Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052663.t1 | XP_003630944.1 | 97.9 | 1132 | 18 | 1 | 1 | 1126 | 1 | 1132 | 0.00E+00 | 2169.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052663.t1 | F4HXV6 | 74.5 | 1135 | 256 | 7 | 1 | 1125 | 1 | 1112 | 0.0e+00 | 1651.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052663.t1 | G7LAL2 | 97.9 | 1132 | 18 | 1 | 1 | 1126 | 1 | 1132 | 0.0e+00 | 2169.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052661 | MS.gene052663 | 0.972719 | 3.16E-135 | -1.69E-46 |
| MS.gene052662 | MS.gene052663 | 0.972229 | 2.00E-134 | -1.69E-46 |
| MS.gene052663 | MS.gene060878 | 0.832806 | 7.66E-56 | -1.69E-46 |
| MS.gene052663 | MS.gene36230 | 0.83258 | 8.71E-56 | -1.69E-46 |
| MS.gene052663 | MS.gene40337 | 0.807791 | 4.25E-50 | -1.69E-46 |
| MS.gene052663 | MS.gene60878 | 0.805193 | 1.50E-49 | -1.69E-46 |
| MS.gene052663 | MS.gene72200 | 0.813996 | 1.93E-51 | -1.69E-46 |
| MS.gene052663 | MS.gene82544 | 0.823281 | 1.51E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052663.t1 | MTR_8g105290 | 97.880 | 1132 | 18 | 1 | 1 | 1126 | 1 | 1132 | 0.0 | 2269 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052663.t1 | AT1G14850 | 75.066 | 1135 | 250 | 7 | 1 | 1125 | 1 | 1112 | 0.0 | 1663 |
Find 297 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACCAAATGTATTCAATTT+TGG | 0.147828 | 4.1:+1616198 | MS.gene052663:CDS |
| TCACAAGCCTAGCTGTTTAA+AGG | 0.209434 | 4.1:+1616578 | MS.gene052663:CDS |
| CAAGATTACTCTTTCCTCTA+TGG | 0.211410 | 4.1:+1617453 | MS.gene052663:CDS |
| AAGCTTCAGGTTTATGTTCT+TGG | 0.213755 | 4.1:+1616294 | MS.gene052663:CDS |
| TCAGGCACTTCATTTGAAAA+TGG | 0.218295 | 4.1:+1617515 | MS.gene052663:CDS |
| AGTCAAGTACTTTGAACTTT+TGG | 0.263166 | 4.1:+1619478 | MS.gene052663:CDS |
| GGACACCCAGCTGAACAATT+TGG | 0.272008 | 4.1:-1619050 | None:intergenic |
| GCCCATGCCCTACGTATTTC+AGG | 0.275775 | 4.1:-1612758 | None:intergenic |
| TTTCCATGAGTATCTTTATC+AGG | 0.289269 | 4.1:+1619089 | MS.gene052663:CDS |
| GAAGATTTCTACAATCGTTT+TGG | 0.289778 | 4.1:+1617173 | MS.gene052663:CDS |
| GACCCCTCACGGAAGGAATT+TGG | 0.296507 | 4.1:+1618964 | MS.gene052663:CDS |
| TGCTGGAACTCTTATCCTTT+CGG | 0.301665 | 4.1:+1616725 | MS.gene052663:CDS |
| AGTGCTTTGCGGTCTCTTAA+AGG | 0.313525 | 4.1:+1618940 | MS.gene052663:CDS |
| AACACGGCCTTCTCCTCCTT+GGG | 0.325527 | 4.1:+1616608 | MS.gene052663:CDS |
| TAGCATGGGCCAGGTTGTTC+AGG | 0.325776 | 4.1:+1617379 | MS.gene052663:CDS |
| AAAGGAAGTTTAAGTGCTTC+AGG | 0.340254 | 4.1:+1617497 | MS.gene052663:CDS |
| TATGAGCTTATTTATTCAAC+TGG | 0.342352 | 4.1:+1615901 | MS.gene052663:CDS |
| GAGAATGAATTGTTGGAGTA+TGG | 0.343375 | 4.1:+1619132 | MS.gene052663:CDS |
| GAGGAGTTCCCGGGCATTAC+GGG | 0.344091 | 4.1:+1616839 | MS.gene052663:CDS |
| CTACCTGTAATGGTTATAAA+AGG | 0.344326 | 4.1:+1617479 | MS.gene052663:CDS |
| AAGAGTTCCAGCAGAATAAT+AGG | 0.349609 | 4.1:-1616715 | None:intergenic |
| GGAAAATTCTGTCGGGTGAT+TGG | 0.350381 | 4.1:-1619071 | None:intergenic |
| TTTGGAACCATGGCTCTTGC+TGG | 0.350797 | 4.1:+1616651 | MS.gene052663:CDS |
| TAGATGGCCAATACCTCAAC+AGG | 0.354221 | 4.1:-1613573 | None:intergenic |
| GCTCCAAAATTGAATACATT+TGG | 0.357663 | 4.1:-1616201 | None:intergenic |
