AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058852


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058852.t1 MTR_8g086550 90.968 310 28 0 1 310 1 310 0.0 579
MS.gene058852.t1 MTR_4g086500 89.677 310 32 0 1 310 1 310 0.0 573
MS.gene058852.t1 MTR_2g016520 54.785 303 104 7 11 310 11 283 1.89e-100 296
MS.gene058852.t1 MTR_8g086580 46.701 197 45 5 50 238 3 147 2.78e-40 138
MS.gene058852.t1 MTR_3g069730 32.589 224 132 6 93 309 4 215 7.25e-27 105
MS.gene058852.t1 MTR_5g081560 39.416 137 66 3 178 309 85 209 5.10e-26 102
MS.gene058852.t1 MTR_7g065920 39.007 141 61 4 178 309 108 232 5.89e-23 95.5
MS.gene058852.t1 MTR_3g069760 43.529 85 42 1 181 265 72 150 1.64e-15 73.9
MS.gene058852.t1 MTR_4g113230 69.565 46 14 0 187 232 26 71 1.73e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058852.t1 AT5G05830 38.710 155 77 5 161 309 59 201 2.04e-25 101
MS.gene058852.t1 AT2G34200 47.328 131 51 5 178 306 99 213 2.62e-24 98.6
MS.gene058852.t1 AT2G34200 47.328 131 51 5 178 306 99 213 2.62e-24 98.6
MS.gene058852.t1 AT5G59000 44.554 101 56 0 210 310 130 230 1.25e-22 94.4
MS.gene058852.t1 AT5G01070 39.860 143 60 6 178 309 75 202 8.69e-22 91.7
MS.gene058852.t1 AT2G37950 32.847 137 73 3 178 309 81 203 3.86e-19 84.3

Find 83 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTACTGGTAATGCATTTA+TGG 0.196515 4.3:-13915241 MS.gene058852:CDS
CTAGTTATAATTCGCTTAAT+CGG 0.291790 4.3:-13916652 MS.gene058852:CDS
AGGATTTGCCATCTGGCCTC+TGG 0.305376 4.3:-13916398 MS.gene058852:CDS
CTGGGCATAGTTTGGGTGAT+AGG 0.306649 4.3:-13916832 MS.gene058852:CDS
AGGAGAAAGCTTTAGAGGTT+AGG 0.311670 4.3:-13916739 MS.gene058852:CDS
GAAGCTAAAACTAATGAATC+AGG 0.315323 4.3:-13916548 MS.gene058852:CDS
GGAGAAAGCTTTAGAGGTTA+GGG 0.319543 4.3:-13916738 MS.gene058852:CDS
ATGCTGGATCAACTTGATAA+AGG 0.324942 4.3:-13916908 MS.gene058852:CDS
TGCTGGATCAACTTGATAAA+GGG 0.326636 4.3:-13916907 MS.gene058852:CDS
GGTAAAGGAGAAAGCTTTAG+AGG 0.329153 4.3:-13916744 MS.gene058852:CDS
GAGGCATGGTTCAAGATTAA+AGG 0.350624 4.3:-13916257 MS.gene058852:CDS
TGATGGAGATAATAGAAAAT+TGG 0.357965 4.3:-13916570 MS.gene058852:CDS
TGCAGGAACTGGGCATAGTT+TGG 0.361951 4.3:-13916840 MS.gene058852:CDS
TGTGGCACCTGCGAAGGTTT+TGG 0.368290 4.3:-13916449 MS.gene058852:CDS
TGAATGATGAAATGATTTGT+AGG 0.371903 4.3:-13916418 MS.gene058852:CDS
GCCATTCTGTAACTTCTTGA+TGG 0.380363 4.3:-13915142 MS.gene058852:CDS
TCGGTCTCAGACACCCCTTT+TGG 0.388585 4.3:+13916500 None:intergenic
GTTGCAACTGATGCAGGAAC+TGG 0.393282 4.3:-13916851 MS.gene058852:CDS
TGATGAGAATTTGAGTCATT+TGG 0.393618 4.3:-13916882 MS.gene058852:CDS
