Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061001.t1 | XP_003609763.1 | 71.1 | 308 | 5 | 2 | 1 | 225 | 1 | 307 | 1.20E-98 | 369.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061001.t1 | Q9LSP7 | 42.2 | 308 | 91 | 4 | 1 | 223 | 1 | 306 | 5.9e-46 | 185.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061001.t1 | G7JMU6 | 71.1 | 308 | 5 | 2 | 1 | 225 | 1 | 307 | 8.6e-99 | 369.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060995 | MS.gene061001 | 0.849588 | 2.94E-60 | -1.69E-46 |
| MS.gene060997 | MS.gene061001 | 0.988989 | 3.13E-176 | -1.69E-46 |
| MS.gene061001 | MS.gene065136 | 0.805694 | 1.18E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061001.t1 | MTR_4g121960 | 95.862 | 145 | 5 | 1 | 81 | 225 | 164 | 307 | 2.13e-91 | 271 |
| MS.gene061001.t1 | MTR_4g121960 | 100.000 | 80 | 0 | 0 | 1 | 80 | 1 | 80 | 1.53e-53 | 174 |
| MS.gene061001.t1 | MTR_5g075580 | 40.000 | 70 | 42 | 0 | 11 | 80 | 2 | 71 | 5.39e-14 | 67.4 |
| MS.gene061001.t1 | MTR_3g062450 | 40.000 | 70 | 42 | 0 | 11 | 80 | 2 | 71 | 5.68e-14 | 67.4 |
| MS.gene061001.t1 | MTR_7g116940 | 40.000 | 70 | 42 | 0 | 11 | 80 | 2 | 71 | 9.23e-14 | 66.6 |
| MS.gene061001.t1 | MTR_7g116940 | 42.188 | 64 | 37 | 0 | 11 | 74 | 2 | 65 | 1.16e-13 | 65.9 |
| MS.gene061001.t1 | MTR_7g116940 | 40.000 | 70 | 42 | 0 | 11 | 80 | 2 | 71 | 1.57e-13 | 66.2 |
| MS.gene061001.t1 | MTR_4g073240 | 38.571 | 70 | 43 | 0 | 11 | 80 | 2 | 71 | 3.67e-13 | 65.1 |
| MS.gene061001.t1 | MTR_8g071040 | 35.714 | 84 | 52 | 1 | 11 | 92 | 2 | 85 | 3.75e-13 | 65.1 |
| MS.gene061001.t1 | MTR_1g021150 | 35.714 | 84 | 52 | 1 | 11 | 92 | 2 | 85 | 4.03e-13 | 65.1 |
| MS.gene061001.t1 | MTR_8g023380 | 34.286 | 70 | 46 | 0 | 11 | 80 | 6 | 75 | 1.15e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061001.t1 | AT3G17000 | 91.358 | 81 | 6 | 1 | 1 | 80 | 1 | 81 | 2.90e-48 | 160 |
| MS.gene061001.t1 | AT3G17000 | 41.333 | 150 | 73 | 5 | 81 | 223 | 165 | 306 | 5.01e-18 | 81.3 |
| MS.gene061001.t1 | AT3G08690 | 38.095 | 84 | 50 | 1 | 11 | 92 | 2 | 85 | 1.47e-14 | 68.9 |
| MS.gene061001.t1 | AT3G08690 | 38.095 | 84 | 50 | 1 | 11 | 92 | 2 | 85 | 1.47e-14 | 68.9 |
| MS.gene061001.t1 | AT5G53300 | 41.429 | 70 | 41 | 0 | 11 | 80 | 2 | 71 | 2.14e-14 | 68.6 |
| MS.gene061001.t1 | AT5G53300 | 41.429 | 70 | 41 | 0 | 11 | 80 | 2 | 71 | 2.14e-14 | 68.6 |
