Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060995.t1 | XP_003609763.1 | 98.1 | 308 | 5 | 1 | 1 | 308 | 1 | 307 | 1.80E-161 | 578.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060995.t1 | Q9LSP7 | 64.9 | 308 | 104 | 3 | 1 | 306 | 1 | 306 | 1.2e-102 | 374.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060995.t1 | G7JMU6 | 98.1 | 308 | 5 | 1 | 1 | 308 | 1 | 307 | 1.3e-161 | 578.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060995 | MS.gene060997 | 0.865241 | 6.81E-65 | -1.69E-46 |
| MS.gene060995 | MS.gene061001 | 0.849588 | 2.94E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060995.t1 | MTR_4g121960 | 98.052 | 308 | 5 | 1 | 1 | 308 | 1 | 307 | 0.0 | 616 |
| MS.gene060995.t1 | MTR_8g023380 | 34.715 | 193 | 117 | 4 | 11 | 200 | 6 | 192 | 4.81e-34 | 124 |
| MS.gene060995.t1 | MTR_5g075580 | 34.454 | 119 | 68 | 4 | 11 | 125 | 2 | 114 | 4.22e-18 | 79.7 |
| MS.gene060995.t1 | MTR_3g062450 | 34.454 | 119 | 68 | 4 | 11 | 125 | 2 | 114 | 4.35e-18 | 79.7 |
| MS.gene060995.t1 | MTR_7g116940 | 34.454 | 119 | 68 | 4 | 11 | 125 | 2 | 114 | 8.62e-18 | 79.0 |
| MS.gene060995.t1 | MTR_1g021150 | 34.188 | 117 | 71 | 3 | 11 | 125 | 2 | 114 | 2.46e-17 | 77.8 |
| MS.gene060995.t1 | MTR_4g073240 | 33.613 | 119 | 69 | 4 | 11 | 125 | 2 | 114 | 3.86e-17 | 77.4 |
| MS.gene060995.t1 | MTR_8g071040 | 33.333 | 117 | 72 | 3 | 11 | 125 | 2 | 114 | 4.40e-17 | 77.0 |
| MS.gene060995.t1 | MTR_7g116940 | 34.400 | 125 | 67 | 4 | 11 | 125 | 2 | 121 | 4.14e-16 | 74.7 |
| MS.gene060995.t1 | MTR_3g110110 | 35.398 | 113 | 63 | 4 | 14 | 120 | 7 | 115 | 9.44e-16 | 73.6 |
| MS.gene060995.t1 | MTR_7g116940 | 35.455 | 110 | 62 | 3 | 11 | 116 | 2 | 106 | 1.19e-15 | 72.8 |
| MS.gene060995.t1 | MTR_4g108080 | 29.457 | 129 | 81 | 4 | 7 | 130 | 1 | 124 | 8.77e-12 | 62.4 |
| MS.gene060995.t1 | MTR_2g078010 | 30.328 | 122 | 75 | 4 | 13 | 129 | 8 | 124 | 9.94e-12 | 62.4 |
| MS.gene060995.t1 | MTR_1g021150 | 34.043 | 94 | 56 | 3 | 34 | 125 | 33 | 122 | 1.30e-11 | 62.0 |
| MS.gene060995.t1 | MTR_4g076200 | 29.655 | 145 | 84 | 5 | 11 | 144 | 33 | 170 | 1.42e-11 | 62.8 |
| MS.gene060995.t1 | MTR_2g078010 | 30.328 | 122 | 75 | 4 | 13 | 129 | 8 | 124 | 1.67e-11 | 62.0 |
| MS.gene060995.t1 | MTR_8g468530 | 29.457 | 129 | 81 | 4 | 7 | 130 | 17 | 140 | 1.69e-11 | 62.0 |
| MS.gene060995.t1 | MTR_4g108080 | 29.825 | 114 | 71 | 3 | 7 | 116 | 1 | 109 | 2.66e-11 | 60.5 |
| MS.gene060995.t1 | MTR_2g078010 | 31.193 | 109 | 66 | 3 | 13 | 117 | 8 | 111 | 4.17e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060995.t1 | AT3G17000 | 65.605 | 314 | 92 | 6 | 1 | 306 | 1 | 306 | 3.29e-137 | 390 |
| MS.gene060995.t1 | AT1G17280 | 35.567 | 194 | 105 | 4 | 11 | 204 | 6 | 179 | 3.77e-34 | 125 |
