479250 | 6.2:+68780197 | MS.gene060095:CDS |
| GGAGCAGTTGATCCTAATAG+TGG | 0.486786 | 6.2:+68778382 | MS.gene060095:CDS |
| TTCCATGCATATGCCAAGTC+AGG | 0.487962 | 6.2:+68775962 | MS.gene060095:CDS |
| TGAAATCATCATATAGTGAA+TGG | 0.489328 | 6.2:-68784891 | None:intergenic |
| CAAGTTGGGAGTGTTTATAG+TGG | 0.489445 | 6.2:+68777267 | MS.gene060095:CDS |
| TGTTGCTGAGGATGATTGGC+AGG | 0.489872 | 6.2:+68777446 | MS.gene060095:CDS |
| AGGTACTGCCATTGGTTCTG+TGG | 0.490029 | 6.2:+68777008 | MS.gene060095:intron |
| CTCCCAACTTGAACACCACT+TGG | 0.490591 | 6.2:-68777255 | None:intergenic |
| ATTCAGGTAGCTCAAAGACT+AGG | 0.495643 | 6.2:+68778643 | MS.gene060095:intron |
| CCAAAGGCTATGTCAGCTGC+TGG | 0.496497 | 6.2:-68780191 | None:intergenic |
| AATGTTATTGGTGTGATTGA+AGG | 0.497237 | 6.2:+68778191 | MS.gene060095:CDS |
| GCAATATGCCTTTGAAACAT+AGG | 0.499231 | 6.2:-68784937 | None:intergenic |
| TTGTCATCTTAGGCAACCAT+AGG | 0.500477 | 6.2:+68778344 | MS.gene060095:CDS |
| TGGTTTATGTTAACTATGGA+AGG | 0.504096 | 6.2:+68777028 | MS.gene060095:CDS |
| CACAGACAAAGATGGTCTCC+TGG | 0.508039 | 6.2:+68786942 | MS.gene060095:CDS |
| TTGGCATATGCATGGAATGT+AGG | 0.509240 | 6.2:-68775956 | None:intergenic |
| AGCATATGATAAATAATCAA+AGG | 0.509525 | 6.2:-68786191 | None:intergenic |
| TTAAGACAAGGAAGCTATGA+AGG | 0.509719 | 6.2:+68775899 | MS.gene060095:CDS |
| TAGTTCTGGTAGTTCTCCTC+AGG | 0.510582 | 6.2:+68779548 | MS.gene060095:CDS |
| GTATGCAAGAGCAACATCAT+AGG | 0.511906 | 6.2:-68775816 | None:intergenic |
| TCACCTGACACCGGCAATGA+AGG | 0.513336 | 6.2:-68777387 | None:intergenic |
| CAAGTAAAGGATGGAGAACA+TGG | 0.514703 | 6.2:+68786857 | MS.gene060095:CDS |
| CCAGATAGGATCAACAGAAT+GGG | 0.514757 | 6.2:+68779245 | MS.gene060095:intron |
| AGATTGAGAATTCCTGGTCC+TGG | 0.516398 | 6.2:-68777501 | None:intergenic |
| TCCTTGATGTACTTATACAT+AGG | 0.516452 | 6.2:-68786385 | None:intergenic |
| CAAAATTCCAGAGAATGATT+GGG | 0.518005 | 6.2:-68789128 | None:intergenic |
| TTGGTGATCCTATGTTTCAA+AGG | 0.518214 | 6.2:+68784929 | MS.gene060095:CDS |
| TGATTATTTATCATATGCTA+AGG | 0.519301 | 6.2:+68786195 | MS.gene060095:CDS |
| CAAATGTCCATGCATCCCTA+TGG | 0.520417 | 6.2:-68778360 | None:intergenic |
| CATTTATCTAAAAGTTTGGA+AGG | 0.520971 | 6.2:+68780117 | MS.gene060095:intron |
| TGGCATATGCATGGAATGTA+GGG | 0.522299 | 6.2:-68775955 | None:intergenic |
| CAACATCATAGGATGTTACA+TGG | 0.523286 | 6.2:-68775805 | None:intergenic |
| CATATAGTGAATGGTATACT+GGG | 0.524417 | 6.2:-68784882 | None:intergenic |
| CTAGGGAAGCTTCAGAAAAG+AGG | 0.527071 | 6.2:+68778661 | MS.gene060095:CDS |
| GAAAAGATAATTAGATCAAT+CGG | 0.528268 | 6.2:+68777417 | MS.gene060095:CDS |
| TCATAGGATGTTACATGGGT+TGG | 0.529776 | 6.2:-68775800 | None:intergenic |