| MS.gene061001.t1 | AT5G53300 | 41.429 | 70 | 41 | 0 | 11 | 80 | 2 | 71 | 2.14e-14 | 68.6 |
| MS.gene061001.t1 | AT5G41700 | 41.429 | 70 | 41 | 0 | 11 | 80 | 2 | 71 | 2.23e-14 | 68.6 |
| MS.gene061001.t1 | AT5G41700 | 41.429 | 70 | 41 | 0 | 11 | 80 | 2 | 71 | 2.23e-14 | 68.6 |
| MS.gene061001.t1 | AT5G41700 | 41.429 | 70 | 41 | 0 | 11 | 80 | 2 | 71 | 2.23e-14 | 68.6 |
| MS.gene061001.t1 | AT5G53300 | 43.750 | 64 | 36 | 0 | 11 | 74 | 2 | 65 | 2.61e-14 | 67.0 |
| MS.gene061001.t1 | AT5G41700 | 43.750 | 64 | 36 | 0 | 11 | 74 | 2 | 65 | 3.22e-14 | 67.8 |
| MS.gene061001.t1 | AT1G64230 | 40.000 | 70 | 42 | 0 | 11 | 80 | 2 | 71 | 3.66e-14 | 67.8 |
| MS.gene061001.t1 | AT1G64230 | 40.000 | 70 | 42 | 0 | 11 | 80 | 2 | 71 | 3.66e-14 | 67.8 |
| MS.gene061001.t1 | AT4G27960 | 40.000 | 70 | 42 | 0 | 11 | 80 | 2 | 71 | 3.89e-14 | 67.8 |
| MS.gene061001.t1 | AT2G16740 | 41.429 | 70 | 41 | 0 | 11 | 80 | 2 | 71 | 4.89e-14 | 67.4 |
| MS.gene061001.t1 | AT5G41700 | 40.845 | 71 | 41 | 1 | 11 | 80 | 2 | 72 | 2.52e-13 | 65.5 |
| MS.gene061001.t1 | AT4G27960 | 42.188 | 64 | 37 | 0 | 11 | 74 | 32 | 95 | 2.73e-13 | 66.2 |
| MS.gene061001.t1 | AT3G08700 | 36.471 | 85 | 51 | 2 | 11 | 92 | 2 | 86 | 1.41e-12 | 63.5 |
| MS.gene061001.t1 | AT3G08700 | 36.471 | 85 | 51 | 2 | 11 | 92 | 2 | 86 | 1.41e-12 | 63.5 |
| MS.gene061001.t1 | AT1G64230 | 35.443 | 79 | 42 | 1 | 11 | 80 | 2 | 80 | 1.77e-12 | 63.5 |
| MS.gene061001.t1 | AT1G17280 | 34.286 | 70 | 46 | 0 | 11 | 80 | 6 | 75 | 8.74e-12 | 63.2 |
| MS.gene061001.t1 | AT1G17280 | 34.286 | 70 | 46 | 0 | 11 | 80 | 6 | 75 | 8.74e-12 | 63.2 |
| MS.gene061001.t1 | AT1G17280 | 34.286 | 70 | 46 | 0 | 11 | 80 | 6 | 75 | 8.74e-12 | 63.2 |
| MS.gene061001.t1 | AT1G17280 | 34.286 | 70 | 46 | 0 | 11 | 80 | 6 | 75 | 8.74e-12 | 63.2 |
| MS.gene061001.t1 | AT1G17280 | 34.286 | 70 | 46 | 0 | 11 | 80 | 6 | 75 | 8.74e-12 | 63.2 |
| MS.gene061001.t1 | AT1G17280 | 34.286 | 70 | 46 | 0 | 11 | 80 | 6 | 75 | 8.74e-12 | 63.2 |
| MS.gene061001.t1 | AT1G17280 | 34.286 | 70 | 46 | 0 | 11 | 80 | 6 | 75 | 8.74e-12 | 63.2 |
| MS.gene061001.t1 | AT1G17280 | 34.286 | 70 | 46 | 0 | 11 | 80 | 6 | 75 | 8.74e-12 | 63.2 |
| MS.gene061001.t1 | AT1G17280 | 34.286 | 70 | 46 | 0 | 11 | 80 | 6 | 75 | 9.71e-12 | 63.2 |
