Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061677.t1 | XP_013466718.1 | 95.1 | 450 | 5 | 1 | 1 | 450 | 1 | 433 | 5.40E-244 | 853.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061677.t1 | Q8L3W1 | 49.4 | 411 | 134 | 8 | 3 | 412 | 2 | 339 | 6.6e-97 | 355.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061677.t1 | A0A072VFE7 | 95.1 | 450 | 5 | 1 | 1 | 450 | 1 | 433 | 3.9e-244 | 853.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene061677.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050163 | MS.gene061677 | -0.810042 | 1.40E-50 | -1.69E-46 |
| MS.gene050165 | MS.gene061677 | -0.825643 | 4.19E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061677.t1 | MTR_1g034240 | 95.111 | 450 | 5 | 1 | 1 | 450 | 1 | 433 | 0.0 | 885 |
| MS.gene061677.t1 | MTR_4g068320 | 60.927 | 453 | 147 | 7 | 3 | 450 | 2 | 429 | 0.0 | 545 |
| MS.gene061677.t1 | MTR_1g034210 | 55.830 | 446 | 94 | 9 | 1 | 420 | 1 | 369 | 1.45e-153 | 440 |
| MS.gene061677.t1 | MTR_1g034210 | 53.117 | 401 | 85 | 9 | 1 | 375 | 1 | 324 | 2.17e-126 | 369 |
| MS.gene061677.t1 | MTR_5g070440 | 49.495 | 99 | 50 | 0 | 7 | 105 | 21 | 119 | 8.69e-30 | 117 |
| MS.gene061677.t1 | MTR_3g005480 | 44.828 | 116 | 63 | 1 | 7 | 122 | 21 | 135 | 4.98e-29 | 115 |
| MS.gene061677.t1 | MTR_3g005480 | 32.895 | 152 | 70 | 5 | 267 | 410 | 134 | 261 | 1.50e-12 | 68.2 |
| MS.gene061677.t1 | MTR_3g005490 | 46.789 | 109 | 53 | 1 | 2 | 105 | 11 | 119 | 9.57e-29 | 114 |
| MS.gene061677.t1 | MTR_3g005420 | 45.455 | 99 | 54 | 0 | 7 | 105 | 289 | 387 | 4.90e-24 | 105 |
| MS.gene061677.t1 | MTR_3g005420 | 38.793 | 116 | 65 | 2 | 7 | 116 | 40 | 155 | 6.14e-21 | 95.9 |
| MS.gene061677.t1 | MTR_3g005420 | 30.822 | 146 | 73 | 4 | 268 | 409 | 415 | 536 | 1.27e-12 | 70.1 |
| MS.gene061677.t1 | MTR_3g005495 | 44.444 | 99 | 55 | 0 | 7 | 105 | 243 | 341 | 1.09e-23 | 103 |
| MS.gene061677.t1 | MTR_3g005495 | 44.681 | 94 | 51 | 1 | 22 | 115 | 28 | 120 | 2.16e-19 | 90.9 |
| MS.gene061677.t1 | MTR_3g005460 | 44.037 | 109 | 60 | 1 | 7 | 115 | 25 | 132 | 1.30e-23 | 103 |
| MS.gene061677.t1 | MTR_3g005460 | 46.000 | 100 | 53 | 1 | 7 | 105 | 262 | 361 | 1.80e-23 | 103 |
| MS.gene061677.t1 | MTR_7g050580 | 41.525 | 118 | 65 | 2 | 4 | 120 | 9 | 123 | 3.32e-22 | 97.1 |
| MS.gene061677.t1 | MTR_3g005440 | 44.444 | 99 | 55 | 0 | 7 | 105 | 242 | 340 | 5.30e-22 | 98.2 |
| MS.gene061677.t1 | MTR_3g005440 | 44.706 | 85 | 47 | 0 | 21 | 105 | 34 | 118 | 1.14e-19 | 91.3 |
| MS.gene061677.t1 | MTR_3g061290 | 36.170 | 141 | 80 | 2 | 7 | 147 | 12 | 142 | 5.54e-22 | 94.0 |
| MS.gene061677.t1 | MTR_7g050710 | 44.444 | 99 | 55 | 0 | 7 | 105 | 13 | 111 | 9.75e-22 | 95.9 |
| MS.gene061677.t1 | MTR_7g050560 | 42.424 | 99 | 57 | 0 | 7 | 105 | 13 | 111 | 1.12e-21 | 95.5 |
| MS.gene061677.t1 | MTR_3g061320 | 42.424 | 99 | 55 | 1 | 7 | 105 | 12 | 108 | 3.27e-21 | 93.6 |
| MS.gene061677.t1 | MTR_7g050720 | 42.857 | 105 | 60 | 0 | 3 | 107 | 6 | 110 | 4.00e-21 | 94.0 |
| MS.gene061677.t1 | MTR_3g005420 | 38.793 | 116 | 65 | 2 | 7 | 116 | 21 | 136 | 4.36e-21 | 95.9 |
| MS.gene061677.t1 | MTR_3g005420 | 43.662 | 71 | 40 | 0 | 7 | 77 | 270 | 340 | 1.30e-15 | 79.3 |
| MS.gene061677.t1 | MTR_3g005420 | 30.612 | 147 | 74 | 4 | 268 | 410 | 361 | 483 | 1.18e-12 | 70.1 |
| MS.gene061677.t1 | MTR_3g061340 | 37.500 | 112 | 67 | 2 | 7 | 117 | 12 | 121 | 7.52e-21 | 92.4 |
| MS.gene061677.t1 | MTR_3g061330 | 41.176 | 102 | 58 | 1 | 7 | 108 | 12 | 111 | 1.25e-20 | 91.3 |
| MS.gene061677.t1 | MTR_3g061310 | 38.596 | 114 | 66 | 2 | 1 | 114 | 8 | 117 | 4.44e-20 | 90.5 |
| MS.gene061677.t1 | MTR_3g098790 | 41.414 | 99 | 58 | 0 | 7 | 105 | 13 | 111 | 4.76e-20 | 91.3 |
| MS.gene061677.t1 | MTR_3g098790 | 26.126 | 222 | 124 | 7 | 209 | 409 | 97 | 299 | 1.90e-13 | 71.6 |
| MS.gene061677.t1 | MTR_7g050590 | 44.578 | 83 | 46 | 0 | 23 | 105 | 2 | 84 | 1.93e-19 | 89.0 |
| MS.gene061677.t1 | MTR_8g103940 | 41.000 | 100 | 59 | 0 | 7 | 106 | 39 | 138 | 1.96e-19 | 90.9 |
| MS.gene061677.t1 | MTR_8g103940 | 27.586 | 174 | 98 | 5 | 243 | 415 | 191 | 337 | 4.62e-14 | 74.3 |
| MS.gene061677.t1 | MTR_5g044670 | 39.604 | 101 | 61 | 0 | 7 | 107 | 16 | 116 | 6.24e-19 | 87.8 |
| MS.gene061677.t1 | MTR_1g035460 | 36.585 | 123 | 65 | 2 | 23 | 142 | 2 | 114 | 9.40e-19 | 88.2 |
| MS.gene061677.t1 | MTR_1g035460 | 30.935 | 139 | 71 | 3 | 287 | 425 | 187 | 300 | 1.54e-14 | 75.5 |
| MS.gene061677.t1 | MTR_3g061350 | 37.963 | 108 | 65 | 1 | 7 | 114 | 12 | 117 | 3.88e-18 | 84.7 |
| MS.gene061677.t1 | MTR_1g021270 | 23.002 | 413 | 243 | 13 | 4 | 413 | 13 | 353 | 4.96e-17 | 84.0 |
| MS.gene061677.t1 | MTR_3g061370 | 35.185 | 108 | 68 | 1 | 7 | 114 | 9 | 114 | 6.97e-17 | 81.3 |
| MS.gene061677.t1 | MTR_7g050640 | 39.785 | 93 | 56 | 0 | 7 | 99 | 13 | 105 | 1.45e-16 | 75.9 |
