Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060878.t1 | XP_003597861.1 | 97.3 | 259 | 7 | 0 | 1 | 259 | 1 | 259 | 2.60E-129 | 471.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060878.t1 | O22224 | 74.6 | 260 | 63 | 3 | 1 | 258 | 1 | 259 | 2.5e-96 | 353.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060878.t1 | Q2HVW5 | 97.3 | 259 | 7 | 0 | 1 | 259 | 1 | 259 | 1.9e-129 | 471.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052661 | MS.gene060878 | 0.827667 | 1.38E-54 | -1.69E-46 |
| MS.gene052662 | MS.gene060878 | 0.82345 | 1.38E-53 | -1.69E-46 |
| MS.gene052663 | MS.gene060878 | 0.832806 | 7.66E-56 | -1.69E-46 |
| MS.gene060878 | MS.gene36230 | 0.950934 | 5.88E-109 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060878.t1 | MTR_2g103370 | 97.297 | 259 | 7 | 0 | 1 | 259 | 1 | 259 | 1.31e-178 | 513 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060878.t1 | AT2G41620 | 74.615 | 260 | 63 | 3 | 1 | 258 | 1 | 259 | 9.50e-129 | 385 |
| MS.gene060878.t1 | AT3G57350 | 73.256 | 258 | 64 | 4 | 1 | 256 | 1 | 255 | 1.84e-124 | 374 |
Find 64 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTCAGTTCCCTCCTCTTC+AGG | 0.194338 | 2.1:+2438298 | MS.gene060878:CDS |
| AGTAGGGGACTTACTTTAAA+TGG | 0.241555 | 2.1:-2441516 | None:intergenic |
| CCCTGGTCAAATTGTGTCTA+TGG | 0.277801 | 2.1:+2441362 | MS.gene060878:CDS |
| CAAGGGTGCATACGAAAGTT+TGG | 0.278688 | 2.1:+2442106 | MS.gene060878:CDS |
| TGATTATATGATGAAAGTTT+TGG | 0.290773 | 2.1:+2440376 | MS.gene060878:CDS |
| TAGACCCATCGCAGATAAAA+AGG | 0.313748 | 2.1:+2441437 | MS.gene060878:CDS |
| GGTTATCCTTCTGAGCTTCC+TGG | 0.316241 | 2.1:-2440340 | None:intergenic |
| TCTACTCCACAAGTCTCTTC+TGG | 0.319960 | 2.1:+2441387 | MS.gene060878:CDS |
| CGCTTCAGCTCTTACAGTCT+TGG | 0.344037 | 2.1:-2438571 | None:intergenic |
| AAAGATATGGCACCTTGTTC+AGG | 0.349423 | 2.1:+2442166 | MS.gene060878:CDS |
| TCGACGCTTGTTGCCTCAAC+AGG | 0.349996 | 2.1:-2439786 | None:intergenic |
| CACTGTTGTTTAGAGGAACT+TGG | 0.371971 | 2.1:+2438515 | MS.gene060878:intron |
| TCGTTCTCAGGTTCATGAAA+TGG | 0.382869 | 2.1:+2440301 | MS.gene060878:intron |
| TTTGAAGTCATTTGAGTTGA+AGG | 0.396716 | 2.1:+2439252 | MS.gene060878:CDS |
| AAGGGTGCATACGAAAGTTT+GGG | 0.396800 | 2.1:+2442107 | MS.gene060878:CDS |
| CAGTAACGATGCGAAAGATA+TGG | 0.400785 | 2.1:+2442153 | MS.gene060878:CDS |
| CTGAATAGAGCAAGGCAGTC+TGG | 0.408430 | 2.1:+2441489 | MS.gene060878:CDS |
| ATAGCTTGCCGCAACTTTCA+AGG | 0.420161 | 2.1:+2442088 | MS.gene060878:intron |
| AGCGGCTTGTTCGAGAAGCT+TGG | 0.447832 | 2.1:-2438270 | None:intergenic |
| GTGAAGTAGATCGGTCCAAC+TGG | 0.454319 | 2.1:-2438240 | None:intergenic |
| TTAGCAATCATGTTTGTCCT+TGG | 0.468677 | 2.1:-2441321 | None:intergenic |
| AGCAATGTGGGTGCCCGCCC+TGG | 0.473304 | 2.1:+2441345 | MS.gene060878:CDS |
| AAGCTCAGAAGGATAACCTT+AGG | 0.474420 | 2.1:+2440345 | MS.gene060878:CDS |
| GGCAATGGTCTCTGCCGTCC+AGG | 0.496524 | 2.1:+2440322 | MS.gene060878:CDS |
| TGCGATGGGTCTACTAGTCA+TGG | 0.505854 | 2.1:-2441427 | None:intergenic |
| ATTTCCTTCAGAGTTTAAGC+AGG | 0.532379 | 2.1:+2441286 | MS.gene060878:CDS |
| GGCTTGTTCGAGAAGCTTGG+AGG | 0.534973 | 2.1:-2438267 | None:intergenic |
| AAATCCTGCTTAAACTCTGA+AGG | 0.537989 | 2.1:-2441290 | None:intergenic |
| TGCCGTCCAGGAAGCTCAGA+AGG | 0.542467 | 2.1:+2440334 | MS.gene060878:CDS |
| GGATAAATCTTCGTTCGCCA+TGG | 0.543632 | 2.1:-2438219 | None:intergenic |
| AGACACAATTTGACCAGGGC+GGG | 0.546301 | 2.1:-2441358 | None:intergenic |
| AGGGAACTGAGCGGAAGGAG+CGG | 0.547144 | 2.1:-2438288 | None:intergenic |
| TATAATCATTGAAACTCCTA+AGG | 0.553720 | 2.1:-2440361 | None:intergenic |
| CGTCGAAGAGTATCTGCAGC+AGG | 0.556391 | 2.1:+2439803 | MS.gene060878:CDS |