| MS.gene061001.t1 | AT5G56150 | 37.143 | 70 | 44 | 0 | 11 | 80 | 2 | 71 | 9.84e-12 | 61.2 |
| MS.gene061001.t1 | AT5G50430 | 34.286 | 70 | 46 | 0 | 11 | 80 | 6 | 75 | 1.08e-11 | 62.8 |
| MS.gene061001.t1 | AT5G50430 | 34.286 | 70 | 46 | 0 | 11 | 80 | 6 | 75 | 1.08e-11 | 62.8 |
| MS.gene061001.t1 | AT5G56150 | 37.143 | 70 | 44 | 0 | 11 | 80 | 2 | 71 | 1.27e-11 | 60.1 |
| MS.gene061001.t1 | AT3G13550 | 39.706 | 68 | 41 | 0 | 13 | 80 | 39 | 106 | 8.22e-11 | 59.3 |
Find 0 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTATATAATTTACTTTT+TGG | - | 32439:5983-6002 | MS.gene061001:intron | 10.0% |
| !!! | TTTTTTTTCAAATTCAATTA+AGG | - | 32439:6095-6114 | MS.gene061001:intron | 10.0% |
| !! | ATATCAATCCTATTATATAA+AGG | + | 32439:6240-6259 | None:intergenic | 15.0% |
| !! | ATATTATAAAAAATGCTTCA+GGG | + | 32439:6994-7013 | None:intergenic | 15.0% |
| !! | GAAGAAATTTATTAAATCTA+CGG | - | 32439:7426-7445 | MS.gene061001:CDS | 15.0% |
| !! | TATCAATCCTATTATATAAA+GGG | + | 32439:6239-6258 | None:intergenic | 15.0% |
| !! | TGAATTTGAAAAAAAATTCA+TGG | + | 32439:6091-6110 | None:intergenic | 15.0% |
| !! | AAAAAAAGTAACACTTAACA+TGG | + | 32439:6963-6982 | None:intergenic | 20.0% |
| !! | AAATTGAAAAACCCTAAAAT+TGG | + | 32439:5447-5466 | None:intergenic | 20.0% |
| !! | ATAAAAAACAACAAGATTCA+TGG | + | 32439:6180-6199 | None:intergenic | 20.0% |
| !! | ATTTGAAAAAAAATTCATGG+AGG | + | 32439:6088-6107 | None:intergenic | 20.0% |
| !! | GATATTATAAAAAATGCTTC+AGG | + | 32439:6995-7014 | None:intergenic | 20.0% |
| !! | GTAATTTCCCTTTATATAAT+AGG | - | 32439:6229-6248 | MS.gene061001:intron | 20.0% |
| !! | TGATTAATATTGTGTTTGAT+TGG | - | 32439:5487-5506 | MS.gene061001:CDS | 20.0% |
| !! | TGTGATAAATACTATTAAGA+GGG | + | 32439:6633-6652 | None:intergenic | 20.0% |
| !! | TTCAGGAAAATATATTTGAA+TGG | - | 32439:5511-5530 | MS.gene061001:CDS | 20.0% |
| !! | TTGTGATAAATACTATTAAG+AGG | + | 32439:6634-6653 | None:intergenic | 20.0% |
| ! | AACAAAGTATGAATCTTCAA+TGG | + | 32439:6657-6676 | None:intergenic | 25.0% |
| ! | AGTATATAGTCTATGTCAAA+TGG | - | 32439:6357-6376 | MS.gene061001:intron | 25.0% |
| ! | GTATATAGTCTATGTCAAAT+GGG | - | 32439:6358-6377 | MS.gene061001:intron | 25.0% |
| ! | GTGATAAATACTATTAAGAG+GGG | + | 32439:6632-6651 | None:intergenic | 25.0% |
| ! | TAGATTACAAAAAAGAAGAC+AGG | - | 32439:6797-6816 | MS.gene061001:intron | 25.0% |
