AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050165


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050165.t1 MTR_5g013300 85.427 199 21 3 1 196 1 194 6.79e-118 335
MS.gene050165.t1 MTR_3g058620 48.913 92 43 1 109 196 96 187 1.93e-23 94.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050165.t1 AT4G17560 62.500 136 37 3 62 196 68 190 9.21e-44 147
MS.gene050165.t1 AT5G47190 57.823 147 50 1 62 196 48 194 2.25e-42 143
MS.gene050165.t1 AT1G24240 48.718 78 40 0 119 196 111 188 8.17e-22 90.1
MS.gene050165.t1 AT4G11630 49.351 77 39 0 120 196 115 191 1.03e-21 89.7
MS.gene050165.t1 AT5G11750 49.351 77 39 0 120 196 119 195 1.38e-21 89.4
MS.gene050165.t1 AT5G11750 47.436 78 41 0 119 196 142 219 7.83e-21 88.2

Find 67 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACTGGAAGATGGGAATT+TGG 0.197875 5.3:-6363563 MS.gene050165:CDS
TATGACAATACCTTTATAAA+TGG 0.225579 5.3:+6363810 None:intergenic
CTTCTTCGACCTCAATTTCA+TGG 0.303030 5.3:-6365260 MS.gene050165:CDS
AACTGAAGGAGAACAGGTTT+TGG 0.311686 5.3:-6365115 MS.gene050165:CDS
GTCCTACTTGCAGGAAGTTC+CGG 0.324320 5.3:-6363851 MS.gene050165:intron
GGCTTCCCAAGTATTTCTTC+AGG 0.325939 5.3:-6365502 MS.gene050165:intron
GTAACTTACCCTTCATTTCC+AGG 0.329154 5.3:-6365284 MS.gene050165:CDS
TGTTAAGCTTGGTGATGTTA+TGG 0.331706 5.3:-6365046 MS.gene050165:CDS
CGTAGGTTATCCATTTATAA+AGG 0.341243 5.3:-6363820 MS.gene050165:CDS
ATTTGAAACAGCCTCGGAAT+TGG 0.345574 5.3:+6365185 None:intergenic
GAAGAGAAACCTAGCTTTGT+TGG 0.359069 5.3:+6365336 None:intergenic
GTTAAGCTTGGTGATGTTAT+GGG 0.359187 5.3:-6365045 MS.gene050165:CDS
TCAGCATTATCCGAAGCTTC+AGG 0.367212 5.3:+6365150 None:intergenic
TTTGTTGGAGGACATTGATT+AGG 0.374475 5.3:+6365351 None:intergenic
GGTCATCCAATGTCTTTAAA+GGG 0.384759 5.3:+6363490 None:intergenic
AAACTGGAAGATGGGAATTT+GGG 0.388500 5.3:-6363562 MS.gene050165:CDS
GGATAATGCTGATGAAGTTT+CGG 0.394551 5.3:-6365139 MS.gene050165:CDS
TTCGGAAACTGAAGGAGAAC+AGG 0.400877 5.3:-6365121 MS.gene050165:CDS
CGCGTCCGAAGAATTATTGC+CGG 0.419736 5.3:-6363754 MS.gene050165:CDS
CCACAATATCTCCAGTCCTT+AGG 0.437951 5.3:+6363982 None:intergenic
TTGTGCAGATATTGCATAAG+AGG 0.442143 5.3:-6364043 MS.gene050165:intron
GATAACCTACGTTTGTTCTC+CGG 0.447583 5.3:+6363832 None:intergenic
AAGAGGTTCAAACTGGAAGA+TGG 0.470246 5.3:-6363571 MS.gene050165:CDS
AGGATAGAAGAGGTTCAAAC+TGG 0.476109 5.3:-6363578 MS.gene050165:CDS
CGAAGAATTATTGCCGGCAC+AGG 0.476448 5.3:-6363748 MS.gene050165:CDS
CGAAGAAGCCCTGGAAATGA+AGG 0.478400 5.3:+6365275 None:intergenic
TGATGAAAATCCTGAAGCTT+CGG 0.493188 5.3:-6365160 MS.gene050165:CDS
