Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061738.t1 | XP_013457925.1 | 99.6 | 448 | 2 | 0 | 1 | 448 | 1 | 448 | 1.30E-266 | 928.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061738.t1 | Q9CA75 | 79.9 | 453 | 81 | 4 | 1 | 443 | 1 | 453 | 8.8e-219 | 760.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061738.t1 | A0A072URH9 | 99.6 | 448 | 2 | 0 | 1 | 448 | 1 | 448 | 9.6e-267 | 928.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054178 | MS.gene061738 | 0.80286 | 4.59E-49 | -1.69E-46 |
| MS.gene054617 | MS.gene061738 | 0.840655 | 7.63E-58 | -1.69E-46 |
| MS.gene055531 | MS.gene061738 | 0.805475 | 1.31E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061738.t1 | MTR_4g108940 | 99.554 | 448 | 2 | 0 | 1 | 448 | 1 | 448 | 0.0 | 929 |
| MS.gene061738.t1 | MTR_3g037340 | 87.112 | 419 | 53 | 1 | 30 | 448 | 36 | 453 | 0.0 | 777 |
| MS.gene061738.t1 | MTR_4g119880 | 57.968 | 433 | 158 | 4 | 28 | 436 | 8 | 440 | 0.0 | 552 |
| MS.gene061738.t1 | MTR_7g108675 | 57.237 | 456 | 159 | 6 | 29 | 448 | 9 | 464 | 0.0 | 548 |
| MS.gene061738.t1 | MTR_8g058553 | 59.113 | 406 | 130 | 6 | 29 | 398 | 9 | 414 | 1.50e-176 | 505 |
| MS.gene061738.t1 | MTR_4g097240 | 47.027 | 370 | 150 | 7 | 94 | 430 | 75 | 431 | 3.68e-115 | 345 |
| MS.gene061738.t1 | MTR_5g015260 | 46.610 | 354 | 149 | 7 | 96 | 412 | 81 | 431 | 5.58e-111 | 334 |
| MS.gene061738.t1 | MTR_4g097230 | 44.416 | 385 | 166 | 11 | 72 | 420 | 43 | 415 | 2.68e-103 | 314 |
| MS.gene061738.t1 | MTR_4g108950 | 62.992 | 127 | 3 | 1 | 281 | 407 | 1 | 83 | 6.88e-48 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061738.t1 | AT5G07720 | 76.805 | 457 | 97 | 2 | 1 | 448 | 1 | 457 | 0.0 | 757 |
| MS.gene061738.t1 | AT1G74380 | 78.808 | 453 | 86 | 3 | 1 | 443 | 1 | 453 | 0.0 | 747 |
| MS.gene061738.t1 | AT1G18690 | 65.385 | 494 | 102 | 6 | 19 | 443 | 18 | 511 | 0.0 | 644 |
| MS.gene061738.t1 | AT1G18690 | 65.385 | 494 | 102 | 6 | 19 | 443 | 18 | 511 | 0.0 | 644 |
| MS.gene061738.t1 | AT1G18690 | 65.385 | 494 | 102 | 6 | 19 | 443 | 18 | 511 | 0.0 | 644 |
| MS.gene061738.t1 | AT1G18690 | 65.385 | 494 | 102 | 6 | 19 | 443 | 18 | 511 | 0.0 | 644 |
| MS.gene061738.t1 | AT3G62720 | 57.569 | 436 | 156 | 4 | 30 | 436 | 10 | 445 | 0.0 | 538 |
| MS.gene061738.t1 | AT3G62720 | 57.569 | 436 | 156 | 4 | 30 | 436 | 10 | 445 | 0.0 | 538 |
| MS.gene061738.t1 | AT4G02500 | 58.124 | 437 | 153 | 4 | 30 | 436 | 10 | 446 | 0.0 | 531 |
| MS.gene061738.t1 | AT2G22900 | 42.133 | 375 | 169 | 8 | 77 | 412 | 66 | 431 | 3.26e-99 | 304 |
| MS.gene061738.t1 | AT4G37690 | 42.382 | 361 | 160 | 6 | 91 | 412 | 63 | 414 | 1.82e-98 | 302 |
| MS.gene061738.t1 | AT4G38310 | 42.149 | 121 | 61 | 4 | 91 | 209 | 4 | 117 | 1.85e-24 | 98.2 |
Find 121 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTACTATTTGCATGGTTAT+TGG | 0.153701 | 8.1:-16490708 | MS.gene061738:CDS |
| AGAATCCCAATCCGAGATTT+TGG | 0.154778 | 8.1:+16491368 | None:intergenic |
| CTTTGGATTTGCTTGATGTT+TGG | 0.210969 | 8.1:-16490894 | MS.gene061738:CDS |
| TTTGGATTTGCTTGATGTTT+GGG | 0.235100 | 8.1:-16490893 | MS.gene061738:CDS |
| TAAGTATGATGATTATAATT+TGG | 0.236646 | 8.1:-16491007 | MS.gene061738:CDS |