| ! | TTTATTAAATCTACGGAACA+TGG | - | 32439:7433-7452 | MS.gene061001:CDS | 25.0% |
| !!! | TGTATATGTTGTTTCTACAA+TGG | - | 32439:6460-6479 | MS.gene061001:intron | 25.0% |
| AAAAAAAATTCATGGAGGAC+TGG | + | 32439:6083-6102 | None:intergenic | 30.0% | |
| AAAAACCCTAAAATTGGCAA+AGG | + | 32439:5441-5460 | None:intergenic | 30.0% | |
| AAAACCCTAAAATTGGCAAA+GGG | + | 32439:5440-5459 | None:intergenic | 30.0% | |
| AACATGGTTTAATCAACATG+AGG | + | 32439:6947-6966 | None:intergenic | 30.0% | |
| AGATTCATGGAAATCTAGAT+AGG | + | 32439:6167-6186 | None:intergenic | 30.0% | |
| CAAAGGGTAAAAAGTGAAAA+AGG | + | 32439:5424-5443 | None:intergenic | 30.0% | |
| TAGCATATACTCATGTATCT+GGG | + | 32439:7041-7060 | None:intergenic | 30.0% | |
| TATGTTGTGTTTAAGTGGAT+TGG | - | 32439:6007-6026 | MS.gene061001:intron | 30.0% | |
| TGAATGGCAATTTGCAATTA+GGG | - | 32439:5527-5546 | MS.gene061001:CDS | 30.0% | |
| TTAGCATATACTCATGTATC+TGG | + | 32439:7042-7061 | None:intergenic | 30.0% | |
| TTGAATGGCAATTTGCAATT+AGG | - | 32439:5526-5545 | MS.gene061001:CDS | 30.0% | |
| TTGGATATGTTGTGTTTAAG+TGG | - | 32439:6002-6021 | MS.gene061001:intron | 30.0% | |
| ! | TTGTTATGTTTTCAGCCTAA+TGG | - | 32439:5756-5775 | MS.gene061001:intron | 30.0% |
| ! | TTTACCCTTTGCCAATTTTA+GGG | - | 32439:5433-5452 | MS.gene061001:CDS | 30.0% |
| ! | TTTTACCCTTTGCCAATTTT+AGG | - | 32439:5432-5451 | MS.gene061001:CDS | 30.0% |
| !! | ATACTCTCACTTTTAATGAC+AGG | + | 32439:6311-6330 | None:intergenic | 30.0% |
| !! | CATTAGTCGACTTTTATGTA+GGG | - | 32439:6277-6296 | MS.gene061001:intron | 30.0% |
| !! | TATTGTGTTTGATTGGTTTC+AGG | - | 32439:5494-5513 | MS.gene061001:CDS | 30.0% |
| !! | TCATTAGTCGACTTTTATGT+AGG | - | 32439:6276-6295 | MS.gene061001:intron | 30.0% |
| !!! | ATTGGTTTTGCAATCCAAAA+AGG | - | 32439:6025-6044 | MS.gene061001:intron | 30.0% |
| AATTGCAGATTCGTGTAAGA+TGG | - | 32439:5957-5976 | MS.gene061001:intron | 35.0% | |
| ACAGTCAACAACATAAACGA+AGG | + | 32439:5630-5649 | None:intergenic | 35.0% | |
| ACATGAGTATATGCTAAGCA+AGG | - | 32439:7045-7064 | MS.gene061001:intron | 35.0% | |
| ATAAACGAAGGAGGTTTGAA+TGG | + | 32439:5618-5637 | None:intergenic | 35.0% | |
| ATCTTGTACCAATTGCACTT+TGG | - | 32439:7012-7031 | MS.gene061001:intron | 35.0% | |
| CGTCAAAAAACTGATTGATG+AGG | - | 32439:6874-6893 | MS.gene061001:intron | 35.0% | |