| MS.gene061677.t1 | MTR_1g021330 | 22.194 | 392 | 229 | 10 | 19 | 406 | 38 | 357 | 5.19e-15 | 76.6 |
| MS.gene061677.t1 | MTR_3g061220 | 33.945 | 109 | 57 | 2 | 7 | 115 | 12 | 105 | 2.34e-14 | 69.7 |
| MS.gene061677.t1 | MTR_1g108780 | 36.364 | 121 | 62 | 3 | 22 | 142 | 12 | 117 | 2.51e-14 | 75.1 |
| MS.gene061677.t1 | MTR_1g108780 | 31.507 | 146 | 73 | 5 | 274 | 417 | 178 | 298 | 4.15e-13 | 71.2 |
| MS.gene061677.t1 | MTR_1g021400 | 44.304 | 79 | 44 | 0 | 19 | 97 | 42 | 120 | 1.29e-12 | 69.3 |
| MS.gene061677.t1 | MTR_1g021350 | 39.773 | 88 | 53 | 0 | 10 | 97 | 24 | 111 | 2.86e-12 | 68.2 |
| MS.gene061677.t1 | MTR_1g021440 | 38.462 | 91 | 55 | 1 | 7 | 97 | 23 | 112 | 7.12e-12 | 66.6 |
| MS.gene061677.t1 | MTR_1g021440 | 38.462 | 91 | 55 | 1 | 7 | 97 | 23 | 112 | 8.23e-12 | 66.2 |
| MS.gene061677.t1 | MTR_1g021320 | 37.931 | 87 | 53 | 1 | 11 | 97 | 187 | 272 | 1.27e-11 | 67.4 |
| MS.gene061677.t1 | MTR_1g021440 | 41.772 | 79 | 46 | 0 | 19 | 97 | 34 | 112 | 1.86e-11 | 65.9 |
| MS.gene061677.t1 | MTR_1g021360 | 39.560 | 91 | 54 | 1 | 7 | 97 | 26 | 115 | 2.03e-11 | 66.2 |
| MS.gene061677.t1 | MTR_1g021360 | 40.506 | 79 | 47 | 0 | 19 | 97 | 194 | 272 | 4.27e-11 | 65.1 |
| MS.gene061677.t1 | MTR_1g021440 | 41.772 | 79 | 46 | 0 | 19 | 97 | 34 | 112 | 2.14e-11 | 65.9 |
| MS.gene061677.t1 | MTR_1g035570 | 33.333 | 111 | 67 | 3 | 5 | 115 | 7 | 110 | 3.09e-11 | 65.5 |
| MS.gene061677.t1 | MTR_1g021410 | 41.772 | 79 | 46 | 0 | 19 | 97 | 34 | 112 | 5.29e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061677.t1 | AT3G18990 | 49.392 | 411 | 134 | 8 | 3 | 412 | 2 | 339 | 2.00e-126 | 370 |
| MS.gene061677.t1 | AT3G18990 | 49.148 | 411 | 135 | 8 | 3 | 412 | 2 | 339 | 6.11e-125 | 367 |
| MS.gene061677.t1 | AT1G49480 | 64.972 | 177 | 43 | 3 | 237 | 412 | 66 | 224 | 8.60e-74 | 231 |
| MS.gene061677.t1 | AT1G49480 | 64.972 | 177 | 43 | 3 | 237 | 412 | 66 | 224 | 8.60e-74 | 231 |
| MS.gene061677.t1 | AT1G49480 | 64.972 | 177 | 43 | 3 | 237 | 412 | 66 | 224 | 8.60e-74 | 231 |
| MS.gene061677.t1 | AT4G01580 | 42.718 | 103 | 59 | 0 | 3 | 105 | 26 | 128 | 5.36e-24 | 99.4 |
| MS.gene061677.t1 | AT3G18960 | 40.777 | 103 | 61 | 0 | 3 | 105 | 26 | 128 | 9.46e-23 | 95.9 |
| MS.gene061677.t1 | AT3G18960 | 40.777 | 103 | 61 | 0 | 3 | 105 | 26 | 128 | 1.19e-22 | 95.9 |
| MS.gene061677.t1 | AT1G49475 | 35.849 | 106 | 64 | 2 | 3 | 105 | 27 | 131 | 7.64e-17 | 79.0 |
| MS.gene061677.t1 | AT3G18960 | 40.000 | 90 | 54 | 0 | 16 | 105 | 2 | 91 | 1.38e-16 | 77.8 |
Find 107 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTACATTAGAGAACAATTT+AGG | 0.133108 | 1.3:+18954413 | MS.gene061677:CDS |
| AAGAATTTGAACGGTGTTTC+AGG | 0.187714 | 1.3:+18954296 | MS.gene061677:CDS |
| AAAAGGTTGACAACCGAATT+TGG | 0.209979 | 1.3:+18953126 | MS.gene061677:CDS |
| TCATTGCAGAATTTGTTTAA+TGG | 0.251640 | 1.3:+18953473 | MS.gene061677:CDS |
| CTAAACTCAACCACGTTAAC+TGG | 0.274983 | 1.3:+18953501 | MS.gene061677:CDS |
| CATTGCAGAATTTGTTTAAT+GGG | 0.276665 | 1.3:+18953474 | MS.gene061677:CDS |
| TTATTAACCCCTTCCTCATT+AGG | 0.282526 | 1.3:-18953641 | None:intergenic |
| TGATGGCACTGTCTGGCGTC+TGG | 0.293334 | 1.3:+18953097 | MS.gene061677:CDS |
| TATCGACTCCTTTGAATTCC+TGG | 0.294296 | 1.3:+18953355 | MS.gene061677:CDS |
| GCGGCCCTCTTATTTATATA+GGG | 0.304158 | 1.3:+18954147 | MS.gene061677:CDS |
| TTTATATAGGGGATGTATAA+TGG | 0.315777 | 1.3:+18954159 | MS.gene061677:CDS |
| TATTTCCTAAGAAAATTATC+TGG | 0.317191 | 1.3:-18953035 | None:intergenic |
| TTACATTAGAGAACAATTTA+GGG | 0.336001 | 1.3:+18954414 | MS.gene061677:CDS |
| CTGGCGTCTGGGATTGAAAA+AGG | 0.342376 | 1.3:+18953109 | MS.gene061677:CDS |
| CAAAGCAGGAAGGCAAATAC+TGG | 0.378699 | 1.3:-18954268 | None:intergenic |
| ATCCTTGGCTTAACTTTGCT+CGG | 0.390374 | 1.3:-18954382 | None:intergenic |
| CGTGTAAAAGAGGACGAGTC+AGG | 0.395227 | 1.3:+18954503 | MS.gene061677:CDS |
| TTACCAATTGTCTAGTTTGA+AGG | 0.397207 | 1.3:-18951244 | None:intergenic |
| ATCCCTTCAAACTAGACAAT+TGG | 0.398966 | 1.3:+18951241 | MS.gene061677:CDS |
| TTGCTCGGCCTCCTTTATAT+AGG | 0.399413 | 1.3:-18954367 | None:intergenic |
| TTTCTAGTATTCACTTATGA+AGG | 0.411457 | 1.3:+18953203 | MS.gene061677:CDS |
| TGCGGCCCTCTTATTTATAT+AGG | 0.421241 | 1.3:+18954146 | MS.gene061677:CDS |
| ATTCAGTCAACCAGAGATAT+AGG | 0.424869 | 1.3:+18953560 | MS.gene061677:CDS |
| AGCCATCGACAAACCAAATT+CGG | 0.433503 | 1.3:-18953139 | None:intergenic |
| CTGTTCCTGATGGCACTGTC+TGG | 0.439890 | 1.3:+18953090 | MS.gene061677:CDS |
| CTTGCAATGCACCAGGAGTA+AGG | 0.441488 | 1.3:-18953394 | None:intergenic |
| GAATTTGGTTTGTCGATGGC+TGG | 0.442071 | 1.3:+18953141 | MS.gene061677:CDS |
| TATATCTCTGGTTGACTGAA+TGG | 0.443124 | 1.3:-18953558 | None:intergenic |
| TTAAACAAATTCTGCAATGA+TGG | 0.444180 | 1.3:-18953470 | None:intergenic |
