AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054178


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054178.t1 MTR_6g047750 97.619 336 8 0 1 336 327 662 0.0 684
MS.gene054178.t1 MTR_7g057230 56.176 340 130 5 4 335 328 656 5.21e-128 380
MS.gene054178.t1 MTR_3g089055 40.510 353 169 9 5 336 238 570 2.07e-76 245
MS.gene054178.t1 MTR_3g089055 40.510 353 169 9 5 336 233 565 2.38e-76 244
MS.gene054178.t1 MTR_1g029420 40.057 352 170 9 6 336 261 592 2.89e-72 234
MS.gene054178.t1 MTR_2g082090 36.919 344 194 7 5 336 247 579 7.38e-62 207
MS.gene054178.t1 MTR_3g056110 36.963 349 187 9 5 336 210 542 4.39e-61 204
MS.gene054178.t1 MTR_5g097480 36.034 358 178 12 5 336 212 544 7.33e-61 204
MS.gene054178.t1 MTR_2g026250 32.778 360 187 10 5 336 264 596 3.85e-55 189
MS.gene054178.t1 MTR_4g133660 34.000 350 194 9 5 335 211 542 4.41e-55 188
MS.gene054178.t1 MTR_5g094450 34.831 356 195 10 2 336 193 532 1.01e-53 184
MS.gene054178.t1 MTR_4g074310 41.919 198 74 4 1 195 30 189 2.43e-40 141
MS.gene054178.t1 MTR_3g065980 32.476 311 178 7 45 336 243 540 1.20e-36 139
MS.gene054178.t1 MTR_4g074320 62.500 96 33 1 4 96 90 185 1.94e-34 125
MS.gene054178.t1 MTR_8g442410 32.484 314 189 11 31 336 227 525 3.00e-34 132
MS.gene054178.t1 MTR_7g027190 32.781 302 177 9 41 336 392 673 4.64e-34 132
MS.gene054178.t1 MTR_4g104020 30.168 358 209 14 2 336 181 520 5.43e-31 122
MS.gene054178.t1 MTR_4g064150 25.723 346 233 7 5 335 396 732 6.86e-30 120
MS.gene054178.t1 MTR_4g064200 26.163 344 228 9 5 335 319 649 1.09e-28 117
MS.gene054178.t1 MTR_2g097467 26.667 345 224 10 5 335 324 653 9.41e-28 114
MS.gene054178.t1 MTR_4g064160 26.513 347 231 8 2 335 348 683 1.42e-27 114
MS.gene054178.t1 MTR_2g097410 26.000 350 231 11 2 335 403 740 5.32e-27 112
MS.gene054178.t1 MTR_2g097350 28.779 344 219 11 5 335 309 639 1.11e-26 110
MS.gene054178.t1 MTR_4g097080 26.966 356 222 10 2 336 165 503 2.82e-26 109
MS.gene054178.t1 MTR_2g097473 26.163 344 227 9 5 335 324 653 4.67e-26 109
MS.gene054178.t1 MTR_2g097463 27.076 277 184 6 68 335 387 654 1.34e-25 107
MS.gene054178.t1 MTR_2g097390 25.948 343 230 9 5 335 310 640 7.37e-25 105
MS.gene054178.t1 MTR_4g102790 31.481 270 164 10 75 335 404 661 2.10e-24 104
MS.gene054178.t1 MTR_2g097310 26.712 292 196 7 51 335 357 637 7.13e-24 102
MS.gene054178.t1 MTR_4g064180 22.832 346 243 7 3 333 287 623 7.95e-23 99.8
MS.gene054178.t1 MTR_7g074650 28.940 349 206 13 3 336 471 792 1.11e-22 99.4
MS.gene054178.t1 MTR_4g064120 23.055 347 243 8 2 333 286 623 1.57e-22 99.0
MS.gene054178.t1 MTR_7g062120 22.190 347 248 7 2 336 404 740 4.56e-22 97.4