| TTGCCGGTGTCAGGTGAAGA+TGG | 0.529876 | 6.2:+68777393 | MS.gene060095:CDS |
| TTTGGGGTCTAGTAGCACTT+TGG | 0.540009 | 6.2:+68786146 | MS.gene060095:CDS |
| CCAACTTGAACACCACTTGG+TGG | 0.542131 | 6.2:-68777252 | None:intergenic |
| TATAGGGTTGGACCAGGACC+AGG | 0.544466 | 6.2:+68777489 | MS.gene060095:CDS |
| GCTTATACCAAGGCATTCCC+AGG | 0.544771 | 6.2:-68786960 | None:intergenic |
| TTGATCAATTCTTCAAGCTG+TGG | 0.545209 | 6.2:-68779363 | None:intergenic |
| TCAAAGGATGAAGTGGAGAA+AGG | 0.546301 | 6.2:+68777345 | MS.gene060095:CDS |
| AAGTTTGGAAGGTTAGGAAG+TGG | 0.547356 | 6.2:+68780128 | MS.gene060095:intron |
| TAACAAGTAAGATGTGGCTA+TGG | 0.547529 | 6.2:-68775591 | None:intergenic |
| ACCTACGTACTGCAGAATCA+TGG | 0.549807 | 6.2:+68789173 | MS.gene060095:CDS |
| GAGATCCTACAACACCTGGT+TGG | 0.552676 | 6.2:+68777295 | MS.gene060095:CDS |
| TTCAGGTAGCTCAAAGACTA+GGG | 0.552792 | 6.2:+68778644 | MS.gene060095:intron |
| GCATATGATAAATAATCAAA+GGG | 0.553631 | 6.2:-68786190 | None:intergenic |
| AAATAGAAGCAAGTAAAGGA+TGG | 0.554901 | 6.2:+68786848 | MS.gene060095:CDS |
| TAGGGAAGCTTCAGAAAAGA+GGG | 0.556894 | 6.2:+68778662 | MS.gene060095:CDS |
| AACATAAACCACAGAACCAA+TGG | 0.557063 | 6.2:-68777016 | None:intergenic |
| GTCTATGTGTGAGAATTTCA+AGG | 0.560924 | 6.2:-68775703 | None:intergenic |
| TTATGTTAACTATGGAAGGG+TGG | 0.562220 | 6.2:+68777032 | MS.gene060095:CDS |
| AAGGATGAAGTGGAGAAAGG+AGG | 0.563177 | 6.2:+68777348 | MS.gene060095:CDS |
| ATGGTCTCCTGGGAATGCCT+TGG | 0.564137 | 6.2:+68786953 | MS.gene060095:CDS |
| CAGGAAATAGAAGCAAGTAA+AGG | 0.568178 | 6.2:+68786844 | MS.gene060095:intron |
| AATACATCAGGTACTGCCAT+TGG | 0.568315 | 6.2:+68777000 | MS.gene060095:intron |
| CGTGCATTCACAGACAAAGA+TGG | 0.568743 | 6.2:+68786934 | MS.gene060095:CDS |
| TTAAATGTTGACTCAGCAGT+AGG | 0.568992 | 6.2:+68779312 | MS.gene060095:CDS |
| ATTAAATGATAGATTGATGA+TGG | 0.573269 | 6.2:+68786906 | MS.gene060095:CDS |
| GAGACTATCAAAGGATGAAG+TGG | 0.573287 | 6.2:+68777338 | MS.gene060095:CDS |
| ATCATATGCTAAGGAGCTCA+AGG | 0.574525 | 6.2:+68786204 | MS.gene060095:CDS |
| ACACATAGACCACACATAGC+AGG | 0.575904 | 6.2:+68775716 | MS.gene060095:CDS |
| TACCTGACTTGGCATATGCA+TGG | 0.579781 | 6.2:-68775964 | None:intergenic |
| CCGATCTATAGGGTTGGACC+AGG | 0.581609 | 6.2:+68777483 | MS.gene060095:CDS |
| ACAGTTGTATTAGCAAAGCA+TGG | 0.581680 | 6.2:+68777099 | MS.gene060095:CDS |
| AGCACTTTGGCTAGCAGATG+AGG | 0.582633 | 6.2:+68786159 | MS.gene060095:CDS |
| CCTGGTCCAACCCTATAGAT+CGG | 0.584136 | 6.2:-68777483 | None:intergenic |
| TAGGCAACCATAGGGATGCA+TGG | 0.591293 | 6.2:+68778353 | MS.gene060095:CDS |
| TGTTAACTATGGAAGGGTGG+AGG | 0.591508 | 6.2:+68777035 | MS.gene060095:CDS |
| TGTCATCTTAGGCAACCATA+GGG | 0.593560 | 6.2:+68778345 | MS.gene060095:CDS |
