Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24853.t1 | KEH32481.1 | 97.6 | 1075 | 25 | 1 | 2 | 1075 | 1 | 1075 | 0.00E+00 | 2023.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24853.t1 | A0A072UT14 | 97.6 | 1075 | 25 | 1 | 2 | 1075 | 1 | 1075 | 0.0e+00 | 2023.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051795 | MS.gene24853 | 0.809272 | 2.05E-50 | -1.69E-46 |
| MS.gene051796 | MS.gene24853 | 0.843148 | 1.67E-58 | -1.69E-46 |
| MS.gene051826 | MS.gene24853 | 0.806477 | 8.07E-50 | -1.69E-46 |
| MS.gene051834 | MS.gene24853 | 0.852869 | 3.48E-61 | -1.69E-46 |
| MS.gene051835 | MS.gene24853 | 0.858086 | 1.05E-62 | -1.69E-46 |
| MS.gene056301 | MS.gene24853 | 0.812687 | 3.74E-51 | -1.69E-46 |
| MS.gene06013 | MS.gene24853 | 0.843093 | 1.73E-58 | -1.69E-46 |
| MS.gene060347 | MS.gene24853 | 0.849054 | 4.14E-60 | -1.69E-46 |
| MS.gene060349 | MS.gene24853 | 0.81573 | 7.96E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 283 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATTGATATTCCTAATTT+TGG | 0.048782 | 8.1:+6280313 | MS.gene24853:CDS |
| TCCTCTTCTTGCACCATTTC+AGG | 0.145762 | 8.1:-6280663 | None:intergenic |
| TATTATCTTGGCCGTTTCTA+TGG | 0.153658 | 8.1:-6277018 | None:intergenic |
| GATCTCTTCTTCACATTTAC+AGG | 0.154540 | 8.1:-6275396 | None:intergenic |
| ACTCTGAATTACACCATTAT+TGG | 0.167803 | 8.1:-6276322 | None:intergenic |
| AATAATGGTTATGGAATTAT+TGG | 0.182048 | 8.1:+6280265 | MS.gene24853:CDS |
| CTGCACTGGCATTTGTTAAA+TGG | 0.200481 | 8.1:+6281994 | MS.gene24853:CDS |
| CCTCAGCAAATTAGATTAAA+AGG | 0.206334 | 8.1:+6277739 | MS.gene24853:CDS |
| CTTGGATTCAACCCAAAATT+AGG | 0.210889 | 8.1:-6280325 | None:intergenic |
| ACATTGAATAAACCTGTTAA+TGG | 0.211820 | 8.1:+6276444 | MS.gene24853:CDS |
| GGTTCCATCTGCTTCCAAAA+TGG | 0.236319 | 8.1:-6278523 | None:intergenic |
| AGCTTTGGCAACTCAATAAA+TGG | 0.245736 | 8.1:+6280346 | MS.gene24853:CDS |
| AGAAACAAGCTTACTCTTTC+TGG | 0.249291 | 8.1:-6277902 | None:intergenic |
| AGTGCAGCAGCAGATTATTT+TGG | 0.260427 | 8.1:+6278247 | MS.gene24853:CDS |
| ACTCCTTCTCCAGCCCATTT+TGG | 0.263999 | 8.1:+6278509 | MS.gene24853:CDS |
| CTTGTTTGGGCCAAGACTTT+TGG | 0.269831 | 8.1:-6275562 | None:intergenic |
| GCATTCCCTGTTTAGTTTCC+TGG | 0.270170 | 8.1:-6276470 | None:intergenic |
| GCTTTCAGATCTATCTCTTC+TGG | 0.271173 | 8.1:-6277844 | None:intergenic |
| AGAAAGAGTAAGCTTGTTTC+TGG | 0.278054 | 8.1:+6277904 | MS.gene24853:CDS |
| GAAACCATTGTTAATAGATA+TGG | 0.281103 | 8.1:+6279968 | MS.gene24853:CDS |
| GAAGTTCGAGGGCGCTTGTT+TGG | 0.282062 | 8.1:-6275576 | None:intergenic |
| CATTCTGCTAATAATGGTTA+TGG | 0.297535 | 8.1:+6280256 | MS.gene24853:CDS |
| AGATGGACACGGGGAGTTAT+TGG | 0.299136 | 8.1:+6278370 | MS.gene24853:CDS |
| CTCATACGCTTGACGTCTTC+TGG | 0.300310 | 8.1:-6275200 | None:intergenic |
| CGCTTGACGTCTTCTGGTAC+TGG | 0.311609 | 8.1:-6275194 | None:intergenic |
| TCTTGCCTGTATCTTCAAAT+TGG | 0.314315 | 8.1:-6282034 | None:intergenic |
| CTTCCCAGCATAGCATTGTT+AGG | 0.322216 | 8.1:+6282102 | MS.gene24853:CDS |
| TCTTCGCATTCTGCTAATAA+TGG | 0.330315 | 8.1:+6280250 | MS.gene24853:CDS |