| CGAACAAAACTAGGGTATTC+AGG | 0.252554 | 8.1:+16491318 | None:intergenic |
| TTACTATTTGCATGGTTATT+GGG | 0.254625 | 8.1:-16490707 | MS.gene061738:CDS |
| GATTGAGATTGTTTATAATA+TGG | 0.260363 | 8.1:-16491175 | MS.gene061738:CDS |
| TTCTAATTCTCTTAATCTTC+GGG | 0.268944 | 8.1:+16490464 | None:intergenic |
| TTTCTAATTCTCTTAATCTT+CGG | 0.288847 | 8.1:+16490463 | None:intergenic |
| CACCAAATCCACTCAACTTC+AGG | 0.293022 | 8.1:+16491081 | None:intergenic |
| AGTGGCATTTGGATTGAAAA+AGG | 0.294582 | 8.1:+16491404 | None:intergenic |
| GAGAAGTATCATCCGGGATT+AGG | 0.296194 | 8.1:-16490652 | MS.gene061738:CDS |
| ATATGGAGTTAGCTGGTTAT+TGG | 0.301811 | 8.1:-16491143 | MS.gene061738:CDS |
| AGAAGTATCATCCGGGATTA+GGG | 0.307944 | 8.1:-16490651 | MS.gene061738:CDS |
| TAATATGGCTCATCTTGATA+TGG | 0.312719 | 8.1:-16491160 | MS.gene061738:CDS |
| TAGGAATTGTCAGTGGTCTT+TGG | 0.314797 | 8.1:-16490911 | MS.gene061738:CDS |
| TATGGAGTTAGCTGGTTATT+GGG | 0.322730 | 8.1:-16491142 | MS.gene061738:CDS |
| TTTCAATTTCGCTGATAATC+AGG | 0.327651 | 8.1:-16490527 | MS.gene061738:CDS |
| AACAAATAATGATCCCCAAT+TGG | 0.330618 | 8.1:+16491240 | None:intergenic |
| GATTATAATTTGGTTATTCA+TGG | 0.333753 | 8.1:-16490997 | MS.gene061738:CDS |
| TTTGATTCAGCCAAGCTTTA+CGG | 0.336535 | 8.1:+16491343 | None:intergenic |
| TGCTCAAACTCTACGGGTTC+AGG | 0.341836 | 8.1:-16490504 | MS.gene061738:CDS |
| TATTTGCATGGTTATTGGGC+TGG | 0.343774 | 8.1:-16490703 | MS.gene061738:CDS |
| TGGTTTCTTCGATCATGTTT+TGG | 0.349103 | 8.1:+16491490 | None:intergenic |
| GGGCTAAATTGCCTATGATT+AGG | 0.366293 | 8.1:-16491122 | MS.gene061738:CDS |
| CTACTAAGACACCTCTCAAC+AGG | 0.366394 | 8.1:+16490562 | None:intergenic |
| GCTTGATGTTTGGGCTCCTA+TGG | 0.367140 | 8.1:-16490884 | MS.gene061738:CDS |
| ACCCTGAAGTTGAGTGGATT+TGG | 0.369537 | 8.1:-16491083 | MS.gene061738:CDS |
| TTCTGCTCAAACAACAAATC+AGG | 0.377468 | 8.1:+16490970 | None:intergenic |
| AAATGAGACAGTTACTCCTT+TGG | 0.389872 | 8.1:-16490443 | MS.gene061738:CDS |
| AAGCCTTGTGATAACCCAAT+TGG | 0.394020 | 8.1:-16491255 | MS.gene061738:CDS |
| ATTGGGCTGGGTTGGTTGAT+CGG | 0.403121 | 8.1:-16490690 | MS.gene061738:CDS |
| ACAAATAATGATCCCCAATT+GGG | 0.409108 | 8.1:+16491241 | None:intergenic |
| TCTTCCCTGACAGGACCTTT+CGG | 0.411703 | 8.1:+16490859 | None:intergenic |
| TGGCCCCAAAATCTCGGATT+GGG | 0.428891 | 8.1:-16491373 | MS.gene061738:CDS |
| AGCCTTGTGATAACCCAATT+GGG | 0.429820 | 8.1:-16491254 | MS.gene061738:CDS |
| AAGGTGTTATCTTTGTCATC+AGG | 0.435503 | 8.1:+16491423 | None:intergenic |
| TCATGGATTGCTATCAATAC+TGG | 0.441376 | 8.1:-16490946 | MS.gene061738:CDS |
| CCAAGGGTAAAAGTGGCATT+TGG | 0.442611 | 8.1:+16491393 | None:intergenic |
| TGGGTCCGAAAGGTCCTGTC+AGG | 0.446153 | 8.1:-16490864 | MS.gene061738:CDS |
| GCTTTACCTCGAACAAAACT+AGG | 0.447188 | 8.1:+16491309 | None:intergenic |
| TTGGAGTTTGTTGCTGTGGT+TGG | 0.448034 | 8.1:+16491654 | None:intergenic |
| AACATTAACCTCCTAATCAT+AGG | 0.451739 | 8.1:+16491111 | None:intergenic |
| CTTGATGTTTGGGCTCCTAT+GGG | 0.451772 | 8.1:-16490883 | MS.gene061738:CDS |
| AATGTCTTCGAATATCAAAC+TGG | 0.455388 | 8.1:+16490410 | None:intergenic |
| GCATGGTTATTGGGCTGGGT+TGG | 0.459215 | 8.1:-16490698 | MS.gene061738:CDS |
