Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061961.t1 | XP_013451577.1 | 96.2 | 601 | 18 | 2 | 1 | 596 | 1 | 601 | 0.00E+00 | 1107 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061961.t1 | Q5XVI1 | 60.3 | 491 | 159 | 12 | 1 | 474 | 1 | 472 | 3.5e-138 | 493.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061961.t1 | A0A072UIF3 | 96.2 | 601 | 18 | 2 | 1 | 596 | 1 | 601 | 0.0e+00 | 1107.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050310 | MS.gene061961 | 0.807963 | 3.91E-50 | -1.69E-46 |
| MS.gene050901 | MS.gene061961 | 0.819482 | 1.13E-52 | -1.69E-46 |
| MS.gene051478 | MS.gene061961 | 0.827576 | 1.45E-54 | -1.69E-46 |
| MS.gene05157 | MS.gene061961 | 0.805098 | 1.57E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene061961 | 0.81649 | 5.38E-52 | -1.69E-46 |
| MS.gene056169 | MS.gene061961 | 0.81371 | 2.23E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061961.t1 | MTR_6g032885 | 96.173 | 601 | 18 | 2 | 1 | 596 | 1 | 601 | 0.0 | 1187 |
| MS.gene061961.t1 | MTR_0495s0010 | 98.795 | 83 | 1 | 0 | 1 | 83 | 1 | 83 | 1.00e-50 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061961.t1 | AT1G54385 | 60.729 | 494 | 152 | 15 | 1 | 474 | 1 | 472 | 0.0 | 532 |
| MS.gene061961.t1 | AT1G54385 | 60.729 | 494 | 152 | 15 | 1 | 474 | 1 | 472 | 0.0 | 532 |
| MS.gene061961.t1 | AT1G54385 | 60.729 | 494 | 152 | 15 | 1 | 474 | 1 | 472 | 0.0 | 532 |
| MS.gene061961.t1 | AT3G03970 | 58.108 | 296 | 119 | 3 | 1 | 294 | 1 | 293 | 1.31e-110 | 342 |
| MS.gene061961.t1 | AT3G03970 | 58.108 | 296 | 119 | 3 | 1 | 294 | 1 | 293 | 1.31e-110 | 342 |
| MS.gene061961.t1 | AT3G03970 | 58.108 | 296 | 119 | 3 | 1 | 294 | 1 | 293 | 1.31e-110 | 342 |
| MS.gene061961.t1 | AT3G03970 | 58.108 | 296 | 119 | 3 | 1 | 294 | 1 | 293 | 1.31e-110 | 342 |
| MS.gene061961.t1 | AT3G03970 | 58.108 | 296 | 119 | 3 | 1 | 294 | 1 | 293 | 1.31e-110 | 342 |
| MS.gene061961.t1 | AT3G03970 | 58.108 | 296 | 119 | 3 | 1 | 294 | 1 | 293 | 1.31e-110 | 342 |
Find 129 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTGTTGATTCGGATAAT+TGG | 0.194402 | 6.2:-20928359 | MS.gene061961:CDS |
| CAATGGCCACACCTTTAATT+TGG | 0.198465 | 6.2:-20926804 | MS.gene061961:CDS |
| AAAATCTCTTCCACTAAAAT+TGG | 0.218674 | 6.2:+20927900 | None:intergenic |
| AGGACTTGTGTTGGTACTTT+TGG | 0.218910 | 6.2:+20927549 | None:intergenic |
| TTTGTCATTCGCAACTTTCT+TGG | 0.220506 | 6.2:+20927963 | None:intergenic |
| CTTCTGATGAAATGGTTAAT+AGG | 0.231433 | 6.2:-20928329 | MS.gene061961:CDS |
| TGACTGTTGAGCCAAATTAA+AGG | 0.253297 | 6.2:+20926793 | None:intergenic |