| CTAAAATGAATACTGCTATT+CGG | 0.339196 | 8.1:+6277383 | MS.gene24853:CDS |
| GTGTTATCCACATTATTCAT+AGG | 0.345219 | 8.1:+6283603 | MS.gene24853:CDS |
| AAGTTCGAGGGCGCTTGTTT+GGG | 0.348775 | 8.1:-6275575 | None:intergenic |
| TTAAATGACCGCTCAGTCTT+GGG | 0.349182 | 8.1:+6275459 | MS.gene24853:CDS |
| CCACATGACGATTAGACTTA+TGG | 0.352469 | 8.1:-6275085 | None:intergenic |
| CAAGCGCCCTCGAACTTCTA+TGG | 0.353280 | 8.1:+6275581 | MS.gene24853:CDS |
| TATAGGCTGGGAGTTTCTAA+TGG | 0.357733 | 8.1:+6276929 | MS.gene24853:intron |
| ATCTCTCAGCAGACTGGGTT+GGG | 0.358629 | 8.1:+6276980 | MS.gene24853:CDS |
| GGTTTAGTTGGGTCAGTAGA+TGG | 0.361177 | 8.1:+6278353 | MS.gene24853:intron |
| TAAAATGAATACTGCTATTC+GGG | 0.363800 | 8.1:+6277384 | MS.gene24853:CDS |
| TGGTTTCCAGGAAACTAAAC+AGG | 0.366541 | 8.1:+6276464 | MS.gene24853:CDS |
| CGGGCTCCACGGTCAGGTTC+AGG | 0.366569 | 8.1:+6277403 | MS.gene24853:CDS |
| CTTGTTTCTGGTGAAGAACT+TGG | 0.370409 | 8.1:+6277916 | MS.gene24853:CDS |
| GTTCGGAGGCAAGGCAGGAC+GGG | 0.371161 | 8.1:+6277946 | MS.gene24853:CDS |
| CCGAGGAAGATATTACTTAC+TGG | 0.379351 | 8.1:+6278563 | MS.gene24853:CDS |
| CCAAGCTTCTCAGATGTCAT+TGG | 0.379521 | 8.1:-6278000 | None:intergenic |
| AGGAACAAATCCTTGAATAA+AGG | 0.379871 | 8.1:-6282071 | None:intergenic |
| GTTACCAAGTTAGACACCTT+TGG | 0.380300 | 8.1:-6277880 | None:intergenic |
| TAAACCTGTTAATGGTTTCC+AGG | 0.380515 | 8.1:+6276452 | MS.gene24853:CDS |
| GTTTCCTGGAAACCATTAAC+AGG | 0.382805 | 8.1:-6276456 | None:intergenic |
| TCTGCCAGGGGACAACGGTC+GGG | 0.386527 | 8.1:-6277567 | None:intergenic |
| AATTCTCTCGTCAGGCCATC+AGG | 0.386699 | 8.1:+6276264 | MS.gene24853:CDS |
| CTATTGGAGCTTCAAAGTAT+TGG | 0.387033 | 8.1:+6280451 | MS.gene24853:CDS |
| GATGTGGCTGGTAATGATAT+TGG | 0.387917 | 8.1:+6277682 | MS.gene24853:CDS |
| GAACAGCTGTTCCTAATGAT+TGG | 0.389264 | 8.1:+6277458 | MS.gene24853:CDS |
| CATTACACTAGAACGATCAT+TGG | 0.389335 | 8.1:-6275436 | None:intergenic |
| TGAACAACCGGTGACATCTT+GGG | 0.395027 | 8.1:-6277433 | None:intergenic |
| TGAGAAAGCTCCCAATCATT+AGG | 0.397045 | 8.1:-6277469 | None:intergenic |
| TATAAATGATAAGCTTCTAT+TGG | 0.401761 | 8.1:+6280435 | MS.gene24853:CDS |
| GTTAATAGATATGGATTGAT+TGG | 0.401987 | 8.1:+6279977 | MS.gene24853:CDS |
| TTTCAGCGAGCCTTTATTCA+AGG | 0.402477 | 8.1:+6282061 | MS.gene24853:CDS |
| GTTCCATCTGCTTCCAAAAT+GGG | 0.405262 | 8.1:-6278522 | None:intergenic |
| CCTAGTAATATCCTCCGATA+TGG | 0.406751 | 8.1:-6280691 | None:intergenic |
| CGACATGTTAATGCTGCTCT+TGG | 0.406955 | 8.1:+6275116 | MS.gene24853:CDS |
| ATGAACAACCGGTGACATCT+TGG | 0.407195 | 8.1:-6277434 | None:intergenic |
| TTTCTTCTTATAGCCTGAAA+TGG | 0.408158 | 8.1:+6280650 | MS.gene24853:intron |
| GTTAAATGACCGCTCAGTCT+TGG | 0.410180 | 8.1:+6275458 | MS.gene24853:CDS |
| AGCGGTAAGGTTGGCGTTCA+AGG | 0.411346 | 8.1:+6275486 | MS.gene24853:CDS |
| GATAATGAATCTGAGCTTGA+TGG | 0.412037 | 8.1:+6280175 | MS.gene24853:CDS |
| TTTGGGTTGAATCCAAGCTT+TGG | 0.416009 | 8.1:+6280331 | MS.gene24853:CDS |
| ATATGCTTCTCCTCTGTCTC+TGG | 0.416454 | 8.1:+6282160 | MS.gene24853:CDS |
| TTGGGCAGAGAAGACAGAAT+TGG | 0.416990 | 8.1:-6274972 | None:intergenic |
