AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050163


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050163.t1 MTR_5g013300 88.034 234 20 3 1 231 1 229 5.59e-147 409
MS.gene050163.t1 MTR_3g058620 49.640 139 66 1 90 224 77 215 8.78e-40 136
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050163.t1 AT4G17560 68.421 171 40 3 62 231 68 225 1.73e-69 213
MS.gene050163.t1 AT5G47190 58.333 216 69 3 31 231 20 229 1.08e-68 211
MS.gene050163.t1 AT4G11630 54.286 105 48 0 120 224 115 219 1.80e-37 130
MS.gene050163.t1 AT5G11750 54.286 105 48 0 120 224 119 223 2.85e-37 130
MS.gene050163.t1 AT5G11750 52.830 106 50 0 119 224 142 247 3.49e-36 128
MS.gene050163.t1 AT1G24240 52.381 105 50 0 120 224 112 216 2.64e-29 109

Find 68 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGACAATACCTTTATAAA+TGG 0.225579 5.3:-6346550 None:intergenic
CTTCTTCGACCTCAATTTCA+TGG 0.303030 5.3:+6345101 MS.gene050163:CDS
AACTGAAGGAGAACAGGTTT+TGG 0.311686 5.3:+6345246 MS.gene050163:CDS
GTCCTACTTGCAGGAAGTTC+CGG 0.324320 5.3:+6346509 MS.gene050163:intron
GGCTTCCCAAGTATTTCTTC+AGG 0.325939 5.3:+6344859 MS.gene050163:CDS
GTAACTTACCCTTCATTTCC+AGG 0.329154 5.3:+6345077 MS.gene050163:CDS
TGTTAAGCTTGGTGATGTTA+TGG 0.331706 5.3:+6345315 MS.gene050163:CDS
TCATTTGAAAGTGGAGAATC+TGG 0.340991 5.3:-6347559 None:intergenic
CGTAGGTTATCCATTTATAA+AGG 0.341243 5.3:+6346540 MS.gene050163:CDS
ATTTGAAACAGCCTCGGAAT+TGG 0.345574 5.3:-6345176 None:intergenic
GTCTTGCCTGCCTGACCTTT+CGG 0.348430 5.3:-6347512 None:intergenic
ACTTTGATTTCTTTGATGTT+TGG 0.358077 5.3:-6347480 None:intergenic
GAAGAGAAACCTAGCTTTGT+TGG 0.359069 5.3:-6345025 None:intergenic
GTTAAGCTTGGTGATGTTAT+GGG 0.359187 5.3:+6345316 MS.gene050163:CDS
TCAGCATTATCCGAAGCTTC+AGG 0.367212 5.3:-6345211 None:intergenic
TTTGTTGGAGGACATTGATT+AGG 0.374475 5.3:-6345010 None:intergenic
GGATAATGCTGATGAAGTTT+CGG 0.394551 5.3:+6345222 MS.gene050163:CDS
TTCGGAAACTGAAGGAGAAC+AGG 0.400877 5.3:+6345240 MS.gene050163:CDS
CGCGTCCGAAGAATTATTGC+CGG 0.419736 5.3:+6346606 MS.gene050163:CDS
CCACAATATCTCCAGTCCTT+AGG 0.437951 5.3:-6346378 None:intergenic
TTGTGCAGATATTGCATAAG+AGG 0.442143 5.3:+6346317 MS.gene050163:intron
GATAACCTACGTTTGTTCTC+CGG 0.447583 5.3:-6346528 None:intergenic
CGAAGAATTATTGCCGGCAC+AGG 0.476448 5.3:+6346612 MS.gene050163:CDS
CGAAGAAGCCCTGGAAATGA+AGG 0.478400 5.3:-6345086 None:intergenic
TGATGAAAATCCTGAAGCTT+CGG 0.493188 5.3:+6345201 MS.gene050163:CDS
ACGAGTTTGTCTAGGCGGCT+TGG 0.497233 5.3:-6345293 None:intergenic
CTGTGCCGGCAATAATTCTT+CGG 0.499754 5.3:-6346611 None:intergenic
TGGTAAAGCACCGAAAGGTC+AGG 0.504557 5.3:+6347502 MS.gene050163:CDS
CAATGTCCTCCAACAAAGCT+AGG 0.507926 5.3:+6345016 MS.gene050163:CDS
TTTGGATTCTGCATCTGAGG+TGG 0.512535 5.3:+6345264 MS.gene050163:CDS
ATATCTCCAGTCCTTAGGTC+AGG 0.513987 5.3:-6346373 None:intergenic
CCTAAGGACTGGAGATATTG+TGG 0.515943 5.3:+6346378 MS.gene050163:CDS
GACTATCTCAACCCCTGTGC+CGG 0.526794 5.3:-6346625 None:intergenic
ATCAACATTTGAAACAGCCT+CGG 0.532181 5.3:-6345182 None:intergenic
