AlfalfaGEDB | MS.gene31336

M. sativa cultivar XinJiangDaYe / MS.gene31336

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02701.18

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31336.t1	XP_003597150.1	94.3	283	15	1	1	282	11	293	1.30E-139	505.8

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31336.t1	Q84TE9	36.2	276	91	7	16	267	33	247	1.7e-34	147.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31336.t1	G7IU51	94.3	283	15	1	1	282	11	293	9.6e-140	505.8

TFs/TRs:

Gene ID	Type	Classification
MS.gene31336.t1	TF	C2C2-Dof

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene31336	0.802899	4.51E-49	-1.69E-46
MS.gene049227	MS.gene31336	0.801782	7.65E-49	-1.69E-46
MS.gene049711	MS.gene31336	0.81109	8.33E-51	-1.69E-46
MS.gene049807	MS.gene31336	0.825949	3.55E-54	-1.69E-46
MS.gene050258	MS.gene31336	0.815815	7.62E-52	-1.69E-46
MS.gene051538	MS.gene31336	0.820937	5.27E-53	-1.69E-46
MS.gene051648	MS.gene31336	0.816508	5.33E-52	-1.69E-46
MS.gene051664	MS.gene31336	0.8029	4.50E-49	-1.69E-46
MS.gene052016	MS.gene31336	0.803657	3.14E-49	-1.69E-46
MS.gene052463	MS.gene31336	0.806091	9.74E-50	-1.69E-46
MS.gene053143	MS.gene31336	0.823564	1.29E-53	-1.69E-46
MS.gene053495	MS.gene31336	-0.815793	7.70E-52	-1.69E-46
MS.gene053536	MS.gene31336	0.837004	6.71E-57	-1.69E-46
MS.gene053538	MS.gene31336	0.837032	6.60E-57	-1.69E-46
MS.gene053945	MS.gene31336	0.808602	2.86E-50	-1.69E-46
MS.gene054142	MS.gene31336	0.801919	7.17E-49	-1.69E-46
MS.gene054178	MS.gene31336	0.835823	1.34E-56	-1.69E-46
MS.gene054824	MS.gene31336	0.804628	1.97E-49	-1.69E-46
MS.gene055220	MS.gene31336	0.80139	9.21E-49	-1.69E-46
MS.gene055221	MS.gene31336	0.803848	2.87E-49	-1.69E-46
MS.gene055386	MS.gene31336	0.821174	4.65E-53	-1.69E-46
MS.gene055513	MS.gene31336	0.814077	1.85E-51	-1.69E-46
MS.gene055537	MS.gene31336	0.803235	3.84E-49	-1.69E-46
MS.gene055764	MS.gene31336	0.809081	2.26E-50	-1.69E-46
MS.gene056169	MS.gene31336	0.807454	5.02E-50	-1.69E-46
MS.gene056308	MS.gene31336	0.80205	6.74E-49	-1.69E-46
MS.gene057082	MS.gene31336	0.834463	2.95E-56	-1.69E-46
MS.gene057102	MS.gene31336	0.811736	6.03E-51	-1.69E-46
MS.gene057329	MS.gene31336	0.806435	8.24E-50	-1.69E-46
MS.gene058492	MS.gene31336	0.805209	1.49E-49	-1.69E-46
MS.gene058649	MS.gene31336	0.83845	2.85E-57	-1.69E-46
MS.gene058668	MS.gene31336	0.816662	4.93E-52	-1.69E-46
MS.gene05894	MS.gene31336	0.835788	1.37E-56	-1.69E-46
MS.gene059424	MS.gene31336	0.837442	5.19E-57	-1.69E-46
MS.gene059778	MS.gene31336	0.860473	2.02E-63	-1.69E-46
MS.gene05985	MS.gene31336	-0.807347	5.28E-50	-1.69E-46
MS.gene060522	MS.gene31336	0.805959	1.04E-49	-1.69E-46
MS.gene060528	MS.gene31336	0.801396	9.18E-49	-1.69E-46
MS.gene061100	MS.gene31336	0.855076	8.04E-62	-1.69E-46
MS.gene061160	MS.gene31336	0.801843	7.44E-49	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31336.t1	MTR_2g093220	97.173	283	7	1	1	282	11	293	0.0	570
MS.gene31336.t1	MTR_4g461080	55.082	305	83	15	3	282	2	277	1.28e-80	244
MS.gene31336.t1	MTR_3g091820	85.294	68	10	0	19	86	32	99	6.31e-38	135
MS.gene31336.t1	MTR_1g077600	75.000	72	18	0	13	84	26	97	1.42e-35	129