| CGAGGAGTTCCCGGGCATTA+CGG | 0.358254 | 4.1:+1616838 | MS.gene052663:CDS |
| TTCAAAGTACTTGACTTGAT+TGG | 0.358695 | 4.1:-1619471 | None:intergenic |
| TAAAACTGATCTCGGAGAAT+TGG | 0.359130 | 4.1:-1617150 | None:intergenic |
| TTGACAATTCTTTGTTCCTC+TGG | 0.359523 | 4.1:+1612786 | MS.gene052663:CDS |
| TCTCTAGGGTGAGTAGAATA+AGG | 0.360839 | 4.1:-1612081 | None:intergenic |
| AAGATCGAAGTTTGTGTTCA+AGG | 0.362765 | 4.1:-1617577 | None:intergenic |
| AGAGAGCTTCACCAGATCTA+AGG | 0.363992 | 4.1:-1617959 | None:intergenic |
| TTTAAGAAGGGCAATAGGTC+AGG | 0.365266 | 4.1:-1619159 | None:intergenic |
| CAGGCACTTCATTTGAAAAT+GGG | 0.366839 | 4.1:+1617516 | MS.gene052663:CDS |
| TATGGTTGTGTAGCAGGATT+AGG | 0.367725 | 4.1:+1617644 | MS.gene052663:CDS |
| TGTTCCTCGCCACTATATTC+AGG | 0.369116 | 4.1:-1613468 | None:intergenic |
| GGCTGGTGTTGAATCCATTC+AGG | 0.373807 | 4.1:-1616554 | None:intergenic |
| AAGGAAAATGCGGCCCTTAT+CGG | 0.376997 | 4.1:-1615857 | None:intergenic |
| TTAGTTGGAGTGTGCTGCTC+TGG | 0.379312 | 4.1:+1615733 | MS.gene052663:CDS |
| GTTTATGTTCTTGGACCAAT+TGG | 0.382747 | 4.1:+1616303 | MS.gene052663:CDS |
| CTATACTCAGAAATTGAGTT+TGG | 0.384122 | 4.1:+1616951 | MS.gene052663:CDS |
| GGTGGTTCTGCATTGGGTGC+TGG | 0.384567 | 4.1:+1617695 | MS.gene052663:CDS |
| TTGCTAAGATTAAAAGATAC+TGG | 0.386459 | 4.1:-1613548 | None:intergenic |
| GTTAGTGGCGGTCTCACCTT+TGG | 0.394157 | 4.1:+1616633 | MS.gene052663:CDS |
| AAGGCTTATATCTGCTCTAA+TGG | 0.395958 | 4.1:+1618115 | MS.gene052663:CDS |
| TCTCCTCCTTGGGGTGTTAG+TGG | 0.397551 | 4.1:+1616618 | MS.gene052663:CDS |
| GCGGTGGAGCCGCAAATAAA+AGG | 0.397846 | 4.1:+1617777 | MS.gene052663:CDS |
| TCCTCCTTGGCAGTATATGT+TGG | 0.401657 | 4.1:-1617046 | None:intergenic |
| GTATCTTCTTTACCAGTTGA+AGG | 0.401716 | 4.1:+1616867 | MS.gene052663:CDS |
| CAACACGGCCTTCTCCTCCT+TGG | 0.402833 | 4.1:+1616607 | MS.gene052663:CDS |
| AGCCGCCTTAAAATGTCTAA+TGG | 0.405006 | 4.1:-1617119 | None:intergenic |
| GACTGAAGAGATGAAGCTTC+AGG | 0.405306 | 4.1:+1616281 | MS.gene052663:CDS |
| CCTCCTTGGCAGTATATGTT+GGG | 0.406408 | 4.1:-1617045 | None:intergenic |
| CTTATTTATTCAACTGGCTC+AGG | 0.407126 | 4.1:+1615907 | MS.gene052663:CDS |
| GAACAGGTACGAGGAGTTCC+CGG | 0.409786 | 4.1:+1616829 | MS.gene052663:CDS |
| GTAAGTGGTTCCATTCTATA+TGG | 0.410972 | 4.1:+1617671 | MS.gene052663:CDS |
| CATGTCACTCGTCTGATTCA+AGG | 0.417185 | 4.1:+1618008 | MS.gene052663:CDS |
| TTTGAGGATCCAAGACTTGT+TGG | 0.417277 | 4.1:+1617296 | MS.gene052663:CDS |
| AACTTCTCCAATGGCCAATC+GGG | 0.418252 | 4.1:+1619434 | MS.gene052663:CDS |
| TGAACAGTAGCTGAAGTATC+TGG | 0.419603 | 4.1:-1616924 | None:intergenic |
| GGACTCTATGGTTGTGTAGC+AGG | 0.419623 | 4.1:+1617638 | MS.gene052663:CDS |
| TGTTGACCCTGTTGTTGAAA+TGG | 0.420741 | 4.1:+1616224 | MS.gene052663:CDS |
| TGAGGGCAATGGAGTGCATT+AGG | 0.421519 | 4.1:+1617928 | MS.gene052663:CDS |
| TCGGATGGTATTGTATAATC+TGG | 0.425433 | 4.1:-1615805 | None:intergenic |
| TATGGTGGTGGTTCTGCATT+GGG | 0.426235 | 4.1:+1617689 | MS.gene052663:CDS |
| GGGTTGCCCGAGCTACTATA+AGG | 0.427377 | 4.1:+1618334 | MS.gene052663:CDS |
| TCCTCACCATCAGGTAATCT+AGG | 0.432690 | 4.1:+1616807 | MS.gene052663:CDS |
| GGTGAGATGCAAACAATAGA+TGG | 0.434239 | 4.1:-1616438 | None:intergenic |
