Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06189.t1 | XP_003630627.1 | 98.4 | 437 | 7 | 0 | 6 | 442 | 1 | 437 | 4.80E-245 | 856.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06189.t1 | Q8VYG2 | 65.0 | 432 | 140 | 2 | 11 | 442 | 3 | 423 | 5.2e-155 | 548.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06189.t1 | G7LJJ0 | 98.4 | 437 | 7 | 0 | 6 | 442 | 1 | 437 | 3.5e-245 | 856.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049887 | MS.gene06189 | 0.85827 | 9.25E-63 | -1.69E-46 |
| MS.gene053144 | MS.gene06189 | 0.824415 | 8.17E-54 | -1.69E-46 |
| MS.gene054584 | MS.gene06189 | 0.806932 | 6.47E-50 | -1.69E-46 |
| MS.gene058852 | MS.gene06189 | 0.804084 | 2.56E-49 | -1.69E-46 |
| MS.gene059171 | MS.gene06189 | 0.826249 | 3.01E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06189.t1 | MTR_8g101540 | 98.398 | 437 | 7 | 0 | 6 | 442 | 1 | 437 | 0.0 | 894 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06189.t1 | AT3G10700 | 64.815 | 432 | 141 | 2 | 11 | 442 | 3 | 423 | 0.0 | 548 |
| MS.gene06189.t1 | AT3G10700 | 63.812 | 362 | 120 | 2 | 81 | 442 | 5 | 355 | 2.06e-154 | 442 |
| MS.gene06189.t1 | AT3G10700 | 64.907 | 322 | 102 | 2 | 11 | 332 | 3 | 313 | 5.91e-138 | 398 |
Find 102 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGATTGAGAATGAATATT+TGG | 0.148149 | 4.2:-3441955 | MS.gene06189:CDS |
| CCCTATCGAATTTGTCCTTT+GGG | 0.178205 | 4.2:-3444829 | MS.gene06189:CDS |
| AAAATGTTGCTGGCTCTTTC+TGG | 0.184400 | 4.2:-3440473 | MS.gene06189:CDS |
| ACGGGAAGTTTAGAAGATTT+TGG | 0.201422 | 4.2:-3438509 | MS.gene06189:CDS |
| TTGAGAGCTCCTGGTGTATT+GGG | 0.238575 | 4.2:-3436955 | MS.gene06189:CDS |
| GAAATAATGCTCTGCTCTTT+TGG | 0.241028 | 4.2:+3438677 | None:intergenic |
| AGCCACAGGAACAATGTAAT+TGG | 0.256134 | 4.2:-3443694 | MS.gene06189:CDS |
| CTTCTGGGGTTTACTCCTTC+TGG | 0.272838 | 4.2:-3444549 | MS.gene06189:CDS |
| TTTAGCTATGACAATCAATA+AGG | 0.279528 | 4.2:-3444577 | MS.gene06189:CDS |
| GGAATTCTCATCGCTGCTTC+TGG | 0.291132 | 4.2:-3438488 | MS.gene06189:CDS |
| GGGGCACGTTTCAGTGGTGC+TGG | 0.313834 | 4.2:-3436934 | MS.gene06189:CDS |
| ATTGAGAGCTCCTGGTGTAT+TGG | 0.326421 | 4.2:-3436956 | MS.gene06189:CDS |
| AATCAATAAGGGAATACTTC+TGG | 0.338568 | 4.2:-3444565 | MS.gene06189:CDS |
| TTCAAGGAGAAGTGAAGTTC+AGG | 0.341185 | 4.2:-3444220 | MS.gene06189:intron |
| CTACCAACCCCGGATATAAT+AGG | 0.344598 | 4.2:-3440433 | MS.gene06189:CDS |