MS.gene31336.t1	MTR_8g027295	63.636	99	22	3	13	106	9	98	1.60e-35	129
MS.gene31336.t1	MTR_1g077600	75.000	72	18	0	13	84	26	97	1.63e-35	129
MS.gene31336.t1	MTR_3g090430	77.465	71	16	0	14	84	35	105	1.58e-33	125
MS.gene31336.t1	MTR_3g077750	53.333	135	50	5	1	130	29	155	2.36e-33	124
MS.gene31336.t1	MTR_4g063780	65.217	92	25	2	12	96	57	148	3.31e-33	124
MS.gene31336.t1	MTR_4g022370	55.263	114	42	1	12	116	64	177	7.58e-33	124
MS.gene31336.t1	MTR_2g096740	54.206	107	40	2	3	109	36	133	9.05e-33	122
MS.gene31336.t1	MTR_2g096740	54.206	107	40	2	3	109	51	148	1.19e-32	122
MS.gene31336.t1	MTR_8g068210	58.621	87	36	0	19	105	21	107	1.82e-31	119
MS.gene31336.t1	MTR_8g479350	62.963	81	30	0	27	107	65	145	5.78e-31	118
MS.gene31336.t1	MTR_4g088580	70.423	71	21	0	32	102	57	127	6.68e-31	119
MS.gene31336.t1	MTR_1g056810	90.741	54	5	0	31	84	13	66	1.28e-30	116
MS.gene31336.t1	MTR_5g031440	83.636	55	9	0	26	80	39	93	1.16e-29	114
MS.gene31336.t1	MTR_7g059400	67.123	73	24	0	12	84	58	130	1.34e-29	115
MS.gene31336.t1	MTR_8g079060	67.568	74	23	1	14	86	12	85	5.15e-29	110
MS.gene31336.t1	MTR_2g014060	79.310	58	9	1	24	81	22	76	1.19e-28	112
MS.gene31336.t1	MTR_7g024670	73.846	65	17	0	29	93	76	140	3.03e-28	111
MS.gene31336.t1	MTR_3g435480	67.123	73	23	1	16	88	123	194	2.69e-27	110
MS.gene31336.t1	MTR_8g015840	68.056	72	22	1	18	88	8	79	3.38e-27	105
MS.gene31336.t1	MTR_4g109980	79.245	53	11	0	28	80	38	90	7.54e-27	107
MS.gene31336.t1	MTR_2g013370	77.193	57	12	1	28	84	44	99	1.35e-26	105
MS.gene31336.t1	MTR_4g089095	78.947	57	11	1	28	84	48	103	1.88e-26	105
MS.gene31336.t1	MTR_4g089095	78.947	57	11	1	28	84	14	69	2.27e-26	104
MS.gene31336.t1	MTR_2g059540	86.000	50	7	0	29	78	30	79	2.27e-26	103
MS.gene31336.t1	MTR_5g041420	65.217	69	23	1	18	86	127	194	4.23e-26	105
MS.gene31336.t1	MTR_7g010950	58.333	84	27	1	11	86	108	191	4.24e-26	107
MS.gene31336.t1	MTR_2g014170	84.000	50	8	0	29	78	44	93	5.81e-26	104
MS.gene31336.t1	MTR_8g044220	61.429	70	26	1	16	85	105	173	4.22e-25	103
MS.gene31336.t1	MTR_4g082060	64.615	65	23	0	19	83	111	175	4.65e-25	103
MS.gene31336.t1	MTR_6g027460	42.742	124	67	2	5	128	72	191	1.10e-24	102
MS.gene31336.t1	MTR_6g012450	66.129	62	21	0	25	86	131	192	1.92e-24	102
MS.gene31336.t1	MTR_6g027450	51.250	80	38	1	5	84	65	143	2.30e-24	100
MS.gene31336.t1	MTR_7g086780	66.102	59	20	0	25	83	94	152	3.23e-24	101
MS.gene31336.t1	MTR_2g016030	68.421	57	18	0	27	83	44	100	1.62e-23	94.4
MS.gene31336.t1	MTR_5g041380	60.000	75	30	0	26	100	123	197	8.01e-23	96.7
MS.gene31336.t1	MTR_5g041400	60.811	74	29	0	26	99	115	188	2.63e-22	95.1
MS.gene31336.t1	MTR_5g041530	60.606	66	25	1	18	83	129	193	3.86e-21	92.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31336.t1	AT2G28510	44.322	273	104	13	28	282	46	288	6.95e-46	156
MS.gene31336.t1	AT5G60200	36.000	275	93	8	16	267	33	247	6.05e-44	150
MS.gene31336.t1	AT3G45610	33.333	291	113	9	1	267	1	234	2.72e-38	135
MS.gene31336.t1	AT4G24060	83.333	66	11	0	19	84	42	107	1.03e-35	131
MS.gene31336.t1	AT3G55370	65.263	95	27	2	2	95	52	141	8.67e-35	128
MS.gene31336.t1	AT3G55370	65.263	95	27	2	2	95	97	186	8.77e-35	129