CCCGCAGGTTGGTTGGATGC+TGG 0.398747 4.3:-13915173 MS.gene058852:CDS
GATTTGTAGGATTTGCCATC+TGG 0.398866 4.3:-13916405 MS.gene058852:CDS
TGGTACTTGTGTAATGGATC+AGG 0.403604 4.3:-13916954 None:intergenic
CCGTTAGAAGCAACTGTTGT+TGG 0.413223 4.3:-13916371 MS.gene058852:CDS
TAACTTCTTGATGGTGTGTC+TGG 0.415676 4.3:-13915133 MS.gene058852:CDS
GTTGAACATGTCACTGTTGA+TGG 0.423656 4.3:-13916587 MS.gene058852:CDS
GGTTCAAGATTAAAGGAAAC+AGG 0.425638 4.3:-13916250 MS.gene058852:intron
TAGTTATAATTCGCTTAATC+GGG 0.430272 4.3:-13916651 MS.gene058852:CDS
TTAACGATAAAAGCACCAAA+AGG 0.457676 4.3:-13916515 MS.gene058852:CDS
GGTGATAGGGTTAGTGTATC+CGG 0.463072 4.3:-13916818 MS.gene058852:CDS
GGTTGGTTGGATGCTGGCGC+GGG 0.463273 4.3:-13915167 MS.gene058852:CDS
ACAGCCATTGCGCTGAGGCA+TGG 0.464024 4.3:-13916271 MS.gene058852:CDS
TTAGTGTATCCGGTGAAGAT+TGG 0.472343 4.3:-13916808 MS.gene058852:CDS
AATTTGAGTCATTTGGTTGA+AGG 0.473198 4.3:-13916875 MS.gene058852:CDS
AGTACAGGTTTGATTATGCT+TGG 0.474501 4.3:-13916326 MS.gene058852:CDS
CCAGCATCCAACCAACCTGC+GGG 0.478894 4.3:+13915173 None:intergenic
AATATTGCTGATAAAAGTAC+AGG 0.482540 4.3:-13916341 MS.gene058852:CDS
TAACGATAAAAGCACCAAAA+GGG 0.488566 4.3:-13916514 MS.gene058852:CDS
GAAGGAGTTGCAACTGATGC+AGG 0.489326 4.3:-13916857 MS.gene058852:CDS
TGGGCATAGTTTGGGTGATA+GGG 0.493652 4.3:-13916831 MS.gene058852:CDS
GCAGGAACTGGGCATAGTTT+GGG 0.497517 4.3:-13916839 MS.gene058852:CDS
TAAAGGTGGTAATGAAATGC+TGG 0.499770 4.3:-13916924 MS.gene058852:CDS
TGTATTGAATGAGGAGGTAA+AGG 0.501793 4.3:-13916759 MS.gene058852:CDS
GGATTTGCCATCTGGCCTCT+GGG 0.503004 4.3:-13916397 MS.gene058852:CDS
AACTCACCCCGCAGGTTGGT+TGG 0.522488 4.3:-13915180 MS.gene058852:CDS
ATGGATCAGGGAACAAGTAA+AGG 0.526969 4.3:-13916941 MS.gene058852:CDS
ATGGAAGAATGGTGTGAAAG+TGG 0.529176 4.3:-13915222 MS.gene058852:CDS
AAACCGACTATGAATTGCAT+AGG 0.530176 4.3:-13916688 MS.gene058852:CDS
GAATTGCATAGGGTTGATCA+AGG 0.540287 4.3:-13916677 MS.gene058852:CDS
ATCCGGTGAAGATTGGAGTT+CGG 0.541824 4.3:-13916801 MS.gene058852:CDS
AGGTTGGTTGGATGCTGGCG+CGG 0.542202 4.3:-13915168 MS.gene058852:CDS
TTCCGAACTCCAATCTTCAC+CGG 0.558500 4.3:+13916799 None:intergenic
GAGGTTAGGGGTCAGAACAT+TGG 0.564935 4.3:-13916725 MS.gene058852:CDS
GTAATGCATTTATGGAAGAA+TGG 0.567751 4.3:-13915233 MS.gene058852:CDS
AACCCTATGCAATTCATAGT+CGG 0.573395 4.3:+13916685 None:intergenic
TGAACCATGCCTCAGCGCAA+TGG 0.575958 4.3:+13916267 None:intergenic
GCTGGATCAACTTGATAAAG+GGG 0.578516 4.3:-13916906 MS.gene058852:CDS
ACGGTTGCCCAGAGGCCAGA+TGG 0.580864 4.3:+13916390 None:intergenic
TTGCAACTGATGCAGGAACT+GGG 0.581538 4.3:-13916850 MS.gene058852:CDS