| CACTTTGTTTCGTGTAAAAG+AGG | 0.446820 | 1.3:+18954493 | MS.gene061677:CDS |
| TTTGTTCAACGTTACTCCAT+TGG | 0.453832 | 1.3:+18953170 | MS.gene061677:CDS |
| ACATCCCCTATATAAATAAG+AGG | 0.455776 | 1.3:-18954152 | None:intergenic |
| CAACGTTACTCCATTGGCAT+TGG | 0.459331 | 1.3:+18953176 | MS.gene061677:CDS |
| ATGTAAATTCATACCATCCT+TGG | 0.460863 | 1.3:-18954397 | None:intergenic |
| GATGGCACTGTCTGGCGTCT+GGG | 0.465269 | 1.3:+18953098 | MS.gene061677:CDS |
| TGTCTAGTTTGAAGGGATGA+AGG | 0.472503 | 1.3:-18951236 | None:intergenic |
| CCTTTATATAGGCAGCGAAC+AGG | 0.472865 | 1.3:-18954356 | None:intergenic |
| ATTAAGCTTCAGATCTCTGA+TGG | 0.476714 | 1.3:+18954323 | MS.gene061677:CDS |
| CACGTTAACTGGGGAGATAT+CGG | 0.483067 | 1.3:+18953512 | MS.gene061677:CDS |
| GACTTGCAGCACTACCTCTC+TGG | 0.488129 | 1.3:-18954471 | None:intergenic |
| GCACCAGGAGTAAGGTTTGA+AGG | 0.495370 | 1.3:-18953386 | None:intergenic |
| GGGTTGCAATAGTCGAAAGC+TGG | 0.499258 | 1.3:-18953064 | None:intergenic |
| CCCTTCGGTACGGCTTCTCA+TGG | 0.500339 | 1.3:-18953288 | None:intergenic |
| TAACAGCAGAAGAAAGAGAA+AGG | 0.504497 | 1.3:+18954068 | MS.gene061677:CDS |
| GAACTGAACACCTATATCTC+TGG | 0.504709 | 1.3:-18953570 | None:intergenic |
| CTGATTTAGTTGAGCTGACA+CGG | 0.508771 | 1.3:-18954598 | None:intergenic |
| ACTCTACAGAATGGATTGGT+TGG | 0.509007 | 1.3:-18954118 | None:intergenic |
| CATAGCAAGGCCCTTCGGTA+CGG | 0.516273 | 1.3:-18953298 | None:intergenic |
| TAAACTCAACCACGTTAACT+GGG | 0.517161 | 1.3:+18953502 | MS.gene061677:CDS |
| TACCAATTGTCTAGTTTGAA+GGG | 0.519590 | 1.3:-18951243 | None:intergenic |
| CCTGTTCGCTGCCTATATAA+AGG | 0.526982 | 1.3:+18954356 | MS.gene061677:CDS |
| TCACCTTCAAACCTTACTCC+TGG | 0.530653 | 1.3:+18953383 | MS.gene061677:CDS |
| AGACGCCAGACAGTGCCATC+AGG | 0.531089 | 1.3:-18953095 | None:intergenic |
| AACAGCAGAAGAAAGAGAAA+GGG | 0.540440 | 1.3:+18954069 | MS.gene061677:CDS |
| ATTTGCATAGCAAGGCCCTT+CGG | 0.540781 | 1.3:-18953303 | None:intergenic |
| GTCTAGTTTGAAGGGATGAA+GGG | 0.543517 | 1.3:-18951235 | None:intergenic |
| GGTTTGAAGGTGATGAATCC+AGG | 0.544026 | 1.3:-18953373 | None:intergenic |
| GGATGATAATTTGCATAGCA+AGG | 0.545527 | 1.3:-18953311 | None:intergenic |
| AGAATGAGCTTGTGAAAAGA+AGG | 0.547922 | 1.3:-18951212 | None:intergenic |
| ATTGCAGAATTTGTTTAATG+GGG | 0.548631 | 1.3:+18953475 | MS.gene061677:CDS |
| TCCTGGTGCATTGCAAGACA+AGG | 0.548892 | 1.3:+18953400 | MS.gene061677:CDS |
| ACCTTGTCTTGCAATGCACC+AGG | 0.549286 | 1.3:-18953401 | None:intergenic |
| TTGTGTAACTGTAGGTGCAC+TGG | 0.551946 | 1.3:+18953970 | MS.gene061677:intron |
| CTGACACGGTGCTGCAAGTG+AGG | 0.554904 | 1.3:-18954584 | None:intergenic |
| TTGCGCTATCCTAATGAGGA+AGG | 0.562431 | 1.3:+18953632 | MS.gene061677:CDS |
| CGGCCCTCTTATTTATATAG+GGG | 0.563668 | 1.3:+18954148 | MS.gene061677:CDS |
| TATATAAATAAGAGGGCCGC+AGG | 0.566564 | 1.3:-18954144 | None:intergenic |
| TTAGAGAACAATTTAGGGGA+AGG | 0.568521 | 1.3:+18954419 | MS.gene061677:CDS |
| GGCCGAGCAAAGTTAAGCCA+AGG | 0.570951 | 1.3:+18954380 | MS.gene061677:CDS |
| TTTGGCTTGGTTGTGAAGAA+GGG | 0.575829 | 1.3:-18954535 | None:intergenic |
| AACCGAATTTGGTTTGTCGA+TGG | 0.576855 | 1.3:+18953137 | MS.gene061677:CDS |
| TGCAGAATTTGTTTAATGGG+GGG | 0.577486 | 1.3:+18953477 | MS.gene061677:CDS |
| TTGCAGAATTTGTTTAATGG+GGG | 0.578544 | 1.3:+18953476 | MS.gene061677:CDS |
| GCCATGAGAAGCCGTACCGA+AGG | 0.579614 | 1.3:+18953287 | MS.gene061677:CDS |
| TGCGCTATCCTAATGAGGAA+GGG | 0.580496 | 1.3:+18953633 | MS.gene061677:CDS |
| GAAATTGCGCTATCCTAATG+AGG | 0.581484 | 1.3:+18953628 | MS.gene061677:CDS |
| TTTGCAGAAAAGAATTTGAA+CGG | 0.582980 | 1.3:+18954287 | MS.gene061677:CDS |
| GGTTGCAATAGTCGAAAGCT+GGG | 0.584695 | 1.3:-18953063 | None:intergenic |
| TGATGAATCCAGGAATTCAA+AGG | 0.585718 | 1.3:-18953363 | None:intergenic |
| GCGCTATCCTAATGAGGAAG+GGG | 0.586754 | 1.3:+18953634 | MS.gene061677:CDS |
| GACAACTCTACAGAATGGAT+TGG | 0.593488 | 1.3:-18954122 | None:intergenic |
| CGATATCTCCCCAGTTAACG+TGG | 0.595115 | 1.3:-18953511 | None:intergenic |
| TAGAAAGTATCCAATGCCAA+TGG | 0.595339 | 1.3:-18953186 | None:intergenic |
| CACTGCTGAAAATGATGAGG+AGG | 0.595680 | 1.3:+18953997 | MS.gene061677:CDS |
| CGCAGGACAACTCTACAGAA+TGG | 0.599765 | 1.3:-18954127 | None:intergenic |
| GCAACCCTCACTGTTCCTGA+TGG | 0.602871 | 1.3:+18953080 | MS.gene061677:CDS |
| CATCCCCTATATAAATAAGA+GGG | 0.603183 | 1.3:-18954151 | None:intergenic |
| TTAAGCTTCAGATCTCTGAT+GGG | 0.604595 | 1.3:+18954324 | MS.gene061677:CDS |
| AGAAAACTTCAAGAAAGAAG+CGG | 0.610439 | 1.3:+18953675 | MS.gene061677:CDS |
| GCGCAATTTCAATCCTTCAG+TGG | 0.610517 | 1.3:-18953615 | None:intergenic |
| GATGGAGTATGATTCTTCGC+TGG | 0.611475 | 1.3:-18953452 | None:intergenic |
| CCATGAGAAGCCGTACCGAA+GGG | 0.614066 | 1.3:+18953288 | MS.gene061677:CDS |
| AGATCTCTGATGGGAGACAG+TGG | 0.629937 | 1.3:+18954333 | MS.gene061677:CDS |
