Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060997.t1 | XP_003609763.1 | 71.1 | 308 | 5 | 2 | 1 | 225 | 1 | 307 | 1.20E-98 | 369.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060997.t1 | Q9LSP7 | 42.2 | 308 | 91 | 4 | 1 | 223 | 1 | 306 | 5.9e-46 | 185.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060997.t1 | G7JMU6 | 71.1 | 308 | 5 | 2 | 1 | 225 | 1 | 307 | 8.6e-99 | 369.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060995 | MS.gene060997 | 0.865241 | 6.81E-65 | -1.69E-46 |
| MS.gene060997 | MS.gene061001 | 0.988989 | 3.13E-176 | -1.69E-46 |
| MS.gene060997 | MS.gene065136 | 0.801319 | 9.52E-49 | -1.69E-46 |
| MS.gene060997 | MS.gene76305 | 0.803804 | 2.93E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060997.t1 | MTR_4g121960 | 95.862 | 145 | 5 | 1 | 81 | 225 | 164 | 307 | 2.13e-91 | 271 |
| MS.gene060997.t1 | MTR_4g121960 | 100.000 | 80 | 0 | 0 | 1 | 80 | 1 | 80 | 1.53e-53 | 174 |
| MS.gene060997.t1 | MTR_5g075580 | 40.000 | 70 | 42 | 0 | 11 | 80 | 2 | 71 | 5.39e-14 | 67.4 |
| MS.gene060997.t1 | MTR_3g062450 | 40.000 | 70 | 42 | 0 | 11 | 80 | 2 | 71 | 5.68e-14 | 67.4 |
| MS.gene060997.t1 | MTR_7g116940 | 40.000 | 70 | 42 | 0 | 11 | 80 | 2 | 71 | 9.23e-14 | 66.6 |
| MS.gene060997.t1 | MTR_7g116940 | 42.188 | 64 | 37 | 0 | 11 | 74 | 2 | 65 | 1.16e-13 | 65.9 |
| MS.gene060997.t1 | MTR_7g116940 | 40.000 | 70 | 42 | 0 | 11 | 80 | 2 | 71 | 1.57e-13 | 66.2 |
| MS.gene060997.t1 | MTR_4g073240 | 38.571 | 70 | 43 | 0 | 11 | 80 | 2 | 71 | 3.67e-13 | 65.1 |
| MS.gene060997.t1 | MTR_8g071040 | 35.714 | 84 | 52 | 1 | 11 | 92 | 2 | 85 | 3.75e-13 | 65.1 |
| MS.gene060997.t1 | MTR_1g021150 | 35.714 | 84 | 52 | 1 | 11 | 92 | 2 | 85 | 4.03e-13 | 65.1 |
| MS.gene060997.t1 | MTR_8g023380 | 34.286 | 70 | 46 | 0 | 11 | 80 | 6 | 75 | 1.15e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060997.t1 | AT3G17000 | 91.358 | 81 | 6 | 1 | 1 | 80 | 1 | 81 | 2.90e-48 | 160 |
| MS.gene060997.t1 | AT3G17000 | 41.333 | 150 | 73 | 5 | 81 | 223 | 165 | 306 | 5.01e-18 | 81.3 |
| MS.gene060997.t1 | AT3G08690 | 38.095 | 84 | 50 | 1 | 11 | 92 | 2 | 85 | 1.47e-14 | 68.9 |
| MS.gene060997.t1 | AT3G08690 | 38.095 | 84 | 50 | 1 | 11 | 92 | 2 | 85 | 1.47e-14 | 68.9 |
| MS.gene060997.t1 | AT5G53300 | 41.429 | 70 | 41 | 0 | 11 | 80 | 2 | 71 | 2.14e-14 | 68.6 |