| ATTGATTATTGTAGATTACA+TGG | 0.459859 | 8.1:-16491198 | MS.gene061738:CDS |
| GAAGGAGAAGTGGATGGATA+AGG | 0.466292 | 8.1:-16490746 | MS.gene061738:CDS |
| ATTTGCATGGTTATTGGGCT+GGG | 0.471612 | 8.1:-16490702 | MS.gene061738:CDS |
| CACAACAGAAGCAGCAGTGC+AGG | 0.475156 | 8.1:-16491681 | MS.gene061738:CDS |
| TACCCTTGGCCCCAAAATCT+CGG | 0.476888 | 8.1:-16491379 | MS.gene061738:CDS |
| CATCTTGATATGGAGTTAGC+TGG | 0.484869 | 8.1:-16491150 | MS.gene061738:CDS |
| AGTTGAGTGGATTTGGTGGA+TGG | 0.487432 | 8.1:-16491076 | MS.gene061738:CDS |
| ATATTTGTTGCTGTCGAAGA+AGG | 0.487805 | 8.1:-16490764 | MS.gene061738:CDS |
| TTTCCCGCCTCTTCCCTGAC+AGG | 0.490947 | 8.1:+16490850 | None:intergenic |
| ATTGGGTTATCACAAGGCTT+AGG | 0.492658 | 8.1:+16491258 | None:intergenic |
| GATGATTGAGAAGTATCATC+CGG | 0.498498 | 8.1:-16490659 | MS.gene061738:CDS |
| GGCTAATCTTAAGGGGAGAC+CGG | 0.499656 | 8.1:-16490818 | MS.gene061738:CDS |
| TGTAAGCCGTGTGGAAGTTA+TGG | 0.499800 | 8.1:-16490592 | MS.gene061738:CDS |
| AATCAGGTGCTCAAACTCTA+CGG | 0.500273 | 8.1:-16490511 | MS.gene061738:CDS |
| TGATCATCCGCTTCAAAAGC+CGG | 0.500867 | 8.1:+16490799 | None:intergenic |
| TTGGCCCCAAAATCTCGGAT+TGG | 0.500960 | 8.1:-16491374 | MS.gene061738:CDS |
| GAACAAAACTAGGGTATTCA+GGG | 0.501504 | 8.1:+16491319 | None:intergenic |
| ACCAAATCCACTCAACTTCA+GGG | 0.502114 | 8.1:+16491082 | None:intergenic |
| TTGGTTAACGGCGTCGGAGT+CGG | 0.516215 | 8.1:+16491509 | None:intergenic |
| GTCAGCGTCGGATCGGATCT+CGG | 0.516879 | 8.1:+16491455 | None:intergenic |
| CTCGTCTTACGTGGCACTAT+CGG | 0.519609 | 8.1:-16491549 | MS.gene061738:CDS |
| TCTTTGTCATCAGGATCAGA+TGG | 0.520049 | 8.1:+16491432 | None:intergenic |
| GAGAATTCTTACTATTTGCA+TGG | 0.526526 | 8.1:-16490715 | MS.gene061738:CDS |
| GGGATTCTGACCGTAAAGCT+TGG | 0.532442 | 8.1:-16491353 | MS.gene061738:CDS |
| GGGTTATCACAAGGCTTAGG+AGG | 0.532953 | 8.1:+16491261 | None:intergenic |
| TTTGGGGCCAAGGGTAAAAG+TGG | 0.535238 | 8.1:+16491386 | None:intergenic |
| GCTGTTGGAGTTTGTTGCTG+TGG | 0.538704 | 8.1:+16491650 | None:intergenic |
| CACCTCTCATCCCCTAATCC+CGG | 0.538975 | 8.1:+16490640 | None:intergenic |
| TTGATTATTGTAGATTACAT+GGG | 0.539461 | 8.1:-16491197 | MS.gene061738:CDS |
| CTAAATTGCCTATGATTAGG+AGG | 0.543733 | 8.1:-16491119 | MS.gene061738:CDS |
| GAAAGGTCCTGTCAGGGAAG+AGG | 0.545835 | 8.1:-16490857 | MS.gene061738:CDS |
| ATCAGGTGCTCAAACTCTAC+GGG | 0.547907 | 8.1:-16490510 | MS.gene061738:CDS |
| CCCACAAAATGAGTCACAAA+CGG | 0.555223 | 8.1:+16490616 | None:intergenic |
| CTGAAGTTGAGTGGATTTGG+TGG | 0.561532 | 8.1:-16491080 | MS.gene061738:CDS |
| TGTTGTTTGAGCAGAAGTCA+TGG | 0.563372 | 8.1:-16490963 | MS.gene061738:CDS |
| AGGTCCTGTCAGGGAAGAGG+CGG | 0.566987 | 8.1:-16490854 | MS.gene061738:CDS |
| ACAGGACCTTTCGGACCCAT+AGG | 0.578826 | 8.1:+16490868 | None:intergenic |
| GATCTCGGCGATGATGCGGT+TGG | 0.579327 | 8.1:+16491470 | None:intergenic |
| TGGGTTGGTTGATCGGTATG+AGG | 0.581754 | 8.1:-16490683 | MS.gene061738:CDS |
| CGGGATTAGGGGATGAGAGG+TGG | 0.581990 | 8.1:-16490639 | MS.gene061738:CDS |
| TAATCATCATACTTAGACAA+AGG | 0.584692 | 8.1:+16491015 | None:intergenic |
| CGTCGGAGTCGGAAGAAATG+AGG | 0.586095 | 8.1:+16491520 | None:intergenic |