| GCCCTATCGAATTTGTCCTT+TGG | 0.353442 | 4.2:-3444830 | MS.gene06189:CDS |
| TTGTAGTTTGTAATTCGTTC+AGG | 0.355824 | 4.2:-3444248 | MS.gene06189:intron |
| CCGTATATGCACTACAGAAT+AGG | 0.363557 | 4.2:-3443652 | MS.gene06189:CDS |
| CGTATATGCACTACAGAATA+GGG | 0.363640 | 4.2:-3443651 | MS.gene06189:CDS |
| CAATGTTTACAGGGTATCAT+TGG | 0.367185 | 4.2:-3442791 | MS.gene06189:intron |
| GCCACAGGAACAATGTAATT+GGG | 0.370262 | 4.2:-3443693 | MS.gene06189:CDS |
| TTGATTGAGAATGAATATTT+GGG | 0.370505 | 4.2:-3441954 | MS.gene06189:CDS |
| TTCAGTGGTGCTGGGTTTAG+AGG | 0.370802 | 4.2:-3436925 | MS.gene06189:CDS |
| TCTGATGGTCTGGACAGTTC+AGG | 0.372167 | 4.2:-3442755 | MS.gene06189:CDS |
| CCTATTCTGTAGTGCATATA+CGG | 0.381651 | 4.2:+3443652 | None:intergenic |
| GGAGTCGAGGCTTGGGAAAC+GGG | 0.384982 | 4.2:-3438527 | MS.gene06189:CDS |
| AATTAATTCTGCAGATCATC+TGG | 0.392142 | 4.2:-3439965 | MS.gene06189:intron |
| TGCAACTCGCCTATTATATC+CGG | 0.393949 | 4.2:+3440424 | None:intergenic |
| ATCAATAAGGGAATACTTCT+GGG | 0.405069 | 4.2:-3444564 | MS.gene06189:CDS |
| AGTAGCATACCTCTTAGCTT+TGG | 0.420578 | 4.2:-3442632 | MS.gene06189:CDS |
| CTGAAGCTGCATCATTTGTC+AGG | 0.428996 | 4.2:-3436867 | MS.gene06189:CDS |
| GAAAGCAGCTAAAATGTTGC+TGG | 0.429654 | 4.2:-3440483 | MS.gene06189:CDS |
| CTGAAAATATTGAATATGAT+AGG | 0.435242 | 4.2:-3442579 | MS.gene06189:intron |
| ATACACCAGGAGCTCTCAAT+AGG | 0.436295 | 4.2:+3436959 | None:intergenic |
| TTGTGAGCCTCATAAACTTC+CGG | 0.440960 | 4.2:+3439779 | None:intergenic |
| GGGCACGTTTCAGTGGTGCT+GGG | 0.443328 | 4.2:-3436933 | MS.gene06189:CDS |
| TTAGCTATGACAATCAATAA+GGG | 0.443756 | 4.2:-3444576 | MS.gene06189:CDS |
| TCTGACTAGCTAACTCGGGC+TGG | 0.445555 | 4.2:+3436827 | None:intergenic |
| TAATCCAGGAGTCGAGGCTT+GGG | 0.458763 | 4.2:-3438534 | MS.gene06189:intron |
| AGGAGTCGAGGCTTGGGAAA+CGG | 0.463752 | 4.2:-3438528 | MS.gene06189:CDS |
| GAGAGAGAAAGTTTCTCAAA+TGG | 0.464031 | 4.2:-3444890 | MS.gene06189:CDS |
| TGTACTCTTGCACCGTTGGC+CGG | 0.464779 | 4.2:+3440522 | None:intergenic |
| CATACGTGGTTCTGATGGTC+TGG | 0.468452 | 4.2:-3442765 | MS.gene06189:CDS |
| TTTGTCTTAGTAGTTTGCAC+TGG | 0.480855 | 4.2:+3443746 | None:intergenic |
| GCAACTCGCCTATTATATCC+GGG | 0.484604 | 4.2:+3440425 | None:intergenic |
| AGTTGCACCGGAAGTTTATG+AGG | 0.486774 | 4.2:-3439786 | MS.gene06189:CDS |
| TTGCATGTTCCAAAGCTAAG+AGG | 0.495586 | 4.2:+3442623 | None:intergenic |