| MS.gene060995.t1 | AT1G17280 | 35.567 | 194 | 105 | 4 | 11 | 204 | 6 | 179 | 3.77e-34 | 125 |
| MS.gene060995.t1 | AT1G17280 | 35.567 | 194 | 105 | 4 | 11 | 204 | 6 | 179 | 3.77e-34 | 125 |
| MS.gene060995.t1 | AT1G17280 | 35.567 | 194 | 105 | 4 | 11 | 204 | 6 | 179 | 3.77e-34 | 125 |
| MS.gene060995.t1 | AT1G17280 | 35.567 | 194 | 105 | 4 | 11 | 204 | 6 | 179 | 3.77e-34 | 125 |
| MS.gene060995.t1 | AT1G17280 | 35.567 | 194 | 105 | 4 | 11 | 204 | 6 | 179 | 3.77e-34 | 125 |
| MS.gene060995.t1 | AT1G17280 | 35.567 | 194 | 105 | 4 | 11 | 204 | 6 | 179 | 3.77e-34 | 125 |
| MS.gene060995.t1 | AT1G17280 | 35.567 | 194 | 105 | 4 | 11 | 204 | 6 | 179 | 3.77e-34 | 125 |
| MS.gene060995.t1 | AT5G50430 | 40.741 | 135 | 79 | 1 | 11 | 145 | 6 | 139 | 1.92e-33 | 123 |
| MS.gene060995.t1 | AT5G50430 | 40.741 | 135 | 79 | 1 | 11 | 145 | 6 | 139 | 1.92e-33 | 123 |
| MS.gene060995.t1 | AT1G17280 | 34.500 | 200 | 105 | 5 | 11 | 204 | 6 | 185 | 1.32e-31 | 118 |
| MS.gene060995.t1 | AT5G50430 | 37.778 | 135 | 70 | 2 | 11 | 145 | 6 | 126 | 6.31e-27 | 105 |
| MS.gene060995.t1 | AT3G08690 | 35.043 | 117 | 70 | 3 | 11 | 125 | 2 | 114 | 7.75e-19 | 82.0 |
| MS.gene060995.t1 | AT3G08690 | 35.043 | 117 | 70 | 3 | 11 | 125 | 2 | 114 | 7.75e-19 | 82.0 |
| MS.gene060995.t1 | AT5G41700 | 35.294 | 119 | 67 | 4 | 11 | 125 | 2 | 114 | 1.69e-18 | 80.9 |
| MS.gene060995.t1 | AT5G41700 | 35.294 | 119 | 67 | 4 | 11 | 125 | 2 | 114 | 1.69e-18 | 80.9 |
| MS.gene060995.t1 | AT5G41700 | 35.294 | 119 | 67 | 4 | 11 | 125 | 2 | 114 | 1.69e-18 | 80.9 |
| MS.gene060995.t1 | AT5G53300 | 35.294 | 119 | 67 | 4 | 11 | 125 | 2 | 114 | 1.93e-18 | 80.9 |
| MS.gene060995.t1 | AT5G53300 | 35.294 | 119 | 67 | 4 | 11 | 125 | 2 | 114 | 1.93e-18 | 80.9 |
| MS.gene060995.t1 | AT5G53300 | 35.294 | 119 | 67 | 4 | 11 | 125 | 2 | 114 | 1.93e-18 | 80.9 |
| MS.gene060995.t1 | AT4G27960 | 34.454 | 119 | 68 | 4 | 11 | 125 | 2 | 114 | 3.64e-18 | 80.1 |
| MS.gene060995.t1 | AT1G64230 | 34.454 | 119 | 68 | 4 | 11 | 125 | 2 | 114 | 4.42e-18 | 79.7 |
| MS.gene060995.t1 | AT1G64230 | 34.454 | 119 | 68 | 4 | 11 | 125 | 2 | 114 | 4.42e-18 | 79.7 |
| MS.gene060995.t1 | AT2G16740 | 34.454 | 119 | 68 | 4 | 11 | 125 | 2 | 114 | 1.26e-17 | 78.6 |
| MS.gene060995.t1 | AT5G41700 | 35.000 | 120 | 67 | 5 | 11 | 125 | 2 | 115 | 2.03e-17 | 78.2 |
| MS.gene060995.t1 | AT4G27960 | 34.454 | 119 | 68 | 4 | 11 | 125 | 32 | 144 | 5.38e-17 | 77.8 |
| MS.gene060995.t1 | AT1G64230 | 32.031 | 128 | 68 | 5 | 11 | 125 | 2 | 123 | 2.33e-16 | 75.5 |
| MS.gene060995.t1 | AT5G56150 | 33.613 | 119 | 69 | 4 | 11 | 125 | 2 | 114 | 4.61e-16 | 74.3 |
| MS.gene060995.t1 | AT3G08700 | 33.051 | 118 | 72 | 4 | 11 | 125 | 2 | 115 | 1.10e-15 | 73.6 |