| GTCACCATCCTCGTCTTACG+TGG | 0.586985 | 8.1:-16491558 | MS.gene061738:CDS |
| ATCGGATCTCGGCGATGATG+CGG | 0.590160 | 8.1:+16491466 | None:intergenic |
| GTGTCTTAGTAGCATGGAGA+GGG | 0.593651 | 8.1:-16490551 | MS.gene061738:CDS |
| CAGATGGGTCAGCGTCGGAT+CGG | 0.594418 | 8.1:+16491448 | None:intergenic |
| GGTCCTGTCAGGGAAGAGGC+GGG | 0.595808 | 8.1:-16490853 | MS.gene061738:CDS |
| TCTGCTCAAACAACAAATCA+GGG | 0.599326 | 8.1:+16490971 | None:intergenic |
| CTTTGTCATCAGGATCAGAT+GGG | 0.599657 | 8.1:+16491433 | None:intergenic |
| TCCCCAATTGGGTTATCACA+AGG | 0.601485 | 8.1:+16491252 | None:intergenic |
| GTCGAAGAAGGAGAAGTGGA+TGG | 0.606642 | 8.1:-16490752 | MS.gene061738:CDS |
| TGAGAGGTGTCTTAGTAGCA+TGG | 0.606963 | 8.1:-16490557 | MS.gene061738:CDS |
| ATCCGGGATTAGGGGATGAG+AGG | 0.611943 | 8.1:-16490642 | MS.gene061738:CDS |
| TGGGCTCCTATGGGTCCGAA+AGG | 0.612377 | 8.1:-16490874 | MS.gene061738:CDS |
| AGGATCAGATGGGTCAGCGT+CGG | 0.619968 | 8.1:+16491443 | None:intergenic |
| CTTTACCTCGAACAAAACTA+GGG | 0.624355 | 8.1:+16491310 | None:intergenic |
| ATGATTGAGAAGTATCATCC+GGG | 0.624752 | 8.1:-16490658 | MS.gene061738:CDS |
| TGCTGTCGAAGAAGGAGAAG+TGG | 0.626321 | 8.1:-16490756 | MS.gene061738:CDS |
| AACTGGTCTACAAACTCCAA+AGG | 0.628025 | 8.1:+16490427 | None:intergenic |
| GGTGTCTTAGTAGCATGGAG+AGG | 0.639013 | 8.1:-16490552 | MS.gene061738:CDS |
| GGGTCCGAAAGGTCCTGTCA+GGG | 0.642339 | 8.1:-16490863 | MS.gene061738:CDS |
| CGATAGTGCCACGTAAGACG+AGG | 0.645824 | 8.1:+16491550 | None:intergenic |
| GCCTTGTGATAACCCAATTG+GGG | 0.650246 | 8.1:-16491253 | MS.gene061738:CDS |
| TACTAAGACACCTCTCAACA+GGG | 0.653180 | 8.1:+16490563 | None:intergenic |
| TGTCACACCCTGAAGTTGAG+TGG | 0.658397 | 8.1:-16491089 | MS.gene061738:CDS |
| GTTAAAATCACTATCCTCTG+TGG | 0.662757 | 8.1:-16491585 | MS.gene061738:CDS |
| TTGAGATCTGACGACCACGA+CGG | 0.662934 | 8.1:+16491622 | None:intergenic |
| AGTGCCACGTAAGACGAGGA+TGG | 0.666776 | 8.1:+16491554 | None:intergenic |
| ATGGTGATTACCCTGTTGAG+AGG | 0.676426 | 8.1:-16490573 | MS.gene061738:CDS |
| CTCTACGGGTTCAGGCATCG+CGG | 0.682395 | 8.1:-16490496 | MS.gene061738:CDS |
| GAAGTATCATCCGGGATTAG+GGG | 0.698377 | 8.1:-16490650 | MS.gene061738:CDS |
| TTTGTGGGTTGTAAGCCGTG+TGG | 0.723212 | 8.1:-16490601 | MS.gene061738:CDS |
| TAATCACCATAACTTCCACA+CGG | 0.726187 | 8.1:+16490586 | None:intergenic |
| GGATGGTGACGAAGCCACAG+AGG | 0.730125 | 8.1:+16491571 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGTATGATGATTATAATT+TGG | - | chr8.1:16491079-16491098 | MS.gene061738:CDS | 15.0% |
| !! | ATTGATTATTGTAGATTACA+TGG | - | chr8.1:16490888-16490907 | MS.gene061738:CDS | 20.0% |
| !! | GATTATAATTTGGTTATTCA+TGG | - | chr8.1:16491089-16491108 | MS.gene061738:CDS | 20.0% |
| !! | GATTGAGATTGTTTATAATA+TGG | - | chr8.1:16490911-16490930 | MS.gene061738:CDS | 20.0% |
| !! | TTGATTATTGTAGATTACAT+GGG | - | chr8.1:16490889-16490908 | MS.gene061738:CDS | 20.0% |
| !! | TTTCTAATTCTCTTAATCTT+CGG | + | chr8.1:16491626-16491645 | None:intergenic | 20.0% |
| ! | TAATCATCATACTTAGACAA+AGG | + | chr8.1:16491074-16491093 | None:intergenic | 25.0% |
| ! | TTACTATTTGCATGGTTATT+GGG | - | chr8.1:16491379-16491398 | MS.gene061738:CDS | 25.0% |