MS.gene054178.t1 MTR_2g097380 24.260 338 213 8 5 335 259 560 5.14e-22 97.1
MS.gene054178.t1 MTR_5g015950 24.806 387 230 9 2 335 67 445 8.16e-20 90.1
MS.gene054178.t1 MTR_3g053270 24.806 387 230 9 2 335 67 445 8.16e-20 90.1
MS.gene054178.t1 MTR_2g034260 28.826 281 171 9 69 336 320 584 1.44e-18 87.0
MS.gene054178.t1 MTR_2g034250 28.520 277 166 10 75 336 326 585 4.80e-18 85.5
MS.gene054178.t1 MTR_4g076140 25.779 353 198 10 41 336 124 469 6.32e-18 84.7
MS.gene054178.t1 MTR_1g069725 25.987 304 198 10 39 335 179 462 7.88e-18 84.3
MS.gene054178.t1 MTR_3g022830 24.277 346 184 12 50 336 110 436 2.55e-17 82.8
MS.gene054178.t1 MTR_5g009080 23.209 349 195 7 50 336 141 478 7.07e-17 81.6
MS.gene054178.t1 MTR_2g034280 29.091 275 166 10 75 336 317 575 9.85e-17 81.3
MS.gene054178.t1 MTR_1g096030 29.193 322 174 12 47 336 160 459 4.16e-16 79.3
MS.gene054178.t1 MTR_7g109580 27.574 272 171 8 75 336 299 554 5.11e-16 79.3
MS.gene054178.t1 MTR_5g015490 24.148 352 239 9 4 336 148 490 2.66e-14 73.9
MS.gene054178.t1 MTR_4g076020 26.936 297 175 12 47 336 168 429 5.71e-14 72.8
MS.gene054178.t1 MTR_3g072710 26.752 314 187 13 41 335 210 499 1.51e-13 71.6
MS.gene054178.t1 MTR_5g058860 25.352 355 226 13 5 335 157 496 1.44e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054178.t1 AT5G52510 55.367 354 126 8 2 336 300 640 3.71e-122 365
MS.gene054178.t1 AT1G21450 37.746 355 183 9 2 336 257 593 9.70e-66 218
MS.gene054178.t1 AT2G04890 37.209 344 186 10 5 336 88 413 1.73e-63 207
MS.gene054178.t1 AT5G48150 39.130 322 166 8 26 336 188 490 1.70e-61 204
MS.gene054178.t1 AT5G48150 39.130 322 166 8 26 336 188 490 1.70e-61 204
MS.gene054178.t1 AT5G48150 39.130 322 166 8 26 336 188 490 1.70e-61 204
MS.gene054178.t1 AT5G48150 39.130 322 166 8 26 336 188 490 1.70e-61 204
MS.gene054178.t1 AT1G50600 35.159 347 196 8 5 336 194 526 1.20e-54 187
MS.gene054178.t1 AT1G50600 35.159 347 196 8 5 336 265 597 3.53e-54 187
MS.gene054178.t1 AT1G50600 35.227 352 189 9 5 336 269 601 3.64e-54 187
MS.gene054178.t1 AT4G17230 34.294 347 199 8 5 336 193 525 1.50e-52 181
MS.gene054178.t1 AT4G17230 34.294 347 199 8 5 336 193 525 1.50e-52 181
MS.gene054178.t1 AT2G01570 34.122 296 180 6 45 336 297 581 9.31e-39 145
MS.gene054178.t1 AT1G14920 30.702 342 208 9 5 336 207 529 4.53e-38 142
MS.gene054178.t1 AT3G03450 32.886 298 182 6 45 336 260 545 1.82e-37 141
MS.gene054178.t1 AT1G66350 32.323 297 178 8 45 336 228 506 4.09e-35 134
MS.gene054178.t1 AT5G59450 27.089 347 228 7 5 336 262 598 7.52e-35 134
MS.gene054178.t1 AT5G17490 32.423 293 178 7 50 336 238 516 8.20e-35 133