| MS.gene060995.t1 | AT3G08700 | 33.051 | 118 | 72 | 4 | 11 | 125 | 2 | 115 | 1.10e-15 | 73.6 |
| MS.gene060995.t1 | AT5G41700 | 36.893 | 103 | 56 | 3 | 11 | 109 | 2 | 99 | 1.15e-15 | 73.2 |
| MS.gene060995.t1 | AT5G53300 | 36.893 | 103 | 56 | 3 | 11 | 109 | 2 | 99 | 1.15e-15 | 72.0 |
| MS.gene060995.t1 | AT5G25760 | 35.398 | 113 | 63 | 4 | 14 | 120 | 7 | 115 | 3.06e-15 | 72.4 |
| MS.gene060995.t1 | AT5G25760 | 35.398 | 113 | 63 | 4 | 14 | 120 | 7 | 115 | 3.06e-15 | 72.4 |
| MS.gene060995.t1 | AT5G56150 | 33.333 | 114 | 66 | 4 | 11 | 120 | 2 | 109 | 5.73e-14 | 67.4 |
| MS.gene060995.t1 | AT1G16890 | 31.148 | 122 | 74 | 4 | 13 | 129 | 8 | 124 | 4.42e-12 | 63.5 |
| MS.gene060995.t1 | AT1G64230 | 32.323 | 99 | 57 | 4 | 31 | 125 | 64 | 156 | 4.49e-12 | 64.3 |
| MS.gene060995.t1 | AT1G64230 | 32.323 | 99 | 57 | 4 | 31 | 125 | 64 | 156 | 4.49e-12 | 64.3 |
| MS.gene060995.t1 | AT1G36340 | 36.190 | 105 | 61 | 3 | 7 | 109 | 5 | 105 | 4.74e-12 | 63.5 |
| MS.gene060995.t1 | AT1G36340 | 36.190 | 105 | 61 | 3 | 7 | 109 | 5 | 105 | 4.74e-12 | 63.5 |
| MS.gene060995.t1 | AT3G13550 | 33.654 | 104 | 68 | 1 | 13 | 116 | 39 | 141 | 5.77e-12 | 63.5 |
| MS.gene060995.t1 | AT1G14400 | 29.457 | 129 | 81 | 4 | 7 | 130 | 1 | 124 | 5.95e-12 | 63.2 |
| MS.gene060995.t1 | AT1G14400 | 29.457 | 129 | 81 | 4 | 7 | 130 | 1 | 124 | 5.95e-12 | 63.2 |
| MS.gene060995.t1 | AT2G02760 | 29.457 | 129 | 81 | 4 | 7 | 130 | 1 | 124 | 7.84e-12 | 62.8 |
| MS.gene060995.t1 | AT2G02760 | 29.457 | 129 | 81 | 4 | 7 | 130 | 1 | 124 | 7.84e-12 | 62.8 |
| MS.gene060995.t1 | AT2G02760 | 29.457 | 129 | 81 | 4 | 7 | 130 | 1 | 124 | 7.84e-12 | 62.8 |
| MS.gene060995.t1 | AT2G02760 | 29.457 | 129 | 81 | 4 | 7 | 130 | 1 | 124 | 7.84e-12 | 62.8 |
| MS.gene060995.t1 | AT3G13550 | 33.654 | 104 | 68 | 1 | 13 | 116 | 39 | 141 | 8.08e-12 | 63.5 |
| MS.gene060995.t1 | AT1G78870 | 30.328 | 122 | 75 | 4 | 13 | 129 | 8 | 124 | 9.95e-12 | 62.4 |
| MS.gene060995.t1 | AT3G24515 | 34.211 | 114 | 67 | 5 | 46 | 152 | 51 | 163 | 4.18e-11 | 63.5 |
| MS.gene060995.t1 | AT3G24515 | 34.211 | 114 | 67 | 5 | 46 | 152 | 76 | 188 | 5.28e-11 | 63.5 |
| MS.gene060995.t1 | AT1G78870 | 31.132 | 106 | 64 | 3 | 13 | 114 | 8 | 108 | 5.30e-11 | 59.3 |
Find 0 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTATATAATTTACTTTT+TGG | - | 32437:21097-21116 | MS.gene060995:CDS | 10.0% |
| !!! | TTTTTTTTCAAATTCAATTA+AGG | - | 32437:21209-21228 | MS.gene060995:intron | 10.0% |
| !! | ATATCAATCCTATTATATAA+AGG | + | 32437:21354-21373 | None:intergenic | 15.0% |
| !! | ATATTATAAAAAATGCTTCA+GGG | + | 32437:22106-22125 | None:intergenic | 15.0% |
| !! | GAAGAAATTTATTAAATCTA+CGG | - | 32437:22538-22557 | MS.gene060995:CDS | 15.0% |