GGATTCTGCATCTGAGGTGG+AGG 0.532596 5.3:+6345267 MS.gene050163:CDS
GTGACCTTATCATTTGAAAG+TGG 0.534354 5.3:-6347568 None:intergenic
ACGAGAAGCGATGGTGGAAG+CGG 0.542669 5.3:-6345056 None:intergenic
TAACTTACCCTTCATTTCCA+GGG 0.543085 5.3:+6345078 MS.gene050163:CDS
AGATATTGTGGAAATCAGAT+TGG 0.543994 5.3:+6346390 MS.gene050163:CDS
TTAAGCTTGGTGATGTTATG+GGG 0.548890 5.3:+6345317 MS.gene050163:CDS
GTCATATCAAGACAAAATGC+TGG 0.549163 5.3:+6346567 MS.gene050163:CDS
AATTGAGGTCGAAGAAGCCC+TGG 0.553413 5.3:-6345095 None:intergenic
ATTACAGCGCCATGAAATTG+AGG 0.558367 5.3:-6345110 None:intergenic
GAGAAACCTAGCTTTGTTGG+AGG 0.558664 5.3:-6345022 None:intergenic
ACCACTCCTGACCTAAGGAC+TGG 0.565262 5.3:+6346367 MS.gene050163:CDS
TCAGCTCTCACAATAAAACT+AGG 0.565579 5.3:-6345151 None:intergenic
GAAGAATTATTGCCGGCACA+GGG 0.573107 5.3:+6346613 MS.gene050163:CDS
AGACAAACTCGTGTTAAGCT+TGG 0.574922 5.3:+6345304 MS.gene050163:CDS
TCCAGTCCTTAGGTCAGGAG+TGG 0.583721 5.3:-6346368 None:intergenic
AGCTTAACACGAGTTTGTCT+AGG 0.586483 5.3:-6345301 None:intergenic
TGAGGACCACTCCTGACCTA+AGG 0.591875 5.3:+6346362 MS.gene050163:CDS
CATTTGAAAGTGGAGAATCT+GGG 0.592345 5.3:-6347558 None:intergenic
TGTGCAGATATTGCATAAGA+GGG 0.596182 5.3:+6346318 MS.gene050163:intron
GGGTAAGTTACGAGAAGCGA+TGG 0.599796 5.3:-6345065 None:intergenic
AAACTAGGTTTAGCAATGAG+AGG 0.610020 5.3:-6345136 None:intergenic
AAAGCACCGAAAGGTCAGGC+AGG 0.614155 5.3:+6347506 MS.gene050163:CDS
GATGAAGTTTCGGAAACTGA+AGG 0.614399 5.3:+6345232 MS.gene050163:CDS
GAGAGCTGATTCCAATTCCG+AGG 0.627170 5.3:+6345165 MS.gene050163:CDS
TAAGTTACGAGAAGCGATGG+TGG 0.627813 5.3:-6345062 None:intergenic
CTAGGTTTAGCAATGAGAGG+AGG 0.642127 5.3:-6345133 None:intergenic
TTAACACGAGTTTGTCTAGG+CGG 0.648787 5.3:-6345298 None:intergenic
AAACATCAAAGAAATCAAAG+TGG 0.650615 5.3:+6347482 MS.gene050163:CDS
CAAAGTGGTAAAGCACCGAA+AGG 0.655009 5.3:+6347497 MS.gene050163:CDS
AAGAATTATTGCCGGCACAG+GGG 0.659206 5.3:+6346614 MS.gene050163:CDS
TTGCAGCTTCAGATGAAGTG+AGG 0.663436 5.3:+6346344 MS.gene050163:CDS
TAAGCTTGGTGATGTTATGG+GGG 0.663709 5.3:+6345318 MS.gene050163:CDS
GAAGAAGCCCTGGAAATGAA+GGG 0.680632 5.3:-6345085 None:intergenic
AAGTTCCGGAGAACAAACGT+AGG 0.780898 5.3:+6346523 MS.gene050163:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTTATGAAATATGATATTA+AGG + chr5.3:6347286-6347305 MS.gene050163:intron 15.0%
!! TATGCTTATAATAGAAAATT+TGG + chr5.3:6345629-6345648 MS.gene050163:intron 15.0%
!!! CTATTTCATTTTCATATATT+TGG - chr5.3:6346894-6346913 None:intergenic 15.0%
!! AATATTACTTACACATGAAT+AGG + chr5.3:6345673-6345692 MS.gene050163:intron 20.0%
!! ACTAATCCCTATTAAATTAT+TGG - chr5.3:6346686-6346705 None:intergenic 20.0%
!! AGTAGTCTATATATTAACAT+TGG - chr5.3:6345572-6345591 None:intergenic 20.0%
!! ATAAGATGATATGATTTATG+TGG + chr5.3:6346474-6346493 MS.gene050163:intron 20.0%
!! CAAAAATCCAAATTCTAATA+TGG - chr5.3:6345974-6345993 None:intergenic 20.0%
!! CAAAAGAAGAAAAAAAATGA+GGG + chr5.3:6346253-6346272 MS.gene050163:intron 20.0%
!! CAAATTAATATGTTGAAGAA+GGG + chr5.3:6346449-6346468 MS.gene050163:intron 20.0%