MS.gene054178.t1 AT2G29060 28.116 345 225 10 5 335 319 654 1.63e-32 128
MS.gene054178.t1 AT2G29060 28.116 345 225 10 5 335 356 691 1.63e-32 128
MS.gene054178.t1 AT1G07530 26.074 349 231 11 2 335 428 764 6.42e-31 123
MS.gene054178.t1 AT3G46600 25.284 352 230 8 2 336 36 371 6.20e-30 117
MS.gene054178.t1 AT3G46600 25.284 352 230 8 2 336 212 547 8.04e-29 117
MS.gene054178.t1 AT3G46600 25.284 352 230 8 2 336 244 579 1.25e-28 116
MS.gene054178.t1 AT2G29065 26.271 354 231 11 2 335 284 627 6.37e-28 114
MS.gene054178.t1 AT1G07520 24.786 351 239 9 2 335 186 528 2.97e-26 109
MS.gene054178.t1 AT1G07520 24.786 351 239 9 2 335 186 528 2.97e-26 109
MS.gene054178.t1 AT1G07520 24.786 351 239 9 2 335 350 692 5.34e-26 109
MS.gene054178.t1 AT1G07520 24.786 351 239 9 2 335 351 693 5.45e-26 109
MS.gene054178.t1 AT5G66770 32.000 300 175 11 51 336 300 584 1.74e-24 104
MS.gene054178.t1 AT3G50650 32.673 303 173 14 51 336 254 542 2.87e-24 103
MS.gene054178.t1 AT2G37650 24.716 352 231 9 2 336 367 701 3.82e-23 100
MS.gene054178.t1 AT2G37650 24.716 352 231 9 2 336 379 713 3.85e-23 100
MS.gene054178.t1 AT3G54220 30.405 296 176 13 47 335 377 649 4.63e-23 100
MS.gene054178.t1 AT3G49950 25.141 354 237 10 2 335 62 407 1.28e-20 92.4
MS.gene054178.t1 AT5G41920 27.401 354 210 17 2 336 75 400 1.36e-18 86.3
MS.gene054178.t1 AT4G37650 25.410 366 228 11 2 336 178 529 1.08e-17 84.3
MS.gene054178.t1 AT1G50420 32.258 155 94 3 188 336 330 479 1.01e-16 81.3
MS.gene054178.t1 AT1G55580 22.632 380 239 10 2 336 76 445 4.12e-15 76.3
MS.gene054178.t1 AT4G08250 26.948 308 193 12 43 335 186 476 3.39e-14 73.6
MS.gene054178.t1 AT1G63100 28.505 214 138 8 75 282 363 567 3.67e-14 73.9
MS.gene054178.t1 AT1G63100 28.505 214 138 8 75 282 388 592 3.81e-14 73.9

Find 77 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAGTTGACTCGCGAGTTAT+TGG 0.228199 6.1:-28585659 MS.gene054178:CDS
GGCTGCAAATCTCGCAATTC+TGG 0.228552 6.1:-28585944 MS.gene054178:CDS
TTGTTTCAAGGTTGGTTTCA+TGG 0.293135 6.1:-28585965 MS.gene054178:CDS
CCTGTTGTTGCGGAATTGTT+CGG 0.297926 6.1:-28586033 MS.gene054178:CDS
GGCGCGTGTTGCGGAGTCTT+GGG 0.309205 6.1:-28585458 MS.gene054178:CDS
CTGTTGTTGCGGAATTGTTC+GGG 0.326798 6.1:-28586032 MS.gene054178:CDS
GAATCTGAATTCGATGAATT+CGG 0.332765 6.1:-28586121 None:intergenic
CACTCACGGTTGCTTCTGTT+TGG 0.353225 6.1:-28585126 MS.gene054178:CDS
TGGCGCGTGTTGCGGAGTCT+TGG 0.359860 6.1:-28585459 MS.gene054178:CDS
TGGTATTTGCTTTGGTTGGA+TGG 0.365888 6.1:-28585155 MS.gene054178:CDS
GAGTCGAAAATTGTGTAATT+TGG 0.380694 6.1:-28585368 MS.gene054178:CDS
AGCGCGTGAGGCGGCGCGTG+AGG 0.389779 6.1:-28585827 MS.gene054178:CDS