ACGAGTTTGTCTAGGCGGCT+TGG 0.497233 5.3:+6365068 None:intergenic
CTGTGCCGGCAATAATTCTT+CGG 0.499754 5.3:+6363749 None:intergenic
CAATGTCCTCCAACAAAGCT+AGG 0.507926 5.3:-6365345 MS.gene050165:CDS
TTTGGATTCTGCATCTGAGG+TGG 0.512535 5.3:-6365097 MS.gene050165:CDS
ATATCTCCAGTCCTTAGGTC+AGG 0.513987 5.3:+6363987 None:intergenic
CCTAAGGACTGGAGATATTG+TGG 0.515943 5.3:-6363982 MS.gene050165:CDS
GACTATCTCAACCCCTGTGC+CGG 0.526794 5.3:+6363735 None:intergenic
ATCAACATTTGAAACAGCCT+CGG 0.532181 5.3:+6365179 None:intergenic
GGATTCTGCATCTGAGGTGG+AGG 0.532596 5.3:-6365094 MS.gene050165:CDS
ACGAGAAGCGATGGTGGAAG+CGG 0.542669 5.3:+6365305 None:intergenic
TAACTTACCCTTCATTTCCA+GGG 0.543085 5.3:-6365283 MS.gene050165:CDS
AGAGGTTCAAACTGGAAGAT+GGG 0.543482 5.3:-6363570 MS.gene050165:CDS
AGATATTGTGGAAATCAGAT+TGG 0.543994 5.3:-6363970 MS.gene050165:intron
TTAAGCTTGGTGATGTTATG+GGG 0.548890 5.3:-6365044 MS.gene050165:CDS
GTCATATCAAGACAAAATGC+TGG 0.549163 5.3:-6363793 MS.gene050165:CDS
AATTGAGGTCGAAGAAGCCC+TGG 0.553413 5.3:+6365266 None:intergenic
ATTACAGCGCCATGAAATTG+AGG 0.558367 5.3:+6365251 None:intergenic
GAGAAACCTAGCTTTGTTGG+AGG 0.558664 5.3:+6365339 None:intergenic
ACCACTCCTGACCTAAGGAC+TGG 0.565262 5.3:-6363993 MS.gene050165:CDS
TCAGCTCTCACAATAAAACT+AGG 0.565579 5.3:+6365210 None:intergenic
GAAGAATTATTGCCGGCACA+GGG 0.573107 5.3:-6363747 MS.gene050165:CDS
AGACAAACTCGTGTTAAGCT+TGG 0.574922 5.3:-6365057 MS.gene050165:CDS
TCCAGTCCTTAGGTCAGGAG+TGG 0.583721 5.3:+6363992 None:intergenic
CTTCAATTCACTTAAACACA+AGG 0.584062 5.3:+6363514 None:intergenic
AGCTTAACACGAGTTTGTCT+AGG 0.586483 5.3:+6365060 None:intergenic
TGAGGACCACTCCTGACCTA+AGG 0.591875 5.3:-6363998 MS.gene050165:CDS
TGTGCAGATATTGCATAAGA+GGG 0.596182 5.3:-6364042 MS.gene050165:intron
GGGTAAGTTACGAGAAGCGA+TGG 0.599796 5.3:+6365296 None:intergenic
TGTTGTGATTAGGATAGAAG+AGG 0.604801 5.3:-6363588 MS.gene050165:intron
AAACTAGGTTTAGCAATGAG+AGG 0.610020 5.3:+6365225 None:intergenic
GATGAAGTTTCGGAAACTGA+AGG 0.614399 5.3:-6365129 MS.gene050165:CDS
GAGAGCTGATTCCAATTCCG+AGG 0.627170 5.3:-6365196 MS.gene050165:CDS
TAAGTTACGAGAAGCGATGG+TGG 0.627813 5.3:+6365299 None:intergenic
CTAGGTTTAGCAATGAGAGG+AGG 0.642127 5.3:+6365228 None:intergenic
TTAACACGAGTTTGTCTAGG+CGG 0.648787 5.3:+6365063 None:intergenic
AAGAATTATTGCCGGCACAG+GGG 0.659206 5.3:-6363746 MS.gene050165:CDS
TTGCAGCTTCAGATGAAGTG+AGG 0.663436 5.3:-6364016 MS.gene050165:CDS
TAAGCTTGGTGATGTTATGG+GGG 0.663709 5.3:-6365043 MS.gene050165:intron
GAAGAAGCCCTGGAAATGAA+GGG 0.680632 5.3:+6365276 None:intergenic