| TAAATGCAGAGCAGCTTGCA+AGG | 0.557101 | 2.1:+2439227 | MS.gene060878:CDS |
| TAGCTTGCCGCAACTTTCAA+GGG | 0.559302 | 2.1:+2442089 | MS.gene060878:intron |
| GTATGCACCCTTGAAAGTTG+CGG | 0.563942 | 2.1:-2442096 | None:intergenic |
| ACAAGTCTCTTCTGGTAGCA+TGG | 0.566207 | 2.1:+2441395 | MS.gene060878:CDS |
| AGAGTACCTAGTTGCAGCAA+TGG | 0.566795 | 2.1:-2438604 | None:intergenic |
| ATTGAGAGAACCTGAAGAGG+AGG | 0.572086 | 2.1:-2438308 | None:intergenic |
| ATCCTTCTGAGCTTCCTGGA+CGG | 0.581007 | 2.1:-2440336 | None:intergenic |
| ACCATAGACACAATTTGACC+AGG | 0.583473 | 2.1:-2441363 | None:intergenic |
| ATACAGGCTTCTTGCTCGTG+AGG | 0.588254 | 2.1:+2439201 | MS.gene060878:intron |
| CGAACGAAGATTTATCCAGT+TGG | 0.592391 | 2.1:+2438225 | MS.gene060878:CDS |
| CACAGTCCATTGCTGCAACT+AGG | 0.595342 | 2.1:+2438598 | MS.gene060878:CDS |
| TACAGGCTTCTTGCTCGTGA+GGG | 0.595779 | 2.1:+2439202 | MS.gene060878:intron |
| GAGATTGAGAGAACCTGAAG+AGG | 0.598963 | 2.1:-2438311 | None:intergenic |
| GCGATGGGTCTACTAGTCAT+GGG | 0.603772 | 2.1:-2441426 | None:intergenic |
| GGAGGAAGAGTGAAGTAGAT+CGG | 0.609858 | 2.1:-2438249 | None:intergenic |
| AGAGGAGGGAACTGAGCGGA+AGG | 0.613962 | 2.1:-2438293 | None:intergenic |
| TCAGGTTCATGAAATGGCAA+TGG | 0.615202 | 2.1:+2440307 | MS.gene060878:intron |
| CAACAAGTACAACCTGAACA+AGG | 0.624193 | 2.1:-2442178 | None:intergenic |
| ATGATTGCTAATAGCAATGT+GGG | 0.627930 | 2.1:+2441333 | MS.gene060878:CDS |
| TTGGGCGTTGATGCTTGTGG+TGG | 0.630503 | 2.1:+2442125 | MS.gene060878:CDS |
| TTGAGAGAACCTGAAGAGGA+GGG | 0.639596 | 2.1:-2438307 | None:intergenic |
| GCAGGATTTCAACATTACCA+AGG | 0.642066 | 2.1:+2441304 | MS.gene060878:CDS |
| GTTGCAGCAATGGACTGTGA+CGG | 0.646464 | 2.1:-2438594 | None:intergenic |
| AAATGCAGAGCAGCTTGCAA+GGG | 0.647635 | 2.1:+2439228 | MS.gene060878:CDS |
| ATGCTACCAGAAGAGACTTG+TGG | 0.653180 | 2.1:-2441393 | None:intergenic |
| AGTTTGGGCGTTGATGCTTG+TGG | 0.654514 | 2.1:+2442122 | MS.gene060878:CDS |
| CATGATTGCTAATAGCAATG+TGG | 0.654831 | 2.1:+2441332 | MS.gene060878:CDS |
| CCATAGACACAATTTGACCA+GGG | 0.670943 | 2.1:-2441362 | None:intergenic |
| TAGACACAATTTGACCAGGG+CGG | 0.691604 | 2.1:-2441359 | None:intergenic |
| CTGAAGAGGAGGGAACTGAG+CGG | 0.706436 | 2.1:-2438297 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATAAAATAACAGTTAT+TGG | + | chr2.1:2440511-2440530 | MS.gene060878:intron | 10.0% |
| !! | TTTATAAAATAACAGTTATT+GGG | + | chr2.1:2440512-2440531 | MS.gene060878:intron | 10.0% |
| !!! | ATATTTGCAATTTTATAATT+GGG | + | chr2.1:2441128-2441147 | MS.gene060878:intron | 10.0% |
| !!! | GTTTTTTTTTTTTTTTGAAA+CGG | - | chr2.1:2439382-2439401 | None:intergenic | 10.0% |
| !!! | TTTCTATTCATTTTTAATAT+TGG | - | chr2.1:2440878-2440897 | None:intergenic | 10.0% |
| !! | ACATACATATAAATACAAAA+AGG | - | chr2.1:2442035-2442054 | None:intergenic | 15.0% |
| !! | ATAGAAATTGTATTATTGAT+TGG | + | chr2.1:2441630-2441649 | MS.gene060878:intron | 15.0% |
| !! | TTATAAAATAACAGTTATTG+GGG | + | chr2.1:2440513-2440532 | MS.gene060878:intron | 15.0% |
| !!! | ATTGATTTTTACTATGATTT+TGG | + | chr2.1:2438478-2438497 | MS.gene060878:intron | 15.0% |
| !!! | ATTTAAGATAGAATCAATTA+TGG | + | chr2.1:2438891-2438910 | MS.gene060878:intron | 15.0% |
| !!! | ATTTTATTGCATTGTTATAT+TGG | + | chr2.1:2441157-2441176 | MS.gene060878:intron | 15.0% |
| !!! | CATATTTGCAATTTTATAAT+TGG | + | chr2.1:2441127-2441146 | MS.gene060878:intron | 15.0% |
| !!! | TGTTTTACATATTTCTAATA+GGG | + | chr2.1:2439050-2439069 | MS.gene060878:intron | 15.0% |
| !!! | TTGATTTTTACTATGATTTT+GGG | + | chr2.1:2438479-2438498 | MS.gene060878:intron | 15.0% |