| TCCTATGTATAAGTACATCA+AGG | 0.598253 | 6.2:+68786384 | MS.gene060095:CDS |
| ACAGACAAAGATGGTCTCCT+GGG | 0.599025 | 6.2:+68786943 | MS.gene060095:CDS |
| ACCGGCAATGAAGGTATCAA+AGG | 0.599646 | 6.2:-68777378 | None:intergenic |
| GATGCGCCGATCTATAGGGT+TGG | 0.603435 | 6.2:+68777477 | MS.gene060095:CDS |
| AAAACAGCCGCAAGTGTTTG+GGG | 0.606372 | 6.2:+68786130 | MS.gene060095:intron |
| GCTTCAGAACCTGCTATGTG+TGG | 0.609499 | 6.2:-68775725 | None:intergenic |
| ATTATGCAATTGGGATGCTG+AGG | 0.609804 | 6.2:+68778708 | MS.gene060095:CDS |
| CTTACCAAATGCTTATACCA+AGG | 0.615567 | 6.2:-68786970 | None:intergenic |
| TAGAAGTAACAAGTAAGATG+TGG | 0.625011 | 6.2:-68775597 | None:intergenic |
| GTAGCACTAGCATGAAACCC+TGG | 0.625804 | 6.2:-68779339 | None:intergenic |
| TGGCACTGCAGCACTACTTG+AGG | 0.628018 | 6.2:+68778402 | MS.gene060095:CDS |
| AATCGGTGGTCCTGTTGCTG+AGG | 0.629571 | 6.2:+68777434 | MS.gene060095:CDS |
| AATGTTGACTCAGCAGTAGG+TGG | 0.630920 | 6.2:+68779315 | MS.gene060095:CDS |
| TCGCCATCTTCACCTGACAC+CGG | 0.631389 | 6.2:-68777396 | None:intergenic |
| TCACCACTACTAGCCCAACC+AGG | 0.632206 | 6.2:-68777309 | None:intergenic |
| ACACCTGGTTGGGCTAGTAG+TGG | 0.633926 | 6.2:+68777306 | MS.gene060095:CDS |
| GGAAGCTTCAGAAAAGAGGG+TGG | 0.641534 | 6.2:+68778665 | MS.gene060095:CDS |
| TTTACCTTCAATTTAAGACA+AGG | 0.641990 | 6.2:+68775887 | MS.gene060095:CDS |
| ATTGGAGATCCTACAACACC+TGG | 0.644431 | 6.2:+68777291 | MS.gene060095:CDS |
| TAAAGAAGGTGCTATTGGAG+TGG | 0.647755 | 6.2:+68777158 | MS.gene060095:CDS |
| ACTCAGCAGTAGGTGGACCA+GGG | 0.657840 | 6.2:+68779322 | MS.gene060095:CDS |
| TACTAGACCCCAAACACTTG+CGG | 0.659154 | 6.2:-68786137 | None:intergenic |
| TTATTCTGATGTGATAGATG+AGG | 0.659926 | 6.2:+68775928 | MS.gene060095:CDS |
| AATTCTCAATCTCAGTTACA+CGG | 0.660759 | 6.2:+68777512 | MS.gene060095:CDS |
| AACATCATAGGATGTTACAT+GGG | 0.671498 | 6.2:-68775804 | None:intergenic |
| AAGATAATTAGATCAATCGG+TGG | 0.675973 | 6.2:+68777420 | MS.gene060095:CDS |
| TGATGAATTTGTCAGCACCA+AGG | 0.677487 | 6.2:-68775852 | None:intergenic |
| GGTTTATGTTAACTATGGAA+GGG | 0.678530 | 6.2:+68777029 | MS.gene060095:CDS |
| GTGGTTCCAGTGAAGCAAAG+TGG | 0.679227 | 6.2:+68777208 | MS.gene060095:CDS |
| ATGGGTTGGTATGTTACATG+AGG | 0.692744 | 6.2:-68775786 | None:intergenic |
| AGACAAGGAAGCTATGAAGG+TGG | 0.693334 | 6.2:+68775902 | MS.gene060095:CDS |
| GTTGCTGAGGATGATTGGCA+GGG | 0.701629 | 6.2:+68777447 | MS.gene060095:CDS |
| TGAGTGTGAGAGACTATCAA+AGG | 0.718262 | 6.2:+68777329 | MS.gene060095:CDS |
| GCCATGATTCTGCAGTACGT+AGG | 0.727975 | 6.2:-68789174 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 68775560 | 68789262 | 68775560 | ID=MS.gene060095 |
| chr6.2 | mRNA | 68775560 | 68789262 | 68775560 | ID=MS.gene060095.t1;Parent=MS.gene060095 |