GAGTTGACTCGCGAGTTATT+GGG 0.392816 6.1:-28585658 MS.gene054178:CDS
GCGTGAGGGGTTTAAGTTGA+AGG 0.417985 6.1:-28585812 MS.gene054178:CDS
ATTAAGTCGCGACTCAATAT+CGG 0.419497 6.1:-28585229 MS.gene054178:CDS
GCGCGTGAGGCGGCGCGTGA+GGG 0.419954 6.1:-28585826 MS.gene054178:CDS
CAAGCGGAGAAGCTAAGAAT+TGG 0.420635 6.1:-28585724 MS.gene054178:CDS
ATGGCGCGCAAGGATGAGTA+TGG 0.425941 6.1:-28585296 MS.gene054178:CDS
TTTCGAGTTTCGATTTGTTT+CGG 0.428437 6.1:-28585701 MS.gene054178:CDS
GGAAAACTCGGTTTGTTTCA+AGG 0.430920 6.1:-28585977 MS.gene054178:CDS
TCCGTTGACACACTTTCATC+CGG 0.449000 6.1:+28585580 None:intergenic
TAACGAGTCGCGAGTTAACT+CGG 0.451482 6.1:-28585203 MS.gene054178:CDS
ATGGTGGTATTTGCTTTGGT+TGG 0.453307 6.1:-28585159 MS.gene054178:CDS
CGCTTTATGTGACTCGGTCG+AGG 0.459461 6.1:-28585425 MS.gene054178:CDS
CGCGCAAGGATGAGTATGGC+GGG 0.461869 6.1:-28585292 MS.gene054178:CDS
GTATAAGCTGAATAGAATTC+CGG 0.464091 6.1:-28585599 MS.gene054178:CDS
GAGAATGGTGGTATTTGCTT+TGG 0.464441 6.1:-28585163 MS.gene054178:CDS
GGTATTTGCTTTGGTTGGAT+GGG 0.465037 6.1:-28585154 MS.gene054178:CDS
GTTGAAGGTTGTTGCGGTGG+CGG 0.467280 6.1:-28585797 MS.gene054178:CDS
CCGAACAATTCCGCAACAAC+AGG 0.470616 6.1:+28586033 None:intergenic
TCAACGGTTAGCGAATTTCA+TGG 0.471865 6.1:-28586097 MS.gene054178:CDS
GTTGAAATCGAGGATGAATC+CGG 0.473635 6.1:-28586067 MS.gene054178:CDS
GTTGTTGCGGTGGCGGAGAA+CGG 0.484971 6.1:-28585790 MS.gene054178:CDS
AACTCGGTTTGTTTCAAGGT+TGG 0.489425 6.1:-28585973 MS.gene054178:CDS
CGCGTGAGGCGGCGCGTGAG+GGG 0.490221 6.1:-28585825 MS.gene054178:CDS
ATTTGGTGGCTTGTGAAGGT+AGG 0.494402 6.1:-28585351 MS.gene054178:CDS
TCAGTTGTTGTTGGAAAACT+CGG 0.502026 6.1:-28585989 MS.gene054178:CDS
TCGAAAATTGTGTAATTTGG+TGG 0.512098 6.1:-28585365 MS.gene054178:CDS
CGCGCTCAAAGCGCGTGAGG+CGG 0.514899 6.1:-28585836 MS.gene054178:CDS
CTCCCTCTTCAATCTTAACT+CGG 0.519596 6.1:+28585392 None:intergenic
TGAGTCGACTCAGTTGTTGT+TGG 0.533088 6.1:-28585998 MS.gene054178:CDS
CTCTTCAATCTTAACTCGGT+CGG 0.535606 6.1:+28585396 None:intergenic
GCGCGTGTTGCGGAGTCTTG+GGG 0.548940 6.1:-28585457 MS.gene054178:CDS
GACCGAGTTAAGATTGAAGA+GGG 0.549610 6.1:-28585394 MS.gene054178:CDS
TTTGGTGGCTTGTGAAGGTA+GGG 0.553999 6.1:-28585350 MS.gene054178:CDS
TTATTCCGCTTTATGTGACT+CGG 0.559717 6.1:-28585431 MS.gene054178:CDS
GAAACTCGCGCCGCGTGTTG+TGG 0.562154 6.1:-28585524 MS.gene054178:CDS
GAAGCTGCATTTGAAGAAAA+CGG 0.563799 6.1:-28585922 MS.gene054178:CDS
TGAAAATCCACCTGTTGTTG+CGG 0.565636 6.1:-28586043 MS.gene054178:CDS
AACGAGTCGCGAGTTAACTC+GGG 0.568702 6.1:-28585202 MS.gene054178:CDS
TCCGGATGAAAGTGTGTCAA+CGG 0.577258 6.1:-28585581 MS.gene054178:CDS