MS.gene31336.t1	AT3G55370	65.263	95	27	2	2	95	52	141	1.13e-34	128
MS.gene31336.t1	AT3G61850	69.048	84	22	1	23	106	55	134	4.20e-34	125
MS.gene31336.t1	AT3G61850	69.048	84	22	1	23	106	55	134	4.20e-34	125
MS.gene31336.t1	AT3G61850	69.048	84	22	1	23	106	67	146	5.25e-34	125
MS.gene31336.t1	AT3G61850	69.048	84	22	1	23	106	55	134	6.24e-34	125
MS.gene31336.t1	AT3G61850	69.048	84	22	1	23	106	67	146	6.74e-34	125
MS.gene31336.t1	AT1G64620	46.067	178	87	3	19	188	38	214	6.70e-33	124
MS.gene31336.t1	AT2G37590	68.919	74	23	0	12	85	71	144	2.14e-32	122
MS.gene31336.t1	AT5G02460	81.967	61	11	0	24	84	89	149	5.90e-32	122
MS.gene31336.t1	AT5G60850	76.056	71	13	1	28	94	49	119	8.11e-32	120
MS.gene31336.t1	AT5G65590	66.265	83	24	1	13	91	20	102	3.35e-31	118
MS.gene31336.t1	AT2G46590	61.864	118	39	3	19	132	71	186	6.46e-31	119
MS.gene31336.t1	AT2G46590	61.864	118	39	3	19	132	59	174	6.53e-31	118
MS.gene31336.t1	AT3G52440	59.406	101	32	2	27	127	22	113	1.06e-30	115
MS.gene31336.t1	AT3G52440	59.406	101	32	2	27	127	41	132	1.36e-30	115
MS.gene31336.t1	AT1G51700	57.895	95	36	2	10	103	16	107	4.31e-30	112
MS.gene31336.t1	AT4G00940	80.000	60	12	0	25	84	63	122	6.16e-30	114
MS.gene31336.t1	AT4G00940	80.000	60	12	0	25	84	63	122	6.16e-30	114
MS.gene31336.t1	AT4G00940	80.000	60	12	0	25	84	63	122	6.16e-30	114
MS.gene31336.t1	AT1G07640	57.647	85	35	1	1	84	47	131	1.14e-29	114
MS.gene31336.t1	AT2G28810	80.357	56	11	0	26	81	73	128	1.36e-29	114
MS.gene31336.t1	AT1G07640	57.647	85	35	1	1	84	55	139	1.39e-29	114
MS.gene31336.t1	AT1G21340	82.456	57	10	0	29	85	37	93	1.86e-29	112
MS.gene31336.t1	AT2G28810	80.357	56	11	0	26	81	90	145	2.30e-29	114
MS.gene31336.t1	AT1G07640	65.333	75	25	1	11	84	1	75	4.64e-29	112
MS.gene31336.t1	AT5G62940	75.410	61	15	0	20	80	63	123	6.05e-29	113
MS.gene31336.t1	AT1G28310	81.818	55	10	0	30	84	27	81	7.45e-28	109
MS.gene31336.t1	AT1G28310	81.818	55	10	0	30	84	51	105	1.00e-27	109
MS.gene31336.t1	AT3G21270	84.906	53	8	0	30	82	29	81	2.25e-27	105
MS.gene31336.t1	AT5G66940	67.606	71	22	1	22	92	25	94	2.36e-27	106
MS.gene31336.t1	AT4G21050	66.667	69	21	1	23	91	19	85	4.45e-27	105
MS.gene31336.t1	AT4G38000	67.692	65	20	1	20	83	31	95	6.00e-27	105
MS.gene31336.t1	AT1G47655	77.193	57	13	0	22	78	21	77	1.15e-26	103
MS.gene31336.t1	AT5G62430	61.333	75	28	1	16	89	39	113	1.42e-26	105
MS.gene31336.t1	AT3G50410	66.154	65	22	0	22	86	22	86	3.00e-26	103
MS.gene31336.t1	AT3G47500	69.355	62	19	0	25	86	105	166	2.05e-25	105
MS.gene31336.t1	AT5G39660	58.333	84	29	2	12	95	124	201	3.10e-25	104
MS.gene31336.t1	AT5G39660	58.333	84	29	2	12	95	124	201	3.10e-25	104
MS.gene31336.t1	AT5G39660	58.333	84	29	2	12	95	124	201	3.10e-25	104
MS.gene31336.t1	AT1G69570	67.797	59	19	0	25	83	127	185	2.65e-24	101
MS.gene31336.t1	AT1G26790	54.054	74	34	0	10	83	91	164	3.35e-24	100
MS.gene31336.t1	AT4G21080	47.619	105	54	1	7	110	1	105	5.64e-24	97.8
MS.gene31336.t1	AT2G34140	64.407	59	21	0	25	83	53	111	7.32e-24	95.5
MS.gene31336.t1	AT1G29160	64.407	59	21	0	25	83	57	115	1.52e-23	94.7
MS.gene31336.t1	AT4G21040	47.619	105	54	1	7	110	1	105	1.09e-22	94.0
MS.gene31336.t1	AT4G21030	41.176	102	56	2	7	107	1	99	6.33e-15	72.0