| !!! | TTGTTTTACATATTTCTAAT+AGG | + | chr2.1:2439049-2439068 | MS.gene060878:intron | 15.0% |
| !! | AAAAAAGAAGAGTGAAAAAA+TGG | - | chr2.1:2438338-2438357 | None:intergenic | 20.0% |
| !! | AAAGAATACAGAAAAAATCA+TGG | - | chr2.1:2440438-2440457 | None:intergenic | 20.0% |
| !! | ACAAGATTCTAACTAAATAA+TGG | + | chr2.1:2441743-2441762 | MS.gene060878:intron | 20.0% |
| !! | ATCAATGAAAACTATAATGT+CGG | + | chr2.1:2440004-2440023 | MS.gene060878:intron | 20.0% |
| !! | ATGTTAGTTATATAAAGGAT+AGG | - | chr2.1:2441792-2441811 | None:intergenic | 20.0% |
| !! | ATTGCAAAATATATGTTAAG+TGG | - | chr2.1:2439280-2439299 | None:intergenic | 20.0% |
| !! | ATTGTAAAAGGATTTATGTT+TGG | + | chr2.1:2438787-2438806 | MS.gene060878:intron | 20.0% |
| !! | CAAGATTCTAACTAAATAAT+GGG | + | chr2.1:2441744-2441763 | MS.gene060878:intron | 20.0% |
| !! | GAGAAATGTTAGTTATATAA+AGG | - | chr2.1:2441797-2441816 | None:intergenic | 20.0% |
| !! | TAGTTAGAATCTTGTAATTT+GGG | - | chr2.1:2441738-2441757 | None:intergenic | 20.0% |
| !! | TATTTGTTCTTGATATTATG+TGG | + | chr2.1:2441195-2441214 | MS.gene060878:intron | 20.0% |
| !! | TGTATTCTTTGTGTAATTAT+TGG | + | chr2.1:2440448-2440467 | MS.gene060878:intron | 20.0% |
| !! | TGTTAGTTATATAAAGGATA+GGG | - | chr2.1:2441791-2441810 | None:intergenic | 20.0% |
| !! | TTAGTTAGAATCTTGTAATT+TGG | - | chr2.1:2441739-2441758 | None:intergenic | 20.0% |
| !!! | AAAATTGATTTTGACATGTT+TGG | - | chr2.1:2438945-2438964 | None:intergenic | 20.0% |
| !!! | ATTTCTATTTCTCTTGAATT+TGG | - | chr2.1:2441618-2441637 | None:intergenic | 20.0% |
| !!! | TAAGTTGTTCTATTATGTTT+TGG | + | chr2.1:2438663-2438682 | MS.gene060878:intron | 20.0% |
| !!! | TACAAAATCAATTTTTGTCA+CGG | - | chr2.1:2438736-2438755 | None:intergenic | 20.0% |
| !!! | TATTTCCTTTTGAAAGTTTA+AGG | - | chr2.1:2440665-2440684 | None:intergenic | 20.0% |
| !!! | TGATTATATGATGAAAGTTT+TGG | + | chr2.1:2440376-2440395 | MS.gene060878:CDS | 20.0% |
| !!! | TGATTTTTACTATGATTTTG+GGG | + | chr2.1:2438480-2438499 | MS.gene060878:intron | 20.0% |
| !!! | TTATATTTTTGTGTGGATAT+GGG | + | chr2.1:2440692-2440711 | MS.gene060878:intron | 20.0% |
| !!! | TTGTATTATTGATTGGAATA+AGG | + | chr2.1:2441637-2441656 | MS.gene060878:intron | 20.0% |
| !!! | TTTCTATTTCTCTTGAATTT+GGG | - | chr2.1:2441617-2441636 | None:intergenic | 20.0% |
| !!! | TTTTCATGATATAACCTATT+TGG | + | chr2.1:2439524-2439543 | MS.gene060878:intron | 20.0% |
| !!! | TTTTTCACTCTTCTTTTTTT+AGG | + | chr2.1:2438339-2438358 | MS.gene060878:intron | 20.0% |
| !!! | TTTTTTTTAAGATAGTTCAG+AGG | - | chr2.1:2440089-2440108 | None:intergenic | 20.0% |
| ! | AAAAGCCTTAAACTTTCAAA+AGG | + | chr2.1:2440657-2440676 | MS.gene060878:intron | 25.0% |
| ! | AAATGAAAGCAAACTCAAAA+AGG | - | chr2.1:2439959-2439978 | None:intergenic | 25.0% |
| ! | AATATGCTTAGTTTAACATG+TGG | + | chr2.1:2441045-2441064 | MS.gene060878:intron | 25.0% |
| ! | AATTAAGTTTACATCCAGTT+AGG | - | chr2.1:2439626-2439645 | None:intergenic | 25.0% |
| ! | ACATTGAGTATCCAAATTAA+TGG | - | chr2.1:2440553-2440572 | None:intergenic | 25.0% |
| ! | AGAATTAAAGCTAAAAATCC+TGG | + | chr2.1:2438868-2438887 | MS.gene060878:intron | 25.0% |
| ! | ATTATGACAAAGGAATTGAT+GGG | + | chr2.1:2440721-2440740 | MS.gene060878:intron | 25.0% |
| ! | CATATCCACACAAAAATATA+AGG | - | chr2.1:2440693-2440712 | None:intergenic | 25.0% |
| ! | CTATGCTCATAAAAAATAAG+GGG | - | chr2.1:2440155-2440174 | None:intergenic | 25.0% |
| ! | CTTTACAAAACAACAAAAAC+AGG | - | chr2.1:2439745-2439764 | None:intergenic | 25.0% |
| ! | GCTATGCTCATAAAAAATAA+GGG | - | chr2.1:2440156-2440175 | None:intergenic | 25.0% |
| ! | GCTGAAAATAAGATATCTTA+TGG | + | chr2.1:2440594-2440613 | MS.gene060878:intron | 25.0% |