!! CTAATCCCTATTAAATTATT+GGG - chr5.3:6346685-6346704 None:intergenic 20.0%
!! TATGACAATACCTTTATAAA+TGG - chr5.3:6346553-6346572 None:intergenic 20.0%
!! TCAAATTAATATGTTGAAGA+AGG + chr5.3:6346448-6346467 MS.gene050163:intron 20.0%
!! TTTAAACAACTTCGAATAAT+AGG - chr5.3:6345913-6345932 None:intergenic 20.0%
!! TTTCTCCCAATAATTTAATA+GGG + chr5.3:6346677-6346696 MS.gene050163:intron 20.0%
!!! AAGTATTTGTTACAATGAAT+TGG - chr5.3:6344921-6344940 None:intergenic 20.0%
!!! CATATTAGAATTTGGATTTT+TGG + chr5.3:6345972-6345991 MS.gene050163:intron 20.0%
!!! CTCATTTTTTTTCTTCTTTT+GGG - chr5.3:6346254-6346273 None:intergenic 20.0%
!!! TTATAAAATGAAGCGTTTAT+CGG + chr5.3:6347399-6347418 MS.gene050163:intron 20.0%
! AAAAAACCTGAAGAAATACT+TGG - chr5.3:6344868-6344887 None:intergenic 25.0%
! AAAAACCTGAAGAAATACTT+GGG - chr5.3:6344867-6344886 None:intergenic 25.0%
! AAACATCAAAGAAATCAAAG+TGG + chr5.3:6347482-6347501 MS.gene050163:CDS 25.0%
! ACCAATTTCTTAACAATGAA+AGG - chr5.3:6347038-6347057 None:intergenic 25.0%
! ACCTTTCATTGTTAAGAAAT+TGG + chr5.3:6347034-6347053 MS.gene050163:intron 25.0%
! ACTACTAGTAAATGTTCATT+AGG + chr5.3:6345589-6345608 MS.gene050163:intron 25.0%
! ATATCCTTGATCTTACAAAT+TGG + chr5.3:6347093-6347112 MS.gene050163:intron 25.0%
! ATTTCTATTTGAAGGTTACA+TGG + chr5.3:6346151-6346170 MS.gene050163:intron 25.0%
! CCAAAAGAAGAAAAAAAATG+AGG + chr5.3:6346252-6346271 MS.gene050163:intron 25.0%
! CTATTAAATTATTGGGAGAA+AGG - chr5.3:6346678-6346697 None:intergenic 25.0%
! CTTTCTCCCAATAATTTAAT+AGG + chr5.3:6346676-6346695 MS.gene050163:intron 25.0%
! GATATCATTAAACAACAACT+AGG - chr5.3:6347200-6347219 None:intergenic 25.0%
! TACAACACATTTAATGTGTT+GGG - chr5.3:6346050-6346069 None:intergenic 25.0%
! TCAAATAGAAATTTGATCCA+AGG - chr5.3:6346143-6346162 None:intergenic 25.0%
! TGGATCAAATTTCTATTTGA+AGG + chr5.3:6346143-6346162 MS.gene050163:intron 25.0%
! TTAATAACAGTATAGAGTCA+TGG - chr5.3:6345357-6345376 None:intergenic 25.0%
!! AAGGATATTTTCATCTGTAT+TGG - chr5.3:6347081-6347100 None:intergenic 25.0%
!! ACTTTGATTTCTTTGATGTT+TGG - chr5.3:6347483-6347502 None:intergenic 25.0%
!! ATTTTATAAGGCAAGGTAAT+GGG - chr5.3:6347388-6347407 None:intergenic 25.0%
!! CATTGTTAAGAAATTGGTTT+AGG + chr5.3:6347040-6347059 MS.gene050163:intron 25.0%
!! GATAAACGCTTCATTTTATA+AGG - chr5.3:6347400-6347419 None:intergenic 25.0%
!!! CCTCATTTTTTTTCTTCTTT+TGG - chr5.3:6346255-6346274 None:intergenic 25.0%
AAATGAAATCTCATGTGTGT+TGG - chr5.3:6345451-6345470 None:intergenic 30.0%
ACGTAATAATGTGATCCATT+TGG - chr5.3:6347342-6347361 None:intergenic 30.0%
AGACCTTATAAGCACTAAAA+AGG + chr5.3:6346007-6346026 MS.gene050163:intron 30.0%
AGATATTGTGGAAATCAGAT+TGG + chr5.3:6346390-6346409 MS.gene050163:CDS 30.0%
ATCTTCCAACATATTTACCT+TGG + chr5.3:6346123-6346142 MS.gene050163:intron 30.0%
ATTACTTACACATGAATAGG+AGG + chr5.3:6345676-6345695 MS.gene050163:intron 30.0%
ATTCAAGCAAATTAGCCAAA+TGG + chr5.3:6347324-6347343 MS.gene050163:intron 30.0%
CATTTCATTTGCCATCATTT+CGG - chr5.3:6346076-6346095 None:intergenic 30.0%
CGTAGGTTATCCATTTATAA+AGG + chr5.3:6346540-6346559 MS.gene050163:CDS 30.0%