| TATTCCATGTCTAGGACTTC+TGG | 0.253597 | 6.2:+20927573 | None:intergenic |
| CTCGAATACTTCCCTGGATA+TGG | 0.257300 | 6.2:-20927808 | MS.gene061961:CDS |
| TTCTGATGAAATGGTTAATA+GGG | 0.294905 | 6.2:-20928328 | MS.gene061961:CDS |
| AGAGAGCGAATGAGCCTCTT+TGG | 0.302508 | 6.2:+20927183 | None:intergenic |
| AAAATCTTATGTGAAAGATT+TGG | 0.307204 | 6.2:-20928745 | MS.gene061961:CDS |
| GAAGTTCTTGCTAGGGTTCA+TGG | 0.313252 | 6.2:-20928633 | MS.gene061961:CDS |
| AAGCTTTGGAGCCTTGAAAA+TGG | 0.313399 | 6.2:-20927709 | MS.gene061961:CDS |
| TGACTCGCTCACGAGTTCTT+TGG | 0.313902 | 6.2:-20928418 | MS.gene061961:CDS |
| CGAAGCTAAAGTCTGAATTA+TGG | 0.319489 | 6.2:+20928572 | None:intergenic |
| TGGTGCAGCTCTTTGCTTGA+AGG | 0.321042 | 6.2:-20928382 | MS.gene061961:CDS |
| ATGGATGGAGATAGTTCTTC+AGG | 0.327702 | 6.2:-20927877 | MS.gene061961:CDS |
| GACTAATTTGCATATGGGTT+TGG | 0.331345 | 6.2:-20928262 | MS.gene061961:CDS |
| GAACATCTTCAGAAGGCTTC+TGG | 0.347437 | 6.2:+20926923 | None:intergenic |
| TACTCAGACTAATTTGCATA+TGG | 0.347854 | 6.2:-20928268 | MS.gene061961:CDS |
| ATAGACTGACATGTTGAAAT+AGG | 0.349826 | 6.2:+20927769 | None:intergenic |
| GCAGTGCCAGTCCGATAAAA+TGG | 0.359720 | 6.2:-20928025 | MS.gene061961:CDS |
| TTCTTATCCTCCGGCATCGT+TGG | 0.368225 | 6.2:+20928477 | None:intergenic |
| CTAACGCCACAGCAACATTC+TGG | 0.372076 | 6.2:+20928301 | None:intergenic |
| CTTGAAGGCTCTTGTTGATT+CGG | 0.374085 | 6.2:-20928367 | MS.gene061961:CDS |
| TATCATCGGGCAACATTGAC+TGG | 0.382533 | 6.2:-20927098 | MS.gene061961:CDS |
| GTTCCAGCTGTCGCTAGATA+TGG | 0.391848 | 6.2:-20928507 | MS.gene061961:CDS |
| AAGAGTCCTGCTTCGGTGAC+TGG | 0.398075 | 6.2:-20927925 | MS.gene061961:CDS |
| AAGGAAACCGGTACTGTGTC+TGG | 0.401751 | 6.2:-20928678 | MS.gene061961:CDS |
| ATTCCATGTCTAGGACTTCT+GGG | 0.407692 | 6.2:+20927574 | None:intergenic |
| AAATGTCAGTGGAGAGTCTA+TGG | 0.416004 | 6.2:-20928160 | MS.gene061961:CDS |
| TTGAAATAGGAGACTCAGCC+AGG | 0.416735 | 6.2:+20927782 | None:intergenic |
| GATAAAATGGCGTTCATCAA+AGG | 0.434224 | 6.2:-20928012 | MS.gene061961:CDS |
| TCAGCCAGGGATCCATATCC+AGG | 0.434902 | 6.2:+20927796 | None:intergenic |
| AATGTTGCTGTGGCGTTAGA+AGG | 0.439725 | 6.2:-20928297 | MS.gene061961:CDS |
| ATATGTTTCTTCTTATCCTC+CGG | 0.443407 | 6.2:+20928468 | None:intergenic |
| GGAGTGTCAATAGGAAGCTT+TGG | 0.450486 | 6.2:-20927723 | MS.gene061961:CDS |
| GCGGTTTGCTTCTGATGAAA+TGG | 0.451524 | 6.2:-20928337 | MS.gene061961:CDS |
| CGCTGTATGAAGTTCTTGCT+AGG | 0.452007 | 6.2:-20928641 | MS.gene061961:CDS |