| ! | GGATTTATCGAACTATAATA+AGG | + | chr2.1:2440742-2440761 | MS.gene060878:intron | 25.0% |
| ! | GTGCATAAATTATAGTGTAA+GGG | - | chr2.1:2439445-2439464 | None:intergenic | 25.0% |
| ! | TAAAAGGATTTATGTTTGGT+TGG | + | chr2.1:2438791-2438810 | MS.gene060878:intron | 25.0% |
| ! | TAAGATAGAATCAATTATGG+AGG | + | chr2.1:2438894-2438913 | MS.gene060878:intron | 25.0% |
| ! | TAGGTTATATCATGAAAACA+AGG | - | chr2.1:2439522-2439541 | None:intergenic | 25.0% |
| ! | TATAATCATTGAAACTCCTA+AGG | - | chr2.1:2440364-2440383 | None:intergenic | 25.0% |
| ! | TATGCTCATAAAAAATAAGG+GGG | - | chr2.1:2440154-2440173 | None:intergenic | 25.0% |
| ! | TGCTATGCTCATAAAAAATA+AGG | - | chr2.1:2440157-2440176 | None:intergenic | 25.0% |
| ! | TGTCTATACAACTTAAAGTA+TGG | - | chr2.1:2439583-2439602 | None:intergenic | 25.0% |
| ! | TGTGCATAAATTATAGTGTA+AGG | - | chr2.1:2439446-2439465 | None:intergenic | 25.0% |
| ! | TTAAAAATCTGAATAGAGCA+AGG | + | chr2.1:2441481-2441500 | MS.gene060878:CDS | 25.0% |
| ! | TTATCGAACTATAATAAGGT+TGG | + | chr2.1:2440746-2440765 | MS.gene060878:intron | 25.0% |
| !! | AAAACATCTTTACCTTTTCT+TGG | + | chr2.1:2439397-2439416 | MS.gene060878:intron | 25.0% |
| !! | ATTGATTCTATCTTAAATCC+AGG | - | chr2.1:2438889-2438908 | None:intergenic | 25.0% |
| !! | ATTTTTGTGAACATTTTTGC+TGG | - | chr2.1:2439986-2440005 | None:intergenic | 25.0% |
| !! | GAATACTAGTAAGAACTTTT+GGG | - | chr2.1:2442011-2442030 | None:intergenic | 25.0% |
| !! | GATTTGGTAAACCATTAATT+TGG | + | chr2.1:2440539-2440558 | MS.gene060878:intron | 25.0% |
| !! | GGATGTAAACTTAATTTTGT+TGG | + | chr2.1:2439630-2439649 | MS.gene060878:intron | 25.0% |
| !! | GGTTAAGTTTATATGCATTT+TGG | + | chr2.1:2438360-2438379 | MS.gene060878:intron | 25.0% |
| !! | GTGTAATTATTGGTTATTAC+TGG | + | chr2.1:2440458-2440477 | MS.gene060878:intron | 25.0% |
| !! | TGAATACTAGTAAGAACTTT+TGG | - | chr2.1:2442012-2442031 | None:intergenic | 25.0% |
| !! | TTTACTTAAAAGTGAGTTGA+AGG | + | chr2.1:2438764-2438783 | MS.gene060878:intron | 25.0% |
| !! | TTTTGTAAAGACAACTTTTG+AGG | + | chr2.1:2439755-2439774 | MS.gene060878:intron | 25.0% |
| !!! | CTTATATTTTTGTGTGGATA+TGG | + | chr2.1:2440691-2440710 | MS.gene060878:intron | 25.0% |
| !!! | CTTTAGCTTTAAGAAAATGA+TGG | - | chr2.1:2439114-2439133 | None:intergenic | 25.0% |
| !!! | GTTTTCCATAATTTTGACTT+TGG | + | chr2.1:2440945-2440964 | MS.gene060878:intron | 25.0% |
| !!! | TAGCATTTAATGTTTTTGAC+AGG | + | chr2.1:2441239-2441258 | MS.gene060878:intron | 25.0% |
| !!! | TTATATGATGAAAGTTTTGG+AGG | + | chr2.1:2440379-2440398 | MS.gene060878:CDS | 25.0% |
| !!! | TTATTTTCACTGTTGTTTAG+AGG | + | chr2.1:2438508-2438527 | MS.gene060878:intron | 25.0% |
| !!! | TTTTTGCATACTTTTTGATG+AGG | + | chr2.1:2440772-2440791 | MS.gene060878:intron | 25.0% |
| AAAACAACAAAAACAGGCAA+AGG | - | chr2.1:2439739-2439758 | None:intergenic | 30.0% | |
| AAAACAATCAATCAGCCAAA+TGG | - | chr2.1:2441018-2441037 | None:intergenic | 30.0% | |
| AAACAACAAAAACAGGCAAA+GGG | - | chr2.1:2439738-2439757 | None:intergenic | 30.0% | |
| AAACAATCAATCAGCCAAAT+GGG | - | chr2.1:2441017-2441036 | None:intergenic | 30.0% | |
| AATCACAATGTTGATCTGTT+AGG | - | chr2.1:2441898-2441917 | None:intergenic | 30.0% | |
| ACAAGGAATTCTATCCAAAT+AGG | - | chr2.1:2439541-2439560 | None:intergenic | 30.0% | |
| ACATCAGGAAAGTTTATACA+AGG | - | chr2.1:2439558-2439577 | None:intergenic | 30.0% | |
| ACTTAAAGTATGGTTACATC+AGG | - | chr2.1:2439573-2439592 | None:intergenic | 30.0% | |
| AGTGATAACTAAATCCAAGA+TGG | - | chr2.1:2439857-2439876 | None:intergenic | 30.0% | |
| AGTTTGTGCAACTTTAAGTA+TGG | - | chr2.1:2439498-2439517 | None:intergenic | 30.0% | |