GTTTAAGTTGAAGGTTGTTG+CGG 0.578524 6.1:-28585803 MS.gene054178:CDS
AACAATTCCGCAACAACAGG+TGG 0.579323 6.1:+28586036 None:intergenic
CTCAGTGTGAAAGAAGAGAA+TGG 0.580110 6.1:-28585178 MS.gene054178:CDS
CTCGACCGAGTCACATAAAG+CGG 0.588841 6.1:+28585426 None:intergenic
TAAGTTGAAGGTTGTTGCGG+TGG 0.592167 6.1:-28585800 MS.gene054178:CDS
TGTAATTTGGTGGCTTGTGA+AGG 0.595457 6.1:-28585355 MS.gene054178:CDS
TGGTGAGAGCGTTGAAATCG+AGG 0.600312 6.1:-28586077 MS.gene054178:CDS
CGACCGAGTTAAGATTGAAG+AGG 0.601321 6.1:-28585395 MS.gene054178:CDS
TCACGCGCTCAAAGCGCGTG+AGG 0.611087 6.1:-28585839 MS.gene054178:CDS
TAGCGGTGGGTGAGATGTTG+AGG 0.615342 6.1:-28585750 MS.gene054178:CDS
ATTCGATGAATTCGGATCAA+CGG 0.621073 6.1:-28586113 None:intergenic
GTTGCGGTGGCGGAGAACGG+CGG 0.627141 6.1:-28585787 MS.gene054178:CDS
AAGGTAGGGATCGTGTCGAA+AGG 0.628894 6.1:-28585336 MS.gene054178:CDS
GCCGCGTGTTGTGGTTGTTG+TGG 0.629120 6.1:-28585515 MS.gene054178:CDS
TCCACAACAACCACAACACG+CGG 0.636009 6.1:+28585514 None:intergenic
GCGCGCAAGGATGAGTATGG+CGG 0.653133 6.1:-28585293 MS.gene054178:CDS
TGAGATGTTGAGGCTTCAAG+CGG 0.656124 6.1:-28585740 MS.gene054178:CDS
CGTCGCAAAAGTGTGTCACG+TGG 0.664510 6.1:+28585553 None:intergenic
TTGGATGGGAAGAACACTCA+CGG 0.668699 6.1:-28585140 MS.gene054178:CDS
GGATCGTGTCGAAAGGTGTG+AGG 0.671431 6.1:-28585329 MS.gene054178:CDS
GCGCAAGGATGAGTATGGCG+GGG 0.685055 6.1:-28585291 MS.gene054178:CDS
CGGTGATGATAGAGTGATAG+CGG 0.689852 6.1:-28585767 MS.gene054178:CDS
GAGTCGCGACTTAATCGACT+CGG 0.695155 6.1:+28585237 None:intergenic
TGATGATAGAGTGATAGCGG+TGG 0.709647 6.1:-28585764 MS.gene054178:CDS
GATGATAGAGTGATAGCGGT+GGG 0.720839 6.1:-28585763 MS.gene054178:CDS
AGTGTGAAAGAAGAGAATGG+TGG 0.746285 6.1:-28585175 MS.gene054178:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTGTAGTTGATTTTGAAAT+TGG - chr6.1:28585339-28585358 MS.gene054178:CDS 25.0%
GAGTCGAAAATTGTGTAATT+TGG - chr6.1:28585860-28585879 MS.gene054178:CDS 30.0%
GTATAAGCTGAATAGAATTC+CGG - chr6.1:28585629-28585648 MS.gene054178:CDS 30.0%
TCGAAAATTGTGTAATTTGG+TGG - chr6.1:28585863-28585882 MS.gene054178:CDS 30.0%
!! TTTCGAGTTTCGATTTGTTT+CGG - chr6.1:28585527-28585546 MS.gene054178:CDS 30.0%
!!! AGTTGATTTTGAAATTGGAC+AGG - chr6.1:28585344-28585363 MS.gene054178:CDS 30.0%
!!! GTTGATTTTGAAATTGGACA+GGG - chr6.1:28585345-28585364 MS.gene054178:CDS 30.0%
ATTAAGTCGCGACTCAATAT+CGG - chr6.1:28585999-28586018 MS.gene054178:CDS 35.0%
GAAGCTGCATTTGAAGAAAA+CGG - chr6.1:28585306-28585325 MS.gene054178:CDS 35.0%
TTATTCCGCTTTATGTGACT+CGG - chr6.1:28585797-28585816 MS.gene054178:CDS 35.0%