| !! | TATCAATCCTATTATATAAA+GGG | + | 32437:21353-21372 | None:intergenic | 15.0% |
| !! | TGAATTTGAAAAAAAATTCA+TGG | + | 32437:21205-21224 | None:intergenic | 15.0% |
| !! | AAAAAAAGTAACACTTAACA+TGG | + | 32437:22076-22095 | None:intergenic | 20.0% |
| !! | AAATTGAAAAACCCTAAAAT+TGG | + | 32437:20561-20580 | None:intergenic | 20.0% |
| !! | ATAAAAAACAACAAGATTCA+TGG | + | 32437:21294-21313 | None:intergenic | 20.0% |
| !! | ATTTGAAAAAAAATTCATGG+AGG | + | 32437:21202-21221 | None:intergenic | 20.0% |
| !! | GATATTATAAAAAATGCTTC+AGG | + | 32437:22107-22126 | None:intergenic | 20.0% |
| !! | GTAATTTCCCTTTATATAAT+AGG | - | 32437:21343-21362 | MS.gene060995:intron | 20.0% |
| !! | TGATTAATATTGTGTTTGAT+TGG | - | 32437:20601-20620 | MS.gene060995:CDS | 20.0% |
| !! | TGTGATAAATACTATTAAGA+GGG | + | 32437:21747-21766 | None:intergenic | 20.0% |
| !! | TTCAGGAAAATATATTTGAA+TGG | - | 32437:20625-20644 | MS.gene060995:CDS | 20.0% |
| !! | TTGTGATAAATACTATTAAG+AGG | + | 32437:21748-21767 | None:intergenic | 20.0% |
| ! | AACAAAGTATGAATCTTCAA+TGG | + | 32437:21771-21790 | None:intergenic | 25.0% |
| ! | AGTATATAGTCTATGTCAAA+TGG | - | 32437:21471-21490 | MS.gene060995:intron | 25.0% |
| ! | GTATATAGTCTATGTCAAAT+GGG | - | 32437:21472-21491 | MS.gene060995:intron | 25.0% |
| ! | GTGATAAATACTATTAAGAG+GGG | + | 32437:21746-21765 | None:intergenic | 25.0% |
| ! | TAGATTACAAAAAAGAAGAC+AGG | - | 32437:21911-21930 | MS.gene060995:intron | 25.0% |
| ! | TTTATTAAATCTACGGAACA+TGG | - | 32437:22545-22564 | MS.gene060995:CDS | 25.0% |
| !!! | TGTATATGTTGTTTCTACAA+TGG | - | 32437:21574-21593 | MS.gene060995:intron | 25.0% |
| AAAAAAAATTCATGGAGGAC+TGG | + | 32437:21197-21216 | None:intergenic | 30.0% | |
| AAAAACCCTAAAATTGGCAA+AGG | + | 32437:20555-20574 | None:intergenic | 30.0% | |
| AAAACCCTAAAATTGGCAAA+GGG | + | 32437:20554-20573 | None:intergenic | 30.0% | |
| AACATGGTTTAATCAACATG+AGG | + | 32437:22060-22079 | None:intergenic | 30.0% | |
| AGATTCATGGAAATCTAGAT+AGG | + | 32437:21281-21300 | None:intergenic | 30.0% | |
| CAAAGGGTAAAAAGTGAAAA+AGG | + | 32437:20538-20557 | None:intergenic | 30.0% | |
| TAGCATATACTCATGTATCT+GGG | + | 32437:22153-22172 | None:intergenic | 30.0% | |
| TATGTTGTGTTTAAGTGGAT+TGG | - | 32437:21121-21140 | MS.gene060995:CDS | 30.0% | |
| TGAATGGCAATTTGCAATTA+GGG | - | 32437:20641-20660 | MS.gene060995:CDS | 30.0% | |
| TTAGCATATACTCATGTATC+TGG | + | 32437:22154-22173 | None:intergenic | 30.0% | |
| TTGAATGGCAATTTGCAATT+AGG | - | 32437:20640-20659 | MS.gene060995:CDS | 30.0% | |
| TTGGATATGTTGTGTTTAAG+TGG | - | 32437:21116-21135 | MS.gene060995:CDS | 30.0% | |
| ! | TTGTTATGTTTTCAGCCTAA+TGG | - | 32437:20870-20889 | MS.gene060995:intron | 30.0% |