| TATAAGCCAAATTGTTCAGC+TGG | 0.434986 | 4.1:+1619044 | MS.gene052663:CDS |
| CCTTCTAGCGGAAGCCTGAA+TGG | 0.436243 | 4.1:+1616540 | MS.gene052663:CDS |
| CAACTTCTCCAATGGCCAAT+CGG | 0.437104 | 4.1:+1619433 | MS.gene052663:CDS |
| AACCAGAGGAGAGGACTCTA+TGG | 0.437359 | 4.1:+1617626 | MS.gene052663:CDS |
| ATATGGTGGTGGTTCTGCAT+TGG | 0.439770 | 4.1:+1617688 | MS.gene052663:CDS |
| CCATTCAGGCTTCCGCTAGA+AGG | 0.441659 | 4.1:-1616540 | None:intergenic |
| TAGTCACAGCAGCTCTCTCC+AGG | 0.443276 | 4.1:-1618391 | None:intergenic |
| TTGTATCTTTCAATAAGAAC+AGG | 0.454146 | 4.1:-1612695 | None:intergenic |
| GGGTGCTGGTGACCGAAGTA+TGG | 0.455558 | 4.1:+1617709 | MS.gene052663:CDS |
| GACTATAGATGATGAGGAAA+AGG | 0.457447 | 4.1:+1618409 | MS.gene052663:CDS |
| TTTAATGGCCCATCACCAAT+TGG | 0.457665 | 4.1:-1616318 | None:intergenic |
| AGAATGAAAGGTACCTCTCT+AGG | 0.458345 | 4.1:-1612096 | None:intergenic |
| TGCTGCTCTGGAGGAGCAGA+TGG | 0.459140 | 4.1:+1615745 | MS.gene052663:CDS |
| TGGTTGAGGTAGCGAATACA+TGG | 0.459389 | 4.1:+1612663 | MS.gene052663:CDS |
| AGGCAGTTGCTCCTTAGATC+TGG | 0.460170 | 4.1:+1617948 | MS.gene052663:CDS |
| CTCGTTGTCAGTGATCGAAT+TGG | 0.461037 | 4.1:+1611994 | MS.gene052663:CDS |
| TCATTATAAGCATCACCTGC+AGG | 0.463829 | 4.1:-1618850 | None:intergenic |
| TTTCGATTCAAGGGTAGATA+AGG | 0.464480 | 4.1:-1616460 | None:intergenic |
| TACTCAGAAATTGAGTTTGG+TGG | 0.465253 | 4.1:+1616954 | MS.gene052663:CDS |
| GAAAGCATTCGTCCTTCAAC+TGG | 0.465686 | 4.1:-1616879 | None:intergenic |
| TTCGATTCAAGGGTAGATAA+GGG | 0.467152 | 4.1:-1616459 | None:intergenic |
| CCATCAGGTAATCTAGGAAC+AGG | 0.468552 | 4.1:+1616813 | MS.gene052663:CDS |
| ACAAGGAGTGAAGGCATAGT+TGG | 0.470366 | 4.1:-1616759 | None:intergenic |
| GTATGCGTCACTGCTGGTCT+AGG | 0.472775 | 4.1:+1615952 | MS.gene052663:CDS |
| CTTCAGCACCATGGGCATGA+TGG | 0.474911 | 4.1:+1617079 | MS.gene052663:CDS |
| AAGATTACTCTTTCCTCTAT+GGG | 0.474913 | 4.1:+1617454 | MS.gene052663:CDS |
| CTTCTTAGCCGTGGAAGCCC+TGG | 0.475577 | 4.1:+1618373 | MS.gene052663:CDS |
| TGTGTTTAATGCTAGCTTCG+AGG | 0.475776 | 4.1:+1617216 | MS.gene052663:CDS |
| AGCACTCAGTCCTCACCATC+AGG | 0.477707 | 4.1:+1616798 | MS.gene052663:CDS |
| AGACTCTGGAACTTTGCTTA+AGG | 0.478360 | 4.1:-1618459 | None:intergenic |
| TGCTGCTGGTGGATTTAGCA+TGG | 0.478956 | 4.1:+1617364 | MS.gene052663:CDS |
| AAGGAATTTGGCTCTCCCAT+TGG | 0.479497 | 4.1:+1618976 | MS.gene052663:CDS |
| AAGTGTGGCATGTACCGATA+AGG | 0.481528 | 4.1:+1615843 | MS.gene052663:CDS |
| GTCTAGGAAGTGTAATTTCA+AGG | 0.481768 | 4.1:+1615968 | MS.gene052663:CDS |
| TGTGGCATGCCAACAAGTCT+TGG | 0.482330 | 4.1:-1617305 | None:intergenic |
| ACACATCGCAGCCGCCTCGC+CGG | 0.482650 | 4.1:-1617198 | None:intergenic |
| GTTGGCATGCCACAACTTGA+AGG | 0.483372 | 4.1:+1617314 | MS.gene052663:CDS |
| TAAAGAAAATTGCTGAAGAA+AGG | 0.483809 | 4.1:+1616337 | MS.gene052663:CDS |
| AGGTCTTGAGAATGAATTGT+TGG | 0.485566 | 4.1:+1619125 | MS.gene052663:CDS |
| GCAGTATATGTTGGGTTGAG+AGG | 0.486330 | 4.1:-1617037 | None:intergenic |
| AAATAATCATCAGTGCTTTG+CGG | 0.486588 | 4.1:+1618929 | MS.gene052663:CDS |
| GAATCATGTGAAAGGGCGTC+TGG | 0.489834 | 4.1:+1616993 | MS.gene052663:CDS |