| chr6.2 | exon | 68775560 | 68775983 | 68775560 | ID=MS.gene060095.t1.exon1;Parent=MS.gene060095.t1 |
| chr6.2 | CDS | 68775560 | 68775983 | 68775560 | ID=cds.MS.gene060095.t1;Parent=MS.gene060095.t1 |
| chr6.2 | exon | 68777010 | 68777533 | 68777010 | ID=MS.gene060095.t1.exon2;Parent=MS.gene060095.t1 |
| chr6.2 | CDS | 68777010 | 68777533 | 68777010 | ID=cds.MS.gene060095.t1;Parent=MS.gene060095.t1 |
| chr6.2 | exon | 68778164 | 68778231 | 68778164 | ID=MS.gene060095.t1.exon3;Parent=MS.gene060095.t1 |
| chr6.2 | CDS | 68778164 | 68778231 | 68778164 | ID=cds.MS.gene060095.t1;Parent=MS.gene060095.t1 |
| chr6.2 | exon | 68778342 | 68778423 | 68778342 | ID=MS.gene060095.t1.exon4;Parent=MS.gene060095.t1 |
| chr6.2 | CDS | 68778342 | 68778423 | 68778342 | ID=cds.MS.gene060095.t1;Parent=MS.gene060095.t1 |
| chr6.2 | exon | 68778649 | 68778741 | 68778649 | ID=MS.gene060095.t1.exon5;Parent=MS.gene060095.t1 |
| chr6.2 | CDS | 68778649 | 68778741 | 68778649 | ID=cds.MS.gene060095.t1;Parent=MS.gene060095.t1 |
| chr6.2 | exon | 68779249 | 68779401 | 68779249 | ID=MS.gene060095.t1.exon6;Parent=MS.gene060095.t1 |
| chr6.2 | CDS | 68779249 | 68779401 | 68779249 | ID=cds.MS.gene060095.t1;Parent=MS.gene060095.t1 |
| chr6.2 | exon | 68779501 | 68779569 | 68779501 | ID=MS.gene060095.t1.exon7;Parent=MS.gene060095.t1 |
| chr6.2 | CDS | 68779501 | 68779569 | 68779501 | ID=cds.MS.gene060095.t1;Parent=MS.gene060095.t1 |
| chr6.2 | exon | 68780131 | 68780218 | 68780131 | ID=MS.gene060095.t1.exon8;Parent=MS.gene060095.t1 |
| chr6.2 | CDS | 68780131 | 68780218 | 68780131 | ID=cds.MS.gene060095.t1;Parent=MS.gene060095.t1 |
| chr6.2 | exon | 68784878 | 68784961 | 68784878 | ID=MS.gene060095.t1.exon9;Parent=MS.gene060095.t1 |
| chr6.2 | CDS | 68784878 | 68784961 | 68784878 | ID=cds.MS.gene060095.t1;Parent=MS.gene060095.t1 |
| chr6.2 | exon | 68786137 | 68786225 | 68786137 | ID=MS.gene060095.t1.exon10;Parent=MS.gene060095.t1 |
| chr6.2 | CDS | 68786137 | 68786225 | 68786137 | ID=cds.MS.gene060095.t1;Parent=MS.gene060095.t1 |
| chr6.2 | exon | 68786331 | 68786447 | 68786331 | ID=MS.gene060095.t1.exon11;Parent=MS.gene060095.t1 |
| chr6.2 | CDS | 68786331 | 68786447 | 68786331 | ID=cds.MS.gene060095.t1;Parent=MS.gene060095.t1 |
| chr6.2 | exon | 68786847 | 68786987 | 68786847 | ID=MS.gene060095.t1.exon12;Parent=MS.gene060095.t1 |
| chr6.2 | CDS | 68786847 | 68786987 | 68786847 | ID=cds.MS.gene060095.t1;Parent=MS.gene060095.t1 |
| chr6.2 | exon | 68789094 | 68789262 | 68789094 | ID=MS.gene060095.t1.exon13;Parent=MS.gene060095.t1 |
| chr6.2 | CDS | 68789094 | 68789262 | 68789094 | ID=cds.MS.gene060095.t1;Parent=MS.gene060095.t1 |
| Gene Sequence |
| Protein sequence |