| ! | TTTACCCTTTGCCAATTTTA+GGG | - | 32437:20547-20566 | MS.gene060995:CDS | 30.0% |
| ! | TTTTACCCTTTGCCAATTTT+AGG | - | 32437:20546-20565 | MS.gene060995:CDS | 30.0% |
| !! | ATACTCTCACTTTTAATGAC+AGG | + | 32437:21425-21444 | None:intergenic | 30.0% |
| !! | CATTAGTCGACTTTTATGTA+GGG | - | 32437:21391-21410 | MS.gene060995:intron | 30.0% |
| !! | TATTGTGTTTGATTGGTTTC+AGG | - | 32437:20608-20627 | MS.gene060995:CDS | 30.0% |
| !! | TCATTAGTCGACTTTTATGT+AGG | - | 32437:21390-21409 | MS.gene060995:intron | 30.0% |
| !!! | ATTGGTTTTGCAATCCAAAA+AGG | - | 32437:21139-21158 | MS.gene060995:CDS | 30.0% |
| AATTGCAGATTCGTGTAAGA+TGG | - | 32437:21071-21090 | MS.gene060995:CDS | 35.0% | |
| ACAGTCAACAACATAAACGA+AGG | + | 32437:20744-20763 | None:intergenic | 35.0% | |
| ACATGAGTATATGCTAAGCA+AGG | - | 32437:22157-22176 | MS.gene060995:intron | 35.0% | |
| ACGTCAAAAACTGATTGATG+AGG | - | 32437:21987-22006 | MS.gene060995:intron | 35.0% | |
| ATAAACGAAGGAGGTTTGAA+TGG | + | 32437:20732-20751 | None:intergenic | 35.0% | |
| ATCTTGTACCAATTGCACTT+TGG | - | 32437:22124-22143 | MS.gene060995:intron | 35.0% | |
| CTTCTTGCTCTTCAACTATT+CGG | + | 32437:22316-22335 | None:intergenic | 35.0% | |
| GAATGGCAATTTGCAATTAG+GGG | - | 32437:20642-20661 | MS.gene060995:CDS | 35.0% | |
| GTTTCAAATGAGATTCCATC+CGG | - | 32437:22374-22393 | MS.gene060995:intron | 35.0% | |
| TAGTCTATGTCAAATGGGAA+TGG | - | 32437:21477-21496 | MS.gene060995:intron | 35.0% | |
| TCTAGATAGGTCACTTCAAT+AGG | + | 32437:21268-21287 | None:intergenic | 35.0% | |
| TGCAATCCAAAAAGGATTAG+CGG | - | 32437:21147-21166 | MS.gene060995:CDS | 35.0% | |
| TTTGAAGGCGGAATTTATCA+TGG | - | 32437:20681-20700 | MS.gene060995:CDS | 35.0% | |
| TTTGTAATCTAATGAGCCCA+AGG | + | 32437:21902-21921 | None:intergenic | 35.0% | |
| TTTGTTTGGGAGTAGTACAT+TGG | - | 32437:20977-20996 | MS.gene060995:intron | 35.0% | |
| ! | AAAATCTGAAGCAAGAGACA+AGG | - | 32437:22441-22460 | MS.gene060995:intron | 35.0% |
| ! | AAATCTGAAGCAAGAGACAA+GGG | - | 32437:22442-22461 | MS.gene060995:intron | 35.0% |
| ! | AGGATTTTGCTGAGTAACTT+GGG | + | 32437:22249-22268 | None:intergenic | 35.0% |
| ! | GTGAAGCATCTCCAAAATTT+GGG | - | 32437:21956-21975 | MS.gene060995:intron | 35.0% |
| ! | TCAATCAGTTTTTGACGTTC+AGG | + | 32437:21985-22004 | None:intergenic | 35.0% |
| ! | TTCTGAAGAACCCAAAAATG+AGG | - | 32437:22214-22233 | MS.gene060995:intron | 35.0% |
| !! | AAATTTTGGAGATGCTTCAC+GGG | + | 32437:21956-21975 | None:intergenic | 35.0% |
| !! | AAGTGAGAGTATGTTTTGCT+AGG | - | 32437:21433-21452 | MS.gene060995:intron | 35.0% |
| !! | CAAATTTTGGAGATGCTTCA+CGG | + | 32437:21957-21976 | None:intergenic | 35.0% |
| !! | TGGACTTGCTATAGCTATTA+TGG | - | 32437:22505-22524 | MS.gene060995:CDS | 35.0% |