| CAGACTTTAGCTTCGAGTGC+AGG | 0.455292 | 6.2:-20928564 | MS.gene061961:CDS |
| CTCTTCAACAAGCTTGTTCG+AGG | 0.456204 | 6.2:-20928533 | MS.gene061961:CDS |
| TATTCGAGAGTACGCGACTC+TGG | 0.474280 | 6.2:+20927823 | None:intergenic |
| GCTCGACTGCTCATACAATC+CGG | 0.478888 | 6.2:-20928195 | MS.gene061961:CDS |
| ATCTTTCGTCATTCTTGCAA+TGG | 0.478922 | 6.2:-20926821 | MS.gene061961:CDS |
| TGCATGATACTGTCAATCAT+TGG | 0.479754 | 6.2:+20928597 | None:intergenic |
| TGCTCAAGTTTCTGAGACCA+AGG | 0.480477 | 6.2:-20928697 | MS.gene061961:CDS |
| ACCAAGCGCAGATTTGTTTG+CGG | 0.482675 | 6.2:-20926847 | MS.gene061961:CDS |
| AGACACAGTACCGGTTTCCT+TGG | 0.485208 | 6.2:+20928680 | None:intergenic |
| ATCCATACCATTTCTCTCCT+CGG | 0.485625 | 6.2:+20927645 | None:intergenic |
| ACTCAGACTAATTTGCATAT+GGG | 0.487815 | 6.2:-20928267 | MS.gene061961:CDS |
| GAAACTTGAGCAAGAAACAT+AGG | 0.490263 | 6.2:+20928708 | None:intergenic |
| AGACTCTTGTACCTTCGAAT+CGG | 0.491353 | 6.2:+20927120 | None:intergenic |
| ATTCCATATCTAGCGACAGC+TGG | 0.500350 | 6.2:+20928504 | None:intergenic |
| TTGTTGATTCGGATAATTGG+CGG | 0.501457 | 6.2:-20928356 | MS.gene061961:CDS |
| ATAATTTGAACTATTCATGT+AGG | 0.504708 | 6.2:-20927744 | MS.gene061961:CDS |
| GTGGATCTAAACACTTCATC+AGG | 0.509692 | 6.2:+20928091 | None:intergenic |
| GTTTCTGAGACCAAGGAAAC+CGG | 0.510693 | 6.2:-20928690 | MS.gene061961:CDS |
| ATTCATGTAGGAGTGTCAAT+AGG | 0.512298 | 6.2:-20927732 | MS.gene061961:CDS |
| GACATTTAACATGCGCAGCC+CGG | 0.516067 | 6.2:+20928176 | None:intergenic |
| TTGGAACCAGTCACCGAAGC+AGG | 0.517104 | 6.2:+20927919 | None:intergenic |
| AACGATCAAAGAGTTATGCT+TGG | 0.519887 | 6.2:+20928227 | None:intergenic |
| TCAAGTGCCGAGGAGAGAAA+TGG | 0.521681 | 6.2:-20927652 | MS.gene061961:CDS |
| CAATCAGAACTCTCATCGGT+TGG | 0.521715 | 6.2:+20927153 | None:intergenic |
| GCTGTATGAAGTTCTTGCTA+GGG | 0.522921 | 6.2:-20928640 | MS.gene061961:CDS |
| CGTACTCTCGAATACTTCCC+TGG | 0.524274 | 6.2:-20927814 | MS.gene061961:CDS |
| TACGGAAGCTCATGCGGGGA+TGG | 0.524812 | 6.2:-20927006 | MS.gene061961:CDS |
| CTTCCCTGGATATGGATCCC+TGG | 0.525024 | 6.2:-20927800 | MS.gene061961:CDS |
| AACTCTATTCATAATTATGT+AGG | 0.525068 | 6.2:+20926748 | None:intergenic |
| AGGCATGAAGAGTCCTGCTT+CGG | 0.525449 | 6.2:-20927932 | MS.gene061961:CDS |
| TGAACAAGTAATTGAGGAGA+TGG | 0.526873 | 6.2:-20928049 | MS.gene061961:CDS |
| CTCGACTGCTCATACAATCC+GGG | 0.528172 | 6.2:-20928194 | MS.gene061961:CDS |
| TCCGCAAACAAATCTGCGCT+TGG | 0.528581 | 6.2:+20926846 | None:intergenic |