AACCGACTATGAATTGCATA+GGG 0.581786 4.3:-13916687 MS.gene058852:CDS
CCAACAACAGTTGCTTCTAA+CGG 0.582805 4.3:+13916371 None:intergenic
AAGCTAAAACTAATGAATCA+GGG 0.584737 4.3:-13916547 MS.gene058852:CDS
GGTACTTGTGTAATGGATCA+GGG 0.587895 4.3:-13916953 None:intergenic
CGCTCACAGCCATTGCGCTG+AGG 0.595519 4.3:-13916276 MS.gene058852:CDS
GTTAGGGGTCAGAACATTGG+TGG 0.610248 4.3:-13916722 MS.gene058852:CDS
GCCAGCATCCAACCAACCTG+CGG 0.612641 4.3:+13915172 None:intergenic
ATGAACTGTGGCACCTGCGA+AGG 0.615670 4.3:-13916455 MS.gene058852:CDS
ACCATCAAGAAGTTACAGAA+TGG 0.619620 4.3:+13915141 None:intergenic
AATTGCATAGGGTTGATCAA+GGG 0.626574 4.3:-13916676 MS.gene058852:CDS
GATCAGGGAACAAGTAAAGG+TGG 0.626626 4.3:-13916938 MS.gene058852:CDS
AACGATAAAAGCACCAAAAG+GGG 0.627323 4.3:-13916513 MS.gene058852:CDS
ATGATAGTAACTCACCCCGC+AGG 0.629835 4.3:-13915188 MS.gene058852:CDS
GAGAAAGCTTTAGAGGTTAG+GGG 0.634684 4.3:-13916737 MS.gene058852:CDS
CAATGATCTTGTATTGAATG+AGG 0.642930 4.3:-13916768 MS.gene058852:CDS
AAATGCATTACCAGTAACAT+CGG 0.643727 4.3:+13915245 None:intergenic
AGAAGAATCTAGTACAACAC+AGG 0.650979 4.3:+13916616 None:intergenic
TACAGGTTGTGCGAAATATG+TGG 0.657247 4.3:-13915288 MS.gene058852:intron
TGTGCATGTAAAGATGAGCT+AGG 0.657822 4.3:-13916302 MS.gene058852:CDS
TGCTTCTAACGGTTGCCCAG+AGG 0.661368 4.3:+13916382 None:intergenic
TAGTAACTCACCCCGCAGGT+TGG 0.661970 4.3:-13915184 MS.gene058852:CDS
ATCTTCACACGAAAGAACCA+TGG 0.683588 4.3:+13915093 None:intergenic
TGATCTTGTATTGAATGAGG+AGG 0.684968 4.3:-13916765 MS.gene058852:CDS
CAGCATCCAACCAACCTGCG+GGG 0.693363 4.3:+13915174 None:intergenic
TGTGTGATTGATATGAACTG+TGG 0.752488 4.3:-13916467 MS.gene058852:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATTCTGTAATAATACT+TGG - chr4.3:13916043-13916062 MS.gene058852:intron 15.0%
!! AAAAATAATGCAATGCTAAT+AGG + chr4.3:13916007-13916026 None:intergenic 20.0%
!! AAAAGATACTAATAGAACTA+AGG + chr4.3:13916712-13916731 None:intergenic 20.0%
!! ATTAAGTAATGAGAACTTAA+AGG + chr4.3:13915948-13915967 None:intergenic 20.0%
!! ATTCTAATGCTACATTTATA+AGG + chr4.3:13916132-13916151 None:intergenic 20.0%
!!! AATCACACATGAATTTTTAT+CGG + chr4.3:13915549-13915568 None:intergenic 20.0%
!!! ATATGCTTATGCTATATTTT+TGG - chr4.3:13916668-13916687 MS.gene058852:CDS 20.0%
!!! TCATTTTTTTTCTTTCTTTC+TGG - chr4.3:13916301-13916320 MS.gene058852:CDS 20.0%
! AAGCTAAAACTAATGAATCA+GGG - chr4.3:13915480-13915499 MS.gene058852:intron 25.0%
! ATGACATCTAAATGATGATA+TGG - chr4.3:13916529-13916548 MS.gene058852:CDS 25.0%
! CTAGTTATAATTCGCTTAAT+CGG - chr4.3:13915375-13915394 MS.gene058852:intron 25.0%