| TGCTCATGCATTGCTAAGAC+TGG | 0.492006 | 4.1:+1619538 | MS.gene052663:CDS |
| CTCTTAAAGGTGACCCCTCA+CGG | 0.493295 | 4.1:+1618953 | MS.gene052663:CDS |
| TATCAGGCTATGATAGACTT+AGG | 0.493691 | 4.1:+1619105 | MS.gene052663:CDS |
| CAGCAATGTTATTGCAGAGA+AGG | 0.495495 | 4.1:+1617262 | MS.gene052663:CDS |
| GAGGCAGCCTATTATTCTGC+TGG | 0.495786 | 4.1:+1616708 | MS.gene052663:CDS |
| ATACAGTTTCCCGTAATGCC+CGG | 0.497593 | 4.1:-1616848 | None:intergenic |
| GTTCTTGGACCAATTGGTGA+TGG | 0.498305 | 4.1:+1616309 | MS.gene052663:CDS |
| TTGTATGCAGACTATCCATC+GGG | 0.499733 | 4.1:+1617543 | MS.gene052663:CDS |
| TACAATGCGGCTGGTGGGGA+AGG | 0.500968 | 4.1:+1612713 | MS.gene052663:CDS |
| TCCTGCAGAATTAGCTGCCA+TGG | 0.502902 | 4.1:+1617817 | MS.gene052663:CDS |
| ACTGAACTAGGGCTTGTTGA+AGG | 0.503774 | 4.1:-1618043 | None:intergenic |
| CAGACTCCTTATAGTAGCTC+GGG | 0.504829 | 4.1:-1618340 | None:intergenic |
| TCTATGGGAACTACCTGTAA+TGG | 0.507594 | 4.1:+1617469 | MS.gene052663:CDS |
| CTCAATGGAATCATGTGAAA+GGG | 0.510286 | 4.1:+1616986 | MS.gene052663:CDS |
| TATTCGCTACCTCAACCAAA+GGG | 0.512128 | 4.1:-1612658 | None:intergenic |
| GATGTAGCGATTTCGATTCA+AGG | 0.512965 | 4.1:-1616470 | None:intergenic |
| TGGTGGATTTAGCATGGGCC+AGG | 0.513192 | 4.1:+1617370 | MS.gene052663:CDS |
| AGTGTGGCATGTACCGATAA+GGG | 0.514553 | 4.1:+1615844 | MS.gene052663:CDS |
| GCATTACTGCCTTCAAGTTG+TGG | 0.514636 | 4.1:-1617323 | None:intergenic |
| AATAAATAAGCTCATATATG+TGG | 0.515246 | 4.1:-1615894 | None:intergenic |
| GGTTCCATTCTATATGGTGG+TGG | 0.515640 | 4.1:+1617677 | MS.gene052663:CDS |
| AGCTCTCTCCAGGGCTTCCA+CGG | 0.518172 | 4.1:-1618381 | None:intergenic |
| GTACGTAAGTCTGCAGACTC+TGG | 0.518327 | 4.1:-1618473 | None:intergenic |
| TCAGACTCCTTATAGTAGCT+CGG | 0.518482 | 4.1:-1618341 | None:intergenic |
| CATTAGTAAGAGATTAAGAG+AGG | 0.520434 | 4.1:+1618313 | MS.gene052663:CDS |
| ATGCAAACAATAGATGGCTT+TGG | 0.521780 | 4.1:-1616432 | None:intergenic |
| TACTCATGGAAAATTCTGTC+GGG | 0.525023 | 4.1:-1619078 | None:intergenic |
| AACCATAGAGTCCTCTCCTC+TGG | 0.527672 | 4.1:-1617628 | None:intergenic |
| ATTGTCATCTTCAGCACCAT+GGG | 0.527861 | 4.1:+1617071 | MS.gene052663:CDS |
| ACAGCTAGGCTTGTGATGGC+TGG | 0.528884 | 4.1:-1616571 | None:intergenic |
| CGGTCTCACCTTTGGAACCA+TGG | 0.530959 | 4.1:+1616641 | MS.gene052663:CDS |
| TGTAACGAAACTTCTGCAAA+TGG | 0.532012 | 4.1:-1615775 | None:intergenic |
| GCTAATTCTGCAGGACTGTA+CGG | 0.532984 | 4.1:-1617809 | None:intergenic |
| CTTACCTCTTCAGAAGGCAC+AGG | 0.534688 | 4.1:+1618819 | MS.gene052663:CDS |
| AAAGATACAATGCGGCTGGT+GGG | 0.534865 | 4.1:+1612708 | MS.gene052663:CDS |
| TACAGTTTCCCGTAATGCCC+GGG | 0.534887 | 4.1:-1616847 | None:intergenic |
| AAATCTTCTAAAACTGATCT+CGG | 0.535522 | 4.1:-1617158 | None:intergenic |
| AACAGGTACGAGGAGTTCCC+GGG | 0.536433 | 4.1:+1616830 | MS.gene052663:CDS |
| TCAACTAGTTTGTTCTGAAG+AGG | 0.536462 | 4.1:+1618076 | MS.gene052663:CDS |
| TTCCTGAAATACGTAGGGCA+TGG | 0.536753 | 4.1:+1612756 | MS.gene052663:CDS |
| TCATCGGTGGTGGAATGTCG+TGG | 0.537196 | 4.1:+1611932 | None:intergenic |
| TCCATGGCAGCTAATTCTGC+AGG | 0.537400 | 4.1:-1617818 | None:intergenic |
| GATTGTGAAGCAGATCCAAT+GGG | 0.538651 | 4.1:-1618991 | None:intergenic |