| CTTCTTGCTCTTCAACTATT+CGG | + | 32439:7204-7223 | None:intergenic | 35.0% | |
| GAATGGCAATTTGCAATTAG+GGG | - | 32439:5528-5547 | MS.gene061001:CDS | 35.0% | |
| GTTTCAAATGAGATTCCATC+CGG | - | 32439:7262-7281 | MS.gene061001:intron | 35.0% | |
| TAGTCTATGTCAAATGGGAA+TGG | - | 32439:6363-6382 | MS.gene061001:intron | 35.0% | |
| TCTAGATAGGTCACTTCAAT+AGG | + | 32439:6154-6173 | None:intergenic | 35.0% | |
| TGCAATCCAAAAAGGATTAG+CGG | - | 32439:6033-6052 | MS.gene061001:intron | 35.0% | |
| TTTGAAGGCGGAATTTATCA+TGG | - | 32439:5567-5586 | MS.gene061001:CDS | 35.0% | |
| TTTGTAATCTAATGAGCCCA+AGG | + | 32439:6788-6807 | None:intergenic | 35.0% | |
| TTTGTTTGGGAGTAGTACAT+TGG | - | 32439:5863-5882 | MS.gene061001:intron | 35.0% | |
| ! | AAAATCTGAAGCAAGAGACA+AGG | - | 32439:7329-7348 | MS.gene061001:intron | 35.0% |
| ! | AAATCTGAAGCAAGAGACAA+GGG | - | 32439:7330-7349 | MS.gene061001:intron | 35.0% |
| ! | AGGATTTTGCTGAGTAACTT+GGG | + | 32439:7137-7156 | None:intergenic | 35.0% |
| ! | GTGAAGCATCTCCAAAATTT+GGG | - | 32439:6842-6861 | MS.gene061001:intron | 35.0% |
| ! | TTCTGAAGAACCCAAAAATG+AGG | - | 32439:7102-7121 | MS.gene061001:intron | 35.0% |
| !! | AAATTTTGGAGATGCTTCAC+GGG | + | 32439:6842-6861 | None:intergenic | 35.0% |
| !! | AAGTGAGAGTATGTTTTGCT+AGG | - | 32439:6319-6338 | MS.gene061001:intron | 35.0% |
| !! | CAAATTTTGGAGATGCTTCA+CGG | + | 32439:6843-6862 | None:intergenic | 35.0% |
| !! | TGGACTTGCTATAGCTATTA+TGG | - | 32439:7393-7412 | MS.gene061001:CDS | 35.0% |
| !!! | CAATCAGTTTTTTGACGTTC+AGG | + | 32439:6871-6890 | None:intergenic | 35.0% |
| !!! | CTTGTTTTCGTGTCATTTGA+GGG | - | 32439:6390-6409 | MS.gene061001:intron | 35.0% |
| !!! | TTGTTTTCGTGTCATTTGAG+GGG | - | 32439:6391-6410 | MS.gene061001:intron | 35.0% |
| AAGGCGGAATTTATCATGGA+AGG | - | 32439:5571-5590 | MS.gene061001:CDS | 40.0% | |
| AGATGCTTCACGGGATTTAA+TGG | + | 32439:6833-6852 | None:intergenic | 40.0% | |
| AGTTACTCAGCAAAATCCTG+AGG | - | 32439:7138-7157 | MS.gene061001:intron | 40.0% | |
| ATTACGACTAACATGCACTG+TGG | + | 32439:6923-6942 | None:intergenic | 40.0% | |
| ATTGCATCTCTTTGACCTCT+TGG | + | 32439:5360-5379 | None:intergenic | 40.0% | |
| CAAATCATCATCCTGAGCAT+TGG | - | 32439:5817-5836 | MS.gene061001:intron | 40.0% | |