| ! | TTCTAATTCTCTTAATCTTC+GGG | + | chr8.1:16491625-16491644 | None:intergenic | 25.0% |
| !! | ATACTGGTAGTTTTCTTTTT+AGG | - | chr8.1:16491156-16491175 | MS.gene061738:CDS | 25.0% |
| !!! | TGATGCTTTTTTTACTGATA+TGG | - | chr8.1:16491037-16491056 | MS.gene061738:CDS | 25.0% |
| AACAAATAATGATCCCCAAT+TGG | + | chr8.1:16490849-16490868 | None:intergenic | 30.0% | |
| AACATTAACCTCCTAATCAT+AGG | + | chr8.1:16490978-16490997 | None:intergenic | 30.0% | |
| AATGTCTTCGAATATCAAAC+TGG | + | chr8.1:16491679-16491698 | None:intergenic | 30.0% | |
| ACAAATAATGATCCCCAATT+GGG | + | chr8.1:16490848-16490867 | None:intergenic | 30.0% | |
| CTTACTATTTGCATGGTTAT+TGG | - | chr8.1:16491378-16491397 | MS.gene061738:CDS | 30.0% | |
| GAGAATTCTTACTATTTGCA+TGG | - | chr8.1:16491371-16491390 | MS.gene061738:CDS | 30.0% | |
| TAATATGGCTCATCTTGATA+TGG | - | chr8.1:16490926-16490945 | MS.gene061738:CDS | 30.0% | |
| TTTCAATTTCGCTGATAATC+AGG | - | chr8.1:16491559-16491578 | MS.gene061738:CDS | 30.0% | |
| ! | TTTGGATTTGCTTGATGTTT+GGG | - | chr8.1:16491193-16491212 | MS.gene061738:CDS | 30.0% |
| !! | ATTTTGACGGCTAATCTTAA+GGG | - | chr8.1:16491260-16491279 | MS.gene061738:CDS | 30.0% |
| !! | TTCTTTTTAGGAATTGTCAG+TGG | - | chr8.1:16491168-16491187 | MS.gene061738:CDS | 30.0% |
| !!! | TTCGATCATGTTTTGGTTAA+CGG | + | chr8.1:16490592-16490611 | None:intergenic | 30.0% |
| AAATGAGACAGTTACTCCTT+TGG | - | chr8.1:16491643-16491662 | MS.gene061738:CDS | 35.0% | |
| AGTGGCATTTGGATTGAAAA+AGG | + | chr8.1:16490685-16490704 | None:intergenic | 35.0% | |
| ATATGGAGTTAGCTGGTTAT+TGG | - | chr8.1:16490943-16490962 | MS.gene061738:CDS | 35.0% | |
| CTAAATTGCCTATGATTAGG+AGG | - | chr8.1:16490967-16490986 | MS.gene061738:CDS | 35.0% | |
| CTTTACCTCGAACAAAACTA+GGG | + | chr8.1:16490779-16490798 | None:intergenic | 35.0% | |
| GTTAAAATCACTATCCTCTG+TGG | - | chr8.1:16490501-16490520 | MS.gene061738:CDS | 35.0% | |
| TAATCACCATAACTTCCACA+CGG | + | chr8.1:16491503-16491522 | None:intergenic | 35.0% | |
| TATGGAGTTAGCTGGTTATT+GGG | - | chr8.1:16490944-16490963 | MS.gene061738:CDS | 35.0% | |
| TCTGCTCAAACAACAAATCA+GGG | + | chr8.1:16491118-16491137 | None:intergenic | 35.0% | |
| TTCTGCTCAAACAACAAATC+AGG | + | chr8.1:16491119-16491138 | None:intergenic | 35.0% | |
| TTTGATTCAGCCAAGCTTTA+CGG | + | chr8.1:16490746-16490765 | None:intergenic | 35.0% | |
| ! | AAGGTGTTATCTTTGTCATC+AGG | + | chr8.1:16490666-16490685 | None:intergenic | 35.0% |
| ! | ATATTTGTTGCTGTCGAAGA+AGG | - | chr8.1:16491322-16491341 | MS.gene061738:CDS | 35.0% |
| ! | CTCGAATTTTGCTTCTTACT+GGG | - | chr8.1:16490799-16490818 | MS.gene061738:CDS | 35.0% |
| ! | CTTTGGATTTGCTTGATGTT+TGG | - | chr8.1:16491192-16491211 | MS.gene061738:CDS | 35.0% |
| ! | GAACAAAACTAGGGTATTCA+GGG | + | chr8.1:16490770-16490789 | None:intergenic | 35.0% |
| ! | TCATGGATTGCTATCAATAC+TGG | - | chr8.1:16491140-16491159 | MS.gene061738:CDS | 35.0% |
| ! | TGGTTTCTTCGATCATGTTT+TGG | + | chr8.1:16490599-16490618 | None:intergenic | 35.0% |
| ! | TTTTGACGGCTAATCTTAAG+GGG | - | chr8.1:16491261-16491280 | MS.gene061738:CDS | 35.0% |
| !! | ATGATTGAGAAGTATCATCC+GGG | - | chr8.1:16491428-16491447 | MS.gene061738:CDS | 35.0% |