| TACATTAGAGAACAATTTAG+GGG | 0.630150 | 1.3:+18954415 | MS.gene061677:CDS |
| GTGTAAAAGAGGACGAGTCA+GGG | 0.630504 | 1.3:+18954504 | MS.gene061677:CDS |
| GAGCAAAGTTAAGCCAAGGA+TGG | 0.643193 | 1.3:+18954384 | MS.gene061677:CDS |
| TGACACGGTGCTGCAAGTGA+GGG | 0.655075 | 1.3:-18954583 | None:intergenic |
| GTTCGCTGCCTATATAAAGG+AGG | 0.657822 | 1.3:+18954359 | MS.gene061677:CDS |
| AGTGCCATCAGGAACAGTGA+GGG | 0.674235 | 1.3:-18953084 | None:intergenic |
| TGAGCTGCTTAGAACCAGAG+AGG | 0.682743 | 1.3:+18954457 | MS.gene061677:CDS |
| AGCCACTGCTGAAAATGATG+AGG | 0.685162 | 1.3:+18953994 | MS.gene061677:CDS |
| CAGTGCCATCAGGAACAGTG+AGG | 0.694859 | 1.3:-18953085 | None:intergenic |
| TTGTGAAAAGAAGGACGAGG+AGG | 0.697547 | 1.3:-18951203 | None:intergenic |
| AGCTTGTGAAAAGAAGGACG+AGG | 0.710821 | 1.3:-18951206 | None:intergenic |
| AAACTCAACCACGTTAACTG+GGG | 0.714026 | 1.3:+18953503 | MS.gene061677:CDS |
| CATTCTGTAGAGTTGTCCTG+CGG | 0.717327 | 1.3:+18954128 | MS.gene061677:CDS |
| GTTAACTGGGGAGATATCGG+TGG | 0.726802 | 1.3:+18953515 | MS.gene061677:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTATTATTAAATAAAT+TGG | - | chr1.3:18952765-18952784 | None:intergenic | 0.0% |
| !!! | ATTTTTTTTTTTTTTGGAAT+TGG | + | chr1.3:18951291-18951310 | MS.gene061677:intron | 10.0% |
| !!! | TCATTCATTTTTTTTTTTTT+TGG | + | chr1.3:18951285-18951304 | MS.gene061677:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTGGAATT+GGG | + | chr1.3:18951292-18951311 | MS.gene061677:intron | 10.0% |
| !! | AAATCCAAACTTTATAAAAA+AGG | - | chr1.3:18951439-18951458 | None:intergenic | 15.0% |
| !! | AATCCAAACTTTATAAAAAA+GGG | - | chr1.3:18951438-18951457 | None:intergenic | 15.0% |
| !! | CTTAAAATCATTAATATATG+TGG | + | chr1.3:18951787-18951806 | MS.gene061677:intron | 15.0% |
| !! | TTATGAGTATTACTAATATT+TGG | + | chr1.3:18952979-18952998 | MS.gene061677:intron | 15.0% |
| !!! | ATAATTTTCTTAGGAAATAT+GGG | + | chr1.3:18953039-18953058 | MS.gene061677:CDS | 15.0% |
| !!! | CACATATATTAATGATTTTA+AGG | - | chr1.3:18951789-18951808 | None:intergenic | 15.0% |
| !!! | TATAAAGTTTGGATTTTTTT+AGG | + | chr1.3:18951443-18951462 | MS.gene061677:intron | 15.0% |
| !!! | TATGAATTTAAGTTTACATA+AGG | + | chr1.3:18952829-18952848 | MS.gene061677:intron | 15.0% |
| !! | ATCCAAACTTTATAAAAAAG+GGG | - | chr1.3:18951437-18951456 | None:intergenic | 20.0% |
| !! | TATTTCCTAAGAAAATTATC+TGG | - | chr1.3:18953038-18953057 | None:intergenic | 20.0% |
| !! | TTACATTAGAGAACAATTTA+GGG | + | chr1.3:18954414-18954433 | MS.gene061677:CDS | 20.0% |
| !! | TTTAATTGAGACTATCATAT+TGG | + | chr1.3:18951944-18951963 | MS.gene061677:intron | 20.0% |
| !! | TTTACATTAGAGAACAATTT+AGG | + | chr1.3:18954413-18954432 | MS.gene061677:CDS | 20.0% |
| !!! | AAGCATAAAAGTATTTTTGT+TGG | - | chr1.3:18952810-18952829 | None:intergenic | 20.0% |
| !!! | AATTTAATTTGTGTAACTGT+AGG | + | chr1.3:18953962-18953981 | MS.gene061677:intron | 20.0% |
| !!! | CTTTTTAATTTTCGTAAAAG+AGG | + | chr1.3:18952393-18952412 | MS.gene061677:intron | 20.0% |
| !!! | GATAATTTTCTTAGGAAATA+TGG | + | chr1.3:18953038-18953057 | MS.gene061677:CDS | 20.0% |
| !!! | TAATTTTCTTAGGAAATATG+GGG | + | chr1.3:18953040-18953059 | MS.gene061677:CDS | 20.0% |
| !!! | TTTTGTTTCATGTTTTTGAT+TGG | + | chr1.3:18951316-18951335 | MS.gene061677:intron | 20.0% |
| ! | AAAAACTACTCATTTCCAAA+TGG | - | chr1.3:18952504-18952523 | None:intergenic | 25.0% |
| ! | AAAACCTCTTCTATTAAGTA+TGG | + | chr1.3:18952453-18952472 | MS.gene061677:intron | 25.0% |
| ! | AAAAGATCAAAAGAAGTTCA+AGG | - | chr1.3:18952378-18952397 | None:intergenic | 25.0% |
| ! | AGACAATGAAATCATAAACA+TGG | - | chr1.3:18952913-18952932 | None:intergenic | 25.0% |
| ! | AGTCTCAATTAAAACACATT+TGG | - | chr1.3:18951937-18951956 | None:intergenic | 25.0% |
| ! | ATAAACATGGAATCATAACA+CGG | - | chr1.3:18952900-18952919 | None:intergenic | 25.0% |
| ! | TACATTAGAGAACAATTTAG+GGG | + | chr1.3:18954415-18954434 | MS.gene061677:CDS | 25.0% |
| ! | TCTTCAATGTCTTCAAAAAT+AGG | - | chr1.3:18953335-18953354 | None:intergenic | 25.0% |
| ! | TTAAACAAATTCTGCAATGA+TGG | - | chr1.3:18953473-18953492 | None:intergenic | 25.0% |
| ! | TTATGATTGTTGCAAGAAAA+GGG | + | chr1.3:18951351-18951370 | MS.gene061677:intron | 25.0% |
| ! | TTCTATTAAGTATGGAAAGA+TGG | + | chr1.3:18952461-18952480 | MS.gene061677:intron | 25.0% |
| ! | TTTATATAGGGGATGTATAA+TGG | + | chr1.3:18954159-18954178 | MS.gene061677:CDS | 25.0% |
| ! | TTTGCAGAAAAGAATTTGAA+CGG | + | chr1.3:18954287-18954306 | MS.gene061677:CDS | 25.0% |
| !! | AACCAACCAATTCAATTTTA+GGG | - | chr1.3:18951657-18951676 | None:intergenic | 25.0% |
| !! | ATTGCAGAATTTGTTTAATG+GGG | + | chr1.3:18953475-18953494 | MS.gene061677:CDS | 25.0% |
| !! | CATTGCAGAATTTGTTTAAT+GGG | + | chr1.3:18953474-18953493 | MS.gene061677:CDS | 25.0% |