| ATGGATCACACGTTTCTGAA+TGG | 0.532430 | 6.2:-20927628 | MS.gene061961:CDS |
| TGCCGAGGAGAGAAATGGTA+TGG | 0.538874 | 6.2:-20927647 | MS.gene061961:CDS |
| AAGAGTACGGAAGCTCATGC+GGG | 0.539385 | 6.2:-20927011 | MS.gene061961:CDS |
| GGAGATAGTTCTTCAGGTGA+TGG | 0.540688 | 6.2:-20927871 | MS.gene061961:CDS |
| TGGAATTGATCCAACGATGC+CGG | 0.540945 | 6.2:-20928487 | MS.gene061961:CDS |
| TGCGGGGATGGACAGTATCA+AGG | 0.541679 | 6.2:-20926994 | MS.gene061961:CDS |
| GTGAATCAGATGTGGGAGTA+CGG | 0.541970 | 6.2:+20927845 | None:intergenic |
| GCAAATCACGACAAGTATGA+TGG | 0.543100 | 6.2:-20927036 | MS.gene061961:CDS |
| CTTTCACGAACATCTTCAGA+AGG | 0.548806 | 6.2:+20926916 | None:intergenic |
| GCGGTTCGCAGCTATTCAAA+TGG | 0.550554 | 6.2:-20928121 | MS.gene061961:CDS |
| AGACTTTAGCTTCGAGTGCA+GGG | 0.551485 | 6.2:-20928563 | MS.gene061961:CDS |
| AAGTATGATGGCAAAGAGTA+CGG | 0.552367 | 6.2:-20927024 | MS.gene061961:CDS |
| TTTGGAGCCTTGAAAATGGA+GGG | 0.552771 | 6.2:-20927705 | MS.gene061961:CDS |
| CTCGAACAAGCTTGTTGAAG+AGG | 0.558983 | 6.2:+20928534 | None:intergenic |
| GCTGTAGTTCAACAATGGGA+AGG | 0.560642 | 6.2:-20928848 | None:intergenic |
| CGTGATTTGCTAAACCACTC+TGG | 0.561161 | 6.2:+20927049 | None:intergenic |
| TCTTTGGATAGTTTGAGTTG+TGG | 0.564961 | 6.2:-20928402 | MS.gene061961:CDS |
| AAGGTACAAGAGTCTATCAT+CGG | 0.569026 | 6.2:-20927112 | MS.gene061961:CDS |
| GACTCTGGTGAATCAGATGT+GGG | 0.579310 | 6.2:+20927838 | None:intergenic |
| CTTTGGAGCCTTGAAAATGG+AGG | 0.580803 | 6.2:-20927706 | MS.gene061961:CDS |
| CGACTCTGGTGAATCAGATG+TGG | 0.580997 | 6.2:+20927837 | None:intergenic |
| TCGAACAAGCTTGTTGAAGA+GGG | 0.583523 | 6.2:+20928535 | None:intergenic |
| AGGTACAAGAGTCTATCATC+GGG | 0.590068 | 6.2:-20927111 | MS.gene061961:CDS |
| AAAGAGTACGGAAGCTCATG+CGG | 0.590303 | 6.2:-20927012 | MS.gene061961:CDS |
| TCAAGCTCTCTTCGTAACAC+AGG | 0.592102 | 6.2:+20928816 | None:intergenic |
| TGATGAAGTGTTTAGATCCA+CGG | 0.595367 | 6.2:-20928089 | MS.gene061961:CDS |
| TCATATTTAGAATAAGCTGA+TGG | 0.595918 | 6.2:+20927072 | None:intergenic |
| CTCGTGAGCGAGTCAGATAG+AGG | 0.596905 | 6.2:+20928426 | None:intergenic |
| AGAACAATCAGAACTCTCAT+CGG | 0.600220 | 6.2:+20927149 | None:intergenic |
| CTGCGCATGTTAAATGTCAG+TGG | 0.602349 | 6.2:-20928171 | MS.gene061961:CDS |
| GAATTCTCCAGACACAGTAC+CGG | 0.604514 | 6.2:+20928671 | None:intergenic |
| AGGGGTTGATGTGTCTCTCA+AGG | 0.604823 | 6.2:-20927686 | MS.gene061961:CDS |
| GTCAGTGGAGAGTCTATGGA+TGG | 0.608577 | 6.2:-20928156 | MS.gene061961:CDS |
| GTTGATGTGTCTCTCAAGGA+CGG | 0.617613 | 6.2:-20927682 | MS.gene061961:CDS |