| CCACGTGAAACTGAATTTGA+AGG | - | 32439:5552-5571 | MS.gene061001:CDS | 40.0% | |
| CCTTCAAATTCAGTTTCACG+TGG | + | 32439:5555-5574 | None:intergenic | 40.0% | |
| CGTGAAACTGAATTTGAAGG+CGG | - | 32439:5555-5574 | MS.gene061001:CDS | 40.0% | |
| GGAGTGGTGAGTATTTGTTT+GGG | - | 32439:5850-5869 | MS.gene061001:intron | 40.0% | |
| GGTTTGAATGGATATTCAGC+AGG | + | 32439:5606-5625 | None:intergenic | 40.0% | |
| GTCAACAACATAAACGAAGG+AGG | + | 32439:5627-5646 | None:intergenic | 40.0% | |
| TGAAGAACCCAAAAATGAGG+AGG | - | 32439:7105-7124 | MS.gene061001:intron | 40.0% | |
| TGGAGTGGTGAGTATTTGTT+TGG | - | 32439:5849-5868 | MS.gene061001:intron | 40.0% | |
| TTACGACTAACATGCACTGT+GGG | + | 32439:6922-6941 | None:intergenic | 40.0% | |
| TTGAAACTTCAACTCCTGCA+GGG | + | 32439:7249-7268 | None:intergenic | 40.0% | |
| ! | CAGGATTTTGCTGAGTAACT+TGG | + | 32439:7138-7157 | None:intergenic | 40.0% |
| ! | CATGGAGCAGTTTTCATGAA+TGG | - | 32439:7451-7470 | MS.gene061001:CDS | 40.0% |
| ! | CGTGAAGCATCTCCAAAATT+TGG | - | 32439:6841-6860 | MS.gene061001:intron | 40.0% |
| ! | TTGCTTCAGATTTTGAACCC+TGG | + | 32439:7323-7342 | None:intergenic | 40.0% |
| ! | TTTGAAACTTCAACTCCTGC+AGG | + | 32439:7250-7269 | None:intergenic | 40.0% |
| !!! | GCTTGTTTTCGTGTCATTTG+AGG | - | 32439:6389-6408 | MS.gene061001:intron | 40.0% |
| AAAAAGGAACCTCGAGAGGA+AGG | + | 32439:5408-5427 | None:intergenic | 45.0% | |
| AAATACTCACCACTCCACGA+TGG | + | 32439:5846-5865 | None:intergenic | 45.0% | |
| AACCCTGGTATCTGACTTTC+GGG | + | 32439:7308-7327 | None:intergenic | 45.0% | |
| AATGCTAATCCTAACCCTGC+AGG | - | 32439:7232-7251 | MS.gene061001:CDS | 45.0% | |
| AGAGTGAACAATCGGTCATC+AGG | + | 32439:7364-7383 | None:intergenic | 45.0% | |
| AGGAAGGCTCATGAAGTCAT+CGG | + | 32439:5392-5411 | None:intergenic | 45.0% | |
| AGTGAAAAAGGAACCTCGAG+AGG | + | 32439:5412-5431 | None:intergenic | 45.0% | |
| CTGGGATTCCAAAGTGCAAT+TGG | + | 32439:7023-7042 | None:intergenic | 45.0% | |
| GAACCCTGGTATCTGACTTT+CGG | + | 32439:7309-7328 | None:intergenic | 45.0% | |
| TAGCTGCCAGAGTGAACAAT+CGG | + | 32439:7372-7391 | None:intergenic | 45.0% | |
| TGAAGAATCCAGCTGTGAAG+CGG | - | 32439:5329-5348 | MS.gene061001:CDS | 45.0% | |
| TGACTTTCGGGGCAATTGAT+TGG | + | 32439:7296-7315 | None:intergenic | 45.0% | |
| TGATGACCGATTGTTCACTC+TGG | - | 32439:7363-7382 | MS.gene061001:intron | 45.0% | |