| MS.gene060997.t1 | AT5G53300 | 41.429 | 70 | 41 | 0 | 11 | 80 | 2 | 71 | 2.14e-14 | 68.6 |
| MS.gene060997.t1 | AT5G53300 | 41.429 | 70 | 41 | 0 | 11 | 80 | 2 | 71 | 2.14e-14 | 68.6 |
| MS.gene060997.t1 | AT5G41700 | 41.429 | 70 | 41 | 0 | 11 | 80 | 2 | 71 | 2.23e-14 | 68.6 |
| MS.gene060997.t1 | AT5G41700 | 41.429 | 70 | 41 | 0 | 11 | 80 | 2 | 71 | 2.23e-14 | 68.6 |
| MS.gene060997.t1 | AT5G41700 | 41.429 | 70 | 41 | 0 | 11 | 80 | 2 | 71 | 2.23e-14 | 68.6 |
| MS.gene060997.t1 | AT5G53300 | 43.750 | 64 | 36 | 0 | 11 | 74 | 2 | 65 | 2.61e-14 | 67.0 |
| MS.gene060997.t1 | AT5G41700 | 43.750 | 64 | 36 | 0 | 11 | 74 | 2 | 65 | 3.22e-14 | 67.8 |
| MS.gene060997.t1 | AT1G64230 | 40.000 | 70 | 42 | 0 | 11 | 80 | 2 | 71 | 3.66e-14 | 67.8 |
| MS.gene060997.t1 | AT1G64230 | 40.000 | 70 | 42 | 0 | 11 | 80 | 2 | 71 | 3.66e-14 | 67.8 |
| MS.gene060997.t1 | AT4G27960 | 40.000 | 70 | 42 | 0 | 11 | 80 | 2 | 71 | 3.89e-14 | 67.8 |
| MS.gene060997.t1 | AT2G16740 | 41.429 | 70 | 41 | 0 | 11 | 80 | 2 | 71 | 4.89e-14 | 67.4 |
| MS.gene060997.t1 | AT5G41700 | 40.845 | 71 | 41 | 1 | 11 | 80 | 2 | 72 | 2.52e-13 | 65.5 |
| MS.gene060997.t1 | AT4G27960 | 42.188 | 64 | 37 | 0 | 11 | 74 | 32 | 95 | 2.73e-13 | 66.2 |
| MS.gene060997.t1 | AT3G08700 | 36.471 | 85 | 51 | 2 | 11 | 92 | 2 | 86 | 1.41e-12 | 63.5 |
| MS.gene060997.t1 | AT3G08700 | 36.471 | 85 | 51 | 2 | 11 | 92 | 2 | 86 | 1.41e-12 | 63.5 |
| MS.gene060997.t1 | AT1G64230 | 35.443 | 79 | 42 | 1 | 11 | 80 | 2 | 80 | 1.77e-12 | 63.5 |
| MS.gene060997.t1 | AT1G17280 | 34.286 | 70 | 46 | 0 | 11 | 80 | 6 | 75 | 8.74e-12 | 63.2 |
| MS.gene060997.t1 | AT1G17280 | 34.286 | 70 | 46 | 0 | 11 | 80 | 6 | 75 | 8.74e-12 | 63.2 |
| MS.gene060997.t1 | AT1G17280 | 34.286 | 70 | 46 | 0 | 11 | 80 | 6 | 75 | 8.74e-12 | 63.2 |
| MS.gene060997.t1 | AT1G17280 | 34.286 | 70 | 46 | 0 | 11 | 80 | 6 | 75 | 8.74e-12 | 63.2 |
| MS.gene060997.t1 | AT1G17280 | 34.286 | 70 | 46 | 0 | 11 | 80 | 6 | 75 | 8.74e-12 | 63.2 |
| MS.gene060997.t1 | AT1G17280 | 34.286 | 70 | 46 | 0 | 11 | 80 | 6 | 75 | 8.74e-12 | 63.2 |
| MS.gene060997.t1 | AT1G17280 | 34.286 | 70 | 46 | 0 | 11 | 80 | 6 | 75 | 8.74e-12 | 63.2 |
| MS.gene060997.t1 | AT1G17280 | 34.286 | 70 | 46 | 0 | 11 | 80 | 6 | 75 | 8.74e-12 | 63.2 |
| MS.gene060997.t1 | AT1G17280 | 34.286 | 70 | 46 | 0 | 11 | 80 | 6 | 75 | 9.71e-12 | 63.2 |