| GAAAGATACAATGCGGCTGG+TGG | 0.543305 | 4.1:+1612707 | MS.gene052663:CDS |
| ATGAAATGTTAACTGAACTA+GGG | 0.544395 | 4.1:-1618054 | None:intergenic |
| GATGAAATGTTAACTGAACT+AGG | 0.545744 | 4.1:-1618055 | None:intergenic |
| GAATGAAAGGTACCTCTCTA+GGG | 0.546021 | 4.1:-1612095 | None:intergenic |
| CAACTAGTTTGTTCTGAAGA+GGG | 0.546779 | 4.1:+1618077 | MS.gene052663:CDS |
| TTACACTGGTACAGATGGTA+GGG | 0.547983 | 4.1:+1618277 | MS.gene052663:CDS |
| ATACTCATGGAAAATTCTGT+CGG | 0.548225 | 4.1:-1619079 | None:intergenic |
| AAGATGACAATCCTCCTCCT+TGG | 0.550107 | 4.1:-1617059 | None:intergenic |
| AAGTGCTTGTTCTCTGACTG+TGG | 0.550328 | 4.1:-1618884 | None:intergenic |
| TCCTGAAATACGTAGGGCAT+GGG | 0.550636 | 4.1:+1612757 | MS.gene052663:CDS |
| CATGCATTGCTAAGACTGGC+CGG | 0.551545 | 4.1:+1619542 | MS.gene052663:CDS |
| ACGACATAGGTGCTCCCGAT+TGG | 0.552071 | 4.1:-1619448 | None:intergenic |
| TAGCCTGATAAAGATACTCA+TGG | 0.553452 | 4.1:-1619092 | None:intergenic |
| TTCTTGGACCAATTGGTGAT+GGG | 0.554076 | 4.1:+1616310 | MS.gene052663:CDS |
| GCAATATAGGCCCACCTCCA+TGG | 0.555455 | 4.1:-1617834 | None:intergenic |
| ATTGAAAGATACAATGCGGC+TGG | 0.555495 | 4.1:+1612704 | MS.gene052663:CDS |
| CATGGGCCAGGTTGTTCAGG+AGG | 0.555690 | 4.1:+1617382 | MS.gene052663:CDS |
| GAACAAGCTATTTGTGCTGT+TGG | 0.556209 | 4.1:+1613486 | MS.gene052663:CDS |
| GTTGGAGTGTGCTGCTCTGG+AGG | 0.556678 | 4.1:+1615736 | MS.gene052663:CDS |
| AACATATACTGCCAAGGAGG+AGG | 0.556709 | 4.1:+1617048 | MS.gene052663:CDS |
| TTAAGAAGGGCAATAGGTCA+GGG | 0.557890 | 4.1:-1619158 | None:intergenic |
| TGGTGGTTATGAGAGCTCAA+TGG | 0.557994 | 4.1:+1616971 | MS.gene052663:CDS |
| CGCTAGAAGGAGAGGTGGAT+AGG | 0.560743 | 4.1:-1616527 | None:intergenic |
| CGAGCTGAGAAGAAACTTCA+CGG | 0.561694 | 4.1:-1612017 | None:intergenic |
| AAGCTTCTAGAGATTCTTCG+AGG | 0.561996 | 4.1:-1612041 | None:intergenic |
| ATTACACTGGTACAGATGGT+AGG | 0.562022 | 4.1:+1618276 | MS.gene052663:CDS |
| AACAATTTCCATCATGCCCA+TGG | 0.563013 | 4.1:-1617087 | None:intergenic |
| GCTCAATGGAATCATGTGAA+AGG | 0.563015 | 4.1:+1616985 | MS.gene052663:CDS |
| GTAGCTGAAGTATCTGGTAG+AGG | 0.563574 | 4.1:-1616918 | None:intergenic |
| ATAGCCTGTGCCTTCTGAAG+AGG | 0.563702 | 4.1:-1618823 | None:intergenic |
| CTAACACCCCAAGGAGGAGA+AGG | 0.564873 | 4.1:-1616615 | None:intergenic |
| AGAAAAGTATGCGTCACTGC+TGG | 0.568708 | 4.1:+1615946 | MS.gene052663:CDS |
| AGTATGGTAAGAACCTTGTT+CGG | 0.568865 | 4.1:+1617725 | MS.gene052663:CDS |
| AATCACAAAGATGCACATCA+TGG | 0.569157 | 4.1:+1616369 | MS.gene052663:CDS |
| AGGGTGACCGTCTTGCTACA+AGG | 0.569436 | 4.1:+1618096 | MS.gene052663:CDS |
| TCAAGCACGAGAACTGCTGC+TGG | 0.570103 | 4.1:+1617350 | MS.gene052663:CDS |
| CACGGTATTACGTGTTGAAG+CGG | 0.570239 | 4.1:+1619501 | MS.gene052663:CDS |
| GGTCAGTGTCCTGAATATAG+TGG | 0.570424 | 4.1:+1613459 | MS.gene052663:CDS |
| TTTGGAATATGCACCGAACA+AGG | 0.571990 | 4.1:-1617738 | None:intergenic |
| AATCTTAGCAACCCCTGTTG+AGG | 0.572946 | 4.1:+1613560 | MS.gene052663:CDS |
| AGCACGAGAACTGCTGCTGG+TGG | 0.573089 | 4.1:+1617353 | MS.gene052663:CDS |
| TTGACTTGATTGGACGACAT+AGG | 0.573427 | 4.1:-1619461 | None:intergenic |
| CTGCACTTGATCCAGCCTCT+CGG | 0.573634 | 4.1:+1619013 | MS.gene052663:CDS |