AAGTTCCGGAGAACAAACGT+AGG 0.780898 5.3:-6363837 MS.gene050165:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGCTTATAATAGAAAATT+TGG - chr5.3:6364278-6364297 MS.gene050165:intron 15.0%
!! AATATTACTTACACATGAAT+AGG - chr5.3:6364322-6364341 MS.gene050165:intron 20.0%
!! ACTAATCCCTATAAATTATT+GGG + chr5.3:6365334-6365353 None:intergenic 20.0%
!! AGTAGTCTATATATTAACAT+TGG + chr5.3:6364221-6364240 None:intergenic 20.0%
!! ATAAGATGATATGATTTATG+TGG - chr5.3:6365123-6365142 MS.gene050165:CDS 20.0%
!! CAAAAATCCAAATTCTAATA+TGG + chr5.3:6364623-6364642 None:intergenic 20.0%
!! CAAAAGAAGAAAAAAAATGA+GGG - chr5.3:6364902-6364921 MS.gene050165:intron 20.0%
!! CAAATTAATATGTTGAAGAA+GGG - chr5.3:6365098-6365117 MS.gene050165:CDS 20.0%
!! TACTAATCCCTATAAATTAT+TGG + chr5.3:6365335-6365354 None:intergenic 20.0%
!! TATGACAATACCTTTATAAA+TGG + chr5.3:6365202-6365221 None:intergenic 20.0%
!! TCAAATTAATATGTTGAAGA+AGG - chr5.3:6365097-6365116 MS.gene050165:CDS 20.0%
!! TTTAAACAACTTCGAATAAT+AGG + chr5.3:6364562-6364581 None:intergenic 20.0%
!!! AAGTATTTGTTACAATGAAT+TGG + chr5.3:6363569-6363588 None:intergenic 20.0%
!!! CATATTAGAATTTGGATTTT+TGG - chr5.3:6364621-6364640 MS.gene050165:intron 20.0%
!!! CTCATTTTTTTTCTTCTTTT+GGG + chr5.3:6364903-6364922 None:intergenic 20.0%
! AAAAAACCTGAAGAAATACT+TGG + chr5.3:6363516-6363535 None:intergenic 25.0%
! AAAAACCTGAAGAAATACTT+GGG + chr5.3:6363515-6363534 None:intergenic 25.0%
! ACTACTAGTAAATGTTCATT+AGG - chr5.3:6364238-6364257 MS.gene050165:intron 25.0%
! ATTTCTATTTGAAGGTTACA+TGG - chr5.3:6364800-6364819 MS.gene050165:intron 25.0%
! CCAAAAGAAGAAAAAAAATG+AGG - chr5.3:6364901-6364920 MS.gene050165:intron 25.0%
! CTTTCTCCCAATAATTTATA+GGG - chr5.3:6365325-6365344 MS.gene050165:CDS 25.0%
! TACAACACATTTAATGTGTT+GGG + chr5.3:6364699-6364718 None:intergenic 25.0%
! TCAAATAGAAATTTGATCCA+AGG + chr5.3:6364792-6364811 None:intergenic 25.0%
! TGGATCAAATTTCTATTTGA+AGG - chr5.3:6364792-6364811 MS.gene050165:intron 25.0%
! TTAATAACAGTATAGAGTCA+TGG + chr5.3:6364005-6364024 None:intergenic 25.0%
!!! CCTCATTTTTTTTCTTCTTT+TGG + chr5.3:6364904-6364923 None:intergenic 25.0%
AAATGAAATCTCATGTGTGT+TGG + chr5.3:6364100-6364119 None:intergenic 30.0%
AGACCTTATAAGCACTAAAA+AGG - chr5.3:6364656-6364675 MS.gene050165:intron 30.0%
AGATATTGTGGAAATCAGAT+TGG - chr5.3:6365039-6365058 MS.gene050165:intron 30.0%
ATCTTCCAACATATTTACCT+TGG - chr5.3:6364772-6364791 MS.gene050165:intron 30.0%
ATTACTTACACATGAATAGG+AGG - chr5.3:6364325-6364344 MS.gene050165:intron 30.0%