CTACAACACATTTAATGTGT+TGG - chr5.3:6346051-6346070 None:intergenic 30.0%
GCTCATACCATATTAGAATT+TGG + chr5.3:6345964-6345983 MS.gene050163:intron 30.0%
GTTGGGTTTATTCATCAATA+TGG - chr5.3:6346033-6346052 None:intergenic 30.0%
TATGAGCTCTCATTTAACAA+AGG - chr5.3:6345951-6345970 None:intergenic 30.0%
TGGATAATAATGAGATGAGA+GGG - chr5.3:6344901-6344920 None:intergenic 30.0%
TTGATCCAAGGTAAATATGT+TGG - chr5.3:6346131-6346150 None:intergenic 30.0%
TTGGATAATAATGAGATGAG+AGG - chr5.3:6344902-6344921 None:intergenic 30.0%
! CATTTTATAAGGCAAGGTAA+TGG - chr5.3:6347389-6347408 None:intergenic 30.0%
!! TTTTTAGTGCTTATAAGGTC+TGG - chr5.3:6346008-6346027 None:intergenic 30.0%
!!! TTTATTTTTGTCCTACTTGC+AGG + chr5.3:6346500-6346519 MS.gene050163:intron 30.0%
AAACTAGGTTTAGCAATGAG+AGG - chr5.3:6345139-6345158 None:intergenic 35.0%
AAACTGGAAGATGGGAATTT+GGG + chr5.3:6346799-6346818 MS.gene050163:intron 35.0%
AACAACAACTAGGACTGAAA+AGG - chr5.3:6347190-6347209 None:intergenic 35.0%
AATGTTGTGTTTACGAGGAT+TGG - chr5.3:6345748-6345767 None:intergenic 35.0%
ACCTTCTACATAGAATCCAA+AGG - chr5.3:6345807-6345826 None:intergenic 35.0%
ATAGCAATGTTATGTCTCCT+AGG - chr5.3:6345777-6345796 None:intergenic 35.0%
ATCCTAATCACAACAGCAAT+TGG - chr5.3:6346768-6346787 None:intergenic 35.0%
CATCCAAAAGAAACATTCAC+CGG - chr5.3:6346722-6346741 None:intergenic 35.0%
CATTTGAAAGTGGAGAATCT+GGG - chr5.3:6347561-6347580 None:intergenic 35.0%
CCTTCTACATAGAATCCAAA+GGG - chr5.3:6345806-6345825 None:intergenic 35.0%
CGAAATGATGGCAAATGAAA+TGG + chr5.3:6346074-6346093 MS.gene050163:intron 35.0%
GAGTCCAATTTGTAAGATCA+AGG - chr5.3:6347100-6347119 None:intergenic 35.0%
GGAATCATGTTAGTGTCAAT+AGG - chr5.3:6347367-6347386 None:intergenic 35.0%
GGATAATGCTGATGAAGTTT+CGG + chr5.3:6345222-6345241 MS.gene050163:CDS 35.0%
GGTCATCCAATGTCTTTAAA+GGG - chr5.3:6346873-6346892 None:intergenic 35.0%
GTCATATCAAGACAAAATGC+TGG + chr5.3:6346567-6346586 MS.gene050163:CDS 35.0%
GTTGGAAAGTCAAACAGAAA+GGG - chr5.3:6347155-6347174 None:intergenic 35.0%
TAACTTACCCTTCATTTCCA+GGG + chr5.3:6345078-6345097 MS.gene050163:CDS 35.0%
TCAGCTCTCACAATAAAACT+AGG - chr5.3:6345154-6345173 None:intergenic 35.0%
TCATTTGAAAGTGGAGAATC+TGG - chr5.3:6347562-6347581 None:intergenic 35.0%
TGATGAAAATCCTGAAGCTT+CGG + chr5.3:6345201-6345220 MS.gene050163:CDS 35.0%
TGGTCATCCAATGTCTTTAA+AGG - chr5.3:6346874-6346893 None:intergenic 35.0%
TGTGCAGATATTGCATAAGA+GGG + chr5.3:6346318-6346337 MS.gene050163:intron 35.0%
TGTTGGAAAGTCAAACAGAA+AGG - chr5.3:6347156-6347175 None:intergenic 35.0%
TGTTGTGATTAGGATAGAAG+AGG + chr5.3:6346773-6346792 MS.gene050163:intron 35.0%
TTATAAGGTCTGGATGCATT+TGG - chr5.3:6345998-6346017 None:intergenic 35.0%
TTGTGCAGATATTGCATAAG+AGG + chr5.3:6346317-6346336 MS.gene050163:intron 35.0%
! ACGCTTCATTTTATAAGGCA+AGG - chr5.3:6347395-6347414 None:intergenic 35.0%
! ATCAACATTTGAAACAGCCT+CGG - chr5.3:6345185-6345204 None:intergenic 35.0%
! ATCCAATTGCTGTTGTGATT+AGG + chr5.3:6346763-6346782 MS.gene050163:intron 35.0%
! ATTAGTACTGTCATTTGCAC+CGG + chr5.3:6346700-6346719 MS.gene050163:intron 35.0%