| AGCAAGAGCCATGGTTCCAA+AGG | 0.575322 | 4.1:-1616649 | None:intergenic |
| GACTGCAACAACTTCTCCAA+TGG | 0.575368 | 4.1:+1619425 | MS.gene052663:CDS |
| ATTATACAATACCATCCGAT+GGG | 0.575885 | 4.1:+1615809 | MS.gene052663:CDS |
| GTGACAACCTTTAAACAGCT+AGG | 0.576071 | 4.1:-1616585 | None:intergenic |
| CATCGGTGGTGGAATGTCGT+GGG | 0.576519 | 4.1:+1611933 | None:intergenic |
| ATGTAGCGATTTCGATTCAA+GGG | 0.576698 | 4.1:-1616469 | None:intergenic |
| CAGTATTACACTGGTACAGA+TGG | 0.577792 | 4.1:+1618272 | MS.gene052663:intron |
| AGGAGTGAAGGCATAGTTGG+AGG | 0.578653 | 4.1:-1616756 | None:intergenic |
| GCACAGGCTATCGACCCTGC+AGG | 0.579756 | 4.1:+1618835 | MS.gene052663:CDS |
| AGGTGCTCCCGATTGGCCAT+TGG | 0.579817 | 4.1:-1619441 | None:intergenic |
| AAAGGAGACTCTCGCGCTGG+AGG | 0.580185 | 4.1:+1618427 | MS.gene052663:CDS |
| TCTGGCAAACTGTGGGCAAG+AGG | 0.580519 | 4.1:+1617011 | MS.gene052663:CDS |
| TTAAACAGCTAGGCTTGTGA+TGG | 0.581424 | 4.1:-1616575 | None:intergenic |
| AAGGACTTGCATAGCCCCGA+TGG | 0.584420 | 4.1:-1617558 | None:intergenic |
| GATTATACAATACCATCCGA+TGG | 0.585823 | 4.1:+1615808 | MS.gene052663:CDS |
| ACAAGGTTCTTACCATACTT+CGG | 0.586235 | 4.1:-1617721 | None:intergenic |
| ATTAGTAAGAGATTAAGAGA+GGG | 0.587750 | 4.1:+1618314 | MS.gene052663:CDS |
| GTTGTATGCAGACTATCCAT+CGG | 0.588221 | 4.1:+1617542 | MS.gene052663:CDS |
| TGCTGGTAGACCTCAAAATG+AGG | 0.588234 | 4.1:+1616668 | MS.gene052663:CDS |
| GTATTCGCTACCTCAACCAA+AGG | 0.588301 | 4.1:-1612659 | None:intergenic |
| TGCTGTGACTATAGATGATG+AGG | 0.588314 | 4.1:+1618403 | MS.gene052663:CDS |
| CACGACCAGCAAGGAAAATG+CGG | 0.589351 | 4.1:-1615867 | None:intergenic |
| AGAACCACCACCATATAGAA+TGG | 0.589649 | 4.1:-1617681 | None:intergenic |
| AGGCACTTCATTTGAAAATG+GGG | 0.592406 | 4.1:+1617517 | MS.gene052663:CDS |
| GCTCAGCCTCCTGAACAACC+TGG | 0.595457 | 4.1:-1617388 | None:intergenic |
| TTTATTCAACTGGCTCAGGA+TGG | 0.595573 | 4.1:+1615911 | MS.gene052663:CDS |
| TTACAAATTCTTCTTAGCCG+TGG | 0.596969 | 4.1:+1618364 | MS.gene052663:CDS |
| CTGTTTAAAACAAGGAGTGA+AGG | 0.598709 | 4.1:-1616768 | None:intergenic |
| AATATGGAGTCTAATGGCGG+TGG | 0.599519 | 4.1:+1617761 | MS.gene052663:CDS |
| CCTCCTTGGGGTGTTAGTGG+CGG | 0.600152 | 4.1:+1616621 | MS.gene052663:CDS |
| TGTGTCACAGGTGAGGGCAA+TGG | 0.601138 | 4.1:+1617917 | MS.gene052663:intron |
| GCTGCTGGTGGATTTAGCAT+GGG | 0.601558 | 4.1:+1617365 | MS.gene052663:CDS |
| AAGATACAATGCGGCTGGTG+GGG | 0.602762 | 4.1:+1612709 | MS.gene052663:CDS |
| TATCTTTCAATAAGAACAGG+AGG | 0.602805 | 4.1:-1612692 | None:intergenic |
| GGAAAAGGAGACTCTCGCGC+TGG | 0.604531 | 4.1:+1618424 | MS.gene052663:CDS |
| AGATTGTGAAGCAGATCCAA+TGG | 0.606543 | 4.1:-1618992 | None:intergenic |
| GAATATTTCCTGAAATACGT+AGG | 0.606570 | 4.1:+1612750 | MS.gene052663:CDS |
| CATTATAAGCATCACCTGCA+GGG | 0.606825 | 4.1:-1618849 | None:intergenic |
| AGAGACAGATATTGTATGCA+CGG | 0.606879 | 4.1:+1616259 | MS.gene052663:CDS |
| GAGCCAAATTCCTTCCGTGA+GGG | 0.608008 | 4.1:-1618967 | None:intergenic |
| AATATTTCCTGAAATACGTA+GGG | 0.609500 | 4.1:+1612751 | MS.gene052663:CDS |
| AGCCAAATTCCTTCCGTGAG+GGG | 0.610828 | 4.1:-1618966 | None:intergenic |
| TAAAGGTGACCCCTCACGGA+AGG | 0.611952 | 4.1:+1618957 | MS.gene052663:CDS |