! TAGTTATAATTCGCTTAATC+GGG - chr4.3:13915376-13915395 MS.gene058852:intron 25.0%
! TGATGGAGATAATAGAAAAT+TGG - chr4.3:13915457-13915476 MS.gene058852:intron 25.0%
! TTGTGAATTCAAAATACACA+AGG + chr4.3:13915905-13915924 None:intergenic 25.0%
! TTTGAATTCACAATGCTATA+GGG - chr4.3:13915912-13915931 MS.gene058852:intron 25.0%
!! AATATTGCTGATAAAAGTAC+AGG - chr4.3:13915686-13915705 MS.gene058852:intron 25.0%
!! ATCTTTTCTTCTTTGCATAA+TGG - chr4.3:13916074-13916093 MS.gene058852:intron 25.0%
!! GTACTTTTATCAGCAATATT+TGG + chr4.3:13915686-13915705 None:intergenic 25.0%
!! TGAATGATGAAATGATTTGT+AGG - chr4.3:13915609-13915628 MS.gene058852:intron 25.0%
!! TTTTGAATTCACAATGCTAT+AGG - chr4.3:13915911-13915930 MS.gene058852:intron 25.0%
AAAGCAGTTGTATTAGTAGT+TGG - chr4.3:13916248-13916267 MS.gene058852:intron 30.0%
AAATGCATTACCAGTAACAT+CGG + chr4.3:13916785-13916804 None:intergenic 30.0%
AATAGATACTCAGAAAGTCA+GGG + chr4.3:13916372-13916391 None:intergenic 30.0%
AATTTGAGTCATTTGGTTGA+AGG - chr4.3:13915152-13915171 MS.gene058852:CDS 30.0%
ATAGAAGACTCAAAGAATCA+TGG + chr4.3:13916629-13916648 None:intergenic 30.0%
CAATGATCTTGTATTGAATG+AGG - chr4.3:13915259-13915278 MS.gene058852:CDS 30.0%
CATTACTTAATAATCCGACT+AGG - chr4.3:13915957-13915976 MS.gene058852:intron 30.0%
GAAGCTAAAACTAATGAATC+AGG - chr4.3:13915479-13915498 MS.gene058852:intron 30.0%
GTAATGCATTTATGGAAGAA+TGG - chr4.3:13916794-13916813 MS.gene058852:CDS 30.0%
TAGAATGAGAACAAAACAGT+TGG - chr4.3:13916146-13916165 MS.gene058852:intron 30.0%
TAGTAGTTGGTTAATGTATG+TGG - chr4.3:13916261-13916280 MS.gene058852:CDS 30.0%
TGATGAGAATTTGAGTCATT+TGG - chr4.3:13915145-13915164 MS.gene058852:CDS 30.0%
TTCTAGATATCATTCCTAGT+CGG + chr4.3:13915974-13915993 None:intergenic 30.0%
TTCTGAGTATCTATTGGTAA+TGG - chr4.3:13916377-13916396 MS.gene058852:CDS 30.0%
! AGTATCTTTTCTGATCATAC+AGG - chr4.3:13916722-13916741 MS.gene058852:CDS 30.0%
! ATGATATGGATTCTTGTTTG+TGG - chr4.3:13916543-13916562 MS.gene058852:CDS 30.0%
! CAATTGAATTCTGTTGTTTG+TGG - chr4.3:13916495-13916514 MS.gene058852:CDS 30.0%
! TGTTACTGGTAATGCATTTA+TGG - chr4.3:13916786-13916805 MS.gene058852:CDS 30.0%
!! TAACGATAAAAGCACCAAAA+GGG - chr4.3:13915513-13915532 MS.gene058852:intron 30.0%
!! TTAACGATAAAAGCACCAAA+AGG - chr4.3:13915512-13915531 MS.gene058852:intron 30.0%
!!! AATTCATAGTCGGTTTTTTC+AGG + chr4.3:13915335-13915354 None:intergenic 30.0%
AAACCGACTATGAATTGCAT+AGG - chr4.3:13915339-13915358 MS.gene058852:intron 35.0%
AACCCTATGCAATTCATAGT+CGG + chr4.3:13915345-13915364 None:intergenic 35.0%