| MS.gene060997.t1 | AT5G56150 | 37.143 | 70 | 44 | 0 | 11 | 80 | 2 | 71 | 9.84e-12 | 61.2 |
| MS.gene060997.t1 | AT5G50430 | 34.286 | 70 | 46 | 0 | 11 | 80 | 6 | 75 | 1.08e-11 | 62.8 |
| MS.gene060997.t1 | AT5G50430 | 34.286 | 70 | 46 | 0 | 11 | 80 | 6 | 75 | 1.08e-11 | 62.8 |
| MS.gene060997.t1 | AT5G56150 | 37.143 | 70 | 44 | 0 | 11 | 80 | 2 | 71 | 1.27e-11 | 60.1 |
| MS.gene060997.t1 | AT3G13550 | 39.706 | 68 | 41 | 0 | 13 | 80 | 39 | 106 | 8.22e-11 | 59.3 |
Find 0 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTATATAATTTACTTTT+TGG | - | 32438:7148-7167 | MS.gene060997:intron | 10.0% |
| !!! | TTTTTTTTCAAATTCAATTA+AGG | - | 32438:7260-7279 | MS.gene060997:intron | 10.0% |
| !! | ATATCAATCCTATTATATAA+AGG | + | 32438:7405-7424 | None:intergenic | 15.0% |
| !! | ATATTATAAAAAATGCTTCA+GGG | + | 32438:8158-8177 | None:intergenic | 15.0% |
| !! | GAAGAAATTTATTAAATCTA+CGG | - | 32438:8590-8609 | MS.gene060997:CDS | 15.0% |
| !! | TATCAATCCTATTATATAAA+GGG | + | 32438:7404-7423 | None:intergenic | 15.0% |
| !! | TGAATTTGAAAAAAAATTCA+TGG | + | 32438:7256-7275 | None:intergenic | 15.0% |
| !! | AAAAAAAGTAACACTTAACA+TGG | + | 32438:8128-8147 | None:intergenic | 20.0% |
| !! | AAATTGAAAAACCCTAAAAT+TGG | + | 32438:6612-6631 | None:intergenic | 20.0% |
| !! | ATAAAAAACAACAAGATTCA+TGG | + | 32438:7345-7364 | None:intergenic | 20.0% |
| !! | ATTTGAAAAAAAATTCATGG+AGG | + | 32438:7253-7272 | None:intergenic | 20.0% |
| !! | GATATTATAAAAAATGCTTC+AGG | + | 32438:8159-8178 | None:intergenic | 20.0% |
| !! | GTAATTTCCCTTTATATAAT+AGG | - | 32438:7394-7413 | MS.gene060997:intron | 20.0% |
| !! | TGATTAATATTGTGTTTGAT+TGG | - | 32438:6652-6671 | MS.gene060997:CDS | 20.0% |
| !! | TGTGATAAATACTATTAAGA+GGG | + | 32438:7798-7817 | None:intergenic | 20.0% |
| !! | TTCAGGAAAATATATTTGAA+TGG | - | 32438:6676-6695 | MS.gene060997:CDS | 20.0% |
| !! | TTGTGATAAATACTATTAAG+AGG | + | 32438:7799-7818 | None:intergenic | 20.0% |
| ! | AACAAAGTATGAATCTTCAA+TGG | + | 32438:7822-7841 | None:intergenic | 25.0% |
| ! | AGTATATAGTCTATGTCAAA+TGG | - | 32438:7522-7541 | MS.gene060997:intron | 25.0% |
| ! | GTATATAGTCTATGTCAAAT+GGG | - | 32438:7523-7542 | MS.gene060997:intron | 25.0% |
| ! | GTGATAAATACTATTAAGAG+GGG | + | 32438:7797-7816 | None:intergenic | 25.0% |