! CTCTTTCCTCTAAAAGAATG+AGG + chr5.3:6347219-6347238 MS.gene050163:intron 35.0%
! TCTCAACCTCATTCTTTTAG+AGG - chr5.3:6347228-6347247 None:intergenic 35.0%
! TGAAGTCCCTTTAAAGACAT+TGG + chr5.3:6346864-6346883 MS.gene050163:intron 35.0%
! TGTTTGACTTTCCAACACTT+TGG + chr5.3:6347159-6347178 MS.gene050163:intron 35.0%
! TTTGTTGGAGGACATTGATT+AGG - chr5.3:6345013-6345032 None:intergenic 35.0%
!! AAAAGGCATTTCCAAAGTGT+TGG - chr5.3:6347173-6347192 None:intergenic 35.0%
!! CCATTTGCTTTTGACACTTT+CGG - chr5.3:6345853-6345872 None:intergenic 35.0%
!! GCAAAGTTGCAGATTTTAAC+AGG - chr5.3:6347014-6347033 None:intergenic 35.0%
!! GTTAAGCTTGGTGATGTTAT+GGG + chr5.3:6345316-6345335 MS.gene050163:CDS 35.0%
!! TCAATGAACTCTGAAATGCA+TGG + chr5.3:6346288-6346307 MS.gene050163:intron 35.0%
!! TGGCCTTTTTAGTGCTTATA+AGG - chr5.3:6346013-6346032 None:intergenic 35.0%
!! TGTTAAGCTTGGTGATGTTA+TGG + chr5.3:6345315-6345334 MS.gene050163:CDS 35.0%
!! TTAAGCTTGGTGATGTTATG+GGG + chr5.3:6345317-6345336 MS.gene050163:CDS 35.0%
!!! ATTGGTTTTGCCATCCAAAA+AGG - chr5.3:6345730-6345749 None:intergenic 35.0%
AACACAACATTCATGGACCT+AGG + chr5.3:6345757-6345776 MS.gene050163:intron 40.0%
AAGAGGTTCAAACTGGAAGA+TGG + chr5.3:6346790-6346809 MS.gene050163:intron 40.0%
ACCAATTCATCTCTGTAAGG+AGG - chr5.3:6345889-6345908 None:intergenic 40.0%
AGACAAACTCGTGTTAAGCT+TGG + chr5.3:6345304-6345323 MS.gene050163:CDS 40.0%
AGAGGTTCAAACTGGAAGAT+GGG + chr5.3:6346791-6346810 MS.gene050163:intron 40.0%
AGCTTAACACGAGTTTGTCT+AGG - chr5.3:6345304-6345323 None:intergenic 40.0%
AGGATAGAAGAGGTTCAAAC+TGG + chr5.3:6346783-6346802 MS.gene050163:intron 40.0%
ATTACAGCGCCATGAAATTG+AGG - chr5.3:6345113-6345132 None:intergenic 40.0%
CAAACTGGAAGATGGGAATT+TGG + chr5.3:6346798-6346817 MS.gene050163:intron 40.0%
CAAATGAAATGGCCTAAAGG+TGG + chr5.3:6346085-6346104 MS.gene050163:intron 40.0%
CACAACAGCAATTGGATACA+TGG - chr5.3:6346760-6346779 None:intergenic 40.0%
CATTGCTATGCATAACCCTT+TGG + chr5.3:6345788-6345807 MS.gene050163:intron 40.0%
CCATGAATGTTGTGTTTACG+AGG - chr5.3:6345753-6345772 None:intergenic 40.0%
CCCTTTGGATTCTATGTAGA+AGG + chr5.3:6345803-6345822 MS.gene050163:intron 40.0%
CCTCGTAAACACAACATTCA+TGG + chr5.3:6345750-6345769 MS.gene050163:intron 40.0%
CTTCTTCGACCTCAATTTCA+TGG + chr5.3:6345101-6345120 MS.gene050163:CDS 40.0%
GATAACCTACGTTTGTTCTC+CGG - chr5.3:6346531-6346550 None:intergenic 40.0%
GATGAAGTTTCGGAAACTGA+AGG + chr5.3:6345232-6345251 MS.gene050163:CDS 40.0%
GGTACCAATTCATCTCTGTA+AGG - chr5.3:6345892-6345911 None:intergenic 40.0%
GTAACTTACCCTTCATTTCC+AGG + chr5.3:6345077-6345096 MS.gene050163:CDS 40.0%
TAACACAAAATGCAGCAGCT+TGG - chr5.3:6346956-6346975 None:intergenic 40.0%
TCCTCCTTACAGAGATGAAT+TGG + chr5.3:6345885-6345904 MS.gene050163:intron 40.0%
TGGAAGATCTGCCTTAATTG+CGG - chr5.3:6346111-6346130 None:intergenic 40.0%
TGGCAAATGAAATGGCCTAA+AGG + chr5.3:6346082-6346101 MS.gene050163:intron 40.0%
TTAACACGAGTTTGTCTAGG+CGG - chr5.3:6345301-6345320 None:intergenic 40.0%