| ACTTACAACAGGACTTGTGT+TGG | 0.617904 | 6.2:+20927540 | None:intergenic |
| TCTTCAACAAGCTTGTTCGA+GGG | 0.630695 | 6.2:-20928532 | MS.gene061961:CDS |
| ATCAGCATCAGCAAGGTCGT+CGG | 0.631778 | 6.2:+20926948 | None:intergenic |
| GGAGGTTGAACAAGTAATTG+AGG | 0.633070 | 6.2:-20928055 | MS.gene061961:CDS |
| TTCATAATTATGTAGGAACA+AGG | 0.637074 | 6.2:+20926755 | None:intergenic |
| CGGTCTGTTCTCAAGTGCCG+AGG | 0.639180 | 6.2:-20927662 | MS.gene061961:CDS |
| TTGGAGCCTTGAAAATGGAG+GGG | 0.639404 | 6.2:-20927704 | MS.gene061961:CDS |
| ATCCCCAGAAGTCCTAGACA+TGG | 0.640903 | 6.2:-20927577 | MS.gene061961:CDS |
| GTTGAGCCAAATTAAAGGTG+TGG | 0.646088 | 6.2:+20926798 | None:intergenic |
| CAGCCAGGGATCCATATCCA+GGG | 0.652030 | 6.2:+20927797 | None:intergenic |
| TTCCATGTCTAGGACTTCTG+GGG | 0.653399 | 6.2:+20927575 | None:intergenic |
| TCTGGTTATCAGCATCAGCA+AGG | 0.653768 | 6.2:+20926941 | None:intergenic |
| TATTCTAAATATGACCAGAG+TGG | 0.667454 | 6.2:-20927063 | MS.gene061961:CDS |
| TGGATGGTAATTCTCAGAAG+CGG | 0.678871 | 6.2:-20928140 | MS.gene061961:CDS |
| AGAGTACGGAAGCTCATGCG+GGG | 0.680199 | 6.2:-20927010 | MS.gene061961:CDS |
| AATTGATCCAACGATGCCGG+AGG | 0.688811 | 6.2:-20928484 | MS.gene061961:CDS |
| GATCACACGTTTCTGAATGG+CGG | 0.693143 | 6.2:-20927625 | MS.gene061961:CDS |
| GGTTTGCCAGAATGTTGCTG+TGG | 0.695386 | 6.2:-20928307 | MS.gene061961:CDS |
| TGAAATAGGAGACTCAGCCA+GGG | 0.704992 | 6.2:+20927783 | None:intergenic |
| ACCTCCGAGAAAATACTCCG+TGG | 0.716880 | 6.2:+20928072 | None:intergenic |
| GAATGGCGGAGATTTAACTG+AGG | 0.756668 | 6.2:-20927611 | MS.gene061961:CDS |
| GGGGATGGACAGTATCAAGG+AGG | 0.768697 | 6.2:-20926991 | MS.gene061961:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTATTTCATGAATTAA+TGG | + | chr6.2:20928238-20928257 | None:intergenic | 10.0% |
| !! | AAAATCTTATGTGAAAGATT+TGG | - | chr6.2:20926851-20926870 | MS.gene061961:CDS | 20.0% |
| !! | AAATCAAATAATGTCGAATA+GGG | + | chr6.2:20928099-20928118 | None:intergenic | 20.0% |
| !! | ATAATTTGAACTATTCATGT+AGG | - | chr6.2:20927852-20927871 | MS.gene061961:CDS | 20.0% |
| !! | TAAATCAAATAATGTCGAAT+AGG | + | chr6.2:20928100-20928119 | None:intergenic | 20.0% |
| !! | TCAAGTTTCAATAAACAAAA+AGG | + | chr6.2:20928320-20928339 | None:intergenic | 20.0% |
| ! | AAAATCTCTTCCACTAAAAT+TGG | + | chr6.2:20927699-20927718 | None:intergenic | 25.0% |
| ! | TTCTGATGAAATGGTTAATA+GGG | - | chr6.2:20927268-20927287 | MS.gene061961:intron | 25.0% |
| !! | ATGTGAAAGATTTGGATTTT+AGG | - | chr6.2:20926859-20926878 | MS.gene061961:CDS | 25.0% |