| ATGATTGCTAATAGCAATGT+GGG | + | chr2.1:2441333-2441352 | MS.gene060878:CDS | 30.0% | |
| ATGTTTGGTTGGATACATTT+AGG | + | chr2.1:2438802-2438821 | MS.gene060878:intron | 30.0% | |
| CATTGCCAAAGTCAAAATTA+TGG | - | chr2.1:2440953-2440972 | None:intergenic | 30.0% | |
| GAATAGTACAATCCAAGAAA+AGG | - | chr2.1:2439412-2439431 | None:intergenic | 30.0% | |
| GATTATGACAAAGGAATTGA+TGG | + | chr2.1:2440720-2440739 | MS.gene060878:intron | 30.0% | |
| GCTTATGTTCAAAATGATGT+TGG | - | chr2.1:2441961-2441980 | None:intergenic | 30.0% | |
| GTTTATTAGGACATGTATGA+TGG | - | chr2.1:2439085-2439104 | None:intergenic | 30.0% | |
| TAGATCAAAAACCTAGTAGA+TGG | + | chr2.1:2441554-2441573 | MS.gene060878:intron | 30.0% | |
| TAGGTTATATCAGGAAAACA+AGG | - | chr2.1:2439607-2439626 | None:intergenic | 30.0% | |
| TGTCACAATTCTATTCAGAA+AGG | - | chr2.1:2440264-2440283 | None:intergenic | 30.0% | |
| ! | GATGAGGATATATCCTTTTT+CGG | + | chr2.1:2440788-2440807 | MS.gene060878:intron | 30.0% |
| ! | TGAGAAATTTTCATACACAG+AGG | - | chr2.1:2440839-2440858 | None:intergenic | 30.0% |
| ! | TTTTCCTGATATAACCTAAC+TGG | + | chr2.1:2439609-2439628 | MS.gene060878:intron | 30.0% |
| !! | AAATTGCTTGTTATCCATCT+TGG | + | chr2.1:2439840-2439859 | MS.gene060878:intron | 30.0% |
| !! | AATATAGAGCTCTGAAAGTA+GGG | - | chr2.1:2441535-2441554 | None:intergenic | 30.0% |
| !! | AGCTTTAAGAAAATGATGGA+AGG | - | chr2.1:2439110-2439129 | None:intergenic | 30.0% |
| !! | CATTTAATGTTTTTGACAGG+AGG | + | chr2.1:2441242-2441261 | MS.gene060878:intron | 30.0% |
| !! | TAATATAGAGCTCTGAAAGT+AGG | - | chr2.1:2441536-2441555 | None:intergenic | 30.0% |
| !! | TCAGTCCTTATATTTTTGTG+TGG | + | chr2.1:2440685-2440704 | MS.gene060878:intron | 30.0% |
| !! | TGGTAAGTTTCTAGTTTAGT+TGG | + | chr2.1:2438683-2438702 | MS.gene060878:intron | 30.0% |
| !! | TTTGAAGTCATTTGAGTTGA+AGG | + | chr2.1:2439252-2439271 | MS.gene060878:CDS | 30.0% |
| !!! | CTTTTTTTGCTTTCTCAGTA+GGG | + | chr2.1:2439017-2439036 | MS.gene060878:intron | 30.0% |
| !!! | TAATTTTGACTTTGGCAATG+AGG | + | chr2.1:2440953-2440972 | MS.gene060878:intron | 30.0% |
| !!! | TTTATTTTGCACTCACATAC+AGG | + | chr2.1:2439185-2439204 | MS.gene060878:intron | 30.0% |
| !!! | TTTTTTTGCTTTCTCAGTAG+GGG | + | chr2.1:2439018-2439037 | MS.gene060878:intron | 30.0% |
| AAATCCTGCTTAAACTCTGA+AGG | - | chr2.1:2441293-2441312 | None:intergenic | 35.0% | |
| ACAGTTATTGGGGTAAGATT+TGG | + | chr2.1:2440523-2440542 | MS.gene060878:intron | 35.0% | |
| ACATCCAGTTAGGTTATATC+AGG | - | chr2.1:2439616-2439635 | None:intergenic | 35.0% | |
| ACCAATCAAATCATCCCATT+TGG | + | chr2.1:2441000-2441019 | MS.gene060878:intron | 35.0% | |
| ACTAGGAGAGTTAGTTACAT+TGG | - | chr2.1:2441840-2441859 | None:intergenic | 35.0% | |
| AGTAGGGGACTTACTTTAAA+TGG | - | chr2.1:2441519-2441538 | None:intergenic | 35.0% | |
| ATTTCCTTCAGAGTTTAAGC+AGG | + | chr2.1:2441286-2441305 | MS.gene060878:CDS | 35.0% | |
| CATGATTGCTAATAGCAATG+TGG | + | chr2.1:2441332-2441351 | MS.gene060878:CDS | 35.0% | |
| CTAGGAGAGTTAGTTACATT+GGG | - | chr2.1:2441839-2441858 | None:intergenic | 35.0% | |
| GAAGAGTAAGGAGACTTAAT+TGG | - | chr2.1:2440229-2440248 | None:intergenic | 35.0% | |
| GATTGGTGAGAAGTTTAAGT+AGG | - | chr2.1:2440987-2441006 | None:intergenic | 35.0% | |
| TAATCTTGCCTTTCATGTCA+TGG | + | chr2.1:2440408-2440427 | MS.gene060878:intron | 35.0% | |
| TCCTAGTAAGCACATTAGTT+GGG | + | chr2.1:2441853-2441872 | MS.gene060878:intron | 35.0% | |
| TGAAGTTATGTACCTTGCTA+TGG | + | chr2.1:2440199-2440218 | MS.gene060878:intron | 35.0% | |
| TGGGTACAAGATTATGACAA+AGG | + | chr2.1:2440711-2440730 | MS.gene060878:intron | 35.0% | |
| TTAGCAATCATGTTTGTCCT+TGG | - | chr2.1:2441324-2441343 | None:intergenic | 35.0% | |