! AACTGAAGGAGAACAGGTTT+TGG + chr5.3:6345246-6345265 MS.gene050163:CDS 40.0%
! ATTTGAAACAGCCTCGGAAT+TGG - chr5.3:6345179-6345198 None:intergenic 40.0%
!! AAGAGTGAGGGTACTTACAT+TGG - chr5.3:6346654-6346673 None:intergenic 40.0%
!! AGAGTGAGGGTACTTACATT+GGG - chr5.3:6346653-6346672 None:intergenic 40.0%
!! CAGATTTTAACAGGCAACCA+TGG - chr5.3:6347005-6347024 None:intergenic 40.0%
!! CCGAAAGTGTCAAAAGCAAA+TGG + chr5.3:6345850-6345869 MS.gene050163:intron 40.0%
!! GAAGAGAAACCTAGCTTTGT+TGG - chr5.3:6345028-6345047 None:intergenic 40.0%
!! TAAGCTTGGTGATGTTATGG+GGG + chr5.3:6345318-6345337 MS.gene050163:CDS 40.0%
AAGAATTATTGCCGGCACAG+GGG + chr5.3:6346614-6346633 MS.gene050163:CDS 45.0%
AAGTTCCGGAGAACAAACGT+AGG + chr5.3:6346523-6346542 MS.gene050163:CDS 45.0%
ACACAAACACGAACACCAGA+CGG - chr5.3:6345502-6345521 None:intergenic 45.0%
ACACATGAATAGGAGGCAAG+CGG + chr5.3:6345683-6345702 MS.gene050163:intron 45.0%
ATATCTCCAGTCCTTAGGTC+AGG - chr5.3:6346376-6346395 None:intergenic 45.0%
ATTGGACTCACTCACTCCAT+TGG + chr5.3:6347111-6347130 MS.gene050163:intron 45.0%
CAATGTCCTCCAACAAAGCT+AGG + chr5.3:6345016-6345035 MS.gene050163:CDS 45.0%
CATGGTACCAGTACTAGCAT+AGG - chr5.3:6346987-6347006 None:intergenic 45.0%
CCACAATATCTCCAGTCCTT+AGG - chr5.3:6346381-6346400 None:intergenic 45.0%
CCTAAGGACTGGAGATATTG+TGG + chr5.3:6346378-6346397 MS.gene050163:CDS 45.0%
CTAGGTTTAGCAATGAGAGG+AGG - chr5.3:6345136-6345155 None:intergenic 45.0%
GAAGAAGCCCTGGAAATGAA+GGG - chr5.3:6345088-6345107 None:intergenic 45.0%
GAAGAATTATTGCCGGCACA+GGG + chr5.3:6346613-6346632 MS.gene050163:CDS 45.0%
GCACGATTACAACTCTCCAA+TGG - chr5.3:6347130-6347149 None:intergenic 45.0%
GGCTTCCCAAGTATTTCTTC+AGG + chr5.3:6344859-6344878 MS.gene050163:CDS 45.0%
TAAGTTACGAGAAGCGATGG+TGG - chr5.3:6345065-6345084 None:intergenic 45.0%
TCAGCATTATCCGAAGCTTC+AGG - chr5.3:6345214-6345233 None:intergenic 45.0%
TGCCATCCAAAAAGGTCTAG+CGG - chr5.3:6345722-6345741 None:intergenic 45.0%
TGTCATGCCTATGCTAGTAC+TGG + chr5.3:6346977-6346996 MS.gene050163:intron 45.0%
TTCGGAAACTGAAGGAGAAC+AGG + chr5.3:6345240-6345259 MS.gene050163:CDS 45.0%
TTGCAGCTTCAGATGAAGTG+AGG + chr5.3:6346344-6346363 MS.gene050163:CDS 45.0%
TTTGGATTCTGCATCTGAGG+TGG + chr5.3:6345264-6345283 MS.gene050163:CDS 45.0%
! ATACATGGTGATGCACAGCA+AGG - chr5.3:6346745-6346764 None:intergenic 45.0%
! CTGTGCCGGCAATAATTCTT+CGG - chr5.3:6346614-6346633 None:intergenic 45.0%
! GCACTGACACTTCAGATCAA+AGG + chr5.3:6345420-6345439 MS.gene050163:intron 45.0%
!! CAAAGTGGTAAAGCACCGAA+AGG + chr5.3:6347497-6347516 MS.gene050163:CDS 45.0%
!! CTATGCTAGTACTGGTACCA+TGG + chr5.3:6346985-6347004 MS.gene050163:intron 45.0%
!! GAGAAACCTAGCTTTGTTGG+AGG - chr5.3:6345025-6345044 None:intergenic 45.0%
!! GCACCGGTGAATGTTTCTTT+TGG + chr5.3:6346716-6346735 MS.gene050163:intron 45.0%
!!! GGTTTTGGATTCTGCATCTG+AGG + chr5.3:6345261-6345280 MS.gene050163:CDS 45.0%
AATTGAGGTCGAAGAAGCCC+TGG - chr5.3:6345098-6345117 None:intergenic 50.0%
CACATGAATAGGAGGCAAGC+GGG + chr5.3:6345684-6345703 MS.gene050163:intron 50.0%
CCTAAAGGTGGCCGCAATTA+AGG + chr5.3:6346097-6346116 MS.gene050163:intron 50.0%