| !! | GATGATTGAGAAGTATCATC+CGG | - | chr8.1:16491427-16491446 | MS.gene061738:CDS | 35.0% |
| !! | GATTTTGACGGCTAATCTTA+AGG | - | chr8.1:16491259-16491278 | MS.gene061738:CDS | 35.0% |
| AATCAGGTGCTCAAACTCTA+CGG | - | chr8.1:16491575-16491594 | MS.gene061738:CDS | 40.0% | |
| ACCAAATCCACTCAACTTCA+GGG | + | chr8.1:16491007-16491026 | None:intergenic | 40.0% | |
| ATTGGGTTATCACAAGGCTT+AGG | + | chr8.1:16490831-16490850 | None:intergenic | 40.0% | |
| ATTTGCATGGTTATTGGGCT+GGG | - | chr8.1:16491384-16491403 | MS.gene061738:CDS | 40.0% | |
| CATCTTGATATGGAGTTAGC+TGG | - | chr8.1:16490936-16490955 | MS.gene061738:CDS | 40.0% | |
| CCCACAAAATGAGTCACAAA+CGG | + | chr8.1:16491473-16491492 | None:intergenic | 40.0% | |
| CTTTGTCATCAGGATCAGAT+GGG | + | chr8.1:16490656-16490675 | None:intergenic | 40.0% | |
| GCTTTACCTCGAACAAAACT+AGG | + | chr8.1:16490780-16490799 | None:intergenic | 40.0% | |
| GGGCTAAATTGCCTATGATT+AGG | - | chr8.1:16490964-16490983 | MS.gene061738:CDS | 40.0% | |
| TACTAAGACACCTCTCAACA+GGG | + | chr8.1:16491526-16491545 | None:intergenic | 40.0% | |
| TAGGAATTGTCAGTGGTCTT+TGG | - | chr8.1:16491175-16491194 | MS.gene061738:CDS | 40.0% | |
| TATTTGCATGGTTATTGGGC+TGG | - | chr8.1:16491383-16491402 | MS.gene061738:CDS | 40.0% | |
| TCTTTGTCATCAGGATCAGA+TGG | + | chr8.1:16490657-16490676 | None:intergenic | 40.0% | |
| ! | AACTGGTCTACAAACTCCAA+AGG | + | chr8.1:16491662-16491681 | None:intergenic | 40.0% |
| ! | AAGCCTTGTGATAACCCAAT+TGG | - | chr8.1:16490831-16490850 | MS.gene061738:CDS | 40.0% |
| ! | AATCCCAATCCGAGATTTTG+GGG | + | chr8.1:16490719-16490738 | None:intergenic | 40.0% |
| ! | AGAATCCCAATCCGAGATTT+TGG | + | chr8.1:16490721-16490740 | None:intergenic | 40.0% |
| ! | AGCCTTGTGATAACCCAATT+GGG | - | chr8.1:16490832-16490851 | MS.gene061738:CDS | 40.0% |
| ! | CCGTTTGTGACTCATTTTGT+GGG | - | chr8.1:16491470-16491489 | MS.gene061738:CDS | 40.0% |
| ! | CGAACAAAACTAGGGTATTC+AGG | + | chr8.1:16490771-16490790 | None:intergenic | 40.0% |
| ! | GAATCCCAATCCGAGATTTT+GGG | + | chr8.1:16490720-16490739 | None:intergenic | 40.0% |
| ! | GCTCGAATTTTGCTTCTTAC+TGG | - | chr8.1:16490798-16490817 | MS.gene061738:CDS | 40.0% |
| ! | TGTTGTTTGAGCAGAAGTCA+TGG | - | chr8.1:16491123-16491142 | MS.gene061738:CDS | 40.0% |
| !! | AGAAGTATCATCCGGGATTA+GGG | - | chr8.1:16491435-16491454 | MS.gene061738:CDS | 40.0% |
| !!! | GAATACCCTAGTTTTGTTCG+AGG | - | chr8.1:16490771-16490790 | MS.gene061738:CDS | 40.0% |
| ATCAGGTGCTCAAACTCTAC+GGG | - | chr8.1:16491576-16491595 | MS.gene061738:CDS | 45.0% | |
| ATGGTGATTACCCTGTTGAG+AGG | - | chr8.1:16491513-16491532 | MS.gene061738:CDS | 45.0% | |
| CACCAAATCCACTCAACTTC+AGG | + | chr8.1:16491008-16491027 | None:intergenic | 45.0% | |
| CCAAGGGTAAAAGTGGCATT+TGG | + | chr8.1:16490696-16490715 | None:intergenic | 45.0% | |
| CTACTAAGACACCTCTCAAC+AGG | + | chr8.1:16491527-16491546 | None:intergenic | 45.0% | |
| CTTGATGTTTGGGCTCCTAT+GGG | - | chr8.1:16491203-16491222 | MS.gene061738:CDS | 45.0% | |
| GAAGGAGAAGTGGATGGATA+AGG | - | chr8.1:16491340-16491359 | MS.gene061738:CDS | 45.0% | |
| GCCTTGTGATAACCCAATTG+GGG | - | chr8.1:16490833-16490852 | MS.gene061738:CDS | 45.0% | |