| ATTCGTTCAGGACAGTTTCA+AGG | 0.498096 | 4.2:-3444236 | MS.gene06189:CDS |
| GCTTATCTGACTAGCTAACT+CGG | 0.498921 | 4.2:+3436822 | None:intergenic |
| ATTACATTGTTCCTGTGGCT+CGG | 0.509440 | 4.2:+3443697 | None:intergenic |
| TTAATCCAGGAGTCGAGGCT+TGG | 0.509901 | 4.2:-3438535 | MS.gene06189:intron |
| GAGATCCTATTGAGAGCTCC+TGG | 0.513071 | 4.2:-3436964 | MS.gene06189:CDS |
| TGAGAGCTCCTGGTGTATTG+GGG | 0.515368 | 4.2:-3436954 | MS.gene06189:CDS |
| GCGGAGCACATCCTGTCAAA+TGG | 0.519126 | 4.2:-3439932 | MS.gene06189:intron |
| AGAGAATTCTTCCGAGCCAC+AGG | 0.528821 | 4.2:-3443708 | MS.gene06189:CDS |
| CCTATCGAATTTGTCCTTTG+GGG | 0.530180 | 4.2:-3444828 | MS.gene06189:CDS |
| GTGCAAATTAGAACCCGATC+TGG | 0.532694 | 4.2:-3438700 | MS.gene06189:CDS |
| CTATCGAATTTGTCCTTTGG+GGG | 0.532892 | 4.2:-3444827 | MS.gene06189:CDS |
| TCAAATACTGACCATTTGAC+AGG | 0.535076 | 4.2:+3439921 | None:intergenic |
| TTGAAAGTAGTATAGCTGAT+TGG | 0.535673 | 4.2:+3441910 | None:intergenic |
| TCCATTCAAAATTATGAATG+TGG | 0.538112 | 4.2:-3438458 | MS.gene06189:intron |
| TTCTCATCGCTGCTTCTGGT+CGG | 0.543594 | 4.2:-3438484 | MS.gene06189:CDS |
| GAGAATATGCGTGTTATGAA+AGG | 0.544922 | 4.2:-3438651 | MS.gene06189:intron |
| CTGACTAGCTAACTCGGGCT+GGG | 0.547001 | 4.2:+3436828 | None:intergenic |
| AGGATGCTGTATTGCCCTTG+TGG | 0.556238 | 4.2:-3436905 | MS.gene06189:CDS |
| CCCCAATTACATTGTTCCTG+TGG | 0.559811 | 4.2:+3443692 | None:intergenic |
| GCGAGTTGCAGAGTGTAAAG+AGG | 0.567225 | 4.2:-3440411 | MS.gene06189:CDS |
| CCCAAAGGACAAATTCGATA+GGG | 0.568698 | 4.2:+3444829 | None:intergenic |
| AGAAGATGGCAGGGTCGTGT+TGG | 0.579641 | 4.2:-3445367 | MS.gene06189:CDS |
| GAAAGTTTCTCAAATGGCAA+AGG | 0.583814 | 4.2:-3444884 | MS.gene06189:CDS |
| CCACAGGAACAATGTAATTG+GGG | 0.584095 | 4.2:-3443692 | MS.gene06189:CDS |
| GGATACATACGTGGTTCTGA+TGG | 0.587638 | 4.2:-3442770 | MS.gene06189:CDS |
| TTCACCTCATCGCTTCCAGA+AGG | 0.589446 | 4.2:+3444534 | None:intergenic |
| ATCTCATACAGTTGAATCAG+TGG | 0.591158 | 4.2:+3436982 | None:intergenic |
| CTTATCTGACTAGCTAACTC+GGG | 0.593706 | 4.2:+3436823 | None:intergenic |
| TCGCCTATTATATCCGGGGT+TGG | 0.597810 | 4.2:+3440430 | None:intergenic |
| TAACGTACGTACCTCTGTAT+CGG | 0.598872 | 4.2:+3445340 | None:intergenic |
| TAGGGGACACAATATTTCAA+AGG | 0.601696 | 4.2:-3443633 | MS.gene06189:intron |
| ATGATGCAGCTTCAGAAGCA+AGG | 0.602101 | 4.2:+3436875 | None:intergenic |
| TTTCTTCCAAGCAGTTGCAC+CGG | 0.608122 | 4.2:-3439798 | MS.gene06189:intron |