CCTTAATTGCGGCCACCTTT+AGG - chr5.3:6346100-6346119 None:intergenic 50.0%
CGAAGAAGCCCTGGAAATGA+AGG - chr5.3:6345089-6345108 None:intergenic 50.0%
CGAAGAATTATTGCCGGCAC+AGG + chr5.3:6346612-6346631 MS.gene050163:CDS 50.0%
CGCGTCCGAAGAATTATTGC+CGG + chr5.3:6346606-6346625 MS.gene050163:CDS 50.0%
GGGTAAGTTACGAGAAGCGA+TGG - chr5.3:6345068-6345087 None:intergenic 50.0%
GGTCAACATCCTCTGATGCT+AGG + chr5.3:6345824-6345843 MS.gene050163:intron 50.0%
GTCCTACTTGCAGGAAGTTC+CGG + chr5.3:6346509-6346528 MS.gene050163:intron 50.0%
TGGGAGAAAGGCAAGAGTGA+GGG - chr5.3:6346666-6346685 None:intergenic 50.0%
TTGGGAGAAAGGCAAGAGTG+AGG - chr5.3:6346667-6346686 None:intergenic 50.0%
TTTCGGCTTCCTAGCATCAG+AGG - chr5.3:6345836-6345855 None:intergenic 50.0%
! GAGAGCTGATTCCAATTCCG+AGG + chr5.3:6345165-6345184 MS.gene050163:CDS 50.0%
! GTGTTGTAGCGCCGAAATGA+TGG + chr5.3:6346062-6346081 MS.gene050163:intron 50.0%
!! TGGTAAAGCACCGAAAGGTC+AGG + chr5.3:6347502-6347521 MS.gene050163:CDS 50.0%
ACCACTCCTGACCTAAGGAC+TGG + chr5.3:6346367-6346386 MS.gene050163:CDS 55.0%
ACGAGTTTGTCTAGGCGGCT+TGG - chr5.3:6345296-6345315 None:intergenic 55.0%
CTCCGGAACTTCCTGCAAGT+AGG - chr5.3:6346514-6346533 None:intergenic 55.0%
GACTATCTCAACCCCTGTGC+CGG - chr5.3:6346628-6346647 None:intergenic 55.0%
GTCTTGCCTGCCTGACCTTT+CGG - chr5.3:6347515-6347534 None:intergenic 55.0%
TCCAGTCCTTAGGTCAGGAG+TGG - chr5.3:6346371-6346390 None:intergenic 55.0%
TGAGGACCACTCCTGACCTA+AGG + chr5.3:6346362-6346381 MS.gene050163:CDS 55.0%
! CGCCGCTAGACCTTTTTGGA+TGG + chr5.3:6345717-6345736 MS.gene050163:intron 55.0%
! GGATTCTGCATCTGAGGTGG+AGG + chr5.3:6345267-6345286 MS.gene050163:CDS 55.0%
!! AAAGCACCGAAAGGTCAGGC+AGG + chr5.3:6347506-6347525 MS.gene050163:CDS 55.0%
!! ACGAGAAGCGATGGTGGAAG+CGG - chr5.3:6345059-6345078 None:intergenic 55.0%
CGAGAGTTGTCGTGTCCGTC+TGG + chr5.3:6345484-6345503 MS.gene050163:intron 60.0%
! GCTGCGCCGCTAGACCTTTT+TGG + chr5.3:6345713-6345732 MS.gene050163:intron 60.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 6344857 6347581 6344857 ID=MS.gene050163
chr5.3 mRNA 6344857 6347581 6344857 ID=MS.gene050163.t1;Parent=MS.gene050163
chr5.3 exon 6344857 6344880 6344857 ID=MS.gene050163.t1.exon1;Parent=MS.gene050163.t1
chr5.3 CDS 6344857 6344880 6344857 ID=cds.MS.gene050163.t1;Parent=MS.gene050163.t1
chr5.3 exon 6344998 6345339 6344998 ID=MS.gene050163.t1.exon2;Parent=MS.gene050163.t1
chr5.3 CDS 6344998 6345339 6344998 ID=cds.MS.gene050163.t1;Parent=MS.gene050163.t1
chr5.3 exon 6346325 6346411 6346325 ID=MS.gene050163.t1.exon3;Parent=MS.gene050163.t1
chr5.3 CDS 6346325 6346411 6346325 ID=cds.MS.gene050163.t1;Parent=MS.gene050163.t1
chr5.3 exon 6346522 6346655 6346522 ID=MS.gene050163.t1.exon4;Parent=MS.gene050163.t1
chr5.3 CDS 6346522 6346655 6346522 ID=cds.MS.gene050163.t1;Parent=MS.gene050163.t1
chr5.3 exon 6347473 6347581 6347473 ID=MS.gene050163.t1.exon5;Parent=MS.gene050163.t1
chr5.3 CDS 6347473 6347581 6347473 ID=cds.MS.gene050163.t1;Parent=MS.gene050163.t1
Gene Sequence