| TTGAATTCACGACAGCATAT+AGG | + | chr2.1:2439138-2439157 | MS.gene060878:intron | 35.0% | |
| TTTCATACACAGAGGAAACA+AGG | - | chr2.1:2440831-2440850 | None:intergenic | 35.0% | |
| ! | ATGATGGAAGGCAGTTTATT+AGG | - | chr2.1:2439098-2439117 | None:intergenic | 35.0% |
| ! | CATATTTCTAATAGGGCATG+TGG | + | chr2.1:2439057-2439076 | MS.gene060878:intron | 35.0% |
| ! | GAAGTTATGTACCTTGCTAT+GGG | + | chr2.1:2440200-2440219 | MS.gene060878:intron | 35.0% |
| ! | GTGAGTTGAAGGATTGTAAA+AGG | + | chr2.1:2438775-2438794 | MS.gene060878:intron | 35.0% |
| ! | TTAATTGGTTTCCCATAGCA+AGG | - | chr2.1:2440214-2440233 | None:intergenic | 35.0% |
| !! | AATGTTTTTGACAGGAGGAT+TGG | + | chr2.1:2441247-2441266 | MS.gene060878:intron | 35.0% |
| !! | ATAATGTCGGAGTTCTGAAT+AGG | + | chr2.1:2440017-2440036 | MS.gene060878:intron | 35.0% |
| !! | ATATAGAGCTCTGAAAGTAG+GGG | - | chr2.1:2441534-2441553 | None:intergenic | 35.0% |
| !! | ATCTGTTAGGTACTGAGTTT+GGG | - | chr2.1:2441885-2441904 | None:intergenic | 35.0% |
| !! | CTAGTAAGAACTTTTGGGAA+AGG | - | chr2.1:2442006-2442025 | None:intergenic | 35.0% |
| !! | GAATACTCTTTTTCGTTCTC+AGG | + | chr2.1:2440289-2440308 | MS.gene060878:intron | 35.0% |
| !! | GATTGCTTTTAGTGCATGTT+TGG | + | chr2.1:2438705-2438724 | MS.gene060878:intron | 35.0% |
| !!! | GCTTTTTTTGCTTTCTCAGT+AGG | + | chr2.1:2439016-2439035 | MS.gene060878:intron | 35.0% |
| AAAGATATGGCACCTTGTTC+AGG | + | chr2.1:2442166-2442185 | MS.gene060878:CDS | 40.0% | |
| AAGCTCAGAAGGATAACCTT+AGG | + | chr2.1:2440345-2440364 | MS.gene060878:CDS | 40.0% | |
| AATACCACGCACATCAACAA+AGG | - | chr2.1:2440121-2440140 | None:intergenic | 40.0% | |
| AATGCTACTGAGCAGTAAGA+AGG | - | chr2.1:2441226-2441245 | None:intergenic | 40.0% | |
| ACAAGCTTAGTTGCTCTTGT+TGG | + | chr2.1:2439669-2439688 | MS.gene060878:intron | 40.0% | |
| ACCAAGTCAAGTGAAGAGTA+AGG | - | chr2.1:2440241-2440260 | None:intergenic | 40.0% | |
| ACCATAGACACAATTTGACC+AGG | - | chr2.1:2441366-2441385 | None:intergenic | 40.0% | |
| AGAGAAATGTCTCTTCTCTG+AGG | - | chr2.1:2441708-2441727 | None:intergenic | 40.0% | |
| AGAGTTAGTTACATTGGGTG+AGG | - | chr2.1:2441834-2441853 | None:intergenic | 40.0% | |
| AGTTAGTTACATTGGGTGAG+GGG | - | chr2.1:2441832-2441851 | None:intergenic | 40.0% | |
| ATGACTTCAGTGATCGTGTT+TGG | + | chr2.1:2441589-2441608 | MS.gene060878:intron | 40.0% | |
| CAACAAGTACAACCTGAACA+AGG | - | chr2.1:2442181-2442200 | None:intergenic | 40.0% | |
| CAAGCTTAGTTGCTCTTGTT+GGG | + | chr2.1:2439670-2439689 | MS.gene060878:intron | 40.0% | |
| CAGCAAAGCAAGAAAAAGAC+AGG | - | chr2.1:2440578-2440597 | None:intergenic | 40.0% | |
| CAGTAACGATGCGAAAGATA+TGG | + | chr2.1:2442153-2442172 | MS.gene060878:CDS | 40.0% | |
| CCATAGACACAATTTGACCA+GGG | - | chr2.1:2441365-2441384 | None:intergenic | 40.0% | |
| CGAACGAAGATTTATCCAGT+TGG | + | chr2.1:2438225-2438244 | MS.gene060878:CDS | 40.0% | |
| CTCCTAGTAAGCACATTAGT+TGG | + | chr2.1:2441852-2441871 | MS.gene060878:intron | 40.0% | |
| GAGTTAGTTACATTGGGTGA+GGG | - | chr2.1:2441833-2441852 | None:intergenic | 40.0% | |
| GCAGGATTTCAACATTACCA+AGG | + | chr2.1:2441304-2441323 | MS.gene060878:CDS | 40.0% | |
| GCCAAATGGGATGATTTGAT+TGG | - | chr2.1:2441004-2441023 | None:intergenic | 40.0% | |
| GGAAACAAGGATTACAGACA+AGG | - | chr2.1:2440818-2440837 | None:intergenic | 40.0% | |
| TAGACCCATCGCAGATAAAA+AGG | + | chr2.1:2441437-2441456 | MS.gene060878:CDS | 40.0% | |
| TCAGGTTCATGAAATGGCAA+TGG | + | chr2.1:2440307-2440326 | MS.gene060878:intron | 40.0% | |
| TCCTTACTCTTCACTTGACT+TGG | + | chr2.1:2440237-2440256 | MS.gene060878:intron | 40.0% | |
| TCGTTCTCAGGTTCATGAAA+TGG | + | chr2.1:2440301-2440320 | MS.gene060878:intron | 40.0% | |