| !!! | CTTGTTTTCGTGTCATTTGA+GGG | - | 32437:21504-21523 | MS.gene060995:intron | 35.0% |
| !!! | TTGTTTTCGTGTCATTTGAG+GGG | - | 32437:21505-21524 | MS.gene060995:intron | 35.0% |
| AAGGCGGAATTTATCATGGA+AGG | - | 32437:20685-20704 | MS.gene060995:CDS | 40.0% | |
| AGATGCTTCACGGGATTTAA+TGG | + | 32437:21947-21966 | None:intergenic | 40.0% | |
| AGTTACTCAGCAAAATCCTG+AGG | - | 32437:22250-22269 | MS.gene060995:intron | 40.0% | |
| ATTACGACTAACATGCACTG+TGG | + | 32437:22036-22055 | None:intergenic | 40.0% | |
| ATTGCATCTCTTTGACCTCT+TGG | + | 32437:20474-20493 | None:intergenic | 40.0% | |
| CAAATCATCATCCTGAGCAT+TGG | - | 32437:20931-20950 | MS.gene060995:intron | 40.0% | |
| CCACGTGAAACTGAATTTGA+AGG | - | 32437:20666-20685 | MS.gene060995:CDS | 40.0% | |
| CCTTCAAATTCAGTTTCACG+TGG | + | 32437:20669-20688 | None:intergenic | 40.0% | |
| CGTGAAACTGAATTTGAAGG+CGG | - | 32437:20669-20688 | MS.gene060995:CDS | 40.0% | |
| GGAGTGGTGAGTATTTGTTT+GGG | - | 32437:20964-20983 | MS.gene060995:intron | 40.0% | |
| GGTTTGAATGGATATTCAGC+AGG | + | 32437:20720-20739 | None:intergenic | 40.0% | |
| GTCAACAACATAAACGAAGG+AGG | + | 32437:20741-20760 | None:intergenic | 40.0% | |
| TGAAGAACCCAAAAATGAGG+AGG | - | 32437:22217-22236 | MS.gene060995:intron | 40.0% | |
| TGGAGTGGTGAGTATTTGTT+TGG | - | 32437:20963-20982 | MS.gene060995:intron | 40.0% | |
| TTACGACTAACATGCACTGT+GGG | + | 32437:22035-22054 | None:intergenic | 40.0% | |
| TTGAAACTTCAACTCCTGCA+GGG | + | 32437:22361-22380 | None:intergenic | 40.0% | |
| ! | CAGGATTTTGCTGAGTAACT+TGG | + | 32437:22250-22269 | None:intergenic | 40.0% |
| ! | CATGGAGCAGTTTTCATGAA+TGG | - | 32437:22563-22582 | MS.gene060995:CDS | 40.0% |
| ! | CGTGAAGCATCTCCAAAATT+TGG | - | 32437:21955-21974 | MS.gene060995:intron | 40.0% |
| ! | TTGCTTCAGATTTTGAACCC+TGG | + | 32437:22435-22454 | None:intergenic | 40.0% |
| ! | TTTGAAACTTCAACTCCTGC+AGG | + | 32437:22362-22381 | None:intergenic | 40.0% |
| !!! | GCTTGTTTTCGTGTCATTTG+AGG | - | 32437:21503-21522 | MS.gene060995:intron | 40.0% |
| AAAAAGGAACCTCGAGAGGA+AGG | + | 32437:20522-20541 | None:intergenic | 45.0% | |
| AAATACTCACCACTCCACGA+TGG | + | 32437:20960-20979 | None:intergenic | 45.0% | |
| AACCCTGGTATCTGACTTTC+GGG | + | 32437:22420-22439 | None:intergenic | 45.0% | |
| AATGCTAATCCTAACCCTGC+AGG | - | 32437:22344-22363 | MS.gene060995:CDS | 45.0% | |
| AGAGTGAACAATCGGTCATC+AGG | + | 32437:22476-22495 | None:intergenic | 45.0% | |
| AGGAAGGCTCATGAAGTCAT+CGG | + | 32437:20506-20525 | None:intergenic | 45.0% | |
| AGTGAAAAAGGAACCTCGAG+AGG | + | 32437:20526-20545 | None:intergenic | 45.0% | |
| CTGGGATTCCAAAGTGCAAT+TGG | + | 32437:22135-22154 | None:intergenic | 45.0% | |
| GAACCCTGGTATCTGACTTT+CGG | + | 32437:22421-22440 | None:intergenic | 45.0% | |