| ! | TAGATTACAAAAAAGAAGAC+AGG | - | 32438:7962-7981 | MS.gene060997:intron | 25.0% |
| ! | TTTATTAAATCTACGGAACA+TGG | - | 32438:8597-8616 | MS.gene060997:CDS | 25.0% |
| !!! | TGTATATGTTGTTTCTACAA+TGG | - | 32438:7625-7644 | MS.gene060997:intron | 25.0% |
| AAAAAAAATTCATGGAGGAC+TGG | + | 32438:7248-7267 | None:intergenic | 30.0% | |
| AAAAACCCTAAAATTGGCAA+AGG | + | 32438:6606-6625 | None:intergenic | 30.0% | |
| AAAACCCTAAAATTGGCAAA+GGG | + | 32438:6605-6624 | None:intergenic | 30.0% | |
| AACATGGTTTAATCAACATG+AGG | + | 32438:8112-8131 | None:intergenic | 30.0% | |
| AGATTCATGGAAATCTAGAT+AGG | + | 32438:7332-7351 | None:intergenic | 30.0% | |
| CAAAGGGTAAAAAGTGAAAA+AGG | + | 32438:6589-6608 | None:intergenic | 30.0% | |
| TAGCATATACTCATGTATCT+GGG | + | 32438:8205-8224 | None:intergenic | 30.0% | |
| TATGTTGTGTTTAAGTGGAT+TGG | - | 32438:7172-7191 | MS.gene060997:intron | 30.0% | |
| TGAATGGCAATTTGCAATTA+GGG | - | 32438:6692-6711 | MS.gene060997:CDS | 30.0% | |
| TTAGCATATACTCATGTATC+TGG | + | 32438:8206-8225 | None:intergenic | 30.0% | |
| TTGAATGGCAATTTGCAATT+AGG | - | 32438:6691-6710 | MS.gene060997:CDS | 30.0% | |
| TTGGATATGTTGTGTTTAAG+TGG | - | 32438:7167-7186 | MS.gene060997:intron | 30.0% | |
| ! | TTGTTATGTTTTCAGCCTAA+TGG | - | 32438:6921-6940 | MS.gene060997:intron | 30.0% |
| ! | TTTACCCTTTGCCAATTTTA+GGG | - | 32438:6598-6617 | MS.gene060997:CDS | 30.0% |
| ! | TTTTACCCTTTGCCAATTTT+AGG | - | 32438:6597-6616 | MS.gene060997:CDS | 30.0% |
| !! | ATACTCTCACTTTTAATGAC+AGG | + | 32438:7476-7495 | None:intergenic | 30.0% |
| !! | CATTAGTCGACTTTTATGTA+GGG | - | 32438:7442-7461 | MS.gene060997:intron | 30.0% |
| !! | TATTGTGTTTGATTGGTTTC+AGG | - | 32438:6659-6678 | MS.gene060997:CDS | 30.0% |
| !! | TCATTAGTCGACTTTTATGT+AGG | - | 32438:7441-7460 | MS.gene060997:intron | 30.0% |
| !!! | ATTGGTTTTGCAATCCAAAA+AGG | - | 32438:7190-7209 | MS.gene060997:intron | 30.0% |
| AATTGCAGATTCGTGTAAGA+TGG | - | 32438:7122-7141 | MS.gene060997:intron | 35.0% | |
| ACAGTCAACAACATAAACGA+AGG | + | 32438:6795-6814 | None:intergenic | 35.0% | |
| ACATGAGTATATGCTAAGCA+AGG | - | 32438:8209-8228 | MS.gene060997:intron | 35.0% | |
| ATAAACGAAGGAGGTTTGAA+TGG | + | 32438:6783-6802 | None:intergenic | 35.0% | |
| ATCTTGTACCAATTGCACTT+TGG | - | 32438:8176-8195 | MS.gene060997:intron | 35.0% | |