| GTGTCTTAGTAGCATGGAGA+GGG | - | chr8.1:16491535-16491554 | MS.gene061738:CDS | 45.0% | |
| TCCCCAATTGGGTTATCACA+AGG | + | chr8.1:16490837-16490856 | None:intergenic | 45.0% | |
| TGATCATCCGCTTCAAAAGC+CGG | + | chr8.1:16491290-16491309 | None:intergenic | 45.0% | |
| TGTAAGCCGTGTGGAAGTTA+TGG | - | chr8.1:16491494-16491513 | MS.gene061738:CDS | 45.0% | |
| ! | ACCCTGAAGTTGAGTGGATT+TGG | - | chr8.1:16491003-16491022 | MS.gene061738:CDS | 45.0% |
| ! | AGAGGCGGGAAAGATTTTGA+CGG | - | chr8.1:16491247-16491266 | MS.gene061738:CDS | 45.0% |
| ! | CTGAAGTTGAGTGGATTTGG+TGG | - | chr8.1:16491006-16491025 | MS.gene061738:CDS | 45.0% |
| ! | GAAGTATCATCCGGGATTAG+GGG | - | chr8.1:16491436-16491455 | MS.gene061738:CDS | 45.0% |
| ! | GCCGTTTGTGACTCATTTTG+TGG | - | chr8.1:16491469-16491488 | MS.gene061738:CDS | 45.0% |
| !! | AGTTGAGTGGATTTGGTGGA+TGG | - | chr8.1:16491010-16491029 | MS.gene061738:CDS | 45.0% |
| !! | GAGAAGTATCATCCGGGATT+AGG | - | chr8.1:16491434-16491453 | MS.gene061738:CDS | 45.0% |
| !! | TGAGAGGTGTCTTAGTAGCA+TGG | - | chr8.1:16491529-16491548 | MS.gene061738:CDS | 45.0% |
| !! | TTGGAGTTTGTTGCTGTGGT+TGG | + | chr8.1:16490435-16490454 | None:intergenic | 45.0% |
| !!! | CATGTTTTGGTTAACGGCGT+CGG | + | chr8.1:16490586-16490605 | None:intergenic | 45.0% |
| !!! | CCAAATGCCACTTTTACCCT+TGG | - | chr8.1:16490693-16490712 | MS.gene061738:CDS | 45.0% |
| CTCGTCTTACGTGGCACTAT+CGG | - | chr8.1:16490537-16490556 | MS.gene061738:CDS | 50.0% | |
| GCTTGATGTTTGGGCTCCTA+TGG | - | chr8.1:16491202-16491221 | MS.gene061738:CDS | 50.0% | |
| GGCTAATCTTAAGGGGAGAC+CGG | - | chr8.1:16491268-16491287 | MS.gene061738:CDS | 50.0% | |
| GGGATTCTGACCGTAAAGCT+TGG | - | chr8.1:16490733-16490752 | MS.gene061738:CDS | 50.0% | |
| GGGTTATCACAAGGCTTAGG+AGG | + | chr8.1:16490828-16490847 | None:intergenic | 50.0% | |
| GGTGTCTTAGTAGCATGGAG+AGG | - | chr8.1:16491534-16491553 | MS.gene061738:CDS | 50.0% | |
| GTCGAAGAAGGAGAAGTGGA+TGG | - | chr8.1:16491334-16491353 | MS.gene061738:CDS | 50.0% | |
| TACCCTTGGCCCCAAAATCT+CGG | - | chr8.1:16490707-16490726 | MS.gene061738:CDS | 50.0% | |
| TCCAACAGCAAAAACCGTCG+TGG | - | chr8.1:16490450-16490469 | MS.gene061738:CDS | 50.0% | |
| TCTTCCCTGACAGGACCTTT+CGG | + | chr8.1:16491230-16491249 | None:intergenic | 50.0% | |
| TGCTCAAACTCTACGGGTTC+AGG | - | chr8.1:16491582-16491601 | MS.gene061738:CDS | 50.0% | |
| TGCTGTCGAAGAAGGAGAAG+TGG | - | chr8.1:16491330-16491349 | MS.gene061738:CDS | 50.0% | |
| TGGCCCCAAAATCTCGGATT+GGG | - | chr8.1:16490713-16490732 | MS.gene061738:CDS | 50.0% | |
| TGTCACACCCTGAAGTTGAG+TGG | - | chr8.1:16490997-16491016 | MS.gene061738:CDS | 50.0% | |
| TTGAGATCTGACGACCACGA+CGG | + | chr8.1:16490467-16490486 | None:intergenic | 50.0% | |
| TTGGCCCCAAAATCTCGGAT+TGG | - | chr8.1:16490712-16490731 | MS.gene061738:CDS | 50.0% | |
| ! | TTTGGGGCCAAGGGTAAAAG+TGG | + | chr8.1:16490703-16490722 | None:intergenic | 50.0% |
| ! | TTTGTGGGTTGTAAGCCGTG+TGG | - | chr8.1:16491485-16491504 | MS.gene061738:CDS | 50.0% |
| !! | ACCACGACGGTTTTTGCTGT+TGG | + | chr8.1:16490454-16490473 | None:intergenic | 50.0% |
| !! | ATTGGGCTGGGTTGGTTGAT+CGG | - | chr8.1:16491396-16491415 | MS.gene061738:CDS | 50.0% |