CATTTCATTTGCCATCATTT+CGG + chr5.3:6364725-6364744 None:intergenic 30.0%
CCTATAAATTATTGGGAGAA+AGG + chr5.3:6365327-6365346 None:intergenic 30.0%
CCTTTCTCCCAATAATTTAT+AGG - chr5.3:6365324-6365343 MS.gene050165:CDS 30.0%
CGTAGGTTATCCATTTATAA+AGG - chr5.3:6365189-6365208 MS.gene050165:CDS 30.0%
CTACAACACATTTAATGTGT+TGG + chr5.3:6364700-6364719 None:intergenic 30.0%
CTTCAATTCACTTAAACACA+AGG + chr5.3:6365498-6365517 None:intergenic 30.0%
GCTCATACCATATTAGAATT+TGG - chr5.3:6364613-6364632 MS.gene050165:intron 30.0%
GTTGGGTTTATTCATCAATA+TGG + chr5.3:6364682-6364701 None:intergenic 30.0%
TATGAGCTCTCATTTAACAA+AGG + chr5.3:6364600-6364619 None:intergenic 30.0%
TGGATAATAATGAGATGAGA+GGG + chr5.3:6363549-6363568 None:intergenic 30.0%
TTGATCCAAGGTAAATATGT+TGG + chr5.3:6364780-6364799 None:intergenic 30.0%
TTGGATAATAATGAGATGAG+AGG + chr5.3:6363550-6363569 None:intergenic 30.0%
!! TTTTTAGTGCTTATAAGGTC+TGG + chr5.3:6364657-6364676 None:intergenic 30.0%
!!! TTTATTTTTGTCCTACTTGC+AGG - chr5.3:6365149-6365168 MS.gene050165:CDS 30.0%
AAACTAGGTTTAGCAATGAG+AGG + chr5.3:6363787-6363806 None:intergenic 35.0%
AAACTGGAAGATGGGAATTT+GGG - chr5.3:6365447-6365466 MS.gene050165:intron 35.0%
AATGTTGTGTTTACGAGGAT+TGG + chr5.3:6364397-6364416 None:intergenic 35.0%
ACCTTCTACATAGAATCCAA+AGG + chr5.3:6364456-6364475 None:intergenic 35.0%
ATAGCAATGTTATGTCTCCT+AGG + chr5.3:6364426-6364445 None:intergenic 35.0%
ATCCTAATCACAACAGCAAT+TGG + chr5.3:6365416-6365435 None:intergenic 35.0%
CATCCAAAAGAAACATTCAC+CGG + chr5.3:6365370-6365389 None:intergenic 35.0%
CCTTCTACATAGAATCCAAA+GGG + chr5.3:6364455-6364474 None:intergenic 35.0%
CGAAATGATGGCAAATGAAA+TGG - chr5.3:6364723-6364742 MS.gene050165:intron 35.0%
GGATAATGCTGATGAAGTTT+CGG - chr5.3:6363870-6363889 MS.gene050165:intron 35.0%
GTCATATCAAGACAAAATGC+TGG - chr5.3:6365216-6365235 MS.gene050165:CDS 35.0%
TAACTTACCCTTCATTTCCA+GGG - chr5.3:6363726-6363745 MS.gene050165:intron 35.0%
TCAGCTCTCACAATAAAACT+AGG + chr5.3:6363802-6363821 None:intergenic 35.0%
TGATGAAAATCCTGAAGCTT+CGG - chr5.3:6363849-6363868 MS.gene050165:intron 35.0%
TGTGCAGATATTGCATAAGA+GGG - chr5.3:6364967-6364986 MS.gene050165:intron 35.0%
TGTTGTGATTAGGATAGAAG+AGG - chr5.3:6365421-6365440 MS.gene050165:intron 35.0%
TTATAAGGTCTGGATGCATT+TGG + chr5.3:6364647-6364666 None:intergenic 35.0%
TTGTGCAGATATTGCATAAG+AGG - chr5.3:6364966-6364985 MS.gene050165:intron 35.0%
! ATCAACATTTGAAACAGCCT+CGG + chr5.3:6363833-6363852 None:intergenic 35.0%
! ATCCAATTGCTGTTGTGATT+AGG - chr5.3:6365411-6365430 MS.gene050165:intron 35.0%