| TAGCTGCCAGAGTGAACAAT+CGG | + | 32437:22484-22503 | None:intergenic | 45.0% | |
| TGAAGAATCCAGCTGTGAAG+CGG | - | 32437:20443-20462 | MS.gene060995:CDS | 45.0% | |
| TGACTTTCGGGGCAATTGAT+TGG | + | 32437:22408-22427 | None:intergenic | 45.0% | |
| TGATGACCGATTGTTCACTC+TGG | - | 32437:22475-22494 | MS.gene060995:intron | 45.0% | |
| TGCGTCTCAAAACGACCATT+AGG | + | 32437:20888-20907 | None:intergenic | 45.0% | |
| TTCACGGGATTTAATGGCCA+AGG | + | 32437:21941-21960 | None:intergenic | 45.0% | |
| TTGTTCACTCTGGCAGCTAT+TGG | - | 32437:22485-22504 | MS.gene060995:CDS | 45.0% | |
| ! | AAAATTCATGGAGGACTGGC+AGG | + | 32437:21193-21212 | None:intergenic | 45.0% |
| ! | CAATTGATTGGTTGAGACGC+CGG | + | 32437:22396-22415 | None:intergenic | 45.0% |
| ! | CATTGCTCGTTTGCTCGTTT+TGG | - | 32437:21039-21058 | MS.gene060995:CDS | 45.0% |
| ! | CGTTCAGGAGTCCCAAATTT+TGG | + | 32437:21970-21989 | None:intergenic | 45.0% |
| !! | GTCTCAGCCTCCTCATTTTT+GGG | + | 32437:22227-22246 | None:intergenic | 45.0% |
| AAAAGAAGACAGGCGTGCCT+TGG | - | 32437:21921-21940 | MS.gene060995:intron | 50.0% | |
| ACCCTGGTATCTGACTTTCG+GGG | + | 32437:22419-22438 | None:intergenic | 50.0% | |
| ACTTCAACTCCTGCAGGGTT+AGG | + | 32437:22356-22375 | None:intergenic | 50.0% | |
| AGGCTCATGAAGTCATCGGA+AGG | + | 32437:20502-20521 | None:intergenic | 50.0% | |
| ATTCGGTCACCTGCTTGATC+TGG | + | 32437:22299-22318 | None:intergenic | 50.0% | |
| GGCTCATGAAGTCATCGGAA+GGG | + | 32437:20501-20520 | None:intergenic | 50.0% | |
| GTTCTTCAGAAGCCTGCAGA+GGG | + | 32437:22205-22224 | None:intergenic | 50.0% | |
| TTCATGCCCACCAACCCAAA+CGG | - | 32437:21874-21893 | MS.gene060995:intron | 50.0% | |
| ! | AGGGCTAGGTTGAGGAACAA+CGG | + | 32437:22186-22205 | None:intergenic | 50.0% |
| ! | GCAGCACCGCTAATCCTTTT+TGG | + | 32437:21156-21175 | None:intergenic | 50.0% |
| ! | GGTCTCAGCCTCCTCATTTT+TGG | + | 32437:22228-22247 | None:intergenic | 50.0% |
| ! | TGTGAAGCGGATTCTCCAAG+AGG | - | 32437:20456-20475 | MS.gene060995:CDS | 50.0% |
| !! | GAGGGTATTCCAGATCAAGC+AGG | - | 32437:22287-22306 | MS.gene060995:CDS | 50.0% |
| ACCAACCCAAACGGTGCCTT+GGG | - | 32437:21883-21902 | MS.gene060995:intron | 55.0% | |
| CACGATGGTTGCCAATGCTC+AGG | + | 32437:20945-20964 | None:intergenic | 55.0% | |
| CATTGGCAACCATCGTGGAG+TGG | - | 32437:20948-20967 | MS.gene060995:intron | 55.0% | |
| CTTCATGAGCCTTCCTCTCG+AGG | - | 32437:20510-20529 | MS.gene060995:CDS | 55.0% | |
| GCCCCGAAAGTCAGATACCA+GGG | - | 32437:22415-22434 | MS.gene060995:intron | 55.0% | |
| GGTTCTTCAGAAGCCTGCAG+AGG | + | 32437:22206-22225 | None:intergenic | 55.0% | |
| TGCCCCGAAAGTCAGATACC+AGG | - | 32437:22414-22433 | MS.gene060995:intron | 55.0% | |