| CGTCAAAAAACTGATTGATG+AGG | - | 32438:8039-8058 | MS.gene060997:intron | 35.0% | |
| CTTCTTGCTCTTCAACTATT+CGG | + | 32438:8368-8387 | None:intergenic | 35.0% | |
| GAATGGCAATTTGCAATTAG+GGG | - | 32438:6693-6712 | MS.gene060997:CDS | 35.0% | |
| GTTTCAAATGAGATTCCATC+CGG | - | 32438:8426-8445 | MS.gene060997:intron | 35.0% | |
| TAGTCTATGTCAAATGGGAA+TGG | - | 32438:7528-7547 | MS.gene060997:intron | 35.0% | |
| TCTAGATAGGTCACTTCAAT+AGG | + | 32438:7319-7338 | None:intergenic | 35.0% | |
| TGCAATCCAAAAAGGATTAG+CGG | - | 32438:7198-7217 | MS.gene060997:intron | 35.0% | |
| TTTGAAGGCGGAATTTATCA+TGG | - | 32438:6732-6751 | MS.gene060997:CDS | 35.0% | |
| TTTGTAATCTAATGAGCCCA+AGG | + | 32438:7953-7972 | None:intergenic | 35.0% | |
| TTTGTTTGGGAGTAGTACAT+TGG | - | 32438:7028-7047 | MS.gene060997:intron | 35.0% | |
| ! | AAAATCTGAAGCAAGAGACA+AGG | - | 32438:8493-8512 | MS.gene060997:intron | 35.0% |
| ! | AAATCTGAAGCAAGAGACAA+GGG | - | 32438:8494-8513 | MS.gene060997:intron | 35.0% |
| ! | AGGATTTTGCTGAGTAACTT+GGG | + | 32438:8301-8320 | None:intergenic | 35.0% |
| ! | GTGAAGCATCTCCAAAATTT+GGG | - | 32438:8007-8026 | MS.gene060997:intron | 35.0% |
| ! | TTCTGAAGAACCCAAAAATG+AGG | - | 32438:8266-8285 | MS.gene060997:intron | 35.0% |
| !! | AAATTTTGGAGATGCTTCAC+GGG | + | 32438:8007-8026 | None:intergenic | 35.0% |
| !! | AAGTGAGAGTATGTTTTGCT+AGG | - | 32438:7484-7503 | MS.gene060997:intron | 35.0% |
| !! | CAAATTTTGGAGATGCTTCA+CGG | + | 32438:8008-8027 | None:intergenic | 35.0% |
| !! | TGGACTTGCTATAGCTATTA+TGG | - | 32438:8557-8576 | MS.gene060997:CDS | 35.0% |
| !!! | CAATCAGTTTTTTGACGTTC+AGG | + | 32438:8036-8055 | None:intergenic | 35.0% |
| !!! | CTTGTTTTCGTGTCATTTGA+GGG | - | 32438:7555-7574 | MS.gene060997:intron | 35.0% |
| !!! | TTGTTTTCGTGTCATTTGAG+GGG | - | 32438:7556-7575 | MS.gene060997:intron | 35.0% |
| AAGGCGGAATTTATCATGGA+AGG | - | 32438:6736-6755 | MS.gene060997:CDS | 40.0% | |
| AGATGCTTCACGGGATTTAA+TGG | + | 32438:7998-8017 | None:intergenic | 40.0% | |
| AGTTACTCAGCAAAATCCTG+AGG | - | 32438:8302-8321 | MS.gene060997:intron | 40.0% | |
| ATTACGACTAACATGCACTG+TGG | + | 32438:8088-8107 | None:intergenic | 40.0% | |
| ATTGCATCTCTTTGACCTCT+TGG | + | 32438:6525-6544 | None:intergenic | 40.0% | |
| CAAATCATCATCCTGAGCAT+TGG | - | 32438:6982-7001 | MS.gene060997:intron | 40.0% | |