AACCGACTATGAATTGCATA+GGG - chr4.3:13915340-13915359 MS.gene058852:intron 35.0%
ACCATCAAGAAGTTACAGAA+TGG + chr4.3:13916889-13916908 None:intergenic 35.0%
AGAAGAATCTAGTACAACAC+AGG + chr4.3:13915414-13915433 None:intergenic 35.0%
AGTACAGGTTTGATTATGCT+TGG - chr4.3:13915701-13915720 MS.gene058852:intron 35.0%
AGTTGTTAGTACATTGTCAG+AGG + chr4.3:13916192-13916211 None:intergenic 35.0%
ATGCTGGATCAACTTGATAA+AGG - chr4.3:13915119-13915138 MS.gene058852:CDS 35.0%
CAATAGATACTCAGAAAGTC+AGG + chr4.3:13916373-13916392 None:intergenic 35.0%
CTGACTTTCTGAGTATCTAT+TGG - chr4.3:13916371-13916390 MS.gene058852:CDS 35.0%
GCTAAACTGAAGATTTCACA+AGG + chr4.3:13916104-13916123 None:intergenic 35.0%
GGTTCAAGATTAAAGGAAAC+AGG - chr4.3:13915777-13915796 MS.gene058852:intron 35.0%
GTTGTTAGTACATTGTCAGA+GGG + chr4.3:13916191-13916210 None:intergenic 35.0%
TAAGGAACCTCAGGTTTATT+CGG + chr4.3:13916694-13916713 None:intergenic 35.0%
TAATAGAACTAAGGAACCTC+AGG + chr4.3:13916703-13916722 None:intergenic 35.0%
TGATCTTGTATTGAATGAGG+AGG - chr4.3:13915262-13915281 MS.gene058852:CDS 35.0%
TGCTGGATCAACTTGATAAA+GGG - chr4.3:13915120-13915139 MS.gene058852:CDS 35.0%
TGTATTGAATGAGGAGGTAA+AGG - chr4.3:13915268-13915287 MS.gene058852:CDS 35.0%
TGTGTGATTGATATGAACTG+TGG - chr4.3:13915560-13915579 MS.gene058852:intron 35.0%
TTGTTAGTACATTGTCAGAG+GGG + chr4.3:13916190-13916209 None:intergenic 35.0%
! AATTGCATAGGGTTGATCAA+GGG - chr4.3:13915351-13915370 MS.gene058852:intron 35.0%
! TAAAGGTGGTAATGAAATGC+TGG - chr4.3:13915103-13915122 MS.gene058852:CDS 35.0%
! TAATAGCTTTTGTTCTGCCA+TGG - chr4.3:13916917-13916936 MS.gene058852:CDS 35.0%
!! AACGATAAAAGCACCAAAAG+GGG - chr4.3:13915514-13915533 MS.gene058852:intron 35.0%
!! TGGTAATGGACTTCAATGAA+GGG - chr4.3:13916391-13916410 MS.gene058852:CDS 35.0%
!! TTGGTAATGGACTTCAATGA+AGG - chr4.3:13916390-13916409 MS.gene058852:CDS 35.0%
AAAAACGTGTCCGATGTTAC+TGG - chr4.3:13916772-13916791 MS.gene058852:CDS 40.0%
ACTTCAATGAAGGGTGAGTT+GGG - chr4.3:13916400-13916419 MS.gene058852:CDS 40.0%
ATCTTCACACGAAAGAACCA+TGG + chr4.3:13916937-13916956 None:intergenic 40.0%
ATGGAAGAATGGTGTGAAAG+TGG - chr4.3:13916805-13916824 MS.gene058852:CDS 40.0%
ATGGATCAGGGAACAAGTAA+AGG - chr4.3:13915086-13915105 MS.gene058852:CDS 40.0%
CCAAATTCATCCATCTCGTA+AGG + chr4.3:13916454-13916473 None:intergenic 40.0%
CCAACAACAGTTGCTTCTAA+CGG + chr4.3:13915659-13915678 None:intergenic 40.0%
CCTTACGAGATGGATGAATT+TGG - chr4.3:13916451-13916470 MS.gene058852:CDS 40.0%
GAGGCATGGTTCAAGATTAA+AGG - chr4.3:13915770-13915789 MS.gene058852:intron 40.0%
GATTTGTAGGATTTGCCATC+TGG - chr4.3:13915622-13915641 MS.gene058852:intron 40.0%