| TGCGTCTCAAAACGACCATT+AGG | + | 32439:5774-5793 | None:intergenic | 45.0% | |
| TTCACGGGATTTAATGGCCA+AGG | + | 32439:6827-6846 | None:intergenic | 45.0% | |
| TTGTTCACTCTGGCAGCTAT+TGG | - | 32439:7373-7392 | MS.gene061001:CDS | 45.0% | |
| ! | AAAATTCATGGAGGACTGGC+AGG | + | 32439:6079-6098 | None:intergenic | 45.0% |
| ! | CAATTGATTGGTTGAGACGC+CGG | + | 32439:7284-7303 | None:intergenic | 45.0% |
| ! | CATTGCTCGTTTGCTCGTTT+TGG | - | 32439:5925-5944 | MS.gene061001:intron | 45.0% |
| ! | CGTTCAGGAGTCCCAAATTT+TGG | + | 32439:6856-6875 | None:intergenic | 45.0% |
| !! | GTCTCAGCCTCCTCATTTTT+GGG | + | 32439:7115-7134 | None:intergenic | 45.0% |
| AAAAGAAGACAGGCGTGCCT+TGG | - | 32439:6807-6826 | MS.gene061001:intron | 50.0% | |
| ACCCTGGTATCTGACTTTCG+GGG | + | 32439:7307-7326 | None:intergenic | 50.0% | |
| ACTTCAACTCCTGCAGGGTT+AGG | + | 32439:7244-7263 | None:intergenic | 50.0% | |
| AGGCTCATGAAGTCATCGGA+AGG | + | 32439:5388-5407 | None:intergenic | 50.0% | |
| ATTCGGTCACCTGCTTGATC+TGG | + | 32439:7187-7206 | None:intergenic | 50.0% | |
| GGCTCATGAAGTCATCGGAA+GGG | + | 32439:5387-5406 | None:intergenic | 50.0% | |
| GTTCTTCAGAAGCCTGCAGA+GGG | + | 32439:7093-7112 | None:intergenic | 50.0% | |
| TTCATGCCCACCAACCCAAA+CGG | - | 32439:6760-6779 | MS.gene061001:intron | 50.0% | |
| ! | AGGGCTAGGTTGAGGAACAA+CGG | + | 32439:7074-7093 | None:intergenic | 50.0% |
| ! | GCAGCACCGCTAATCCTTTT+TGG | + | 32439:6042-6061 | None:intergenic | 50.0% |
| ! | GGTCTCAGCCTCCTCATTTT+TGG | + | 32439:7116-7135 | None:intergenic | 50.0% |
| ! | TGTGAAGCGGATTCTCCAAG+AGG | - | 32439:5342-5361 | MS.gene061001:CDS | 50.0% |
| !! | GAGGGTATTCCAGATCAAGC+AGG | - | 32439:7175-7194 | MS.gene061001:CDS | 50.0% |
| ACCAACCCAAACGGTGCCTT+GGG | - | 32439:6769-6788 | MS.gene061001:intron | 55.0% | |
| CACGATGGTTGCCAATGCTC+AGG | + | 32439:5831-5850 | None:intergenic | 55.0% | |
| CATTGGCAACCATCGTGGAG+TGG | - | 32439:5834-5853 | MS.gene061001:intron | 55.0% | |
| CTTCATGAGCCTTCCTCTCG+AGG | - | 32439:5396-5415 | MS.gene061001:CDS | 55.0% | |
| GCCCCGAAAGTCAGATACCA+GGG | - | 32439:7303-7322 | MS.gene061001:intron | 55.0% | |
| GGTTCTTCAGAAGCCTGCAG+AGG | + | 32439:7094-7113 | None:intergenic | 55.0% | |
| TGCCCCGAAAGTCAGATACC+AGG | - | 32439:7302-7321 | MS.gene061001:intron | 55.0% | |