| !! | TAACCAACCAATTCAATTTT+AGG | - | chr1.3:18951658-18951677 | None:intergenic | 25.0% |
| !! | TCATTGCAGAATTTGTTTAA+TGG | + | chr1.3:18953473-18953492 | MS.gene061677:CDS | 25.0% |
| !! | TTTCTAGTATTCACTTATGA+AGG | + | chr1.3:18953203-18953222 | MS.gene061677:CDS | 25.0% |
| !! | TTTTAGCCCTAAAATTGAAT+TGG | + | chr1.3:18951648-18951667 | MS.gene061677:intron | 25.0% |
| !!! | AATGTTATTTTCAATTGCAG+AGG | + | chr1.3:18953009-18953028 | MS.gene061677:intron | 25.0% |
| !!! | AATTTGATTCAGTGTTGTTT+AGG | + | chr1.3:18951570-18951589 | MS.gene061677:intron | 25.0% |
| !!! | TACCCCTTTTTTATAAAGTT+TGG | + | chr1.3:18951432-18951451 | MS.gene061677:intron | 25.0% |
| !!! | TTTAGGTTTTGTGATTTTTC+TGG | + | chr1.3:18951587-18951606 | MS.gene061677:intron | 25.0% |
| !!! | TTTATAAAAAAGGGGTATCA+GGG | - | chr1.3:18951429-18951448 | None:intergenic | 25.0% |
| AAAAGAAGTTCAAGGATTTG+GGG | - | chr1.3:18952370-18952389 | None:intergenic | 30.0% | |
| AAACTCAGTGATCAAAATCA+TGG | - | chr1.3:18951482-18951501 | None:intergenic | 30.0% | |
| AACTCAGTGATCAAAATCAT+GGG | - | chr1.3:18951481-18951500 | None:intergenic | 30.0% | |
| ACATCCCCTATATAAATAAG+AGG | - | chr1.3:18954155-18954174 | None:intergenic | 30.0% | |
| ACTAACTACCATGCTAAAAA+CGG | - | chr1.3:18952540-18952559 | None:intergenic | 30.0% | |
| AGAAAACTTCAAGAAAGAAG+CGG | + | chr1.3:18953675-18953694 | MS.gene061677:CDS | 30.0% | |
| ATGTAAATTCATACCATCCT+TGG | - | chr1.3:18954400-18954419 | None:intergenic | 30.0% | |
| ATTAACTACCATGCTGAAAA+TGG | - | chr1.3:18952090-18952109 | None:intergenic | 30.0% | |
| CAAAAGAAGTTCAAGGATTT+GGG | - | chr1.3:18952371-18952390 | None:intergenic | 30.0% | |
| CACTTATTAAGTATGACCTT+TGG | + | chr1.3:18952014-18952033 | MS.gene061677:intron | 30.0% | |
| CATCCCCTATATAAATAAGA+GGG | - | chr1.3:18954154-18954173 | None:intergenic | 30.0% | |
| CTGTTATGATTCTTGATGAA+GGG | + | chr1.3:18951509-18951528 | MS.gene061677:intron | 30.0% | |
| CTTATCTAAAAGAGCTTACT+TGG | - | chr1.3:18953710-18953729 | None:intergenic | 30.0% | |
| CTTTCCATACTTAATAGAAG+AGG | - | chr1.3:18952460-18952479 | None:intergenic | 30.0% | |
| CTTTGAATGAGAAATTCTTG+TGG | + | chr1.3:18951701-18951720 | MS.gene061677:intron | 30.0% | |
| GTTATGATTGTTGCAAGAAA+AGG | + | chr1.3:18951350-18951369 | MS.gene061677:intron | 30.0% | |
| TCAAAAGAAGTTCAAGGATT+TGG | - | chr1.3:18952372-18952391 | None:intergenic | 30.0% | |
| TCTGTTATGATTCTTGATGA+AGG | + | chr1.3:18951508-18951527 | MS.gene061677:intron | 30.0% | |
| TTGCATATCTAGGAAATTTG+AGG | - | chr1.3:18952429-18952448 | None:intergenic | 30.0% | |
| TTTAAACTCGAGATTTGACT+CGG | - | chr1.3:18952944-18952963 | None:intergenic | 30.0% | |
| ! | ATTTTCAGTCACTCATTCAA+AGG | - | chr1.3:18952276-18952295 | None:intergenic | 30.0% |
| ! | GGATTCCAGATAATTTTCTT+AGG | + | chr1.3:18953030-18953049 | MS.gene061677:CDS | 30.0% |
| ! | GGTTTTTCATTTGCATATCT+AGG | - | chr1.3:18952439-18952458 | None:intergenic | 30.0% |
| ! | TACCAATTGTCTAGTTTGAA+GGG | - | chr1.3:18951246-18951265 | None:intergenic | 30.0% |
| ! | TTACCAATTGTCTAGTTTGA+AGG | - | chr1.3:18951247-18951266 | None:intergenic | 30.0% |
| ! | TTGCAAGAAAAGGGTTTTTA+GGG | + | chr1.3:18951360-18951379 | MS.gene061677:intron | 30.0% |
| ! | TTGCAGAATTTGTTTAATGG+GGG | + | chr1.3:18953476-18953495 | MS.gene061677:CDS | 30.0% |
| ! | TTTTAAACGGGTCATATACT+CGG | - | chr1.3:18952245-18952264 | None:intergenic | 30.0% |
| ! | TTTTTAACAGGTCATGTACT+CGG | - | chr1.3:18952650-18952669 | None:intergenic | 30.0% |
| !! | AAATTGGTTTGACCTAAGTA+TGG | - | chr1.3:18952749-18952768 | None:intergenic | 30.0% |
| !! | AATTGGTTTGACCTAAGTAT+GGG | - | chr1.3:18952748-18952767 | None:intergenic | 30.0% |
| !! | ATGATTTTGATCACTGAGTT+TGG | + | chr1.3:18951481-18951500 | MS.gene061677:intron | 30.0% |
| !! | CTTTATAAAAAAGGGGTATC+AGG | - | chr1.3:18951430-18951449 | None:intergenic | 30.0% |
| !! | TGATTTTAAGGAAAACATCG+AGG | - | chr1.3:18951777-18951796 | None:intergenic | 30.0% |
| !!! | AAAGGTGCGTTGTTTTTAAA+CGG | - | chr1.3:18952258-18952277 | None:intergenic | 30.0% |
| !!! | AAAGGTGCGTTTTTTTTAAC+AGG | - | chr1.3:18952662-18952681 | None:intergenic | 30.0% |
| !!! | AGGGTTTTGGTTGATTTTTT+AGG | + | chr1.3:18951379-18951398 | MS.gene061677:intron | 30.0% |
| !!! | GGGTTTTGGTTGATTTTTTA+GGG | + | chr1.3:18951380-18951399 | MS.gene061677:intron | 30.0% |
| !!! | TCACCTTTTGAAATTATGAC+CGG | + | chr1.3:18953857-18953876 | MS.gene061677:intron | 30.0% |
| AAAAGGTTGACAACCGAATT+TGG | + | chr1.3:18953126-18953145 | MS.gene061677:CDS | 35.0% | |
| AACAGCAGAAGAAAGAGAAA+GGG | + | chr1.3:18954069-18954088 | MS.gene061677:CDS | 35.0% | |
| AAGAATTTGAACGGTGTTTC+AGG | + | chr1.3:18954296-18954315 | MS.gene061677:CDS | 35.0% | |