| ACCTATTGTAGGTGATGGTT+GGG | 0.417451 | 8.1:+6276359 | MS.gene24853:CDS |
| AAGCTACGGATTGCCAATAA+TGG | 0.417615 | 8.1:+6276309 | MS.gene24853:CDS |
| ATTTCCTAACAATGCTATGC+TGG | 0.420888 | 8.1:-6282106 | None:intergenic |
| CTTGGCCGTTTCTATGGGTA+GGG | 0.421449 | 8.1:-6277012 | None:intergenic |
| CAGAGGTCTATCCGGGCTAC+TGG | 0.422624 | 8.1:-6274874 | None:intergenic |
| ATAATGGTTATGGAATTATT+GGG | 0.423024 | 8.1:+6280266 | MS.gene24853:CDS |
| TGACAAGGGAATTATTATCT+TGG | 0.424434 | 8.1:-6277030 | None:intergenic |
| GGTTTATTCAATGTAGTACT+TGG | 0.424721 | 8.1:-6276435 | None:intergenic |
| GCAGCGTACAGAGGTCTATC+CGG | 0.429308 | 8.1:-6274882 | None:intergenic |
| AACGACTTGCTACTGATTCT+CGG | 0.429342 | 8.1:+6276496 | MS.gene24853:CDS |
| AAATTCAAGCAATAACAAAA+TGG | 0.433171 | 8.1:+6281962 | MS.gene24853:CDS |
| CTCTGCCAGGGGACAACGGT+CGG | 0.434743 | 8.1:-6277568 | None:intergenic |
| TGAGGTTAAACCAAAAGAAA+AGG | 0.435183 | 8.1:+6277813 | MS.gene24853:CDS |
| TGCCTGTATCTTCAAATTGG+TGG | 0.435626 | 8.1:-6282031 | None:intergenic |
| TTTATTGAGTTGCCAAAGCT+TGG | 0.436808 | 8.1:-6280343 | None:intergenic |
| ATTGTATTGCAACTCTGAAC+AGG | 0.438724 | 8.1:-6280404 | None:intergenic |
| TGGTCTATTACTAGTAACTT+TGG | 0.439197 | 8.1:-6275065 | None:intergenic |
| GCTATTCGGGCTCCACGGTC+AGG | 0.441787 | 8.1:+6277397 | MS.gene24853:CDS |
| TTATCTGAAAGTGAAGAGTC+TGG | 0.443993 | 8.1:+6277784 | MS.gene24853:CDS |
| CTTCCCCGACCGTTGTCCCC+TGG | 0.444160 | 8.1:+6277563 | MS.gene24853:CDS |
| CCGGTTCCTTCAAACATAGA+TGG | 0.446868 | 8.1:+6279941 | MS.gene24853:CDS |
| CAGAAGACGTCAAGCGTATG+AGG | 0.447675 | 8.1:+6275201 | MS.gene24853:CDS |
| AGGCACAAAACTTGTTCTTC+TGG | 0.452853 | 8.1:-6277614 | None:intergenic |
| GTGAAGGGTGTTATCAAATC+TGG | 0.454632 | 8.1:+6278398 | MS.gene24853:CDS |
| CTGTTAGTTCAGACAAGGAT+AGG | 0.454762 | 8.1:+6277071 | MS.gene24853:CDS |
| GGAGTTATTGGCTGCTGTGA+AGG | 0.454792 | 8.1:+6278382 | MS.gene24853:CDS |
| TTATGGAATTATTGGGAAAC+CGG | 0.455569 | 8.1:+6280273 | MS.gene24853:CDS |
| CCATCTATGTTTGAAGGAAC+CGG | 0.457111 | 8.1:-6279941 | None:intergenic |
| ATGTGGCTGGTAATGATATT+GGG | 0.458028 | 8.1:+6277683 | MS.gene24853:CDS |
| TGTTAGGAAATCAGATGGAT+TGG | 0.459381 | 8.1:+6282118 | MS.gene24853:CDS |
| TACCTATTGTAGGTGATGGT+TGG | 0.460317 | 8.1:+6276358 | MS.gene24853:CDS |
| TCGGAGGATATTACTAGGTT+AGG | 0.460701 | 8.1:+6280696 | MS.gene24853:CDS |
| CTGCCAGGGGACAACGGTCG+GGG | 0.461724 | 8.1:-6277566 | None:intergenic |
| TACCATGTTATGATCTCCCT+TGG | 0.463961 | 8.1:-6280068 | None:intergenic |
| ATGGTGTTCGGAGGCAAGGC+AGG | 0.465540 | 8.1:+6277941 | MS.gene24853:CDS |
| CGATCAGAAAGCTTCCTTGT+TGG | 0.466660 | 8.1:-6278190 | None:intergenic |
| TGTTCCAAAGGTGTCTAACT+TGG | 0.468790 | 8.1:+6277876 | MS.gene24853:CDS |
| AACTTCTATGGTGGATGTAA+AGG | 0.471009 | 8.1:+6275593 | MS.gene24853:CDS |
| GCTGGTAATGATATTGGGTT+AGG | 0.471374 | 8.1:+6277688 | MS.gene24853:CDS |
| AACAGCTGTTCCTAATGATT+GGG | 0.472608 | 8.1:+6277459 | MS.gene24853:CDS |
| TTGCTGCAGTTGCTTCATCA+TGG | 0.473376 | 8.1:+6283581 | MS.gene24853:CDS |
| CTGTCTCTGGAAGCAACACC+AGG | 0.473593 | 8.1:+6282173 | MS.gene24853:CDS |