Find 69 sgRNAs with CRISPR-Local

Find 74 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTTAAACCATGGATTTA+TGG	0.140552	2.4:-8548439	MS.gene31336:CDS
GCTTGTTCTGGTTGAGGTTT+TGG	0.170758	2.4:+8548843	None:intergenic
ATCCATAAATCCATGGTTTA+AGG	0.182491	2.4:+8548437	None:intergenic
ATTCCTTAGGGTTCCTCCTT+TGG	0.285324	2.4:+8548713	None:intergenic
GTTTCAAATCTAGGAAATTC+AGG	0.292607	2.4:-8548477	MS.gene31336:CDS
ATTAGAAGTGGATTATTTCT+TGG	0.296220	2.4:-8548411	MS.gene31336:CDS
GGACAGTTCAAAGCTTGTTC+TGG	0.303186	2.4:+8548831	None:intergenic
GAATGAGGGAGATTGTTAAA+TGG	0.311392	2.4:+8548591	None:intergenic
GTTGTTATAGTAACAGAATT+TGG	0.321643	2.4:+8548788	None:intergenic
GCAAGACCAAGTTGGAATAA+TGG	0.324229	2.4:-8548126	MS.gene31336:CDS
AGTGGATTATTTCTTGGAAA+TGG	0.336042	2.4:-8548405	MS.gene31336:CDS
GGGTTTCCATGGCAGCTAAA+TGG	0.341098	2.4:-8548177	MS.gene31336:CDS
ATGTATGGTGTGTATGGAAA+TGG	0.354795	2.4:-8548354	MS.gene31336:CDS
GCAAATCTTGTAGAAGGTAT+TGG	0.358390	2.4:-8548737	MS.gene31336:CDS
GAACATGATGTTTCAAATCT+AGG	0.360530	2.4:-8548486	MS.gene31336:CDS
CAAGATTTGCAGAAATATCT+TGG	0.375372	2.4:+8548750	None:intergenic
ATTGTTAATTTCTTGATCAT+AGG	0.377525	2.4:+8548257	None:intergenic
AAAGCAATCATGTGGACAAA+TGG	0.379363	2.4:-8548517	MS.gene31336:CDS
ATTTCTGCAAATCTTGTAGA+AGG	0.388906	2.4:-8548743	MS.gene31336:CDS
AATGAGGGAGATTGTTAAAT+GGG	0.410826	2.4:+8548592	None:intergenic
TCATCAATGGAAAACATGTT+AGG	0.412061	2.4:-8548894	MS.gene31336:CDS
TTGTTAATTTCTTGATCATA+GGG	0.429595	2.4:+8548258	None:intergenic
CAGAATATGTATGGTGTGTA+TGG	0.444454	2.4:-8548360	MS.gene31336:CDS
TTCAAAGCTTGTTCTGGTTG+AGG	0.444926	2.4:+8548837	None:intergenic
CACCAACAGGAACATTCCTT+AGG	0.445109	2.4:+8548700	None:intergenic
TTGTTAAATGGGTTGAGATT+TGG	0.446377	2.4:+8548603	None:intergenic
TGTATGGTGTGTATGGAAAT+GGG	0.450678	2.4:-8548353	MS.gene31336:CDS
AAGCAATCATGTGGACAAAT+GGG	0.452916	2.4:-8548516	MS.gene31336:CDS
TAATGCTAATGCAAAATCAT+TGG	0.457564	2.4:+8548551	None:intergenic
GTGTTGGTTGAGTTGCATCT+TGG	0.458480	2.4:+8548810	None:intergenic
AATAATGTTCAGAATATGTA+TGG	0.460682	2.4:-8548369	MS.gene31336:CDS
TTTCTGCATCCACCACCAAC+AGG	0.469608	2.4:+8548687	None:intergenic
GTTCCTCCATTTAGCTGCCA+TGG	0.475903	2.4:+8548171	None:intergenic
ATGCAAATAACAATGCTTGT+GGG	0.493320	2.4:-8548302	MS.gene31336:CDS
AATCATTCAACCTTAAACCA+TGG	0.503221	2.4:-8548447	MS.gene31336:CDS
AATGTCGAGCCAATCATCAA+TGG	0.508256	2.4:-8548907	MS.gene31336:CDS
GACAATGGTGAAGTAAATAG+TGG	0.512707	2.4:-8548330	MS.gene31336:CDS
AGGAATGTTCCTGTTGGTGG+TGG	0.512948	2.4:-8548696	MS.gene31336:CDS
TTTATGGATGCAATTAGAAG+TGG	0.515360	2.4:-8548423	MS.gene31336:CDS