| CCACGTGAAACTGAATTTGA+AGG | - | 32438:6717-6736 | MS.gene060997:CDS | 40.0% | |
| CCTTCAAATTCAGTTTCACG+TGG | + | 32438:6720-6739 | None:intergenic | 40.0% | |
| CGTGAAACTGAATTTGAAGG+CGG | - | 32438:6720-6739 | MS.gene060997:CDS | 40.0% | |
| GGAGTGGTGAGTATTTGTTT+GGG | - | 32438:7015-7034 | MS.gene060997:intron | 40.0% | |
| GGTTTGAATGGATATTCAGC+AGG | + | 32438:6771-6790 | None:intergenic | 40.0% | |
| GTCAACAACATAAACGAAGG+AGG | + | 32438:6792-6811 | None:intergenic | 40.0% | |
| TGAAGAACCCAAAAATGAGG+AGG | - | 32438:8269-8288 | MS.gene060997:intron | 40.0% | |
| TGGAGTGGTGAGTATTTGTT+TGG | - | 32438:7014-7033 | MS.gene060997:intron | 40.0% | |
| TTACGACTAACATGCACTGT+GGG | + | 32438:8087-8106 | None:intergenic | 40.0% | |
| TTGAAACTTCAACTCCTGCA+GGG | + | 32438:8413-8432 | None:intergenic | 40.0% | |
| ! | CAGGATTTTGCTGAGTAACT+TGG | + | 32438:8302-8321 | None:intergenic | 40.0% |
| ! | CATGGAGCAGTTTTCATGAA+TGG | - | 32438:8615-8634 | MS.gene060997:CDS | 40.0% |
| ! | CGTGAAGCATCTCCAAAATT+TGG | - | 32438:8006-8025 | MS.gene060997:intron | 40.0% |
| ! | TTGCTTCAGATTTTGAACCC+TGG | + | 32438:8487-8506 | None:intergenic | 40.0% |
| ! | TTTGAAACTTCAACTCCTGC+AGG | + | 32438:8414-8433 | None:intergenic | 40.0% |
| !!! | GCTTGTTTTCGTGTCATTTG+AGG | - | 32438:7554-7573 | MS.gene060997:intron | 40.0% |
| AAAAAGGAACCTCGAGAGGA+AGG | + | 32438:6573-6592 | None:intergenic | 45.0% | |
| AAATACTCACCACTCCACGA+TGG | + | 32438:7011-7030 | None:intergenic | 45.0% | |
| AACCCTGGTATCTGACTTTC+GGG | + | 32438:8472-8491 | None:intergenic | 45.0% | |
| AATGCTAATCCTAACCCTGC+AGG | - | 32438:8396-8415 | MS.gene060997:CDS | 45.0% | |
| AGAGTGAACAATCGGTCATC+AGG | + | 32438:8528-8547 | None:intergenic | 45.0% | |
| AGGAAGGCTCATGAAGTCAT+CGG | + | 32438:6557-6576 | None:intergenic | 45.0% | |
| AGTGAAAAAGGAACCTCGAG+AGG | + | 32438:6577-6596 | None:intergenic | 45.0% | |
| CTGGGATTCCAAAGTGCAAT+TGG | + | 32438:8187-8206 | None:intergenic | 45.0% | |
| GAACCCTGGTATCTGACTTT+CGG | + | 32438:8473-8492 | None:intergenic | 45.0% | |
| TAGCTGCCAGAGTGAACAAT+CGG | + | 32438:8536-8555 | None:intergenic | 45.0% | |
| TGAAGAATCCAGCTGTGAAG+CGG | - | 32438:6494-6513 | MS.gene060997:CDS | 45.0% | |
| TGACTTTCGGGGCAATTGAT+TGG | + | 32438:8460-8479 | None:intergenic | 45.0% | |