! TCAGTTGTTGTTGGAAAACT+CGG - chr6.1:28585239-28585258 MS.gene054178:CDS 35.0%
!! GTTTAAGTTGAAGGTTGTTG+CGG - chr6.1:28585425-28585444 MS.gene054178:CDS 35.0%
!! TTGTTTCAAGGTTGGTTTCA+TGG - chr6.1:28585263-28585282 MS.gene054178:CDS 35.0%
AGTGTGAAAGAAGAGAATGG+TGG - chr6.1:28586053-28586072 MS.gene054178:CDS 40.0%
ATGGTGGTATTTGCTTTGGT+TGG - chr6.1:28586069-28586088 MS.gene054178:CDS 40.0%
CTCAGTGTGAAAGAAGAGAA+TGG - chr6.1:28586050-28586069 MS.gene054178:CDS 40.0%
CTCCCTCTTCAATCTTAACT+CGG + chr6.1:28585839-28585858 None:intergenic 40.0%
CTCTTCAATCTTAACTCGGT+CGG + chr6.1:28585835-28585854 None:intergenic 40.0%
GACCGAGTTAAGATTGAAGA+GGG - chr6.1:28585834-28585853 MS.gene054178:CDS 40.0%
GAGAATGGTGGTATTTGCTT+TGG - chr6.1:28586065-28586084 MS.gene054178:CDS 40.0%
GGTATTTGCTTTGGTTGGAT+GGG - chr6.1:28586074-28586093 MS.gene054178:CDS 40.0%
GTTGAAATCGAGGATGAATC+CGG - chr6.1:28585161-28585180 MS.gene054178:CDS 40.0%
TCAACGGTTAGCGAATTTCA+TGG - chr6.1:28585131-28585150 MS.gene054178:CDS 40.0%
TGAAAATCCACCTGTTGTTG+CGG - chr6.1:28585185-28585204 MS.gene054178:CDS 40.0%
TGGTATTTGCTTTGGTTGGA+TGG - chr6.1:28586073-28586092 MS.gene054178:CDS 40.0%
! AACTCGGTTTGTTTCAAGGT+TGG - chr6.1:28585255-28585274 MS.gene054178:CDS 40.0%
! GGAAAACTCGGTTTGTTTCA+AGG - chr6.1:28585251-28585270 MS.gene054178:CDS 40.0%
! TGTAATTTGGTGGCTTGTGA+AGG - chr6.1:28585873-28585892 MS.gene054178:CDS 40.0%
!! ACAACAGGTGGATTTTCAAC+CGG + chr6.1:28585183-28585202 None:intergenic 40.0%
!!! TCGGCAACATTTTGACTCAT+TGG + chr6.1:28585975-28585994 None:intergenic 40.0%
AACAATTCCGCAACAACAGG+TGG + chr6.1:28585195-28585214 None:intergenic 45.0%
CAAGCGGAGAAGCTAAGAAT+TGG - chr6.1:28585504-28585523 MS.gene054178:CDS 45.0%
CCTGTTGTTGCGGAATTGTT+CGG - chr6.1:28585195-28585214 MS.gene054178:CDS 45.0%
CGACCGAGTTAAGATTGAAG+AGG - chr6.1:28585833-28585852 MS.gene054178:CDS 45.0%
CGGTGATGATAGAGTGATAG+CGG - chr6.1:28585461-28585480 MS.gene054178:CDS 45.0%
CTGTTGTTGCGGAATTGTTC+GGG - chr6.1:28585196-28585215 MS.gene054178:CDS 45.0%
TAACGAGTCGCGAGTTAACT+CGG - chr6.1:28586025-28586044 MS.gene054178:CDS 45.0%
TCCGTTGACACACTTTCATC+CGG + chr6.1:28585651-28585670 None:intergenic 45.0%
TGAGATGTTGAGGCTTCAAG+CGG - chr6.1:28585488-28585507 MS.gene054178:CDS 45.0%
TTGGATGGGAAGAACACTCA+CGG - chr6.1:28586088-28586107 MS.gene054178:CDS 45.0%
! ATTTGGTGGCTTGTGAAGGT+AGG - chr6.1:28585877-28585896 MS.gene054178:CDS 45.0%
! TAAGTTGAAGGTTGTTGCGG+TGG - chr6.1:28585428-28585447 MS.gene054178:CDS 45.0%
! TCCGGATGAAAGTGTGTCAA+CGG - chr6.1:28585647-28585666 MS.gene054178:CDS 45.0%
! TGAGTCGACTCAGTTGTTGT+TGG - chr6.1:28585230-28585249 MS.gene054178:CDS 45.0%