! ATTAGTACTGTCATTTGCAC+CGG - chr5.3:6365348-6365367 MS.gene050165:CDS 35.0%
! TTTGTTGGAGGACATTGATT+AGG + chr5.3:6363661-6363680 None:intergenic 35.0%
!! CCATTTGCTTTTGACACTTT+CGG + chr5.3:6364502-6364521 None:intergenic 35.0%
!! GTTAAGCTTGGTGATGTTAT+GGG - chr5.3:6363964-6363983 MS.gene050165:intron 35.0%
!! TCAATGAACTCTGAAATGCA+TGG - chr5.3:6364937-6364956 MS.gene050165:intron 35.0%
!! TGGCCTTTTTAGTGCTTATA+AGG + chr5.3:6364662-6364681 None:intergenic 35.0%
!! TGTTAAGCTTGGTGATGTTA+TGG - chr5.3:6363963-6363982 MS.gene050165:intron 35.0%
!! TTAAGCTTGGTGATGTTATG+GGG - chr5.3:6363965-6363984 MS.gene050165:intron 35.0%
!!! ATTGGTTTTGCCATCCAAAA+AGG + chr5.3:6364379-6364398 None:intergenic 35.0%
AACACAACATTCATGGACCT+AGG - chr5.3:6364406-6364425 MS.gene050165:intron 40.0%
AAGAGGTTCAAACTGGAAGA+TGG - chr5.3:6365438-6365457 MS.gene050165:intron 40.0%
ACCAATTCATCTCTGTAAGG+AGG + chr5.3:6364538-6364557 None:intergenic 40.0%
AGACAAACTCGTGTTAAGCT+TGG - chr5.3:6363952-6363971 MS.gene050165:intron 40.0%
AGAGGTTCAAACTGGAAGAT+GGG - chr5.3:6365439-6365458 MS.gene050165:intron 40.0%
AGCTTAACACGAGTTTGTCT+AGG + chr5.3:6363952-6363971 None:intergenic 40.0%
AGGATAGAAGAGGTTCAAAC+TGG - chr5.3:6365431-6365450 MS.gene050165:intron 40.0%
ATTACAGCGCCATGAAATTG+AGG + chr5.3:6363761-6363780 None:intergenic 40.0%
CAAACTGGAAGATGGGAATT+TGG - chr5.3:6365446-6365465 MS.gene050165:intron 40.0%
CAAATGAAATGGCCTAAAGG+TGG - chr5.3:6364734-6364753 MS.gene050165:intron 40.0%
CAACTGACACTTCAGATCAA+AGG - chr5.3:6364069-6364088 MS.gene050165:intron 40.0%
CACAACAGCAATTGGATACA+TGG + chr5.3:6365408-6365427 None:intergenic 40.0%
CATTGCTATGCATAACCCTT+TGG - chr5.3:6364437-6364456 MS.gene050165:intron 40.0%
CCATGAATGTTGTGTTTACG+AGG + chr5.3:6364402-6364421 None:intergenic 40.0%
CCCTTTGGATTCTATGTAGA+AGG - chr5.3:6364452-6364471 MS.gene050165:intron 40.0%
CCTCGTAAACACAACATTCA+TGG - chr5.3:6364399-6364418 MS.gene050165:intron 40.0%
CTTCTTCGACCTCAATTTCA+TGG - chr5.3:6363749-6363768 MS.gene050165:CDS 40.0%
GATAACCTACGTTTGTTCTC+CGG + chr5.3:6365180-6365199 None:intergenic 40.0%
GATGAAGTTTCGGAAACTGA+AGG - chr5.3:6363880-6363899 MS.gene050165:intron 40.0%
GGTACCAATTCATCTCTGTA+AGG + chr5.3:6364541-6364560 None:intergenic 40.0%
GTAACTTACCCTTCATTTCC+AGG - chr5.3:6363725-6363744 MS.gene050165:intron 40.0%
TCCTCCTTACAGAGATGAAT+TGG - chr5.3:6364534-6364553 MS.gene050165:intron 40.0%
TGGAAGATCTGCCTTAATTG+CGG + chr5.3:6364760-6364779 None:intergenic 40.0%
TGGCAAATGAAATGGCCTAA+AGG - chr5.3:6364731-6364750 MS.gene050165:intron 40.0%
TTAACACGAGTTTGTCTAGG+CGG + chr5.3:6363949-6363968 None:intergenic 40.0%