CTAAGGAATGTTCCTGTTGG+TGG	0.527080	2.4:-8548699	MS.gene31336:CDS
ATAGTAACAGAATTTGGTGT+TGG	0.529356	2.4:+8548794	None:intergenic
TAATTGCATCCATAAATCCA+TGG	0.534717	2.4:+8548430	None:intergenic
GTTTCACATCTCCTTGGCAA+GGG	0.535336	2.4:-8548104	MS.gene31336:CDS
ACCAACAGGAACATTCCTTA+GGG	0.541748	2.4:+8548701	None:intergenic
GGTTTCACATCTCCTTGGCA+AGG	0.542507	2.4:-8548105	MS.gene31336:CDS
AATGCAAATAACAATGCTTG+TGG	0.543604	2.4:-8548303	MS.gene31336:CDS
ATAATGGTTTCACATCTCCT+TGG	0.549531	2.4:-8548110	MS.gene31336:CDS
TATGATCATAAGATGAATGA+GGG	0.553710	2.4:+8548577	None:intergenic
GTGAAACCATTATTCCAACT+TGG	0.559949	2.4:+8548120	None:intergenic
AGCAAGAAATGTGCAGTGGA+AGG	0.565157	2.4:-8548230	MS.gene31336:CDS
TTATGATCATAAGATGAATG+AGG	0.565287	2.4:+8548576	None:intergenic
TTGAATCTGCAAGACCAAGT+TGG	0.568555	2.4:-8548134	MS.gene31336:CDS
ACCCTAAGGAATGTTCCTGT+TGG	0.579058	2.4:-8548702	MS.gene31336:CDS
TGCAAATAACAATGCTTGTG+GGG	0.582187	2.4:-8548301	MS.gene31336:CDS
CATCATCATCATCTTCAAAG+AGG	0.582519	2.4:-8548647	MS.gene31336:CDS
TGTAGAAGGTATTGGACCAA+AGG	0.585230	2.4:-8548729	MS.gene31336:CDS
CTCTTTGAAGATGATGATGA+TGG	0.589822	2.4:+8548648	None:intergenic
ATCATCATCATCTTCAAAGA+GGG	0.591464	2.4:-8548646	MS.gene31336:CDS
GGACCAAAGGAGGAACCCTA+AGG	0.594931	2.4:-8548716	MS.gene31336:CDS
GCAAGAAATGTGCAGTGGAA+GGG	0.598256	2.4:-8548229	MS.gene31336:CDS
GTGTATGGAAATGGGGACAA+TGG	0.598902	2.4:-8548345	MS.gene31336:CDS
GCTAAATGGAGGAACAAACA+TGG	0.611119	2.4:-8548163	MS.gene31336:CDS
AGAAGGTATTGGACCAAAGG+AGG	0.622045	2.4:-8548726	MS.gene31336:CDS
CTATGAAGAAGCCCTTGCCA+AGG	0.626241	2.4:+8548093	None:intergenic
GTATGGTGTGTATGGAAATG+GGG	0.629075	2.4:-8548352	MS.gene31336:CDS
AGGCTTCAAAAGCAATCATG+TGG	0.635965	2.4:-8548525	MS.gene31336:CDS
TTTCCATGGCAGCTAAATGG+AGG	0.645564	2.4:-8548174	MS.gene31336:CDS
CTAAATGGAGGAACAAACAT+GGG	0.651200	2.4:-8548162	MS.gene31336:CDS
GTGAAGCAAGAAATGTGCAG+TGG	0.683660	2.4:-8548234	MS.gene31336:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATAATGTTCAGAATATGTA+TGG	-	chr2.4:8548617-8548636	MS.gene31336:CDS	20.0%
!!	ATTGTTAATTTCTTGATCAT+AGG	+	chr2.4:8548732-8548751	None:intergenic	20.0%
!!	TTGTTAATTTCTTGATCATA+GGG	+	chr2.4:8548731-8548750	None:intergenic	20.0%
!!!	ATTAGTGAAAGTAAAGTTTT+TGG	-	chr2.4:8548785-8548804	MS.gene31336:CDS	20.0%
!	GTTGTTATAGTAACAGAATT+TGG	+	chr2.4:8548201-8548220	None:intergenic	25.0%
!	TAATGCTAATGCAAAATCAT+TGG	+	chr2.4:8548438-8548457	None:intergenic	25.0%
!	TATGATCATAAGATGAATGA+GGG	+	chr2.4:8548412-8548431	None:intergenic	25.0%
!	TTATGATCATAAGATGAATG+AGG	+	chr2.4:8548413-8548432	None:intergenic	25.0%
!!!	ATTAGAAGTGGATTATTTCT+TGG	-	chr2.4:8548575-8548594	MS.gene31336:CDS	25.0%