! TTTGGTGGCTTGTGAAGGTA+GGG - chr6.1:28585878-28585897 MS.gene054178:CDS 45.0%
!! GAGTTGACTCGCGAGTTATT+GGG - chr6.1:28585570-28585589 MS.gene054178:CDS 45.0%
!! GATGATAGAGTGATAGCGGT+GGG - chr6.1:28585465-28585484 MS.gene054178:CDS 45.0%
!! GTCGAAAGGTGTGAGGTTTT+TGG - chr6.1:28585906-28585925 MS.gene054178:CDS 45.0%
!! TGATGATAGAGTGATAGCGG+TGG - chr6.1:28585464-28585483 MS.gene054178:CDS 45.0%
!!! GGTGTGAGGTTTTTGGCAAA+TGG - chr6.1:28585913-28585932 MS.gene054178:CDS 45.0%
AACGAGTCGCGAGTTAACTC+GGG - chr6.1:28586026-28586045 MS.gene054178:CDS 50.0%
AAGGTAGGGATCGTGTCGAA+AGG - chr6.1:28585892-28585911 MS.gene054178:CDS 50.0%
CACTCACGGTTGCTTCTGTT+TGG - chr6.1:28586102-28586121 MS.gene054178:CDS 50.0%
CCGAACAATTCCGCAACAAC+AGG + chr6.1:28585198-28585217 None:intergenic 50.0%
CTCGACCGAGTCACATAAAG+CGG + chr6.1:28585805-28585824 None:intergenic 50.0%
GAGTCGCGACTTAATCGACT+CGG + chr6.1:28585994-28586013 None:intergenic 50.0%
GGCTGCAAATCTCGCAATTC+TGG - chr6.1:28585284-28585303 MS.gene054178:CDS 50.0%
TCCACAACAACCACAACACG+CGG + chr6.1:28585717-28585736 None:intergenic 50.0%
!! CGAGTTGACTCGCGAGTTAT+TGG - chr6.1:28585569-28585588 MS.gene054178:CDS 50.0%
!! GCGTGAGGGGTTTAAGTTGA+AGG - chr6.1:28585416-28585435 MS.gene054178:CDS 50.0%
!! TGGTGAGAGCGTTGAAATCG+AGG - chr6.1:28585151-28585170 MS.gene054178:CDS 50.0%
!! TTGTAACACCGCGCCGTTTT+TGG - chr6.1:28585749-28585768 MS.gene054178:CDS 50.0%
!! TTTTTGGCAAATGGCGCGCA+AGG - chr6.1:28585922-28585941 MS.gene054178:CDS 50.0%
ATGGCGCGCAAGGATGAGTA+TGG - chr6.1:28585932-28585951 MS.gene054178:CDS 55.0%
GTTGAAGGTTGTTGCGGTGG+CGG - chr6.1:28585431-28585450 MS.gene054178:CDS 55.0%
TAGCGGTGGGTGAGATGTTG+AGG - chr6.1:28585478-28585497 MS.gene054178:CDS 55.0%
TCCGCAACACGCGCCAAAAA+CGG + chr6.1:28585765-28585784 None:intergenic 55.0%
! CGTCGCAAAAGTGTGTCACG+TGG + chr6.1:28585678-28585697 None:intergenic 55.0%
! GGATCGTGTCGAAAGGTGTG+AGG - chr6.1:28585899-28585918 MS.gene054178:CDS 55.0%
!! CGCTTTATGTGACTCGGTCG+AGG - chr6.1:28585803-28585822 MS.gene054178:CDS 55.0%
AACACGCGCCAAAAACGGCG+CGG + chr6.1:28585760-28585779 None:intergenic 60.0%
CGCGCAAGGATGAGTATGGC+GGG - chr6.1:28585936-28585955 MS.gene054178:CDS 60.0%
GCCGCGTGTTGTGGTTGTTG+TGG - chr6.1:28585713-28585732 MS.gene054178:CDS 60.0%
GCGCAAGGATGAGTATGGCG+GGG - chr6.1:28585937-28585956 MS.gene054178:CDS 60.0%
GCGCGCAAGGATGAGTATGG+CGG - chr6.1:28585935-28585954 MS.gene054178:CDS 60.0%
!! GTTGTTGCGGTGGCGGAGAA+CGG - chr6.1:28585438-28585457 MS.gene054178:CDS 60.0%
!!! GCCGTTTTTGGCGCGTGTTG+CGG - chr6.1:28585761-28585780 MS.gene054178:CDS 60.0%