GCCATTCTGTAACTTCTTGA+TGG - chr4.3:13916885-13916904 MS.gene058852:CDS 40.0%
GCTGGATCAACTTGATAAAG+GGG - chr4.3:13915121-13915140 MS.gene058852:CDS 40.0%
GTTGAACATGTCACTGTTGA+TGG - chr4.3:13915440-13915459 MS.gene058852:intron 40.0%
TACAGGTTGTGCGAAATATG+TGG - chr4.3:13916739-13916758 MS.gene058852:CDS 40.0%
TGTGCATGTAAAGATGAGCT+AGG - chr4.3:13915725-13915744 MS.gene058852:intron 40.0%
TTAGTGTATCCGGTGAAGAT+TGG - chr4.3:13915219-13915238 MS.gene058852:CDS 40.0%
! AGTAACATCGGACACGTTTT+TGG + chr4.3:13916773-13916792 None:intergenic 40.0%
! ATTTTCACCAAAACCTTCGC+AGG + chr4.3:13915588-13915607 None:intergenic 40.0%
! GAATTGCATAGGGTTGATCA+AGG - chr4.3:13915350-13915369 MS.gene058852:intron 40.0%
! GGTAAAGGAGAAAGCTTTAG+AGG - chr4.3:13915283-13915302 MS.gene058852:CDS 40.0%
! TTTTCATGTTGACGTGTTCG+TGG - chr4.3:13916577-13916596 MS.gene058852:CDS 40.0%
!! AGGAGAAAGCTTTAGAGGTT+AGG - chr4.3:13915288-13915307 MS.gene058852:intron 40.0%
!! GAGAAAGCTTTAGAGGTTAG+GGG - chr4.3:13915290-13915309 MS.gene058852:intron 40.0%
!! GGAGAAAGCTTTAGAGGTTA+GGG - chr4.3:13915289-13915308 MS.gene058852:intron 40.0%
!! TAACTTCTTGATGGTGTGTC+TGG - chr4.3:13916894-13916913 MS.gene058852:CDS 40.0%
!! TTTTTGGCCGAATAAACCTG+AGG - chr4.3:13916684-13916703 MS.gene058852:CDS 40.0%
AGGGTGCATAGGGATAATAG+TGG + chr4.3:13916353-13916372 None:intergenic 45.0%
ATCCGGTGAAGATTGGAGTT+CGG - chr4.3:13915226-13915245 MS.gene058852:CDS 45.0%
ATCTCGTAAGGAACACCAAC+AGG + chr4.3:13916442-13916461 None:intergenic 45.0%
CCGTTAGAAGCAACTGTTGT+TGG - chr4.3:13915656-13915675 MS.gene058852:intron 45.0%
GACTTCAATGAAGGGTGAGT+TGG - chr4.3:13916399-13916418 MS.gene058852:CDS 45.0%
GATCAGGGAACAAGTAAAGG+TGG - chr4.3:13915089-13915108 MS.gene058852:CDS 45.0%
TAGTACATTGTCAGAGGGGA+GGG + chr4.3:13916186-13916205 None:intergenic 45.0%
TCAGAAAGTCAGGGTGCATA+GGG + chr4.3:13916363-13916382 None:intergenic 45.0%
TGGGCATAGTTTGGGTGATA+GGG - chr4.3:13915196-13915215 MS.gene058852:CDS 45.0%
TTAGTACATTGTCAGAGGGG+AGG + chr4.3:13916187-13916206 None:intergenic 45.0%
TTCCGAACTCCAATCTTCAC+CGG + chr4.3:13915231-13915250 None:intergenic 45.0%
TTGCAACTGATGCAGGAACT+GGG - chr4.3:13915177-13915196 MS.gene058852:CDS 45.0%
! AAAGGCATATAGACGCCTGT+TGG - chr4.3:13916424-13916443 MS.gene058852:CDS 45.0%
! ATGAAGGGTGAGTTGGGAAA+AGG - chr4.3:13916406-13916425 MS.gene058852:CDS 45.0%
! GGTGATAGGGTTAGTGTATC+CGG - chr4.3:13915209-13915228 MS.gene058852:CDS 45.0%
! TGTTGGTGTTCCTTACGAGA+TGG - chr4.3:13916441-13916460 MS.gene058852:CDS 45.0%
!!! AATTACAATTTTTTTTTTAT+AGG + chr4.3:13916223-13916242 None:intergenic 5.0%