! AACTGAAGGAGAACAGGTTT+TGG - chr5.3:6363894-6363913 MS.gene050165:intron 40.0%
! ATTTGAAACAGCCTCGGAAT+TGG + chr5.3:6363827-6363846 None:intergenic 40.0%
!! AAGAGTGAGGGTACTTACAT+TGG + chr5.3:6365303-6365322 None:intergenic 40.0%
!! AGAGTGAGGGTACTTACATT+GGG + chr5.3:6365302-6365321 None:intergenic 40.0%
!! CCGAAAGTGTCAAAAGCAAA+TGG - chr5.3:6364499-6364518 MS.gene050165:intron 40.0%
!! GAAGAGAAACCTAGCTTTGT+TGG + chr5.3:6363676-6363695 None:intergenic 40.0%
!! TAAGCTTGGTGATGTTATGG+GGG - chr5.3:6363966-6363985 MS.gene050165:intron 40.0%
AAGAATTATTGCCGGCACAG+GGG - chr5.3:6365263-6365282 MS.gene050165:CDS 45.0%
AAGTTCCGGAGAACAAACGT+AGG - chr5.3:6365172-6365191 MS.gene050165:CDS 45.0%
ACACAAACACGAACACCAGA+CGG + chr5.3:6364151-6364170 None:intergenic 45.0%
ACACATGAATAGGAGGCAAG+CGG - chr5.3:6364332-6364351 MS.gene050165:intron 45.0%
ATATCTCCAGTCCTTAGGTC+AGG + chr5.3:6365025-6365044 None:intergenic 45.0%
CAATGTCCTCCAACAAAGCT+AGG - chr5.3:6363664-6363683 MS.gene050165:intron 45.0%
CCACAATATCTCCAGTCCTT+AGG + chr5.3:6365030-6365049 None:intergenic 45.0%
CCTAAGGACTGGAGATATTG+TGG - chr5.3:6365027-6365046 MS.gene050165:intron 45.0%
CTAGGTTTAGCAATGAGAGG+AGG + chr5.3:6363784-6363803 None:intergenic 45.0%
GAAGAAGCCCTGGAAATGAA+GGG + chr5.3:6363736-6363755 None:intergenic 45.0%
GAAGAATTATTGCCGGCACA+GGG - chr5.3:6365262-6365281 MS.gene050165:CDS 45.0%
GGCTTCCCAAGTATTTCTTC+AGG - chr5.3:6363507-6363526 MS.gene050165:CDS 45.0%
TAAGTTACGAGAAGCGATGG+TGG + chr5.3:6363713-6363732 None:intergenic 45.0%
TCAGCATTATCCGAAGCTTC+AGG + chr5.3:6363862-6363881 None:intergenic 45.0%
TGCCATCCAAAAAGGTCTAG+CGG + chr5.3:6364371-6364390 None:intergenic 45.0%
TTCGGAAACTGAAGGAGAAC+AGG - chr5.3:6363888-6363907 MS.gene050165:intron 45.0%
TTGCAGCTTCAGATGAAGTG+AGG - chr5.3:6364993-6365012 MS.gene050165:intron 45.0%
TTTGGATTCTGCATCTGAGG+TGG - chr5.3:6363912-6363931 MS.gene050165:intron 45.0%
! ATACATGGTGATGCACAGCA+AGG + chr5.3:6365393-6365412 None:intergenic 45.0%
! CTGTGCCGGCAATAATTCTT+CGG + chr5.3:6365263-6365282 None:intergenic 45.0%
!! GAGAAACCTAGCTTTGTTGG+AGG + chr5.3:6363673-6363692 None:intergenic 45.0%
!! GCACCGGTGAATGTTTCTTT+TGG - chr5.3:6365364-6365383 MS.gene050165:CDS 45.0%
!!! GGTTTTGGATTCTGCATCTG+AGG - chr5.3:6363909-6363928 MS.gene050165:intron 45.0%
AATTGAGGTCGAAGAAGCCC+TGG + chr5.3:6363746-6363765 None:intergenic 50.0%
CACATGAATAGGAGGCAAGC+GGG - chr5.3:6364333-6364352 MS.gene050165:intron 50.0%
CCTAAAGGTGGCCGCAATTA+AGG - chr5.3:6364746-6364765 MS.gene050165:intron 50.0%