| ! | AAGGGTGCATACGAAAGTTT+GGG | + | chr2.1:2442107-2442126 | MS.gene060878:CDS | 40.0% |
| ! | AGATGCCTTTTTATCTGCGA+TGG | - | chr2.1:2441445-2441464 | None:intergenic | 40.0% |
| ! | CACTGTTGTTTAGAGGAACT+TGG | + | chr2.1:2438515-2438534 | MS.gene060878:intron | 40.0% |
| ! | GATGCCTTTTTATCTGCGAT+GGG | - | chr2.1:2441444-2441463 | None:intergenic | 40.0% |
| ! | TGAGGATGTTTTTCCTGTTG+AGG | + | chr2.1:2439773-2439792 | MS.gene060878:CDS | 40.0% |
| !! | GATCTGTTAGGTACTGAGTT+TGG | - | chr2.1:2441886-2441905 | None:intergenic | 40.0% |
| AAATGCAGAGCAGCTTGCAA+GGG | + | chr2.1:2439228-2439247 | MS.gene060878:CDS | 45.0% | |
| AACAGGCTACACCATCTACT+AGG | - | chr2.1:2441568-2441587 | None:intergenic | 45.0% | |
| AATGATCCCTATACTCCCAG+AGG | + | chr2.1:2441675-2441694 | MS.gene060878:intron | 45.0% | |
| ACAAGTCTCTTCTGGTAGCA+TGG | + | chr2.1:2441395-2441414 | MS.gene060878:CDS | 45.0% | |
| ATGCTACCAGAAGAGACTTG+TGG | - | chr2.1:2441396-2441415 | None:intergenic | 45.0% | |
| ATGGTGTGCCATGACATGAA+AGG | - | chr2.1:2440419-2440438 | None:intergenic | 45.0% | |
| ATTGAGAGAACCTGAAGAGG+AGG | - | chr2.1:2438311-2438330 | None:intergenic | 45.0% | |
| CAGACAAGGTTCACCGAAAA+AGG | - | chr2.1:2440804-2440823 | None:intergenic | 45.0% | |
| CCCTGGTCAAATTGTGTCTA+TGG | + | chr2.1:2441362-2441381 | MS.gene060878:CDS | 45.0% | |
| CGATCACTGAAGTCATGAAC+AGG | - | chr2.1:2441585-2441604 | None:intergenic | 45.0% | |
| GAGATTGAGAGAACCTGAAG+AGG | - | chr2.1:2438314-2438333 | None:intergenic | 45.0% | |
| GCCCAACTAATGTGCTTACT+AGG | - | chr2.1:2441857-2441876 | None:intergenic | 45.0% | |
| GGAGGAAGAGTGAAGTAGAT+CGG | - | chr2.1:2438252-2438271 | None:intergenic | 45.0% | |
| GGATAGGGATAGCAATTGAG+AGG | - | chr2.1:2441776-2441795 | None:intergenic | 45.0% | |
| GTATGCACCCTTGAAAGTTG+CGG | - | chr2.1:2442099-2442118 | None:intergenic | 45.0% | |
| GTTAGTTACATTGGGTGAGG+GGG | - | chr2.1:2441831-2441850 | None:intergenic | 45.0% | |
| TAAATGCAGAGCAGCTTGCA+AGG | + | chr2.1:2439227-2439246 | MS.gene060878:CDS | 45.0% | |
| TAGACACAATTTGACCAGGG+CGG | - | chr2.1:2441362-2441381 | None:intergenic | 45.0% | |
| TCTACTCCACAAGTCTCTTC+TGG | + | chr2.1:2441387-2441406 | MS.gene060878:CDS | 45.0% | |
| TTGAGAGAACCTGAAGAGGA+GGG | - | chr2.1:2438310-2438329 | None:intergenic | 45.0% | |
| ! | AGAGTACCTAGTTGCAGCAA+TGG | - | chr2.1:2438607-2438626 | None:intergenic | 45.0% |
| ! | ATAGCTTGCCGCAACTTTCA+AGG | + | chr2.1:2442088-2442107 | MS.gene060878:intron | 45.0% |
| ! | CAAGGGTGCATACGAAAGTT+TGG | + | chr2.1:2442106-2442125 | MS.gene060878:CDS | 45.0% |
| ! | TAGCTTGCCGCAACTTTCAA+GGG | + | chr2.1:2442089-2442108 | MS.gene060878:intron | 45.0% |
| !! | AGCTTTTCCTCTGGGAGTAT+AGG | - | chr2.1:2441685-2441704 | None:intergenic | 45.0% |
| !! | GCTTTTCCTCTGGGAGTATA+GGG | - | chr2.1:2441684-2441703 | None:intergenic | 45.0% |
| !! | ATAAATAAAGAAAATAAAAT+AGG | - | chr2.1:2440625-2440644 | None:intergenic | 5.0% |
| AGACACAATTTGACCAGGGC+GGG | - | chr2.1:2441361-2441380 | None:intergenic | 50.0% | |
| ATACAGGCTTCTTGCTCGTG+AGG | + | chr2.1:2439201-2439220 | MS.gene060878:intron | 50.0% | |
| ATCCTTCTGAGCTTCCTGGA+CGG | - | chr2.1:2440339-2440358 | None:intergenic | 50.0% | |
| CACAGTCCATTGCTGCAACT+AGG | + | chr2.1:2438598-2438617 | MS.gene060878:CDS | 50.0% | |
| CGCTTCAGCTCTTACAGTCT+TGG | - | chr2.1:2438574-2438593 | None:intergenic | 50.0% | |
| CTGAATAGAGCAAGGCAGTC+TGG | + | chr2.1:2441489-2441508 | MS.gene060878:CDS | 50.0% | |
| CTGTCCTTTGTTGATGTGCG+TGG | + | chr2.1:2440114-2440133 | MS.gene060878:intron | 50.0% | |
| GCGATGGGTCTACTAGTCAT+GGG | - | chr2.1:2441429-2441448 | None:intergenic | 50.0% | |