| TGGAGAATCCGCTTCACAGC+TGG | + | 32437:20454-20473 | None:intergenic | 55.0% | |
| ! | TCTGGAATACCCTCTCCTGC+AGG | + | 32437:22281-22300 | None:intergenic | 55.0% |
| ! | TGATTGGTTGAGACGCCGGA+TGG | + | 32437:22392-22411 | None:intergenic | 55.0% |
| !! | AAGGCACCGTTTGGGTTGGT+GGG | + | 32437:21883-21902 | None:intergenic | 55.0% |
| !! | AATGAGCCCAAGGCACCGTT+TGG | + | 32437:21892-21911 | None:intergenic | 55.0% |
| !! | ATGAGCCCAAGGCACCGTTT+GGG | + | 32437:21891-21910 | None:intergenic | 55.0% |
| !! | CGTGTCATTTGAGGGGCGTT+TGG | - | 32437:21512-21531 | MS.gene060995:intron | 55.0% |
| !! | CTGAGCATTGGCAACCATCG+TGG | - | 32437:20943-20962 | MS.gene060995:intron | 55.0% |
| AATCCTGAGGCTCCACCTGC+AGG | - | 32437:22263-22282 | MS.gene060995:CDS | 60.0% | |
| CACCAACCCAAACGGTGCCT+TGG | - | 32437:21882-21901 | MS.gene060995:intron | 60.0% | |
| GGAATACCCTCTCCTGCAGG+TGG | + | 32437:22278-22297 | None:intergenic | 60.0% | |
| TCAGAAGCCTGCAGAGGGCT+AGG | + | 32437:22200-22219 | None:intergenic | 60.0% | |
| TCCTCAACCTAGCCCTCTGC+AGG | - | 32437:22190-22209 | MS.gene060995:intron | 60.0% | |
| !! | CAAGGCACCGTTTGGGTTGG+TGG | + | 32437:21884-21903 | None:intergenic | 60.0% |
| GAGGCTCCACCTGCAGGAGA+GGG | - | 32437:22269-22288 | MS.gene060995:CDS | 65.0% | |
| GCCTGCAGAGGGCTAGGTTG+AGG | + | 32437:22194-22213 | None:intergenic | 65.0% | |
| TCTCCTGCAGGTGGAGCCTC+AGG | + | 32437:22269-22288 | None:intergenic | 65.0% | |
| TGAGGCTCCACCTGCAGGAG+AGG | - | 32437:22268-22287 | MS.gene060995:CDS | 65.0% | |
| !! | GCCCAAGGCACCGTTTGGGT+TGG | + | 32437:21887-21906 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 32437 | gene | 20424 | 22592 | 20424 | ID=MS.gene060995 |
| 32437 | mRNA | 20424 | 22592 | 20424 | ID=MS.gene060995.t1;Parent=MS.gene060995 |
| 32437 | exon | 22485 | 22592 | 22485 | ID=MS.gene060995.t1.exon1;Parent=MS.gene060995.t1 |
| 32437 | CDS | 22485 | 22592 | 22485 | ID=cds.MS.gene060995.t1;Parent=MS.gene060995.t1 |
| 32437 | exon | 22255 | 22386 | 22255 | ID=MS.gene060995.t1.exon2;Parent=MS.gene060995.t1 |
| 32437 | CDS | 22255 | 22386 | 22255 | ID=cds.MS.gene060995.t1;Parent=MS.gene060995.t1 |
| 32437 | exon | 22047 | 22131 | 22047 | ID=MS.gene060995.t1.exon3;Parent=MS.gene060995.t1 |
| 32437 | CDS | 22047 | 22131 | 22047 | ID=cds.MS.gene060995.t1;Parent=MS.gene060995.t1 |
| 32437 | exon | 21008 | 21171 | 21008 | ID=MS.gene060995.t1.exon4;Parent=MS.gene060995.t1 |
| 32437 | CDS | 21008 | 21171 | 21008 | ID=cds.MS.gene060995.t1;Parent=MS.gene060995.t1 |
| 32437 | exon | 20424 | 20861 | 20424 | ID=MS.gene060995.t1.exon5;Parent=MS.gene060995.t1 |
| 32437 | CDS | 20424 | 20861 | 20424 | ID=cds.MS.gene060995.t1;Parent=MS.gene060995.t1 |
| Gene Sequence |
| Protein sequence |