| TACGCACCAATTCTCTCGTC+AGG | 0.474209 | 8.1:+6276256 | MS.gene24853:CDS |
| TTCCCTTGTCAACGATAAGC+GGG | 0.474934 | 8.1:+6277042 | MS.gene24853:CDS |
| GATGGAATCTCTCAGCAGAC+TGG | 0.475087 | 8.1:+6276974 | MS.gene24853:CDS |
| CCATATCGGAGGATATTACT+AGG | 0.476716 | 8.1:+6280691 | MS.gene24853:CDS |
| AATGGTCAAGCAAGCTGCAC+TGG | 0.477784 | 8.1:+6281980 | MS.gene24853:CDS |
| GTAAGCTTACCACTGATTCA+AGG | 0.479044 | 8.1:-6280480 | None:intergenic |
| GCATCAATTGTACCTGTCCT+TGG | 0.479173 | 8.1:-6280728 | None:intergenic |
| TCAGAAAGCTTCCTTGTTGG+TGG | 0.479190 | 8.1:-6278187 | None:intergenic |
| TTAGTACTATTAACACCAGC+TGG | 0.479647 | 8.1:-6277508 | None:intergenic |
| TACCACCAATTTGAAGATAC+AGG | 0.482843 | 8.1:+6282029 | MS.gene24853:CDS |
| TGATGGCCTGACGAGAGAAT+TGG | 0.482919 | 8.1:-6276262 | None:intergenic |
| AGAGTTGCAATACAATAGCT+TGG | 0.485205 | 8.1:+6280411 | MS.gene24853:CDS |
| GAGTTGCAATACAATAGCTT+GGG | 0.485947 | 8.1:+6280412 | MS.gene24853:CDS |
| GAGCGAAACTTACCTATTGT+AGG | 0.486176 | 8.1:+6276348 | MS.gene24853:CDS |
| AAGAACTTGGAGATGGTGTT+CGG | 0.487321 | 8.1:+6277929 | MS.gene24853:CDS |
| AGAGACAGAGGAGAAGCATA+TGG | 0.488395 | 8.1:-6282158 | None:intergenic |
| AGAAGAGGATGAAGCCATAT+CGG | 0.489438 | 8.1:+6280677 | MS.gene24853:CDS |
| TCGGTTATCAAACTGAAGAA+AGG | 0.490916 | 8.1:-6278544 | None:intergenic |
| GCTTGACGTCTTCTGGTACT+GGG | 0.492283 | 8.1:-6275193 | None:intergenic |
| ATCTAATGAAGCAGCTATGT+TGG | 0.493550 | 8.1:-6274916 | None:intergenic |
| GAACAACCGGTGACATCTTG+GGG | 0.495883 | 8.1:-6277432 | None:intergenic |
| CGACCGTTGTCCCCTGGCAG+AGG | 0.497279 | 8.1:+6277569 | MS.gene24853:CDS |
| GGCATTTGTTAAATGGACAT+TGG | 0.499248 | 8.1:+6282001 | MS.gene24853:CDS |
| TATGCTGGGAAGAAGCAGTT+AGG | 0.500503 | 8.1:-6282091 | None:intergenic |
| TGAAGAGTCTGGGGTGGCTG+AGG | 0.500599 | 8.1:+6277795 | MS.gene24853:CDS |
| GAACTAGATGGAGATTCATC+AGG | 0.502685 | 8.1:-6275146 | None:intergenic |
| TCCCAACCATCACCTACAAT+AGG | 0.505403 | 8.1:-6276360 | None:intergenic |
| CATCTGCTTCCAAAATGGGC+TGG | 0.505424 | 8.1:-6278518 | None:intergenic |
| ACTGAAAATTAGATAGTGAA+TGG | 0.507055 | 8.1:-6280225 | None:intergenic |
| GCTGCTTCATTAGATAGATC+AGG | 0.508302 | 8.1:+6274924 | MS.gene24853:CDS |
| ACAGCTGTTCTATGAACAAC+CGG | 0.508478 | 8.1:-6277445 | None:intergenic |
| ATGTTTGAAGGAACCGGAGT+TGG | 0.510195 | 8.1:-6279935 | None:intergenic |
| ATCAGCAAAAGTCGGAAGAA+AGG | 0.510210 | 8.1:+6275538 | MS.gene24853:CDS |
| AGTCTTGGGGCCAAGCGGTA+AGG | 0.510377 | 8.1:+6275473 | MS.gene24853:CDS |
| TCCAGCAAAACATGGGGATG+TGG | 0.511478 | 8.1:+6275013 | MS.gene24853:CDS |
| CTCTTCTTCACATTTACAGG+TGG | 0.513574 | 8.1:-6275393 | None:intergenic |
| TGATGCATCTTCCAGTAGCC+CGG | 0.514211 | 8.1:+6274863 | MS.gene24853:CDS |
| TCACAACCATCTATGTTTGA+AGG | 0.514741 | 8.1:-6279947 | None:intergenic |
| GAACTACTTCTCAACATGTT+GGG | 0.516077 | 8.1:-6274990 | None:intergenic |
| AACTTACCTATTGTAGGTGA+TGG | 0.516763 | 8.1:+6276354 | MS.gene24853:CDS |
| TCTTGGCCGTTTCTATGGGT+AGG | 0.518049 | 8.1:-6277013 | None:intergenic |
| TTCGGAGGCAAGGCAGGACG+GGG | 0.518811 | 8.1:+6277947 | MS.gene24853:CDS |
| TCTCCATCTAGTTCTGCAAA+AGG | 0.519310 | 8.1:+6275155 | MS.gene24853:CDS |