| TGATGACCGATTGTTCACTC+TGG | - | 32438:8527-8546 | MS.gene060997:intron | 45.0% | |
| TGCGTCTCAAAACGACCATT+AGG | + | 32438:6939-6958 | None:intergenic | 45.0% | |
| TTCACGGGATTTAATGGCCA+AGG | + | 32438:7992-8011 | None:intergenic | 45.0% | |
| TTGTTCACTCTGGCAGCTAT+TGG | - | 32438:8537-8556 | MS.gene060997:CDS | 45.0% | |
| ! | AAAATTCATGGAGGACTGGC+AGG | + | 32438:7244-7263 | None:intergenic | 45.0% |
| ! | CAATTGATTGGTTGAGACGC+CGG | + | 32438:8448-8467 | None:intergenic | 45.0% |
| ! | CATTGCTCGTTTGCTCGTTT+TGG | - | 32438:7090-7109 | MS.gene060997:intron | 45.0% |
| ! | CGTTCAGGAGTCCCAAATTT+TGG | + | 32438:8021-8040 | None:intergenic | 45.0% |
| !! | GTCTCAGCCTCCTCATTTTT+GGG | + | 32438:8279-8298 | None:intergenic | 45.0% |
| AAAAGAAGACAGGCGTGCCT+TGG | - | 32438:7972-7991 | MS.gene060997:intron | 50.0% | |
| ACCCTGGTATCTGACTTTCG+GGG | + | 32438:8471-8490 | None:intergenic | 50.0% | |
| ACTTCAACTCCTGCAGGGTT+AGG | + | 32438:8408-8427 | None:intergenic | 50.0% | |
| AGGCTCATGAAGTCATCGGA+AGG | + | 32438:6553-6572 | None:intergenic | 50.0% | |
| ATTCGGTCACCTGCTTGATC+TGG | + | 32438:8351-8370 | None:intergenic | 50.0% | |
| GGCTCATGAAGTCATCGGAA+GGG | + | 32438:6552-6571 | None:intergenic | 50.0% | |
| GTTCTTCAGAAGCCTGCAGA+GGG | + | 32438:8257-8276 | None:intergenic | 50.0% | |
| TTCATGCCCACCAACCCAAA+CGG | - | 32438:7925-7944 | MS.gene060997:intron | 50.0% | |
| ! | AGGGCTAGGTTGAGGAACAA+CGG | + | 32438:8238-8257 | None:intergenic | 50.0% |
| ! | GCAGCACCGCTAATCCTTTT+TGG | + | 32438:7207-7226 | None:intergenic | 50.0% |
| ! | GGTCTCAGCCTCCTCATTTT+TGG | + | 32438:8280-8299 | None:intergenic | 50.0% |
| ! | TGTGAAGCGGATTCTCCAAG+AGG | - | 32438:6507-6526 | MS.gene060997:CDS | 50.0% |
| !! | GAGGGTATTCCAGATCAAGC+AGG | - | 32438:8339-8358 | MS.gene060997:CDS | 50.0% |
| ACCAACCCAAACGGTGCCTT+GGG | - | 32438:7934-7953 | MS.gene060997:intron | 55.0% | |
| CACGATGGTTGCCAATGCTC+AGG | + | 32438:6996-7015 | None:intergenic | 55.0% | |
| CATTGGCAACCATCGTGGAG+TGG | - | 32438:6999-7018 | MS.gene060997:intron | 55.0% | |
| CTTCATGAGCCTTCCTCTCG+AGG | - | 32438:6561-6580 | MS.gene060997:CDS | 55.0% | |
| GCCCCGAAAGTCAGATACCA+GGG | - | 32438:8467-8486 | MS.gene060997:intron | 55.0% | |
| GGTTCTTCAGAAGCCTGCAG+AGG | + | 32438:8258-8277 | None:intergenic | 55.0% | |
| TGCCCCGAAAGTCAGATACC+AGG | - | 32438:8466-8485 | MS.gene060997:intron | 55.0% | |