>MS.gene050163

ATGGCTTCCCAAGTATTTCTTCAGGTTTTTTTTTTTTCTTTCCCTCTCATCTCATTATTATCCAATTCATTGTAACAAATACTTATGATGCATTTTCAATTTCAATTTCACTACTTAACTCAAAAACTTTCATTTTAACAGACACTATTTGCTCCTAATCAATGTCCTCCAACAAAGCTAGGTTTCTCTTCTGCTTGCTCCGCTTCCACCATCGCTTCTCGTAACTTACCCTTCATTTCCAGGGCTTCTTCGACCTCAATTTCATGGCGCTGTAATCCTCCTCTCATTGCTAAACCTAGTTTTATTGTGAGAGCTGATTCCAATTCCGAGGCTGTTTCAAATGTTGATGAAAATCCTGAAGCTTCGGATAATGCTGATGAAGTTTCGGAAACTGAAGGAGAACAGGTTTTGGATTCTGCATCTGAGGTGGAGGAAGCCAAGCCGCCTAGACAAACTCGTGTTAAGCTTGGTGATGTTATGGGGGTAAGTTATTTCTTCCATGACTCTATACTGTTATTAATGATTAAGTTGAAATTTGAGTAATAAGTTTCTGAATGATATTAGCACTGACACTTCAGATCAAAGGCGTGTCCAACACACATGAGATTTCATTTTCTCAAATTATTACGAGAGTTGTCGTGTCCGTCTGGTGTTCGTGTTTGTGTTAGTGCTTCTTAGATGATATTCAGTTCAATGATACAAAGTATAAGCTCCAATGTTAATATATAGACTACTACTAGTAAATGTTCATTAGGTAATTTAGAAATACAATTATGCTTATAATAGAAAATTTGGAGATTATATATATTTACTATCAATATTACTTACACATGAATAGGAGGCAAGCGGGCAACAAGCTGCGCCGCTAGACCTTTTTGGATGGCAAAACCAATCCTCGTAAACACAACATTCATGGACCTAGGAGACATAACATTGCTATGCATAACCCTTTGGATTCTATGTAGAAGGTCAACATCCTCTGATGCTAGGAAGCCGAAAGTGTCAAAAGCAAATGGTATATTTAACAGTCCTCCTTACAGAGATGAATTGGTACCTATTATTCGAAGTTGTTTAAATCGCTTTCGAGAAGTCCTTTGTTAAATGAGAGCTCATACCATATTAGAATTTGGATTTTTGGCCAAATGCATCCAGACCTTATAAGCACTAAAAAGGCCATATTGATGAATAAACCCAACACATTAAATGTGTTGTAGCGCCGAAATGATGGCAAATGAAATGGCCTAAAGGTGGCCGCAATTAAGGCAGATCTTCCAACATATTTACCTTGGATCAAATTTCTATTTGAAGGTTACATGGCAAGTGTGAATGTGTTGATTATCGAGTTAGATTTTCACGTTCTGTATCTTCAACTAGACTAAGAAAATAAGTAGAAACCCAAAAGAAGAAAAAAAATGAGGGAGAAAGTAAAGATCAATGAACTCTGAAATGCATGGTATTGTTTGTGCAGATATTGCATAAGAGGGCAATTGCAGCTTCAGATGAAGTGAGGACCACTCCTGACCTAAGGACTGGAGATATTGTGGAAATCAGATTGGTATTGACATTGTTGTTTTTTTTTTCTTTCTTTCTTTCAAATTAATATGTTGAAGAAGGGTCATAAGATGATATGATTTATGTGGTCATTTATTTTTGTCCTACTTGCAGGAAGTTCCGGAGAACAAACGTAGGTTATCCATTTATAAAGGTATTGTCATATCAAGACAAAATGCTGGTATTCACACGACTATTCGCGTCCGAAGAATTATTGCCGGCACAGGGGTTGAGATAGTCTTCCCAATGTAAGTACCCTCACTCTTGCCTTTCTCCCAATAATTTAATAGGGATTAGTACTGTCATTTGCACCGGTGAATGTTTCTTTTGGATGCCTTGCTGTGCATCACCATGTATCCAATTGCTGTTGTGATTAGGATAGAAGAGGTTCAAACTGGAAGATGGGAATTTGGGACGAGTTCTTCATTTAACAGTTTTACTTGTGTTTAAGTGAATTGAAGTCCCTTTAAAGACATTGGATGACCAAATATATGAAAATGAAATAGAATAGTCGAATTATCATTTTCTATAATTGTAGATTACTTCCAAGCTGCTGCATTTTGTGTTATTGTCATGCCTATGCTAGTACTGGTACCATGGTTGCCTGTTAAAATCTGCAACTTTGCACCTTTCATTGTTAAGAAATTGGTTTAGGAGCACTGATCATATACCAATACAGATGAAAATATCCTTGATCTTACAAATTGGACTCACTCACTCCATTGGAGAGTTGTAATCGTGCAACCCTTTCTGTTTGACTTTCCAACACTTTGGAAATGCCTTTTCAGTCCTAGTTGTTGTTTAATGATATCTCTTTCCTCTAAAAGAATGAGGTTGAGATTAATCTTGTTTCAATGTGTTGTAACATGATAGTAATAGTTTATGAAATATGATATTAAGGATCTGAATTTTTTTTATTCAAGCAAATTAGCCAAATGGATCACATTATTACGTTACCTATTGACACTAACATGATTCCCATTACCTTGCCTTATAAAATGAAGCGTTTATCGGATTTTTCTTCTGAAATAACGTATGTTATGATGCTTATGTTTCATGTCACAGTTACTCACCAAACATCAAAGAAATCAAAGTGGTAAAGCACCGAAAGGTCAGGCAGGCAAGACTGTACTATCTAAAAGACAAGCTTCCCAGATTCTCCACTTTCAAATGA

Protein sequence

>MS.gene050163.t1

MASQVFLQTLFAPNQCPPTKLGFSSACSASTIASRNLPFISRASSTSISWRCNPPLIAKPSFIVRADSNSEAVSNVDENPEASDNADEVSETEGEQVLDSASEVEEAKPPRQTRVKLGDVMGILHKRAIAASDEVRTTPDLRTGDIVEIRLEVPENKRRLSIYKGIVISRQNAGIHTTIRVRRIIAGTGVEIVFPIYSPNIKEIKVVKHRKVRQARLYYLKDKLPRFSTFK