| GAGTTATTGGCTGCTGTGAA+GGG | 0.519777 | 8.1:+6278383 | MS.gene24853:CDS |
| AAGAAGAGATCTCGAGTTGA+AGG | 0.521812 | 8.1:+6275408 | MS.gene24853:CDS |
| ATAATCTGCTGCTGCACTGA+TGG | 0.522575 | 8.1:-6278242 | None:intergenic |
| AAGCACTCTGACTCCAACTC+CGG | 0.524066 | 8.1:+6279922 | MS.gene24853:CDS |
| TGAACGCCAACCTTACCGCT+TGG | 0.526004 | 8.1:-6275483 | None:intergenic |
| CTTCCAAAATGGGCTGGAGA+AGG | 0.528410 | 8.1:-6278512 | None:intergenic |
| GGATTCGTGAGACGCTCAGC+TGG | 0.528645 | 8.1:+6277709 | MS.gene24853:CDS |
| TTAAACCAAAAGAAAAGGGC+AGG | 0.529000 | 8.1:+6277818 | MS.gene24853:CDS |
| GAGGTTAAACCAAAAGAAAA+GGG | 0.529191 | 8.1:+6277814 | MS.gene24853:CDS |
| TCATCATTACTCGAAACAAC+AGG | 0.530335 | 8.1:-6277634 | None:intergenic |
| ATTATCTTGGCCGTTTCTAT+GGG | 0.530350 | 8.1:-6277017 | None:intergenic |
| CTGATCTAGTTCAAAACCAC+CGG | 0.534363 | 8.1:-6275520 | None:intergenic |
| AATCTCTCAGCAGACTGGGT+TGG | 0.535573 | 8.1:+6276979 | MS.gene24853:CDS |
| AAGGAAGCTTTCTGATCGTA+AGG | 0.535690 | 8.1:+6278195 | MS.gene24853:CDS |
| TCTCAATGCCACAAGGTCAC+TGG | 0.536594 | 8.1:+6277975 | MS.gene24853:CDS |
| TAGGAAATCAGATGGATTGG+AGG | 0.537127 | 8.1:+6282121 | MS.gene24853:CDS |
| TGTTCGGAGGCAAGGCAGGA+CGG | 0.537630 | 8.1:+6277945 | MS.gene24853:CDS |
| TTTCCAACCTATGAATAATG+TGG | 0.539717 | 8.1:-6283610 | None:intergenic |
| ACGTCTTCTGGTACTGGGGA+TGG | 0.539976 | 8.1:-6275188 | None:intergenic |
| AGTAGTTCTCCAGCAAAACA+TGG | 0.541325 | 8.1:+6275005 | MS.gene24853:CDS |
| TATCTGAAAGTGAAGAGTCT+GGG | 0.542796 | 8.1:+6277785 | MS.gene24853:CDS |
| GAAGAAAGGACCAAAAGTCT+TGG | 0.542999 | 8.1:+6275552 | MS.gene24853:CDS |
| TAAAGCATTAATGTCTAGCT+TGG | 0.543499 | 8.1:+6280381 | MS.gene24853:CDS |
| GATGGAGAATTAGAATTGAG+TGG | 0.544477 | 8.1:+6280193 | MS.gene24853:CDS |
| CCAGTAAGTAATATCTTCCT+CGG | 0.545955 | 8.1:-6278563 | None:intergenic |
| TTATGATCTCCCTTGGGCAG+TGG | 0.546847 | 8.1:-6280061 | None:intergenic |
| CACATCAGAAACAGCATCCA+CGG | 0.547761 | 8.1:-6277665 | None:intergenic |
| GAAGAGATAGATCTGAAAGC+TGG | 0.548176 | 8.1:+6277847 | MS.gene24853:CDS |
| GGAGATGGTGTTCGGAGGCA+AGG | 0.549572 | 8.1:+6277937 | MS.gene24853:CDS |
| AGAACTACTTCTCAACATGT+TGG | 0.553236 | 8.1:-6274991 | None:intergenic |
| CAGCGTACAGAGGTCTATCC+GGG | 0.553740 | 8.1:-6274881 | None:intergenic |
| AACTTCATTGAATACAGATA+AGG | 0.557917 | 8.1:-6275367 | None:intergenic |
| AAGGATGTGATAAGAATGAA+AGG | 0.559534 | 8.1:+6278061 | MS.gene24853:CDS |
| ATATCACTTTCATCATGTGC+CGG | 0.560029 | 8.1:-6280292 | None:intergenic |
| CTTGACGTCTTCTGGTACTG+GGG | 0.560535 | 8.1:-6275192 | None:intergenic |
| CGCTCAGTCTTGGGGCCAAG+CGG | 0.560603 | 8.1:+6275468 | MS.gene24853:CDS |
| TTTCCTAACAATGCTATGCT+GGG | 0.562049 | 8.1:-6282105 | None:intergenic |
| GCTGCTGCACTGATGGCAGT+AGG | 0.562066 | 8.1:-6278235 | None:intergenic |
| TTGGGGCCAAGCGGTAAGGT+TGG | 0.562692 | 8.1:+6275477 | MS.gene24853:CDS |
| TTTGTATTCAAGCACTGTGA+AGG | 0.563609 | 8.1:+6275229 | MS.gene24853:CDS |
| ACATCCACCATAGAAGTTCG+AGG | 0.563683 | 8.1:-6275588 | None:intergenic |
| CGTACCCCTACCCATAGAAA+CGG | 0.564946 | 8.1:+6277007 | MS.gene24853:CDS |