GAAACTCGCGCCGCGTGTTG+TGG - chr6.1:28585704-28585723 MS.gene054178:CDS 65.0%
GCGCGTGTTGCGGAGTCTTG+GGG - chr6.1:28585771-28585790 MS.gene054178:CDS 65.0%
GGCGCGTGTTGCGGAGTCTT+GGG - chr6.1:28585770-28585789 MS.gene054178:CDS 65.0%
TCACGCGCTCAAAGCGCGTG+AGG - chr6.1:28585389-28585408 MS.gene054178:CDS 65.0%
TGGCGCGTGTTGCGGAGTCT+TGG - chr6.1:28585769-28585788 MS.gene054178:CDS 65.0%
CGCGCTCAAAGCGCGTGAGG+CGG - chr6.1:28585392-28585411 MS.gene054178:CDS 70.0%
!! GTTGCGGTGGCGGAGAACGG+CGG - chr6.1:28585441-28585460 MS.gene054178:CDS 70.0%
! AGCGCGTGAGGCGGCGCGTG+AGG - chr6.1:28585401-28585420 MS.gene054178:CDS 80.0%
! CGCGTGAGGCGGCGCGTGAG+GGG - chr6.1:28585403-28585422 MS.gene054178:CDS 80.0%
! GCGCGTGAGGCGGCGCGTGA+GGG - chr6.1:28585402-28585421 MS.gene054178:CDS 80.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 28585120 28586130 28585120 ID=MS.gene054178
chr6.1 mRNA 28585120 28586130 28585120 ID=MS.gene054178.t1;Parent=MS.gene054178
chr6.1 exon 28585120 28586130 28585120 ID=MS.gene054178.t1.exon1;Parent=MS.gene054178.t1
chr6.1 CDS 28585120 28586130 28585120 ID=cds.MS.gene054178.t1;Parent=MS.gene054178.t1
Gene Sequence

>MS.gene054178

ATGAATTCGGATCAACGGTTAGCGAATTTCATGGTGAGAGCGTTGAAATCGAGGATGAATCCGGTTGAAAATCCACCTGTTGTTGCGGAATTGTTCGGGAGAGAACATGCTGAGTCGACTCAGTTGTTGTTGGAAAACTCGGTTTGTTTCAAGGTTGGTTTCATGGCTGCAAATCTCGCAATTCTGGAAGCTGCATTTGAAGAAAACGGTAACAGTTTCTGTGTAGTTGATTTTGAAATTGGACAGGGAAAACAGTATGTGAATCTTCTTCACGCGCTCAAAGCGCGTGAGGCGGCGCGTGAGGGGTTTAAGTTGAAGGTTGTTGCGGTGGCGGAGAACGGCGGTGATGATAGAGTGATAGCGGTGGGTGAGATGTTGAGGCTTCAAGCGGAGAAGCTAAGAATTGGTTTCGAGTTTCGATTTGTTTCGGTGTCTCAGAGACAAGTCTACGAGTTGACTCGCGAGTTATTGGGATGTGATGTTGAAGAGACAGTAATTGTGAATTTCGCGTATAAGCTGAATAGAATTCCGGATGAAAGTGTGTCAACGGAGAATCCACGTGACACACTTTTGCGACGCGTGAAGAAACTCGCGCCGCGTGTTGTGGTTGTTGTGGAGCAAGAAATGAATTGTAACACCGCGCCGTTTTTGGCGCGTGTTGCGGAGTCTTGGGGTTATTATTCCGCTTTATGTGACTCGGTCGAGGAAAATTCCGACCGAGTTAAGATTGAAGAGGGAGTGAGTCGAAAATTGTGTAATTTGGTGGCTTGTGAAGGTAGGGATCGTGTCGAAAGGTGTGAGGTTTTTGGCAAATGGCGCGCAAGGATGAGTATGGCGGGGTTTAAGATGAAACCAATGAGTCAAAATGTTGCCGAGTCGATTAAGTCGCGACTCAATATCGGTAATAACGAGTCGCGAGTTAACTCGGGACTCAGTGTGAAAGAAGAGAATGGTGGTATTTGCTTTGGTTGGATGGGAAGAACACTCACGGTTGCTTCTGTTTGGCGTTAA

Protein sequence

>MS.gene054178.t1

MNSDQRLANFMVRALKSRMNPVENPPVVAELFGREHAESTQLLLENSVCFKVGFMAANLAILEAAFEENGNSFCVVDFEIGQGKQYVNLLHALKAREAAREGFKLKVVAVAENGGDDRVIAVGEMLRLQAEKLRIGFEFRFVSVSQRQVYELTRELLGCDVEETVIVNFAYKLNRIPDESVSTENPRDTLLRRVKKLAPRVVVVVEQEMNCNTAPFLARVAESWGYYSALCDSVEENSDRVKIEEGVSRKLCNLVACEGRDRVERCEVFGKWRARMSMAGFKMKPMSQNVAESIKSRLNIGNNESRVNSGLSVKEENGGICFGWMGRTLTVASVWR