| AGGTCTACCAGCAAGAGCCA+TGG | 0.612188 | 4.1:-1616658 | None:intergenic |
| AGTTTGCTTACCTCTTCAGA+AGG | 0.615018 | 4.1:+1618813 | MS.gene052663:CDS |
| CATTGCTAAGACTGGCCGGA+AGG | 0.617769 | 4.1:+1619546 | MS.gene052663:CDS |
| TCCTAGATTACCTGATGGTG+AGG | 0.620705 | 4.1:-1616808 | None:intergenic |
| CAGGCTTCCGCTAGAAGGAG+AGG | 0.622102 | 4.1:-1616535 | None:intergenic |
| ATTCGTGACGTCACCAACGC+TGG | 0.622785 | 4.1:+1611970 | MS.gene052663:CDS |
| ACTTGTCATCGTAACCCCAT+CGG | 0.622842 | 4.1:-1615824 | None:intergenic |
| CAACCCAACATATACTGCCA+AGG | 0.623440 | 4.1:+1617042 | MS.gene052663:CDS |
| ATTACAGGTAGTTCCCATAG+AGG | 0.624222 | 4.1:-1617467 | None:intergenic |
| TCGAATCCCTGTTTAAAACA+AGG | 0.626469 | 4.1:-1616776 | None:intergenic |
| ACATTGCTCCAGTATTACAC+TGG | 0.627645 | 4.1:+1618263 | MS.gene052663:intron |
| GTTTAAAGGTTGTCACAACA+CGG | 0.631503 | 4.1:+1616592 | MS.gene052663:CDS |
| TTCGCTACCTCAACCAAAGG+GGG | 0.634180 | 4.1:-1612656 | None:intergenic |
| GATTGTCATCTTCAGCACCA+TGG | 0.639774 | 4.1:+1617070 | MS.gene052663:CDS |
| AGTGGTTCCATTCTATATGG+TGG | 0.641876 | 4.1:+1617674 | MS.gene052663:CDS |
| GCAGGATTAGGAGATGTAAG+TGG | 0.642995 | 4.1:+1617656 | MS.gene052663:CDS |
| GCTTCCGCTAGAAGGAGAGG+TGG | 0.643058 | 4.1:-1616532 | None:intergenic |
| GAGCCGCAAATAAAAGGCAA+AGG | 0.643744 | 4.1:+1617783 | MS.gene052663:CDS |
| AAAGGGCGTCTGGCAAACTG+TGG | 0.645972 | 4.1:+1617003 | MS.gene052663:CDS |
| ATAAGCCAAATTGTTCAGCT+GGG | 0.646096 | 4.1:+1619045 | MS.gene052663:CDS |
| ACTGACAACGAGACCAGCGT+TGG | 0.648890 | 4.1:-1611983 | None:intergenic |
| GTCATCGTAACCCCATCGGA+TGG | 0.648967 | 4.1:-1615820 | None:intergenic |
| TTGGAGGTGATGCATCCGAA+AGG | 0.650794 | 4.1:-1616740 | None:intergenic |
| CATGGAGGTAGACAATCAAG+TGG | 0.653447 | 4.1:+1616387 | MS.gene052663:CDS |
| GCTTATATCTGCTCTAATGG+AGG | 0.653828 | 4.1:+1618118 | MS.gene052663:CDS |
| TTATTCTACTCACCCTAGAG+AGG | 0.654466 | 4.1:+1612083 | MS.gene052663:CDS |
| TGTGGCCATCACGACCAGCA+AGG | 0.655087 | 4.1:-1615876 | None:intergenic |
| GGTCTTGCAAAATCAAAGCA+CGG | 0.657151 | 4.1:+1613507 | MS.gene052663:CDS |
| GGTATTGTATAATCTGGCAA+CGG | 0.658098 | 4.1:-1615799 | None:intergenic |
| TGCAGAATTAGCTGCCATGG+AGG | 0.658293 | 4.1:+1617820 | MS.gene052663:CDS |
| ACACGGCCTTCTCCTCCTTG+GGG | 0.659201 | 4.1:+1616609 | MS.gene052663:CDS |
| AAGGGCGTCTGGCAAACTGT+GGG | 0.660618 | 4.1:+1617004 | MS.gene052663:CDS |
| GTGTCCTGAATATAGTGGCG+AGG | 0.666227 | 4.1:+1613464 | MS.gene052663:CDS |
| TACACTGGTACAGATGGTAG+GGG | 0.666518 | 4.1:+1618278 | MS.gene052663:CDS |
| AGTCACAGCAGCTCTCTCCA+GGG | 0.666999 | 4.1:-1618390 | None:intergenic |
| AGACCGCCACTAACACCCCA+AGG | 0.667315 | 4.1:-1616624 | None:intergenic |
| ATCTGGTAGAGGTAAAACAT+CGG | 0.667887 | 4.1:-1616907 | None:intergenic |
| TGGGGTTACGATGACAAGTG+TGG | 0.668689 | 4.1:+1615828 | MS.gene052663:CDS |
| GGATCTCTCATTGAAAGTCG+AGG | 0.671076 | 4.1:+1616689 | MS.gene052663:CDS |
| TAAGATCTAGAAGGAACCAG+AGG | 0.671121 | 4.1:+1617612 | MS.gene052663:CDS |
| CCTGTTCCTAGATTACCTGA+TGG | 0.672525 | 4.1:-1616813 | None:intergenic |
| CTATCCACCTCTCCTTCTAG+CGG | 0.675230 | 4.1:+1616528 | MS.gene052663:CDS |