	AACCTTAAACCATGGATTTA+TGG	-	chr2.4:8548547-8548566	MS.gene31336:CDS	30.0%
	AATCATTCAACCTTAAACCA+TGG	-	chr2.4:8548539-8548558	MS.gene31336:CDS	30.0%
	AATGAGGGAGATTGTTAAAT+GGG	+	chr2.4:8548397-8548416	None:intergenic	30.0%
	AATGCAAATAACAATGCTTG+TGG	-	chr2.4:8548683-8548702	MS.gene31336:CDS	30.0%
	ATCATCATCATCTTCAAAGA+GGG	-	chr2.4:8548340-8548359	MS.gene31336:CDS	30.0%
	ATCCATAAATCCATGGTTTA+AGG	+	chr2.4:8548552-8548571	None:intergenic	30.0%
	ATGCAAATAACAATGCTTGT+GGG	-	chr2.4:8548684-8548703	MS.gene31336:CDS	30.0%
	ATTTCTGCAAATCTTGTAGA+AGG	-	chr2.4:8548243-8548262	MS.gene31336:CDS	30.0%
	CAAGATTTGCAGAAATATCT+TGG	+	chr2.4:8548239-8548258	None:intergenic	30.0%
	GAACATGATGTTTCAAATCT+AGG	-	chr2.4:8548500-8548519	MS.gene31336:CDS	30.0%
	GTTTCAAATCTAGGAAATTC+AGG	-	chr2.4:8548509-8548528	MS.gene31336:CDS	30.0%
	TAATTGCATCCATAAATCCA+TGG	+	chr2.4:8548559-8548578	None:intergenic	30.0%
	TCATCAATGGAAAACATGTT+AGG	-	chr2.4:8548092-8548111	MS.gene31336:CDS	30.0%
	TTTATGGATGCAATTAGAAG+TGG	-	chr2.4:8548563-8548582	MS.gene31336:CDS	30.0%
!	ATTTTGCATTAGCATTAGCT+AGG	-	chr2.4:8548441-8548460	MS.gene31336:CDS	30.0%
!!	ACATGTTTTCCATTGATGAT+TGG	+	chr2.4:8548091-8548110	None:intergenic	30.0%
!!	AGTGAAAGTAAAGTTTTTGG+TGG	-	chr2.4:8548788-8548807	MS.gene31336:CDS	30.0%
!!	AGTGGATTATTTCTTGGAAA+TGG	-	chr2.4:8548581-8548600	MS.gene31336:CDS	30.0%
!!	ATAGTAACAGAATTTGGTGT+TGG	+	chr2.4:8548195-8548214	None:intergenic	30.0%
!!	TTGTTAAATGGGTTGAGATT+TGG	+	chr2.4:8548386-8548405	None:intergenic	30.0%
!!!	GTGAAAGTAAAGTTTTTGGT+GGG	-	chr2.4:8548789-8548808	MS.gene31336:CDS	30.0%
	AAAGCAATCATGTGGACAAA+TGG	-	chr2.4:8548469-8548488	MS.gene31336:CDS	35.0%
	AAGCAATCATGTGGACAAAT+GGG	-	chr2.4:8548470-8548489	MS.gene31336:CDS	35.0%
	ATAATGGTTTCACATCTCCT+TGG	-	chr2.4:8548876-8548895	MS.gene31336:CDS	35.0%
	ATGTATGGTGTGTATGGAAA+TGG	-	chr2.4:8548632-8548651	MS.gene31336:CDS	35.0%
	CAGAATATGTATGGTGTGTA+TGG	-	chr2.4:8548626-8548645	MS.gene31336:CDS	35.0%
	CATCATCATCATCTTCAAAG+AGG	-	chr2.4:8548339-8548358	MS.gene31336:CDS	35.0%
	CTAAATGGAGGAACAAACAT+GGG	-	chr2.4:8548824-8548843	MS.gene31336:CDS	35.0%
	GAATGAGGGAGATTGTTAAA+TGG	+	chr2.4:8548398-8548417	None:intergenic	35.0%
	GACAATGGTGAAGTAAATAG+TGG	-	chr2.4:8548656-8548675	MS.gene31336:CDS	35.0%
	GTGAAACCATTATTCCAACT+TGG	+	chr2.4:8548869-8548888	None:intergenic	35.0%
	TGCAAATAACAATGCTTGTG+GGG	-	chr2.4:8548685-8548704	MS.gene31336:CDS	35.0%
	TGTATGGTGTGTATGGAAAT+GGG	-	chr2.4:8548633-8548652	MS.gene31336:CDS	35.0%
!	CTCTTTGAAGATGATGATGA+TGG	+	chr2.4:8548341-8548360	None:intergenic	35.0%
!	GCAAATCTTGTAGAAGGTAT+TGG	-	chr2.4:8548249-8548268	MS.gene31336:CDS	35.0%