| GGTTATCCTTCTGAGCTTCC+TGG | - | chr2.1:2440343-2440362 | None:intergenic | 50.0% | |
| GTGAAGTAGATCGGTCCAAC+TGG | - | chr2.1:2438243-2438262 | None:intergenic | 50.0% | |
| TACAGGCTTCTTGCTCGTGA+GGG | + | chr2.1:2439202-2439221 | MS.gene060878:intron | 50.0% | |
| TGCGATGGGTCTACTAGTCA+TGG | - | chr2.1:2441430-2441449 | None:intergenic | 50.0% | |
| !! | AGTTTGGGCGTTGATGCTTG+TGG | + | chr2.1:2442122-2442141 | MS.gene060878:CDS | 50.0% |
| !! | CTCTGAGGAGCTTTTCCTCT+GGG | - | chr2.1:2441693-2441712 | None:intergenic | 50.0% |
| !! | GTTGCAGCAATGGACTGTGA+CGG | - | chr2.1:2438597-2438616 | None:intergenic | 50.0% |
| !! | TCTCTGAGGAGCTTTTCCTC+TGG | - | chr2.1:2441694-2441713 | None:intergenic | 50.0% |
| ATACCCGCACAAGACGCACA+TGG | - | chr2.1:2439343-2439362 | None:intergenic | 55.0% | |
| CGTACCATGTGCGTCTTGTG+CGG | + | chr2.1:2439336-2439355 | MS.gene060878:intron | 55.0% | |
| CTGAAGAGGAGGGAACTGAG+CGG | - | chr2.1:2438300-2438319 | None:intergenic | 55.0% | |
| GTACCATGTGCGTCTTGTGC+GGG | + | chr2.1:2439337-2439356 | MS.gene060878:intron | 55.0% | |
| ! | AGCGGCTTGTTCGAGAAGCT+TGG | - | chr2.1:2438273-2438292 | None:intergenic | 55.0% |
| ! | GGCTTGTTCGAGAAGCTTGG+AGG | - | chr2.1:2438270-2438289 | None:intergenic | 55.0% |
| ! | TCGACGCTTGTTGCCTCAAC+AGG | - | chr2.1:2439789-2439808 | None:intergenic | 55.0% |
| !! | CGTCGAAGAGTATCTGCAGC+AGG | + | chr2.1:2439803-2439822 | MS.gene060878:CDS | 55.0% |
| !! | TTGGGCGTTGATGCTTGTGG+TGG | + | chr2.1:2442125-2442144 | MS.gene060878:CDS | 55.0% |
| AGAGGAGGGAACTGAGCGGA+AGG | - | chr2.1:2438296-2438315 | None:intergenic | 60.0% | |
| AGGGAACTGAGCGGAAGGAG+CGG | - | chr2.1:2438291-2438310 | None:intergenic | 60.0% | |
| CGCTCAGTTCCCTCCTCTTC+AGG | + | chr2.1:2438298-2438317 | MS.gene060878:CDS | 60.0% | |
| TGCCGTCCAGGAAGCTCAGA+AGG | + | chr2.1:2440334-2440353 | MS.gene060878:CDS | 60.0% | |
| GGCAATGGTCTCTGCCGTCC+AGG | + | chr2.1:2440322-2440341 | MS.gene060878:CDS | 65.0% | |
| AGCAATGTGGGTGCCCGCCC+TGG | + | chr2.1:2441345-2441364 | MS.gene060878:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 2438221 | 2442214 | 2438221 | ID=MS.gene060878 |
| chr2.1 | mRNA | 2438221 | 2442214 | 2438221 | ID=MS.gene060878.t1;Parent=MS.gene060878 |
| chr2.1 | exon | 2438221 | 2438319 | 2438221 | ID=MS.gene060878.t1.exon1;Parent=MS.gene060878.t1 |
| chr2.1 | CDS | 2438221 | 2438319 | 2438221 | ID=cds.MS.gene060878.t1;Parent=MS.gene060878.t1 |
| chr2.1 | exon | 2438528 | 2438619 | 2438528 | ID=MS.gene060878.t1.exon2;Parent=MS.gene060878.t1 |
| chr2.1 | CDS | 2438528 | 2438619 | 2438528 | ID=cds.MS.gene060878.t1;Parent=MS.gene060878.t1 |
| chr2.1 | exon | 2439207 | 2439273 | 2439207 | ID=MS.gene060878.t1.exon3;Parent=MS.gene060878.t1 |
| chr2.1 | CDS | 2439207 | 2439273 | 2439207 | ID=cds.MS.gene060878.t1;Parent=MS.gene060878.t1 |
| chr2.1 | exon | 2439765 | 2439824 | 2439765 | ID=MS.gene060878.t1.exon4;Parent=MS.gene060878.t1 |
| chr2.1 | CDS | 2439765 | 2439824 | 2439765 | ID=cds.MS.gene060878.t1;Parent=MS.gene060878.t1 |
| chr2.1 | exon | 2440311 | 2440400 | 2440311 | ID=MS.gene060878.t1.exon5;Parent=MS.gene060878.t1 |
| chr2.1 | CDS | 2440311 | 2440400 | 2440311 | ID=cds.MS.gene060878.t1;Parent=MS.gene060878.t1 |
| chr2.1 | exon | 2441261 | 2441524 | 2441261 | ID=MS.gene060878.t1.exon6;Parent=MS.gene060878.t1 |
| chr2.1 | CDS | 2441261 | 2441524 | 2441261 | ID=cds.MS.gene060878.t1;Parent=MS.gene060878.t1 |
| chr2.1 | exon | 2442092 | 2442214 | 2442092 | ID=MS.gene060878.t1.exon7;Parent=MS.gene060878.t1 |
| chr2.1 | CDS | 2442092 | 2442214 | 2442092 | ID=cds.MS.gene060878.t1;Parent=MS.gene060878.t1 |
| Gene Sequence |
| Protein sequence |