| ACACATTTCCAAATTGCTAC+TGG | - | chr1.3:18952050-18952069 | None:intergenic | 35.0% | |
| ACACCGGTCATAATTTCAAA+AGG | - | chr1.3:18953863-18953882 | None:intergenic | 35.0% | |
| AGAATGAGCTTGTGAAAAGA+AGG | - | chr1.3:18951215-18951234 | None:intergenic | 35.0% | |
| AGCCCTAAAATTGAATTGGT+TGG | + | chr1.3:18951652-18951671 | MS.gene061677:intron | 35.0% | |
| ATCCCTTCAAACTAGACAAT+TGG | + | chr1.3:18951241-18951260 | MS.gene061677:CDS | 35.0% | |
| ATTAAGCTTCAGATCTCTGA+TGG | + | chr1.3:18954323-18954342 | MS.gene061677:CDS | 35.0% | |
| ATTCAGTCAACCAGAGATAT+AGG | + | chr1.3:18953560-18953579 | MS.gene061677:CDS | 35.0% | |
| CTAGGAAATTTGAGGATTTG+CGG | - | chr1.3:18952421-18952440 | None:intergenic | 35.0% | |
| GAGTTTAAAAAGTCCACTGA+AGG | + | chr1.3:18953602-18953621 | MS.gene061677:CDS | 35.0% | |
| GGAAAAAACCATCAGTGATT+AGG | - | chr1.3:18952629-18952648 | None:intergenic | 35.0% | |
| TAAACTCAACCACGTTAACT+GGG | + | chr1.3:18953502-18953521 | MS.gene061677:CDS | 35.0% | |
| TAACAGCAGAAGAAAGAGAA+AGG | + | chr1.3:18954068-18954087 | MS.gene061677:CDS | 35.0% | |
| TACTGGCAATAACAATCCAA+AGG | - | chr1.3:18952033-18952052 | None:intergenic | 35.0% | |
| TATATCTCTGGTTGACTGAA+TGG | - | chr1.3:18953561-18953580 | None:intergenic | 35.0% | |
| TGATGAATCCAGGAATTCAA+AGG | - | chr1.3:18953366-18953385 | None:intergenic | 35.0% | |
| TGTTATTGCCAGTAGCAATT+TGG | + | chr1.3:18952039-18952058 | MS.gene061677:intron | 35.0% | |
| TTAAGCTTCAGATCTCTGAT+GGG | + | chr1.3:18954324-18954343 | MS.gene061677:CDS | 35.0% | |
| TTAGAGAACAATTTAGGGGA+AGG | + | chr1.3:18954419-18954438 | MS.gene061677:CDS | 35.0% | |
| TTATTAACCCCTTCCTCATT+AGG | - | chr1.3:18953644-18953663 | None:intergenic | 35.0% | |
| TTTGTTCAACGTTACTCCAT+TGG | + | chr1.3:18953170-18953189 | MS.gene061677:CDS | 35.0% | |
| ! | AAACCTTTTCTCACCAGAAA+AGG | + | chr1.3:18952342-18952361 | MS.gene061677:intron | 35.0% |
| ! | CAAATTCTTTTCTGCAAAGC+AGG | - | chr1.3:18954285-18954304 | None:intergenic | 35.0% |
| ! | CACTTTGTTTCGTGTAAAAG+AGG | + | chr1.3:18954493-18954512 | MS.gene061677:CDS | 35.0% |
| ! | GGATGATAATTTGCATAGCA+AGG | - | chr1.3:18953314-18953333 | None:intergenic | 35.0% |
| ! | GTTGCAAGAAAAGGGTTTTT+AGG | + | chr1.3:18951359-18951378 | MS.gene061677:intron | 35.0% |
| ! | TGCAGAATTTGTTTAATGGG+GGG | + | chr1.3:18953477-18953496 | MS.gene061677:CDS | 35.0% |
| ! | TTTTTGCATGGCTCACATTT+TGG | - | chr1.3:18954556-18954575 | None:intergenic | 35.0% |
| !! | GAAAGATGGATTGCTATTAC+TGG | + | chr1.3:18952475-18952494 | MS.gene061677:intron | 35.0% |
| !! | GCACTGACATTTTAGATCAA+AGG | + | chr1.3:18953759-18953778 | MS.gene061677:intron | 35.0% |
| !! | GTGTTGAAATTTTGATCACC+AGG | + | chr1.3:18951613-18951632 | MS.gene061677:intron | 35.0% |
| !! | GTTAGTTTGTTTGTGTCTAG+TGG | + | chr1.3:18951674-18951693 | MS.gene061677:intron | 35.0% |
| !! | TAGAAAGTATCCAATGCCAA+TGG | - | chr1.3:18953189-18953208 | None:intergenic | 35.0% |
| !! | TTGCAAGACAAGGTTTTTAG+TGG | + | chr1.3:18953410-18953429 | MS.gene061677:CDS | 35.0% |
| !!! | AAGGTGCGTTGTTTTTAAAC+GGG | - | chr1.3:18952257-18952276 | None:intergenic | 35.0% |
| !!! | ATGAATCTCCGTTTTTAGCA+TGG | + | chr1.3:18952529-18952548 | MS.gene061677:intron | 35.0% |
| !!! | CAAGGTTTTTAGTGGATCTT+TGG | + | chr1.3:18953418-18953437 | MS.gene061677:CDS | 35.0% |
| !!! | GAAAAGGGTTTTTAGGGTTT+TGG | + | chr1.3:18951366-18951385 | MS.gene061677:intron | 35.0% |
| !!! | GGTTGATTTTTTAGGGTATG+TGG | + | chr1.3:18951387-18951406 | MS.gene061677:intron | 35.0% |
| AAACTCAACCACGTTAACTG+GGG | + | chr1.3:18953503-18953522 | MS.gene061677:CDS | 40.0% | |
| AATGATGTGTGTCAGACACT+CGG | - | chr1.3:18953790-18953809 | None:intergenic | 40.0% | |
| AGCCATCGACAAACCAAATT+CGG | - | chr1.3:18953142-18953161 | None:intergenic | 40.0% | |
| ATATCGCACCTAATCACTGA+TGG | + | chr1.3:18952618-18952637 | MS.gene061677:intron | 40.0% | |
| ATCCTTGGCTTAACTTTGCT+CGG | - | chr1.3:18954385-18954404 | None:intergenic | 40.0% | |
| CAAGGAAGTTTGAGGATTCT+CGG | - | chr1.3:18952695-18952714 | None:intergenic | 40.0% | |
| CTAAAATCAACTCAGCAACC+TGG | - | chr1.3:18951634-18951653 | None:intergenic | 40.0% | |
| CTAAACTCAACCACGTTAAC+TGG | + | chr1.3:18953501-18953520 | MS.gene061677:CDS | 40.0% | |
| CTGATTTAGTTGAGCTGACA+CGG | - | chr1.3:18954601-18954620 | None:intergenic | 40.0% | |
| GAAATTGCGCTATCCTAATG+AGG | + | chr1.3:18953628-18953647 | MS.gene061677:CDS | 40.0% | |
| GAACTGAACACCTATATCTC+TGG | - | chr1.3:18953573-18953592 | None:intergenic | 40.0% | |
| GACAACTCTACAGAATGGAT+TGG | - | chr1.3:18954125-18954144 | None:intergenic | 40.0% | |
| GGCTTTACATTTGCAGATCT+AGG | - | chr1.3:18952309-18952328 | None:intergenic | 40.0% | |
| TATATAAATAAGAGGGCCGC+AGG | - | chr1.3:18954147-18954166 | None:intergenic | 40.0% | |