| GATGCTGTTTCTGATGTGGC+TGG | 0.565211 | 8.1:+6277670 | MS.gene24853:CDS |
| AGCATTGTTAGGAAATCAGA+TGG | 0.566367 | 8.1:+6282113 | MS.gene24853:CDS |
| TGAACTAGATCAGCAAAAGT+CGG | 0.568638 | 8.1:+6275530 | MS.gene24853:CDS |
| AGGCGAGCTTTACCAAGGAC+AGG | 0.572551 | 8.1:+6280716 | MS.gene24853:CDS |
| TCAGAAACAGCATCCACGGC+AGG | 0.573599 | 8.1:-6277661 | None:intergenic |
| TCTTCTTCACATTTACAGGT+GGG | 0.574951 | 8.1:-6275392 | None:intergenic |
| TGGCCTCTGCCAGGGGACAA+CGG | 0.575112 | 8.1:-6277572 | None:intergenic |
| ACCATGTTATGATCTCCCTT+GGG | 0.576619 | 8.1:-6280067 | None:intergenic |
| TAGTACTATTAACACCAGCT+GGG | 0.577011 | 8.1:-6277507 | None:intergenic |
| CCAATGACATCTGAGAAGCT+TGG | 0.577012 | 8.1:+6278000 | MS.gene24853:CDS |
| ATGGAATCTCTCAGCAGACT+GGG | 0.577276 | 8.1:+6276975 | MS.gene24853:CDS |
| TGTTAGTTCAGACAAGGATA+GGG | 0.577411 | 8.1:+6277072 | MS.gene24853:CDS |
| AGGTAGCTTTCGAGAATGCA+TGG | 0.577533 | 8.1:+6274944 | MS.gene24853:CDS |
| ACGTGTGAAAATGTTTAATG+AGG | 0.580182 | 8.1:+6275344 | MS.gene24853:CDS |
| CATAAGCTGTCACAACAAGT+TGG | 0.581811 | 8.1:-6281137 | None:intergenic |
| AGCTGGACAAAATGTTCCAA+AGG | 0.582515 | 8.1:+6277864 | MS.gene24853:CDS |
| ATTCTCTCGTCAGGCCATCA+GGG | 0.584314 | 8.1:+6276265 | MS.gene24853:CDS |
| CATCCACCATAGAAGTTCGA+GGG | 0.585104 | 8.1:-6275587 | None:intergenic |
| TGGACTTGACCTTGAATCAG+TGG | 0.585412 | 8.1:+6280471 | MS.gene24853:CDS |
| AGAAAAGTTACCACTGCCCA+AGG | 0.585947 | 8.1:+6280051 | MS.gene24853:CDS |
| CGTGGATGCTGTTTCTGATG+TGG | 0.587597 | 8.1:+6277666 | MS.gene24853:CDS |
| TTGGCCGTTTCTATGGGTAG+GGG | 0.592568 | 8.1:-6277011 | None:intergenic |
| TCTCTATCAACAGTCCCTGA+TGG | 0.593157 | 8.1:-6276279 | None:intergenic |
| ATAGAGATAAAGAAAAGCTA+CGG | 0.593295 | 8.1:+6276295 | MS.gene24853:CDS |
| TGGAATCCTTGCAGCAAGGT+CGG | 0.595199 | 8.1:+6278160 | MS.gene24853:intron |
| GCCTGAAATGGTGCAAGAAG+AGG | 0.597062 | 8.1:+6280662 | MS.gene24853:intron |
| CAATCCATATCTATTAACAA+TGG | 0.597593 | 8.1:-6279972 | None:intergenic |
| CCTCTGTACGCTGCGCAGCG+TGG | 0.597854 | 8.1:+6274891 | MS.gene24853:CDS |
| CATTGGTGCCAGTGACCTTG+TGG | 0.600420 | 8.1:-6277983 | None:intergenic |
| AAATGGGCTGGAGAAGGAGT+AGG | 0.600944 | 8.1:-6278506 | None:intergenic |
| GTTCAAGGTCATCATGTCAC+CGG | 0.603105 | 8.1:+6275501 | MS.gene24853:CDS |
| AGAAGAGATCTCGAGTTGAA+GGG | 0.605427 | 8.1:+6275409 | MS.gene24853:CDS |
| CAAGGTCATCATGTCACCGG+TGG | 0.606676 | 8.1:+6275504 | MS.gene24853:CDS |
| GATAAAGCTGACGAAGGTGA+AGG | 0.607931 | 8.1:-6277766 | None:intergenic |
| GTAGTTCTCCAGCAAAACAT+GGG | 0.608016 | 8.1:+6275006 | MS.gene24853:CDS |
| TTGGGTCAGTAGATGGACAC+GGG | 0.609726 | 8.1:+6278360 | MS.gene24853:CDS |
| GTTGCAGCTAGCAAATCAGA+TGG | 0.614494 | 8.1:+6276956 | MS.gene24853:CDS |
| ATTCCCTTGTCAACGATAAG+CGG | 0.615124 | 8.1:+6277041 | MS.gene24853:CDS |
| AGTACTATTAACACCAGCTG+GGG | 0.615616 | 8.1:-6277506 | None:intergenic |
| GCTATAAGTCGTTGACAGAG+AGG | 0.616818 | 8.1:-6280091 | None:intergenic |
| TCAGAAGAAGATCGTAGCGG+TGG | 0.617335 | 8.1:+6280124 | MS.gene24853:CDS |
| TAAATGACCGCTCAGTCTTG+GGG | 0.617460 | 8.1:+6275460 | MS.gene24853:CDS |