	ACCAACAGGAACATTCCTTA+GGG	+	chr2.4:8548288-8548307	None:intergenic	40.0%
	AGGCTTCAAAAGCAATCATG+TGG	-	chr2.4:8548461-8548480	MS.gene31336:CDS	40.0%
	GCTAAATGGAGGAACAAACA+TGG	-	chr2.4:8548823-8548842	MS.gene31336:CDS	40.0%
	GTATGGTGTGTATGGAAATG+GGG	-	chr2.4:8548634-8548653	MS.gene31336:CDS	40.0%
	TTGAATCTGCAAGACCAAGT+TGG	-	chr2.4:8548852-8548871	MS.gene31336:CDS	40.0%
!	GCAAGACCAAGTTGGAATAA+TGG	-	chr2.4:8548860-8548879	MS.gene31336:CDS	40.0%
!	TTCAAAGCTTGTTCTGGTTG+AGG	+	chr2.4:8548152-8548171	None:intergenic	40.0%
!!	TGTAGAAGGTATTGGACCAA+AGG	-	chr2.4:8548257-8548276	MS.gene31336:CDS	40.0%
!!!	AAGTTTTTGGTGGGTTTCCA+TGG	-	chr2.4:8548798-8548817	MS.gene31336:CDS	40.0%
	ACCCTAAGGAATGTTCCTGT+TGG	-	chr2.4:8548284-8548303	MS.gene31336:CDS	45.0%
	AGCAAGAAATGTGCAGTGGA+AGG	-	chr2.4:8548756-8548775	MS.gene31336:CDS	45.0%
	ATTCCTTAGGGTTCCTCCTT+TGG	+	chr2.4:8548276-8548295	None:intergenic	45.0%
	CACCAACAGGAACATTCCTT+AGG	+	chr2.4:8548289-8548308	None:intergenic	45.0%
	CTAAGGAATGTTCCTGTTGG+TGG	-	chr2.4:8548287-8548306	MS.gene31336:CDS	45.0%
	GCAAGAAATGTGCAGTGGAA+GGG	-	chr2.4:8548757-8548776	MS.gene31336:CDS	45.0%
	GTGAAGCAAGAAATGTGCAG+TGG	-	chr2.4:8548752-8548771	MS.gene31336:CDS	45.0%
	GTGTATGGAAATGGGGACAA+TGG	-	chr2.4:8548641-8548660	MS.gene31336:CDS	45.0%
	GTTTCACATCTCCTTGGCAA+GGG	-	chr2.4:8548882-8548901	MS.gene31336:CDS	45.0%
	TTTCCATGGCAGCTAAATGG+AGG	-	chr2.4:8548812-8548831	MS.gene31336:CDS	45.0%
!	GGACAGTTCAAAGCTTGTTC+TGG	+	chr2.4:8548158-8548177	None:intergenic	45.0%
!!	AGAAGGTATTGGACCAAAGG+AGG	-	chr2.4:8548260-8548279	MS.gene31336:CDS	45.0%
!!	GCTTGTTCTGGTTGAGGTTT+TGG	+	chr2.4:8548146-8548165	None:intergenic	45.0%
!!	GTGTTGGTTGAGTTGCATCT+TGG	+	chr2.4:8548179-8548198	None:intergenic	45.0%
	CTATGAAGAAGCCCTTGCCA+AGG	+	chr2.4:8548896-8548915	None:intergenic	50.0%
	GGGTTTCCATGGCAGCTAAA+TGG	-	chr2.4:8548809-8548828	MS.gene31336:CDS	50.0%
	GGTTTCACATCTCCTTGGCA+AGG	-	chr2.4:8548881-8548900	MS.gene31336:CDS	50.0%
	GTTCCTCCATTTAGCTGCCA+TGG	+	chr2.4:8548818-8548837	None:intergenic	50.0%
	TTTCTGCATCCACCACCAAC+AGG	+	chr2.4:8548302-8548321	None:intergenic	50.0%
!	AGGAATGTTCCTGTTGGTGG+TGG	-	chr2.4:8548290-8548309	MS.gene31336:CDS	50.0%
	GGACCAAAGGAGGAACCCTA+AGG	-	chr2.4:8548270-8548289	MS.gene31336:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	8548080	8548928	8548080	ID=MS.gene31336
chr2.4	mRNA	8548080	8548928	8548080	ID=MS.gene31336.t1;Parent=MS.gene31336
chr2.4	exon	8548080	8548928	8548080	ID=MS.gene31336.t1.exon1;Parent=MS.gene31336.t1
chr2.4	CDS	8548080	8548928	8548080	ID=cds.MS.gene31336.t1;Parent=MS.gene31336.t1