| TGCTATTACTGGTAGCCATT+TGG | + | chr1.3:18952486-18952505 | MS.gene061677:intron | 40.0% | |
| TGGTCGTGTGTGTTAATTTC+AGG | + | chr1.3:18952219-18952238 | MS.gene061677:intron | 40.0% | |
| ! | ACGAATCTCCATTTTCAGCA+TGG | + | chr1.3:18952079-18952098 | MS.gene061677:intron | 40.0% |
| ! | CGGCCCTCTTATTTATATAG+GGG | + | chr1.3:18954148-18954167 | MS.gene061677:CDS | 40.0% |
| ! | GAGGGTTCAACATTTTTGCA+TGG | - | chr1.3:18954568-18954587 | None:intergenic | 40.0% |
| ! | GCGGCCCTCTTATTTATATA+GGG | + | chr1.3:18954147-18954166 | MS.gene061677:CDS | 40.0% |
| ! | GTCTAGTTTGAAGGGATGAA+GGG | - | chr1.3:18951238-18951257 | None:intergenic | 40.0% |
| ! | TCTGGTGAGAAAAGGTTTTC+TGG | - | chr1.3:18952340-18952359 | None:intergenic | 40.0% |
| ! | TGCGGCCCTCTTATTTATAT+AGG | + | chr1.3:18954146-18954165 | MS.gene061677:CDS | 40.0% |
| ! | TGTCTAGTTTGAAGGGATGA+AGG | - | chr1.3:18951239-18951258 | None:intergenic | 40.0% |
| ! | TTCTTTTCTGCAAAGCAGGA+AGG | - | chr1.3:18954281-18954300 | None:intergenic | 40.0% |
| !! | AAAGGTTTTCTGGTGAGAAG+AGG | - | chr1.3:18952330-18952349 | None:intergenic | 40.0% |
| !! | AACCGAATTTGGTTTGTCGA+TGG | + | chr1.3:18953137-18953156 | MS.gene061677:CDS | 40.0% |
| !! | ACTCTACAGAATGGATTGGT+TGG | - | chr1.3:18954121-18954140 | None:intergenic | 40.0% |
| !! | GGCAAAAAGCATCTGCAATT+AGG | - | chr1.3:18952195-18952214 | None:intergenic | 40.0% |
| !! | TATCGACTCCTTTGAATTCC+TGG | + | chr1.3:18953355-18953374 | MS.gene061677:CDS | 40.0% |
| !! | TTTGGCTTGGTTGTGAAGAA+GGG | - | chr1.3:18954538-18954557 | None:intergenic | 40.0% |
| !!! | TTTTGGCTTGGTTGTGAAGA+AGG | - | chr1.3:18954539-18954558 | None:intergenic | 40.0% |
| AGCCACTGCTGAAAATGATG+AGG | + | chr1.3:18953994-18954013 | MS.gene061677:CDS | 45.0% | |
| AGCTTGTGAAAAGAAGGACG+AGG | - | chr1.3:18951209-18951228 | None:intergenic | 45.0% | |
| ATGATGTGTGTCAGACACTC+GGG | - | chr1.3:18953789-18953808 | None:intergenic | 45.0% | |
| ATTAACACACACGACCACAC+AGG | - | chr1.3:18952216-18952235 | None:intergenic | 45.0% | |
| ATTCTCGGTCACACGTTCAA+AGG | - | chr1.3:18952680-18952699 | None:intergenic | 45.0% | |
| ATTTGCATAGCAAGGCCCTT+CGG | - | chr1.3:18953306-18953325 | None:intergenic | 45.0% | |
| CAAAGCAGGAAGGCAAATAC+TGG | - | chr1.3:18954271-18954290 | None:intergenic | 45.0% | |
| CAACGTTACTCCATTGGCAT+TGG | + | chr1.3:18953176-18953195 | MS.gene061677:CDS | 45.0% | |
| CACGTTAACTGGGGAGATAT+CGG | + | chr1.3:18953512-18953531 | MS.gene061677:CDS | 45.0% | |
| CACTGCTGAAAATGATGAGG+AGG | + | chr1.3:18953997-18954016 | MS.gene061677:CDS | 45.0% | |
| CATTCTGTAGAGTTGTCCTG+CGG | + | chr1.3:18954128-18954147 | MS.gene061677:CDS | 45.0% | |
| CCTGTTCGCTGCCTATATAA+AGG | + | chr1.3:18954356-18954375 | MS.gene061677:CDS | 45.0% | |
| CCTTTATATAGGCAGCGAAC+AGG | - | chr1.3:18954359-18954378 | None:intergenic | 45.0% | |
| CGAGAATCCTCAAACTTCCT+TGG | + | chr1.3:18952693-18952712 | MS.gene061677:intron | 45.0% | |
| CTTCCTGTGTCAGTGTTTCA+TGG | + | chr1.3:18953902-18953921 | MS.gene061677:intron | 45.0% | |
| GAGCAAAGTTAAGCCAAGGA+TGG | + | chr1.3:18954384-18954403 | MS.gene061677:CDS | 45.0% | |
| GATGGAGTATGATTCTTCGC+TGG | - | chr1.3:18953455-18953474 | None:intergenic | 45.0% | |
| GCAAAGACCAAGGAAGTTTG+AGG | - | chr1.3:18952703-18952722 | None:intergenic | 45.0% | |
| GCGCAATTTCAATCCTTCAG+TGG | - | chr1.3:18953618-18953637 | None:intergenic | 45.0% | |
| GGTTGCAATAGTCGAAAGCT+GGG | - | chr1.3:18953066-18953085 | None:intergenic | 45.0% | |
| GGTTTGAAGGTGATGAATCC+AGG | - | chr1.3:18953376-18953395 | None:intergenic | 45.0% | |
| GTGTAAAAGAGGACGAGTCA+GGG | + | chr1.3:18954504-18954523 | MS.gene061677:CDS | 45.0% | |
| GTTCGCTGCCTATATAAAGG+AGG | + | chr1.3:18954359-18954378 | MS.gene061677:CDS | 45.0% | |
| TAGCCATGAAACACTGACAC+AGG | - | chr1.3:18953908-18953927 | None:intergenic | 45.0% | |
| TCACCTTCAAACCTTACTCC+TGG | + | chr1.3:18953383-18953402 | MS.gene061677:CDS | 45.0% | |
| TGCGCTATCCTAATGAGGAA+GGG | + | chr1.3:18953633-18953652 | MS.gene061677:CDS | 45.0% | |
| TTGCAGATCTAGGAAGTTCG+AGG | - | chr1.3:18952299-18952318 | None:intergenic | 45.0% | |
| TTGCGCTATCCTAATGAGGA+AGG | + | chr1.3:18953632-18953651 | MS.gene061677:CDS | 45.0% | |
| TTGCTCGGCCTCCTTTATAT+AGG | - | chr1.3:18954370-18954389 | None:intergenic | 45.0% | |
| TTGTGAAAAGAAGGACGAGG+AGG | - | chr1.3:18951206-18951225 | None:intergenic | 45.0% | |
| TTGTGTAACTGTAGGTGCAC+TGG | + | chr1.3:18953970-18953989 | MS.gene061677:intron | 45.0% | |
| ! | CTCCTCATCATTTTCAGCAG+TGG | - | chr1.3:18953999-18954018 | None:intergenic | 45.0% |
| !! | GAATTTGGTTTGTCGATGGC+TGG | + | chr1.3:18953141-18953160 | MS.gene061677:CDS | 45.0% |
| !! | GCTCCTTTTCTGGTGAGAAA+AGG | - | chr1.3:18952348-18952367 | None:intergenic | 45.0% |
| AACCACACGTGTCAGTGTAG+CGG | - | chr1.3:18953824-18953843 | None:intergenic | 50.0% | |