| AAGCAAGGTGCTCCTCCACA+AGG | 0.610973 | 4.2:+3436890 | None:intergenic |
| AATGTTTAATCCAGGAGTCG+AGG | 0.613521 | 4.2:-3438540 | MS.gene06189:intron |
| AAGAATATAAGCTTATTCAC+CGG | 0.614977 | 4.2:-3440541 | MS.gene06189:CDS |
| CCCCAAAGGACAAATTCGAT+AGG | 0.615725 | 4.2:+3444828 | None:intergenic |
| GAGAGCTCCTGGTGTATTGG+GGG | 0.618129 | 4.2:-3436953 | MS.gene06189:CDS |
| TTTGATGTGCATGAATTGCA+AGG | 0.621600 | 4.2:-3441877 | MS.gene06189:intron |
| ATGCTGTATTGCCCTTGTGG+AGG | 0.622412 | 4.2:-3436902 | MS.gene06189:CDS |
| TACTCCTTCTGGAAGCGATG+AGG | 0.627318 | 4.2:-3444538 | MS.gene06189:intron |
| GGAAGTTTATGAGGCTCACA+AGG | 0.632515 | 4.2:-3439777 | MS.gene06189:intron |
| GCTATACTACTTTCAAGACA+TGG | 0.632611 | 4.2:-3441903 | MS.gene06189:CDS |
| GTACGTACCTCTGTATCGGA+AGG | 0.632909 | 4.2:+3445344 | None:intergenic |
| TCAATAAGGGAATACTTCTG+GGG | 0.643607 | 4.2:-3444563 | MS.gene06189:CDS |
| CAACTCGCCTATTATATCCG+GGG | 0.650891 | 4.2:+3440426 | None:intergenic |
| TAAGCTTATTCACCGGCCAA+CGG | 0.652544 | 4.2:-3440534 | MS.gene06189:CDS |
| ATCATCTGGAGATTATGAAG+CGG | 0.659188 | 4.2:-3439951 | MS.gene06189:CDS |
| CAAGCTTTGACTACCAACCC+CGG | 0.668548 | 4.2:-3440443 | MS.gene06189:CDS |
| GTGTTGGCCTTCCGATACAG+AGG | 0.670297 | 4.2:-3445351 | MS.gene06189:intron |
| CACAGGAACAATGTAATTGG+GGG | 0.671775 | 4.2:-3443691 | MS.gene06189:CDS |
| AGCAAGGTGCTCCTCCACAA+GGG | 0.671955 | 4.2:+3436891 | None:intergenic |
| TGTCAGGAGAGAATATCTCA+AGG | 0.688973 | 4.2:-3436851 | MS.gene06189:CDS |
| GTATATGCACTACAGAATAG+GGG | 0.695498 | 4.2:-3443650 | MS.gene06189:CDS |
| GGTATCATTGGATACATACG+TGG | 0.735502 | 4.2:-3442779 | MS.gene06189:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 3436768 | 3445634 | 3436768 | ID=MS.gene06189 |
| chr4.2 | mRNA | 3436768 | 3445634 | 3436768 | ID=MS.gene06189.t1;Parent=MS.gene06189 |
| chr4.2 | exon | 3445632 | 3445634 | 3445632 | ID=MS.gene06189.t1.exon1;Parent=MS.gene06189.t1 |
| chr4.2 | CDS | 3445632 | 3445634 | 3445632 | ID=cds.MS.gene06189.t1;Parent=MS.gene06189.t1 |
| chr4.2 | exon | 3445352 | 3445396 | 3445352 | ID=MS.gene06189.t1.exon2;Parent=MS.gene06189.t1 |
| chr4.2 | CDS | 3445352 | 3445396 | 3445352 | ID=cds.MS.gene06189.t1;Parent=MS.gene06189.t1 |
| chr4.2 | exon | 3444810 | 3444923 | 3444810 | ID=MS.gene06189.t1.exon3;Parent=MS.gene06189.t1 |
| chr4.2 | CDS | 3444810 | 3444923 | 3444810 | ID=cds.MS.gene06189.t1;Parent=MS.gene06189.t1 |