| GCTTGTCGAGGTGCATCGAG+TGG | 0.617837 | 8.1:+6281936 | MS.gene24853:CDS |
| ATTAATTGACAGGCTTGTCG+AGG | 0.619306 | 8.1:+6281924 | MS.gene24853:intron |
| ATCTGAAAGTGAAGAGTCTG+GGG | 0.621108 | 8.1:+6277786 | MS.gene24853:CDS |
| CAACTAAGAAGTGCAAGACA+AGG | 0.626347 | 8.1:+6278042 | MS.gene24853:CDS |
| TTGGCTGTGAAAGAGATGTC+AGG | 0.626925 | 8.1:+6279996 | MS.gene24853:CDS |
| TACTAACAATCGCAAACGTG+TGG | 0.628851 | 8.1:+6277525 | MS.gene24853:CDS |
| GCAACTCCTGAACCTGACCG+TGG | 0.628986 | 8.1:-6277409 | None:intergenic |
| CCACGCTGCGCAGCGTACAG+AGG | 0.631484 | 8.1:-6274891 | None:intergenic |
| AGAAGACGTCAAGCGTATGA+GGG | 0.632040 | 8.1:+6275202 | MS.gene24853:CDS |
| GGCGCAGTCTCAATGCCACA+AGG | 0.632240 | 8.1:+6277968 | MS.gene24853:CDS |
| TCTGGTGAAGAACTTGGAGA+TGG | 0.633085 | 8.1:+6277922 | MS.gene24853:CDS |
| AGGTCGGTCGTCCACCAACA+AGG | 0.634464 | 8.1:+6278176 | MS.gene24853:CDS |
| GCGCCCTCGAACTTCTATGG+TGG | 0.635597 | 8.1:+6275584 | MS.gene24853:CDS |
| ACTTGCACCACATCACATTG+AGG | 0.637836 | 8.1:-6283555 | None:intergenic |
| GACCCCGCTTATCGTTGACA+AGG | 0.638938 | 8.1:-6277045 | None:intergenic |
| ATACTGCTATTCGGGCTCCA+CGG | 0.639890 | 8.1:+6277392 | MS.gene24853:CDS |
| AACTTGGAGATGGTGTTCGG+AGG | 0.639929 | 8.1:+6277932 | MS.gene24853:CDS |
| GTTGGGTCAGTAGATGGACA+CGG | 0.640060 | 8.1:+6278359 | MS.gene24853:intron |
| AGAGGATGAAGCCATATCGG+AGG | 0.640561 | 8.1:+6280680 | MS.gene24853:CDS |
| TAATGATGAAGCTCCTGCCG+TGG | 0.642986 | 8.1:+6277648 | MS.gene24853:CDS |
| CCATAAGTCTAATCGTCATG+TGG | 0.646801 | 8.1:+6275085 | MS.gene24853:CDS |
| TCGTTCTGTTAGTTCAGACA+AGG | 0.647341 | 8.1:+6277066 | MS.gene24853:CDS |
| CGCTTGGCCCCAAGACTGAG+CGG | 0.652842 | 8.1:-6275467 | None:intergenic |
| CTTTCAGATAAAGCTGACGA+AGG | 0.654396 | 8.1:-6277772 | None:intergenic |
| TTTCTTCAGTTTGATAACCG+AGG | 0.657033 | 8.1:+6278546 | MS.gene24853:CDS |
| TCAATGTGATGTGGTGCAAG+TGG | 0.657648 | 8.1:+6283557 | MS.gene24853:CDS |
| AACAACCGGTGACATCTTGG+GGG | 0.661134 | 8.1:-6277431 | None:intergenic |
| TATTACTTACTGGAAGCAGA+AGG | 0.666092 | 8.1:+6278573 | MS.gene24853:CDS |
| AGGTTAGGCGAGCTTTACCA+AGG | 0.670077 | 8.1:+6280711 | MS.gene24853:CDS |
| ATTCAAGCACTGTGAAGGCG+AGG | 0.671180 | 8.1:+6275234 | MS.gene24853:CDS |
| GGTGTTGCTTCCAGAGACAG+AGG | 0.671711 | 8.1:-6282170 | None:intergenic |
| GAAAAGTTACCACTGCCCAA+GGG | 0.674314 | 8.1:+6280052 | MS.gene24853:CDS |
| TGAAAGTGAAGAGTCTGGGG+TGG | 0.689292 | 8.1:+6277789 | MS.gene24853:CDS |
| TCCCTTGTCAACGATAAGCG+GGG | 0.697454 | 8.1:+6277043 | MS.gene24853:CDS |
| ACCCCGCTTATCGTTGACAA+GGG | 0.697989 | 8.1:-6277044 | None:intergenic |
| ATGTGTGTGAACTAGTGCAA+TGG | 0.703476 | 8.1:+6274824 | None:intergenic |
| GTACTATTAACACCAGCTGG+GGG | 0.704073 | 8.1:-6277505 | None:intergenic |
| GGTTTCCAGGAAACTAAACA+GGG | 0.704253 | 8.1:+6276465 | MS.gene24853:CDS |
| TAGTTCTCCAGCAAAACATG+GGG | 0.711005 | 8.1:+6275007 | MS.gene24853:CDS |
| ATACATACCTCAATGTGATG+TGG | 0.712735 | 8.1:+6283548 | MS.gene24853:CDS |
| GCCCAAGGGAGATCATAACA+TGG | 0.735920 | 8.1:+6280066 | MS.gene24853:CDS |
| TGGGTCAGTAGATGGACACG+GGG | 0.750888 | 8.1:+6278361 | MS.gene24853:CDS |