AGTACATTGTCAGAGGGGAG+GGG + chr4.3:13916185-13916204 None:intergenic 50.0%
ATGATAGTAACTCACCCCGC+AGG - chr4.3:13916839-13916858 MS.gene058852:CDS 50.0%
CTCAGAAAGTCAGGGTGCAT+AGG + chr4.3:13916364-13916383 None:intergenic 50.0%
CTGGGCATAGTTTGGGTGAT+AGG - chr4.3:13915195-13915214 MS.gene058852:CDS 50.0%
GAAGGAGTTGCAACTGATGC+AGG - chr4.3:13915170-13915189 MS.gene058852:CDS 50.0%
GAGGTTAGGGGTCAGAACAT+TGG - chr4.3:13915302-13915321 MS.gene058852:intron 50.0%
GCAGGAACTGGGCATAGTTT+GGG - chr4.3:13915188-13915207 MS.gene058852:CDS 50.0%
GTTAGGGGTCAGAACATTGG+TGG - chr4.3:13915305-13915324 MS.gene058852:intron 50.0%
GTTGCAACTGATGCAGGAAC+TGG - chr4.3:13915176-13915195 MS.gene058852:CDS 50.0%
TGCAGGAACTGGGCATAGTT+TGG - chr4.3:13915187-13915206 MS.gene058852:CDS 50.0%
AGGATTTGCCATCTGGCCTC+TGG - chr4.3:13915629-13915648 MS.gene058852:intron 55.0%
ATGAACTGTGGCACCTGCGA+AGG - chr4.3:13915572-13915591 MS.gene058852:intron 55.0%
GGATTTGCCATCTGGCCTCT+GGG - chr4.3:13915630-13915649 MS.gene058852:intron 55.0%
GTACATTGTCAGAGGGGAGG+GGG + chr4.3:13916184-13916203 None:intergenic 55.0%
TAGTAACTCACCCCGCAGGT+TGG - chr4.3:13916843-13916862 MS.gene058852:CDS 55.0%
TGAACCATGCCTCAGCGCAA+TGG + chr4.3:13915763-13915782 None:intergenic 55.0%
TGCTTCTAACGGTTGCCCAG+AGG + chr4.3:13915648-13915667 None:intergenic 55.0%
! TCGGTCTCAGACACCCCTTT+TGG + chr4.3:13915530-13915549 None:intergenic 55.0%
! TGTGGCACCTGCGAAGGTTT+TGG - chr4.3:13915578-13915597 MS.gene058852:intron 55.0%
ACAGCCATTGCGCTGAGGCA+TGG - chr4.3:13915756-13915775 MS.gene058852:intron 60.0%
CAGCATCCAACCAACCTGCG+GGG + chr4.3:13916856-13916875 None:intergenic 60.0%
CCAGCATCCAACCAACCTGC+GGG + chr4.3:13916857-13916876 None:intergenic 60.0%
GCCAGCATCCAACCAACCTG+CGG + chr4.3:13916858-13916877 None:intergenic 60.0%
TGTCAGAGGGGAGGGGGAAA+TGG + chr4.3:13916178-13916197 None:intergenic 60.0%
! AGGTTGGTTGGATGCTGGCG+CGG - chr4.3:13916859-13916878 MS.gene058852:CDS 60.0%
!! AACTCACCCCGCAGGTTGGT+TGG - chr4.3:13916847-13916866 MS.gene058852:CDS 60.0%
ACGGTTGCCCAGAGGCCAGA+TGG + chr4.3:13915640-13915659 None:intergenic 65.0%
CGCTCACAGCCATTGCGCTG+AGG - chr4.3:13915751-13915770 MS.gene058852:intron 65.0%
! GGTTGGTTGGATGCTGGCGC+GGG - chr4.3:13916860-13916879 MS.gene058852:CDS 65.0%
!! CCCGCAGGTTGGTTGGATGC+TGG - chr4.3:13916854-13916873 MS.gene058852:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 13915086 13916963 13915086 ID=MS.gene058852
chr4.3 mRNA 13915086 13916963 13915086 ID=MS.gene058852.t1;Parent=MS.gene058852
chr4.3 exon 13916251 13916963 13916251 ID=MS.gene058852.t1.exon1;Parent=MS.gene058852.t1