| TGGAGAATCCGCTTCACAGC+TGG | + | 32439:5340-5359 | None:intergenic | 55.0% | |
| ! | TCTGGAATACCCTCTCCTGC+AGG | + | 32439:7169-7188 | None:intergenic | 55.0% |
| ! | TGATTGGTTGAGACGCCGGA+TGG | + | 32439:7280-7299 | None:intergenic | 55.0% |
| !! | AAGGCACCGTTTGGGTTGGT+GGG | + | 32439:6769-6788 | None:intergenic | 55.0% |
| !! | AATGAGCCCAAGGCACCGTT+TGG | + | 32439:6778-6797 | None:intergenic | 55.0% |
| !! | ATGAGCCCAAGGCACCGTTT+GGG | + | 32439:6777-6796 | None:intergenic | 55.0% |
| !! | CGTGTCATTTGAGGGGCGTT+TGG | - | 32439:6398-6417 | MS.gene061001:intron | 55.0% |
| !! | CTGAGCATTGGCAACCATCG+TGG | - | 32439:5829-5848 | MS.gene061001:intron | 55.0% |
| AATCCTGAGGCTCCACCTGC+AGG | - | 32439:7151-7170 | MS.gene061001:CDS | 60.0% | |
| CACCAACCCAAACGGTGCCT+TGG | - | 32439:6768-6787 | MS.gene061001:intron | 60.0% | |
| GGAATACCCTCTCCTGCAGG+TGG | + | 32439:7166-7185 | None:intergenic | 60.0% | |
| TCAGAAGCCTGCAGAGGGCT+AGG | + | 32439:7088-7107 | None:intergenic | 60.0% | |
| TCCTCAACCTAGCCCTCTGC+AGG | - | 32439:7078-7097 | MS.gene061001:intron | 60.0% | |
| !! | CAAGGCACCGTTTGGGTTGG+TGG | + | 32439:6770-6789 | None:intergenic | 60.0% |
| GAGGCTCCACCTGCAGGAGA+GGG | - | 32439:7157-7176 | MS.gene061001:CDS | 65.0% | |
| GCCTGCAGAGGGCTAGGTTG+AGG | + | 32439:7082-7101 | None:intergenic | 65.0% | |
| TCTCCTGCAGGTGGAGCCTC+AGG | + | 32439:7157-7176 | None:intergenic | 65.0% | |
| TGAGGCTCCACCTGCAGGAG+AGG | - | 32439:7156-7175 | MS.gene061001:CDS | 65.0% | |
| !! | GCCCAAGGCACCGTTTGGGT+TGG | + | 32439:6773-6792 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 32439 | gene | 5310 | 7480 | 5310 | ID=MS.gene061001 |
| 32439 | mRNA | 5310 | 7480 | 5310 | ID=MS.gene061001.t1;Parent=MS.gene061001 |
| 32439 | exon | 7373 | 7480 | 7373 | ID=MS.gene061001.t1.exon1;Parent=MS.gene061001.t1 |
| 32439 | CDS | 7373 | 7480 | 7373 | ID=cds.MS.gene061001.t1;Parent=MS.gene061001.t1 |
| 32439 | exon | 7143 | 7274 | 7143 | ID=MS.gene061001.t1.exon2;Parent=MS.gene061001.t1 |
| 32439 | CDS | 7143 | 7274 | 7143 | ID=cds.MS.gene061001.t1;Parent=MS.gene061001.t1 |
| 32439 | exon | 5310 | 5747 | 5310 | ID=MS.gene061001.t1.exon3;Parent=MS.gene061001.t1 |
| 32439 | CDS | 5310 | 5747 | 5310 | ID=cds.MS.gene061001.t1;Parent=MS.gene061001.t1 |
| Gene Sequence |
| Protein sequence |