| GACAGCTTATGAGAAATACA+CGG | 0.751119 | 8.1:+6281149 | MS.gene24853:CDS |
| ATATCAGAAGAAGATCGTAG+CGG | 0.769117 | 8.1:+6280121 | MS.gene24853:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 6274839 | 6283624 | 6274839 | ID=MS.gene24853 |
| chr8.1 | mRNA | 6274839 | 6283624 | 6274839 | ID=MS.gene24853.t1;Parent=MS.gene24853 |
| chr8.1 | exon | 6274839 | 6275255 | 6274839 | ID=MS.gene24853.t1.exon1;Parent=MS.gene24853.t1 |
| chr8.1 | CDS | 6274839 | 6275255 | 6274839 | ID=cds.MS.gene24853.t1;Parent=MS.gene24853.t1 |
| chr8.1 | exon | 6275341 | 6275614 | 6275341 | ID=MS.gene24853.t1.exon2;Parent=MS.gene24853.t1 |
| chr8.1 | CDS | 6275341 | 6275614 | 6275341 | ID=cds.MS.gene24853.t1;Parent=MS.gene24853.t1 |
| chr8.1 | exon | 6276249 | 6276550 | 6276249 | ID=MS.gene24853.t1.exon3;Parent=MS.gene24853.t1 |
| chr8.1 | CDS | 6276249 | 6276550 | 6276249 | ID=cds.MS.gene24853.t1;Parent=MS.gene24853.t1 |
| chr8.1 | exon | 6276934 | 6277116 | 6276934 | ID=MS.gene24853.t1.exon4;Parent=MS.gene24853.t1 |
| chr8.1 | CDS | 6276934 | 6277116 | 6276934 | ID=cds.MS.gene24853.t1;Parent=MS.gene24853.t1 |
| chr8.1 | exon | 6277336 | 6278082 | 6277336 | ID=MS.gene24853.t1.exon5;Parent=MS.gene24853.t1 |
| chr8.1 | CDS | 6277336 | 6278082 | 6277336 | ID=cds.MS.gene24853.t1;Parent=MS.gene24853.t1 |
| chr8.1 | exon | 6278174 | 6278268 | 6278174 | ID=MS.gene24853.t1.exon6;Parent=MS.gene24853.t1 |
| chr8.1 | CDS | 6278174 | 6278268 | 6278174 | ID=cds.MS.gene24853.t1;Parent=MS.gene24853.t1 |
| chr8.1 | exon | 6278360 | 6278419 | 6278360 | ID=MS.gene24853.t1.exon7;Parent=MS.gene24853.t1 |
| chr8.1 | CDS | 6278360 | 6278419 | 6278360 | ID=cds.MS.gene24853.t1;Parent=MS.gene24853.t1 |
| chr8.1 | exon | 6278506 | 6278594 | 6278506 | ID=MS.gene24853.t1.exon8;Parent=MS.gene24853.t1 |
| chr8.1 | CDS | 6278506 | 6278594 | 6278506 | ID=cds.MS.gene24853.t1;Parent=MS.gene24853.t1 |
| chr8.1 | exon | 6279908 | 6280492 | 6279908 | ID=MS.gene24853.t1.exon9;Parent=MS.gene24853.t1 |
| chr8.1 | CDS | 6279908 | 6280492 | 6279908 | ID=cds.MS.gene24853.t1;Parent=MS.gene24853.t1 |
| chr8.1 | exon | 6280663 | 6280737 | 6280663 | ID=MS.gene24853.t1.exon10;Parent=MS.gene24853.t1 |
| chr8.1 | CDS | 6280663 | 6280737 | 6280663 | ID=cds.MS.gene24853.t1;Parent=MS.gene24853.t1 |
| chr8.1 | exon | 6280953 | 6281023 | 6280953 | ID=MS.gene24853.t1.exon11;Parent=MS.gene24853.t1 |
| chr8.1 | CDS | 6280953 | 6281023 | 6280953 | ID=cds.MS.gene24853.t1;Parent=MS.gene24853.t1 |
| chr8.1 | exon | 6281113 | 6281170 | 6281113 | ID=MS.gene24853.t1.exon12;Parent=MS.gene24853.t1 |
| chr8.1 | CDS | 6281113 | 6281170 | 6281113 | ID=cds.MS.gene24853.t1;Parent=MS.gene24853.t1 |
| chr8.1 | exon | 6281936 | 6282194 | 6281936 | ID=MS.gene24853.t1.exon13;Parent=MS.gene24853.t1 |
| chr8.1 | CDS | 6281936 | 6282194 | 6281936 | ID=cds.MS.gene24853.t1;Parent=MS.gene24853.t1 |
| chr8.1 | exon | 6283548 | 6283624 | 6283548 | ID=MS.gene24853.t1.exon14;Parent=MS.gene24853.t1 |
| chr8.1 | CDS | 6283548 | 6283624 | 6283548 | ID=cds.MS.gene24853.t1;Parent=MS.gene24853.t1 |
| Gene Sequence |
| Protein sequence |