| chr4.2 | exon | 3444539 | 3444610 | 3444539 | ID=MS.gene06189.t1.exon4;Parent=MS.gene06189.t1 |
| chr4.2 | CDS | 3444539 | 3444610 | 3444539 | ID=cds.MS.gene06189.t1;Parent=MS.gene06189.t1 |
| chr4.2 | exon | 3444221 | 3444264 | 3444221 | ID=MS.gene06189.t1.exon5;Parent=MS.gene06189.t1 |
| chr4.2 | CDS | 3444221 | 3444264 | 3444221 | ID=cds.MS.gene06189.t1;Parent=MS.gene06189.t1 |
| chr4.2 | exon | 3443634 | 3443787 | 3443634 | ID=MS.gene06189.t1.exon6;Parent=MS.gene06189.t1 |
| chr4.2 | CDS | 3443634 | 3443787 | 3443634 | ID=cds.MS.gene06189.t1;Parent=MS.gene06189.t1 |
| chr4.2 | exon | 3442736 | 3442801 | 3442736 | ID=MS.gene06189.t1.exon7;Parent=MS.gene06189.t1 |
| chr4.2 | CDS | 3442736 | 3442801 | 3442736 | ID=cds.MS.gene06189.t1;Parent=MS.gene06189.t1 |
| chr4.2 | exon | 3442580 | 3442659 | 3442580 | ID=MS.gene06189.t1.exon8;Parent=MS.gene06189.t1 |
| chr4.2 | CDS | 3442580 | 3442659 | 3442580 | ID=cds.MS.gene06189.t1;Parent=MS.gene06189.t1 |
| chr4.2 | exon | 3441878 | 3441977 | 3441878 | ID=MS.gene06189.t1.exon9;Parent=MS.gene06189.t1 |
| chr4.2 | CDS | 3441878 | 3441977 | 3441878 | ID=cds.MS.gene06189.t1;Parent=MS.gene06189.t1 |
| chr4.2 | exon | 3440392 | 3440567 | 3440392 | ID=MS.gene06189.t1.exon10;Parent=MS.gene06189.t1 |
| chr4.2 | CDS | 3440392 | 3440567 | 3440392 | ID=cds.MS.gene06189.t1;Parent=MS.gene06189.t1 |
| chr4.2 | exon | 3439933 | 3439973 | 3439933 | ID=MS.gene06189.t1.exon11;Parent=MS.gene06189.t1 |
| chr4.2 | CDS | 3439933 | 3439973 | 3439933 | ID=cds.MS.gene06189.t1;Parent=MS.gene06189.t1 |
| chr4.2 | exon | 3439778 | 3439806 | 3439778 | ID=MS.gene06189.t1.exon12;Parent=MS.gene06189.t1 |
| chr4.2 | CDS | 3439778 | 3439806 | 3439778 | ID=cds.MS.gene06189.t1;Parent=MS.gene06189.t1 |
| chr4.2 | exon | 3438652 | 3438721 | 3438652 | ID=MS.gene06189.t1.exon13;Parent=MS.gene06189.t1 |
| chr4.2 | CDS | 3438652 | 3438721 | 3438652 | ID=cds.MS.gene06189.t1;Parent=MS.gene06189.t1 |
| chr4.2 | exon | 3438459 | 3438548 | 3438459 | ID=MS.gene06189.t1.exon14;Parent=MS.gene06189.t1 |
| chr4.2 | CDS | 3438459 | 3438548 | 3438459 | ID=cds.MS.gene06189.t1;Parent=MS.gene06189.t1 |
| chr4.2 | exon | 3436768 | 3437012 | 3436768 | ID=MS.gene06189.t1.exon15;Parent=MS.gene06189.t1 |
| chr4.2 | CDS | 3436768 | 3437012 | 3436768 | ID=cds.MS.gene06189.t1;Parent=MS.gene06189.t1 |
| Gene Sequence |
| Protein sequence |