CCTTAATTGCGGCCACCTTT+AGG + chr5.3:6364749-6364768 None:intergenic 50.0%
CGAAGAAGCCCTGGAAATGA+AGG + chr5.3:6363737-6363756 None:intergenic 50.0%
CGAAGAATTATTGCCGGCAC+AGG - chr5.3:6365261-6365280 MS.gene050165:CDS 50.0%
CGCGTCCGAAGAATTATTGC+CGG - chr5.3:6365255-6365274 MS.gene050165:CDS 50.0%
GGGTAAGTTACGAGAAGCGA+TGG + chr5.3:6363716-6363735 None:intergenic 50.0%
GGTCAACATCCTCTGATGCT+AGG - chr5.3:6364473-6364492 MS.gene050165:intron 50.0%
GTCCTACTTGCAGGAAGTTC+CGG - chr5.3:6365158-6365177 MS.gene050165:CDS 50.0%
TGGGAGAAAGGCAAGAGTGA+GGG + chr5.3:6365315-6365334 None:intergenic 50.0%
TTGGGAGAAAGGCAAGAGTG+AGG + chr5.3:6365316-6365335 None:intergenic 50.0%
TTTCGGCTTCCTAGCATCAG+AGG + chr5.3:6364485-6364504 None:intergenic 50.0%
! GAGAGCTGATTCCAATTCCG+AGG - chr5.3:6363813-6363832 MS.gene050165:CDS 50.0%
! GTGTTGTAGCGCCGAAATGA+TGG - chr5.3:6364711-6364730 MS.gene050165:intron 50.0%
ACCACTCCTGACCTAAGGAC+TGG - chr5.3:6365016-6365035 MS.gene050165:intron 55.0%
ACGAGTTTGTCTAGGCGGCT+TGG + chr5.3:6363944-6363963 None:intergenic 55.0%
CTCCGGAACTTCCTGCAAGT+AGG + chr5.3:6365163-6365182 None:intergenic 55.0%
GACTATCTCAACCCCTGTGC+CGG + chr5.3:6365277-6365296 None:intergenic 55.0%
TCCAGTCCTTAGGTCAGGAG+TGG + chr5.3:6365020-6365039 None:intergenic 55.0%
TGAGGACCACTCCTGACCTA+AGG - chr5.3:6365011-6365030 MS.gene050165:intron 55.0%
! CGCCGCTAGACCTTTTTGGA+TGG - chr5.3:6364366-6364385 MS.gene050165:intron 55.0%
! GGATTCTGCATCTGAGGTGG+AGG - chr5.3:6363915-6363934 MS.gene050165:intron 55.0%
!! ACGAGAAGCGATGGTGGAAG+CGG + chr5.3:6363707-6363726 None:intergenic 55.0%
CGAGAGTTGTCGTGTCCGTC+TGG - chr5.3:6364133-6364152 MS.gene050165:intron 60.0%
! GCTGCGCCGCTAGACCTTTT+TGG - chr5.3:6364362-6364381 MS.gene050165:intron 60.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 6363505 6365526 6363505 ID=MS.gene050165
chr5.3 mRNA 6363505 6365526 6363505 ID=MS.gene050165.t1;Parent=MS.gene050165
chr5.3 exon 6365503 6365526 6365503 ID=MS.gene050165.t1.exon1;Parent=MS.gene050165.t1
chr5.3 CDS 6365503 6365526 6365503 ID=cds.MS.gene050165.t1;Parent=MS.gene050165.t1
chr5.3 exon 6365044 6365385 6365044 ID=MS.gene050165.t1.exon2;Parent=MS.gene050165.t1
chr5.3 CDS 6365044 6365385 6365044 ID=cds.MS.gene050165.t1;Parent=MS.gene050165.t1
chr5.3 exon 6363971 6364057 6363971 ID=MS.gene050165.t1.exon3;Parent=MS.gene050165.t1
chr5.3 CDS 6363971 6364057 6363971 ID=cds.MS.gene050165.t1;Parent=MS.gene050165.t1
chr5.3 exon 6363727 6363860 6363727 ID=MS.gene050165.t1.exon4;Parent=MS.gene050165.t1
chr5.3 CDS 6363727 6363860 6363727 ID=cds.MS.gene050165.t1;Parent=MS.gene050165.t1