| CCCAACATATACTGCCAAGG+AGG | 0.676631 | 4.1:+1617045 | MS.gene052663:CDS |
| ATATAAGCCTTGTAGCAAGA+CGG | 0.677301 | 4.1:-1618103 | None:intergenic |
| TCTAGAAGGAACCAGAGGAG+AGG | 0.679190 | 4.1:+1617617 | MS.gene052663:CDS |
| GGTTGAGGTAGCGAATACAT+GGG | 0.689973 | 4.1:+1612664 | MS.gene052663:CDS |
| AATGAATTGTTGGAGTATGG+AGG | 0.690712 | 4.1:+1619135 | MS.gene052663:CDS |
| GTAATCTAGGAACAGGTACG+AGG | 0.690748 | 4.1:+1616820 | MS.gene052663:CDS |
| ACCACTTATCAAAACGCCAG+AGG | 0.691648 | 4.1:-1612802 | None:intergenic |
| AGAGCCAAATTCCTTCCGTG+AGG | 0.698450 | 4.1:-1618968 | None:intergenic |
| TCTTATTGAAAGATACAATG+CGG | 0.704503 | 4.1:+1612700 | MS.gene052663:CDS |
| ATTCGCTACCTCAACCAAAG+GGG | 0.712229 | 4.1:-1612657 | None:intergenic |
| CACAAAGATGCACATCATGG+AGG | 0.714834 | 4.1:+1616372 | MS.gene052663:CDS |
| AGATGGCCAATACCTCAACA+GGG | 0.726892 | 4.1:-1613572 | None:intergenic |
| TTATACAATACCATCCGATG+GGG | 0.731321 | 4.1:+1615810 | MS.gene052663:CDS |
| GATGGCCAATACCTCAACAG+GGG | 0.742049 | 4.1:-1613571 | None:intergenic |
| CCGCCACTAACACCCCAAGG+AGG | 0.760733 | 4.1:-1616621 | None:intergenic |
| TGTATGCAGACTATCCATCG+GGG | 0.803566 | 4.1:+1617544 | MS.gene052663:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 1611946 | 1619567 | 1611946 | ID=MS.gene052663 |
| chr4.1 | mRNA | 1611946 | 1619567 | 1611946 | ID=MS.gene052663.t1;Parent=MS.gene052663 |
| chr4.1 | exon | 1611946 | 1612104 | 1611946 | ID=MS.gene052663.t1.exon1;Parent=MS.gene052663.t1 |
| chr4.1 | CDS | 1611946 | 1612104 | 1611946 | ID=cds.MS.gene052663.t1;Parent=MS.gene052663.t1 |
| chr4.1 | exon | 1612653 | 1612822 | 1612653 | ID=MS.gene052663.t1.exon2;Parent=MS.gene052663.t1 |
| chr4.1 | CDS | 1612653 | 1612822 | 1612653 | ID=cds.MS.gene052663.t1;Parent=MS.gene052663.t1 |
| chr4.1 | exon | 1613455 | 1613581 | 1613455 | ID=MS.gene052663.t1.exon3;Parent=MS.gene052663.t1 |
| chr4.1 | CDS | 1613455 | 1613581 | 1613455 | ID=cds.MS.gene052663.t1;Parent=MS.gene052663.t1 |
| chr4.1 | exon | 1615727 | 1615989 | 1615727 | ID=MS.gene052663.t1.exon4;Parent=MS.gene052663.t1 |
| chr4.1 | CDS | 1615727 | 1615989 | 1615727 | ID=cds.MS.gene052663.t1;Parent=MS.gene052663.t1 |
| chr4.1 | exon | 1616191 | 1617841 | 1616191 | ID=MS.gene052663.t1.exon5;Parent=MS.gene052663.t1 |
| chr4.1 | CDS | 1616191 | 1617841 | 1616191 | ID=cds.MS.gene052663.t1;Parent=MS.gene052663.t1 |
| chr4.1 | exon | 1617927 | 1618139 | 1617927 | ID=MS.gene052663.t1.exon6;Parent=MS.gene052663.t1 |
| chr4.1 | CDS | 1617927 | 1618139 | 1617927 | ID=cds.MS.gene052663.t1;Parent=MS.gene052663.t1 |
| chr4.1 | exon | 1618275 | 1618522 | 1618275 | ID=MS.gene052663.t1.exon7;Parent=MS.gene052663.t1 |
| chr4.1 | CDS | 1618275 | 1618522 | 1618275 | ID=cds.MS.gene052663.t1;Parent=MS.gene052663.t1 |
| chr4.1 | exon | 1618798 | 1619192 | 1618798 | ID=MS.gene052663.t1.exon8;Parent=MS.gene052663.t1 |
| chr4.1 | CDS | 1618798 | 1619192 | 1618798 | ID=cds.MS.gene052663.t1;Parent=MS.gene052663.t1 |
| chr4.1 | exon | 1619414 | 1619567 | 1619414 | ID=MS.gene052663.t1.exon9;Parent=MS.gene052663.t1 |
| chr4.1 | CDS | 1619414 | 1619567 | 1619414 | ID=cds.MS.gene052663.t1;Parent=MS.gene052663.t1 |
| Gene Sequence |
| Protein sequence |