| ACCTTGTCTTGCAATGCACC+AGG | - | chr1.3:18953404-18953423 | None:intergenic | 50.0% | |
| AGATCTCTGATGGGAGACAG+TGG | + | chr1.3:18954333-18954352 | MS.gene061677:CDS | 50.0% | |
| AGTGCCATCAGGAACAGTGA+GGG | - | chr1.3:18953087-18953106 | None:intergenic | 50.0% | |
| CGACACTGAGATGACAACAC+CGG | - | chr1.3:18953879-18953898 | None:intergenic | 50.0% | |
| CGATATCTCCCCAGTTAACG+TGG | - | chr1.3:18953514-18953533 | None:intergenic | 50.0% | |
| CGCAGGACAACTCTACAGAA+TGG | - | chr1.3:18954130-18954149 | None:intergenic | 50.0% | |
| CGTGTAAAAGAGGACGAGTC+AGG | + | chr1.3:18954503-18954522 | MS.gene061677:CDS | 50.0% | |
| CTACCAACGAGCAAAGACCA+AGG | - | chr1.3:18952713-18952732 | None:intergenic | 50.0% | |
| CTTGCAATGCACCAGGAGTA+AGG | - | chr1.3:18953397-18953416 | None:intergenic | 50.0% | |
| GCACCAGGAGTAAGGTTTGA+AGG | - | chr1.3:18953389-18953408 | None:intergenic | 50.0% | |
| GCGCTATCCTAATGAGGAAG+GGG | + | chr1.3:18953634-18953653 | MS.gene061677:CDS | 50.0% | |
| GGGTTGCAATAGTCGAAAGC+TGG | - | chr1.3:18953067-18953086 | None:intergenic | 50.0% | |
| GTTAACTGGGGAGATATCGG+TGG | + | chr1.3:18953515-18953534 | MS.gene061677:CDS | 50.0% | |
| TCCTGGTGCATTGCAAGACA+AGG | + | chr1.3:18953400-18953419 | MS.gene061677:CDS | 50.0% | |
| TGACCTAAGTATGGGCCCAA+TGG | - | chr1.3:18952740-18952759 | None:intergenic | 50.0% | |
| TGAGCTGCTTAGAACCAGAG+AGG | + | chr1.3:18954457-18954476 | MS.gene061677:CDS | 50.0% | |
| ! | CTGGCGTCTGGGATTGAAAA+AGG | + | chr1.3:18953109-18953128 | MS.gene061677:CDS | 50.0% |
| ! | CTTCCTTGGTCTTTGCTCGT+TGG | + | chr1.3:18952707-18952726 | MS.gene061677:intron | 50.0% |
| !! | AGGATTTGGGGCTCCTTTTC+TGG | - | chr1.3:18952358-18952377 | None:intergenic | 50.0% |
| !! | CTCGTTGGTAGTGCACCATT+GGG | + | chr1.3:18952722-18952741 | MS.gene061677:intron | 50.0% |
| !! | GCAGATGCTTTTTGCCTGTG+TGG | + | chr1.3:18952199-18952218 | MS.gene061677:intron | 50.0% |
| !!! | GCATGGCTCACATTTTGGCT+TGG | - | chr1.3:18954551-18954570 | None:intergenic | 50.0% |
| CAGTGCCATCAGGAACAGTG+AGG | - | chr1.3:18953088-18953107 | None:intergenic | 55.0% | |
| CATAGCAAGGCCCTTCGGTA+CGG | - | chr1.3:18953301-18953320 | None:intergenic | 55.0% | |
| CCATGAGAAGCCGTACCGAA+GGG | + | chr1.3:18953288-18953307 | MS.gene061677:CDS | 55.0% | |
| CTGTTCCTGATGGCACTGTC+TGG | + | chr1.3:18953090-18953109 | MS.gene061677:CDS | 55.0% | |
| GACTTGCAGCACTACCTCTC+TGG | - | chr1.3:18954474-18954493 | None:intergenic | 55.0% | |
| GCAACCCTCACTGTTCCTGA+TGG | + | chr1.3:18953080-18953099 | MS.gene061677:CDS | 55.0% | |
| GCACCATTGGGCCCATACTT+AGG | + | chr1.3:18952734-18952753 | MS.gene061677:intron | 55.0% | |
| GGCCGAGCAAAGTTAAGCCA+AGG | + | chr1.3:18954380-18954399 | MS.gene061677:CDS | 55.0% | |
| !! | GCTCGTTGGTAGTGCACCAT+TGG | + | chr1.3:18952721-18952740 | MS.gene061677:intron | 55.0% |
| !! | TGACACGGTGCTGCAAGTGA+GGG | - | chr1.3:18954586-18954605 | None:intergenic | 55.0% |
| AGACGCCAGACAGTGCCATC+AGG | - | chr1.3:18953098-18953117 | None:intergenic | 60.0% | |
| CACACGTGTCAGTGTAGCGG+CGG | - | chr1.3:18953821-18953840 | None:intergenic | 60.0% | |
| CCCTTCGGTACGGCTTCTCA+TGG | - | chr1.3:18953291-18953310 | None:intergenic | 60.0% | |
| GATGGCACTGTCTGGCGTCT+GGG | + | chr1.3:18953098-18953117 | MS.gene061677:CDS | 60.0% | |
| GCCATGAGAAGCCGTACCGA+AGG | + | chr1.3:18953287-18953306 | MS.gene061677:CDS | 60.0% | |
| TGATGGCACTGTCTGGCGTC+TGG | + | chr1.3:18953097-18953116 | MS.gene061677:CDS | 60.0% | |
| TGTCAGTGTAGCGGCGGAGT+TGG | - | chr1.3:18953815-18953834 | None:intergenic | 60.0% | |
| !! | CTGACACGGTGCTGCAAGTG+AGG | - | chr1.3:18954587-18954606 | None:intergenic | 60.0% |
| CGCCGCTACACTGACACGTG+TGG | + | chr1.3:18953819-18953838 | MS.gene061677:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 18951200 | 18954631 | 18951200 | ID=MS.gene061677 |
| chr1.3 | mRNA | 18951200 | 18954631 | 18951200 | ID=MS.gene061677.t1;Parent=MS.gene061677 |
| chr1.3 | exon | 18951200 | 18951262 | 18951200 | ID=MS.gene061677.t1.exon1;Parent=MS.gene061677.t1 |
| chr1.3 | CDS | 18951200 | 18951262 | 18951200 | ID=cds.MS.gene061677.t1;Parent=MS.gene061677.t1 |
| chr1.3 | exon | 18953029 | 18953710 | 18953029 | ID=MS.gene061677.t1.exon2;Parent=MS.gene061677.t1 |
| chr1.3 | CDS | 18953029 | 18953710 | 18953029 | ID=cds.MS.gene061677.t1;Parent=MS.gene061677.t1 |
| chr1.3 | exon | 18953984 | 18954180 | 18953984 | ID=MS.gene061677.t1.exon3;Parent=MS.gene061677.t1 |
| chr1.3 | CDS | 18953984 | 18954180 | 18953984 | ID=cds.MS.gene061677.t1;Parent=MS.gene061677.t1 |
| chr1.3 | exon | 18954221 | 18954631 | 18954221 | ID=MS.gene061677.t1.exon4;Parent=MS.gene061677.t1 |
| chr1.3 | CDS | 18954221 | 18954631 | 18954221 | ID=cds.MS.gene061677.t1;Parent=MS.gene061677.t1 |
| Gene Sequence |
| Protein sequence |