| TGGAGAATCCGCTTCACAGC+TGG | + | 32438:6505-6524 | None:intergenic | 55.0% | |
| ! | TCTGGAATACCCTCTCCTGC+AGG | + | 32438:8333-8352 | None:intergenic | 55.0% |
| ! | TGATTGGTTGAGACGCCGGA+TGG | + | 32438:8444-8463 | None:intergenic | 55.0% |
| !! | AAGGCACCGTTTGGGTTGGT+GGG | + | 32438:7934-7953 | None:intergenic | 55.0% |
| !! | AATGAGCCCAAGGCACCGTT+TGG | + | 32438:7943-7962 | None:intergenic | 55.0% |
| !! | ATGAGCCCAAGGCACCGTTT+GGG | + | 32438:7942-7961 | None:intergenic | 55.0% |
| !! | CGTGTCATTTGAGGGGCGTT+TGG | - | 32438:7563-7582 | MS.gene060997:intron | 55.0% |
| !! | CTGAGCATTGGCAACCATCG+TGG | - | 32438:6994-7013 | MS.gene060997:intron | 55.0% |
| AATCCTGAGGCTCCACCTGC+AGG | - | 32438:8315-8334 | MS.gene060997:CDS | 60.0% | |
| CACCAACCCAAACGGTGCCT+TGG | - | 32438:7933-7952 | MS.gene060997:intron | 60.0% | |
| GGAATACCCTCTCCTGCAGG+TGG | + | 32438:8330-8349 | None:intergenic | 60.0% | |
| TCAGAAGCCTGCAGAGGGCT+AGG | + | 32438:8252-8271 | None:intergenic | 60.0% | |
| TCCTCAACCTAGCCCTCTGC+AGG | - | 32438:8242-8261 | MS.gene060997:intron | 60.0% | |
| !! | CAAGGCACCGTTTGGGTTGG+TGG | + | 32438:7935-7954 | None:intergenic | 60.0% |
| GAGGCTCCACCTGCAGGAGA+GGG | - | 32438:8321-8340 | MS.gene060997:CDS | 65.0% | |
| GCCTGCAGAGGGCTAGGTTG+AGG | + | 32438:8246-8265 | None:intergenic | 65.0% | |
| TCTCCTGCAGGTGGAGCCTC+AGG | + | 32438:8321-8340 | None:intergenic | 65.0% | |
| TGAGGCTCCACCTGCAGGAG+AGG | - | 32438:8320-8339 | MS.gene060997:CDS | 65.0% | |
| !! | GCCCAAGGCACCGTTTGGGT+TGG | + | 32438:7938-7957 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 32438 | gene | 6475 | 8644 | 6475 | ID=MS.gene060997 |
| 32438 | mRNA | 6475 | 8644 | 6475 | ID=MS.gene060997.t1;Parent=MS.gene060997 |
| 32438 | exon | 8537 | 8644 | 8537 | ID=MS.gene060997.t1.exon1;Parent=MS.gene060997.t1 |
| 32438 | CDS | 8537 | 8644 | 8537 | ID=cds.MS.gene060997.t1;Parent=MS.gene060997.t1 |
| 32438 | exon | 8307 | 8438 | 8307 | ID=MS.gene060997.t1.exon2;Parent=MS.gene060997.t1 |
| 32438 | CDS | 8307 | 8438 | 8307 | ID=cds.MS.gene060997.t1;Parent=MS.gene060997.t1 |
| 32438 | exon | 6475 | 6912 | 6475 | ID=MS.gene060997.t1.exon3;Parent=MS.gene060997.t1 |
| 32438 | CDS | 6475 | 6912 | 6475 | ID=cds.MS.gene060997.t1;Parent=MS.gene060997.t1 |
| Gene Sequence |
| Protein sequence |