chr5.3 exon 6363505 6363598 6363505 ID=MS.gene050165.t1.exon5;Parent=MS.gene050165.t1
chr5.3 CDS 6363505 6363598 6363505 ID=cds.MS.gene050165.t1;Parent=MS.gene050165.t1
Gene Sequence

>MS.gene050165

ATGGCTTCCCAAGTATTTCTTCAGGTTTTTTTTTTTTCTTTCCCTCTCATCTCATTATTATCCAATTCATTGTAACAAATACTTATGATGCATTTTCAATTTCAATTTCACTACTTAACTCAAAAACTTTCATTTTAACAGACACTATTTGCTCCTAATCAATGTCCTCCAACAAAGCTAGGTTTCTCTTCTGCTTGCTCCGCTTCCACCATCGCTTCTCGTAACTTACCCTTCATTTCCAGGGCTTCTTCGACCTCAATTTCATGGCGCTGTAATCCTCCTCTCATTGCTAAACCTAGTTTTATTGTGAGAGCTGATTCCAATTCCGAGGCTGTTTCAAATGTTGATGAAAATCCTGAAGCTTCGGATAATGCTGATGAAGTTTCGGAAACTGAAGGAGAACAGGTTTTGGATTCTGCATCTGAGGTGGAGGAAGCCAAGCCGCCTAGACAAACTCGTGTTAAGCTTGGTGATGTTATGGGGGTAAGTTATTTCTTCCATGACTCTATACTGTTATTAATGATTAAGTTGAAATTTGAGTAATAAGTTTCTGAATGATATTAGCAACTGACACTTCAGATCAAAGGCGTGTCCAACACACATGAGATTTCATTTTCTCAAATTATTACGAGAGTTGTCGTGTCCGTCTGGTGTTCGTGTTTGTGTTAGTGCTTCTTAGATGATATTCAGTTCATTGATACAAAGTATAAGCTCCAATGTTAATATATAGACTACTACTAGTAAATGTTCATTAGGTAATTTAGAAATACAATTATGCTTATAATAGAAAATTTGGAGATTATATATATTTACTATCAATATTACTTACACATGAATAGGAGGCAAGCGGGCAACAAGCTGCGCCGCTAGACCTTTTTGGATGGCAAAACCAATCCTCGTAAACACAACATTCATGGACCTAGGAGACATAACATTGCTATGCATAACCCTTTGGATTCTATGTAGAAGGTCAACATCCTCTGATGCTAGGAAGCCGAAAGTGTCAAAAGCAAATGGTATATTTAACAGTCCTCCTTACAGAGATGAATTGGTACCTATTATTCGAAGTTGTTTAAATCGCTTTCGAGAAGTCCTTTGTTAAATGAGAGCTCATACCATATTAGAATTTGGATTTTTGGCCAAATGCATCCAGACCTTATAAGCACTAAAAAGGCCATATTGATGAATAAACCCAACACATTAAATGTGTTGTAGCGCCGAAATGATGGCAAATGAAATGGCCTAAAGGTGGCCGCAATTAAGGCAGATCTTCCAACATATTTACCTTGGATCAAATTTCTATTTGAAGGTTACATGGCAAGTGTGAATGTGTTGATTATCGAGTTAGATTTTCACGTTCTGTATCTTCAACTAGACTAAGAAAATAAGTAGAAACCCAAAAGAAGAAAAAAAATGAGGGAGAAAGTAAAGATCAATGAACTCTGAAATGCATGGTATTGTTTGTGCAGATATTGCATAAGAGGGCAATTGCAGCTTCAGATGAAGTGAGGACCACTCCTGACCTAAGGACTGGAGATATTGTGGAAATCAGATTGGTATTGACATTGTTGTTTTTTTTTTCTTTCTTTCTTTCAAATTAATATGTTGAAGAAGGGTCATAAGATGATATGATTTATGTGGTCATTTATTTTTGTCCTACTTGCAGGAAGTTCCGGAGAACAAACGTAGGTTATCCATTTATAAAGGTATTGTCATATCAAGACAAAATGCTGGTATTCACACGACTATTCGCGTCCGAAGAATTATTGCCGGCACAGGGGTTGAGATAGTCTTCCCAATGTAAGTACCCTCACTCTTGCCTTTCTCCCAATAATTTATAGGGATTAGTACTGTCATTTGCACCGGTGAATGTTTCTTTTGGATGCCTTGCTGTGCATCACCATGTATCCAATTGCTGTTGTGATTAGGATAGAAGAGGTTCAAACTGGAAGATGGGAATTTGGGACGAGTTCTTCATTTAACAGTTTTACCTTGTGTTTAAGTGAATTGAAGTCCCTTTAA

Protein sequence

>MS.gene050165.t1

MASQVFLQTLFAPNQCPPTKLGFSSACSASTIASRNLPFISRASSTSISWRCNPPLIAKPSFIVRADSNSEAVSNVDENPEASDNADEVSETEGEQVLDSASEVEEAKPPRQTRVKLGDVMGILHKRAIAASDEVRTTPDLRTGDIVEIRLEVPENKRRLSIYKGIVISRQNAGIHTTIRVRRIIAGTGVEIVFPMIEEVQTGRWEFGTSSSFNSFTLCLSELKSL