chr4.3 CDS 13916251 13916963 13916251 ID=cds.MS.gene058852.t1;Parent=MS.gene058852.t1
chr4.3 exon 13915086 13915305 13915086 ID=MS.gene058852.t1.exon2;Parent=MS.gene058852.t1
chr4.3 CDS 13915086 13915305 13915086 ID=cds.MS.gene058852.t1;Parent=MS.gene058852.t1
Gene Sequence

>MS.gene058852

ATGGATCAGGGAACAAGTAAAGGTGGTAATGAAATGCTGGATCAACTTGATAAAGGGGTTGATGAGAATTTGAGTCATTTGGTTGAAGGAGTTGCAACTGATGCAGGAACTGGGCATAGTTTGGGTGATAGGGTTAGTGTATCCGGTGAAGATTGGAGTTCGGAAGAGATGTGCAATGATCTTGTATTGAATGAGGAGGTAAAGGAGAAAGCTTTAGAGGTTAGGGGTCAGAACATTGGTGGTGATCCTGAAAAAACCGACTATGAATTGCATAGGGTTGATCAAGGGACTAGTTATAATTCGCTTAATCGGGAAACACTAGAGACCTGTGTTGTACTAGATTCTTCTGCTCAAGTTGAACATGTCACTGTTGATGGAGATAATAGAAAATTGGAAGCTAAAACTAATGAATCAGGGCTGCGCAAGTTAACGATAAAAGCACCAAAAGGGGTGTCTGAGACCGATAAAAATTCATGTGTGATTGATATGAACTGTGGCACCTGCGAAGGTTTTGGTGAAAATTTGAATGATGAAATGATTTGTAGGATTTGCCATCTGGCCTCTGGGCAACCGTTAGAAGCAACTGTTGTTGGCACTCCAAATATTGCTGATAAAAGTACAGGTTTGATTATGCTTGGTTGTGCATGTAAAGATGAGCTAGGAATCGCTCACAGCCATTGCGCTGAGGCATGGTTCAAGATTAAAGGAAACAGGTAACTTTTTCTTTTGTTAATGTCTGTTCATTACTAGTTCATAGAATAATATTTATTTATTTATATGTGCATTTGAGTTCTGCAATAATGCTTACAATGTTGACCTTGTGTATTTTGAATTCACAATGCTATAGGGACTAAACAGACCTTTAAGTTCTCATTACTTAATAATCCGACTAGGAATGATATCTAGAAAGAAAATAAACCTATTAGCATTGCATTATTTTTTTTATGTATAATCTCTATATATTCTGTAATAATACTTGGTAGATTTTATCTTTTCTTCTTTGCATAATGGCTTGCCTTGTGAAATCTTCAGTTTAGCAGCATCCTTATAAATGTAGCATTAGAATGAGAACAAAACAGTTGGATTCTACCATTTCCCCCTCCCCTCTGACAATGTACTAACAACTAACATTTACCTATAAAAAAAAAATTGTAATTTCTAAAAAGCAGTTGTATTAGTAGTTGGTTAATGTATGTGGCTCATTGTTGTTTTGCTTCATTTTTTTTCTTTCTTTCTGGCGCATCTCTACTCTCTAGATCGAAAACCACTATTATCCCTATGCACCCTGACTTTCTGAGTATCTATTGGTAATGGACTTCAATGAAGGGTGAGTTGGGAAAAGGCATATAGACGCCTGTTGGTGTTCCTTACGAGATGGATGAATTTGGATTAGATATAAGCATGATTAGCAATTGAATTCTGTTGTTTGTGGACTGCTGTTAAATGACATCTAAATGATGATATGGATTCTTGTTTGTGGATTGCATGTATTTTTCATGTTGACGTGTTCGTGGTTGATAAAAAAGCATTATTCTTATCTCCATGATTCTTTGAGTCTTCTATTTCTCTGATCATGTGATAAATATGCTTATGCTATATTTTTGGCCGAATAAACCTGAGGTTCCTTAGTTCTATTAGTATCTTTTCTGATCATACAGGTTGTGCGAAATATGTGGTGAGACTGCCAAAAACGTGTCCGATGTTACTGGTAATGCATTTATGGAAGAATGGTGTGAAAGTGGATTCATCGATAATGATAGTAACTCACCCCGCAGGTTGGTTGGATGCTGGCGCGGGCAGCCATTCTGTAACTTCTTGATGGTGTGTCTGGTAATAGCTTTTGTTCTGCCATGGTTCTTTCGTGTGAAGATGTTCTAG

Protein sequence

>MS.gene058852.t1

MDQGTSKGGNEMLDQLDKGVDENLSHLVEGVATDAGTGHSLGDRVSVSGEDWSSEEMCNDLVLNEEVKEKALEVRGQNIGGDPEKTDYELHRVDQGTSYNSLNRETLETCVVLDSSAQVEHVTVDGDNRKLEAKTNESGLRKLTIKAPKGVSETDKNSCVIDMNCGTCEGFGENLNDEMICRICHLASGQPLEATVVGTPNIADKSTGLIMLGCACKDELGIAHSHCAEAWFKIKGNRLCEICGETAKNVSDVTGNAFMEEWCESGFIDNDSNSPRRLVGCWRGQPFCNFLMVCLVIAFVLPWFFRVKMF