Gene Sequence

>MS.gene31336

ATGTCGAGCCAATCATCAATGGAAAACATGTTAGGTTGCTCAAAAGATGAGCAAGAAAGAAAGCCAAAACCTCAACCAGAACAAGCTTTGAACTGTCCAAGATGCAACTCAACCAACACCAAATTCTGTTACTATAACAACTATAGTCTTACTCAGCCAAGATATTTCTGCAAATCTTGTAGAAGGTATTGGACCAAAGGAGGAACCCTAAGGAATGTTCCTGTTGGTGGTGGATGCAGAAAAAACAAAAGATCATCACCATCATCATCATCTTCAAAGAGGGTTCAAGATCAAACATTCACACCAAATCTCAACCCATTTAACAATCTCCCTCATTCATCTTATGATCATAATTCCAATGATTTTGCATTAGCATTAGCTAGGCTTCAAAAGCAATCATGTGGACAAATGGGTTATGATGAACATGATGTTTCAAATCTAGGAAATTCAGGTATGAACAATCATTCAACCTTAAACCATGGATTTATGGATGCAATTAGAAGTGGATTATTTCTTGGAAATGGACTACATTATAATAATAATGTTCAGAATATGTATGGTGTGTATGGAAATGGGGACAATGGTGAAGTAAATAGTGGTAACAATGCAAATAACAATGCTTGTGGGGTTAGTGAAGAAATGATGTTTCCCTATGATCAAGAAATTAACAATGTGAAGCAAGAAATGTGCAGTGGAAGGGAACAAATTAGTGAAAGTAAAGTTTTTGGTGGGTTTCCATGGCAGCTAAATGGAGGAACAAACATGGGTGAAGTTGAATCTGCAAGACCAAGTTGGAATAATGGTTTCACATCTCCTTGGCAAGGGCTTCTTCATAGTCCCTTAATGTAG

Protein sequence

>MS.gene31336.t1

MSSQSSMENMLGCSKDEQERKPKPQPEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSPSSSSSKRVQDQTFTPNLNPFNNLPHSSYDHNSNDFALALARLQKQSCGQMGYDEHDVSNLGNSGMNNHSTLNHGFMDAIRSGLFLGNGLHYNNNVQNMYGVYGNGDNGEVNSGNNANNNACGVSEEMMFPYDQEINNVKQEMCSGREQISESKVFGGFPWQLNGGTNMGEVESARPSWNNGFTSPWQGLLHSPLM