| !! | GCTGTTGGAGTTTGTTGCTG+TGG | + | chr8.1:16490439-16490458 | None:intergenic | 50.0% |
| !! | TGGGTTGGTTGATCGGTATG+AGG | - | chr8.1:16491403-16491422 | MS.gene061738:CDS | 50.0% |
| !!! | AATCCGAGATTTTGGGGCCA+AGG | + | chr8.1:16490713-16490732 | None:intergenic | 50.0% |
| !!! | ATCCGAGATTTTGGGGCCAA+GGG | + | chr8.1:16490712-16490731 | None:intergenic | 50.0% |
| ACAGGACCTTTCGGACCCAT+AGG | + | chr8.1:16491221-16491240 | None:intergenic | 55.0% | |
| AGGATCAGATGGGTCAGCGT+CGG | + | chr8.1:16490646-16490665 | None:intergenic | 55.0% | |
| AGTGCCACGTAAGACGAGGA+TGG | + | chr8.1:16490535-16490554 | None:intergenic | 55.0% | |
| ATCCGGGATTAGGGGATGAG+AGG | - | chr8.1:16491444-16491463 | MS.gene061738:CDS | 55.0% | |
| ATCGGATCTCGGCGATGATG+CGG | + | chr8.1:16490623-16490642 | None:intergenic | 55.0% | |
| CACAACAGAAGCAGCAGTGC+AGG | - | chr8.1:16490405-16490424 | MS.gene061738:CDS | 55.0% | |
| CACCTCTCATCCCCTAATCC+CGG | + | chr8.1:16491449-16491468 | None:intergenic | 55.0% | |
| CGATAGTGCCACGTAAGACG+AGG | + | chr8.1:16490539-16490558 | None:intergenic | 55.0% | |
| CGTCGGAGTCGGAAGAAATG+AGG | + | chr8.1:16490569-16490588 | None:intergenic | 55.0% | |
| GAAAGGTCCTGTCAGGGAAG+AGG | - | chr8.1:16491229-16491248 | MS.gene061738:CDS | 55.0% | |
| GTCACCATCCTCGTCTTACG+TGG | - | chr8.1:16490528-16490547 | MS.gene061738:CDS | 55.0% | |
| ! | GCATGGTTATTGGGCTGGGT+TGG | - | chr8.1:16491388-16491407 | MS.gene061738:CDS | 55.0% |
| ! | TTGGTTAACGGCGTCGGAGT+CGG | + | chr8.1:16490580-16490599 | None:intergenic | 55.0% |
| AGGTCCTGTCAGGGAAGAGG+CGG | - | chr8.1:16491232-16491251 | MS.gene061738:CDS | 60.0% | |
| CGGGATTAGGGGATGAGAGG+TGG | - | chr8.1:16491447-16491466 | MS.gene061738:CDS | 60.0% | |
| GATCTCGGCGATGATGCGGT+TGG | + | chr8.1:16490619-16490638 | None:intergenic | 60.0% | |
| GGGTCCGAAAGGTCCTGTCA+GGG | - | chr8.1:16491223-16491242 | MS.gene061738:CDS | 60.0% | |
| TGGGCTCCTATGGGTCCGAA+AGG | - | chr8.1:16491212-16491231 | MS.gene061738:CDS | 60.0% | |
| TGGGTCCGAAAGGTCCTGTC+AGG | - | chr8.1:16491222-16491241 | MS.gene061738:CDS | 60.0% | |
| TTTCCCGCCTCTTCCCTGAC+AGG | + | chr8.1:16491239-16491258 | None:intergenic | 60.0% | |
| ! | CAGATGGGTCAGCGTCGGAT+CGG | + | chr8.1:16490641-16490660 | None:intergenic | 60.0% |
| ! | CTCTACGGGTTCAGGCATCG+CGG | - | chr8.1:16491590-16491609 | MS.gene061738:CDS | 60.0% |
| ! | GGATGGTGACGAAGCCACAG+AGG | + | chr8.1:16490518-16490537 | None:intergenic | 60.0% |
| ! | GTCAGCGTCGGATCGGATCT+CGG | + | chr8.1:16490634-16490653 | None:intergenic | 60.0% |
| !! | GGGGAGACCGGCTTTTGAAG+CGG | - | chr8.1:16491280-16491299 | MS.gene061738:CDS | 60.0% |
| GGTCCTGTCAGGGAAGAGGC+GGG | - | chr8.1:16491233-16491252 | MS.gene061738:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 16490381 | 16491727 | 16490381 | ID=MS.gene061738 |
| chr8.1 | mRNA | 16490381 | 16491727 | 16490381 | ID=MS.gene061738.t1;Parent=MS.gene061738 |
| chr8.1 | exon | 16490381 | 16491727 | 16490381 | ID=MS.gene061738.t1.exon1;Parent=MS.gene061738.t1 |
| chr8.1 | CDS | 16490381 | 16491727 | 16490381 | ID=cds.MS.gene061738.t1;Parent=MS.gene061738.t1 |
| Gene Sequence |
| Protein sequence |