| !! | GTTAGTGTTTCTTTTTGTTA+TGG | - | chr6.2:20928269-20928288 | MS.gene061961:CDS | 25.0% |
| !! | TCATATTTAGAATAAGCTGA+TGG | + | chr6.2:20928527-20928546 | None:intergenic | 25.0% |
| !! | TGTGAAAGATTTGGATTTTA+GGG | - | chr6.2:20926860-20926879 | MS.gene061961:CDS | 25.0% |
| !! | TTTTAGTGGAAGAGATTTTA+TGG | - | chr6.2:20927700-20927719 | MS.gene061961:CDS | 25.0% |
| ATAGACTGACATGTTGAAAT+AGG | + | chr6.2:20927830-20927849 | None:intergenic | 30.0% | |
| ATATGTTTCTTCTTATCCTC+CGG | + | chr6.2:20927131-20927150 | None:intergenic | 30.0% | |
| CTTCTGATGAAATGGTTAAT+AGG | - | chr6.2:20927267-20927286 | MS.gene061961:intron | 30.0% | |
| TATTCTAAATATGACCAGAG+TGG | - | chr6.2:20928533-20928552 | MS.gene061961:CDS | 30.0% | |
| ! | ACTCAGACTAATTTGCATAT+GGG | - | chr6.2:20927329-20927348 | MS.gene061961:intron | 30.0% |
| ! | ATATTTGAGACACTTACAAC+AGG | + | chr6.2:20928070-20928089 | None:intergenic | 30.0% |
| ! | TACTCAGACTAATTTGCATA+TGG | - | chr6.2:20927328-20927347 | MS.gene061961:intron | 30.0% |
| !! | TTTGATGAACGCCATTTTAT+CGG | + | chr6.2:20927585-20927604 | None:intergenic | 30.0% |
| AACGATCAAAGAGTTATGCT+TGG | + | chr6.2:20927372-20927391 | None:intergenic | 35.0% | |
| AAGGTACAAGAGTCTATCAT+CGG | - | chr6.2:20928484-20928503 | MS.gene061961:CDS | 35.0% | |
| AAGTATGATGGCAAAGAGTA+CGG | - | chr6.2:20928572-20928591 | MS.gene061961:CDS | 35.0% | |
| AGAACAATCAGAACTCTCAT+CGG | + | chr6.2:20928450-20928469 | None:intergenic | 35.0% | |
| ATCTTTCGTCATTCTTGCAA+TGG | - | chr6.2:20928775-20928794 | MS.gene061961:CDS | 35.0% | |
| CGAAGCTAAAGTCTGAATTA+TGG | + | chr6.2:20927027-20927046 | None:intergenic | 35.0% | |
| GAAACTTGAGCAAGAAACAT+AGG | + | chr6.2:20926891-20926910 | None:intergenic | 35.0% | |
| GATAAAATGGCGTTCATCAA+AGG | - | chr6.2:20927584-20927603 | MS.gene061961:CDS | 35.0% | |
| GCGAATGACAAAAAATTGAG+AGG | - | chr6.2:20927644-20927663 | MS.gene061961:CDS | 35.0% | |
| GTGATCTCTGATAACATGAA+AGG | + | chr6.2:20928364-20928383 | None:intergenic | 35.0% | |
| TGAACAAGTAATTGAGGAGA+TGG | - | chr6.2:20927547-20927566 | MS.gene061961:CDS | 35.0% | |
| TGACTGTTGAGCCAAATTAA+AGG | + | chr6.2:20928806-20928825 | None:intergenic | 35.0% | |
| TGCATGATACTGTCAATCAT+TGG | + | chr6.2:20927002-20927021 | None:intergenic | 35.0% | |
| TTTGTCATTCGCAACTTTCT+TGG | + | chr6.2:20927636-20927655 | None:intergenic | 35.0% | |
| ! | AGATTTTTGACACTCCAAAG+AGG | - | chr6.2:20928399-20928418 | MS.gene061961:CDS | 35.0% |
| ! | AGTGGAAGAGATTTTATGGA+TGG | - | chr6.2:20927704-20927723 | MS.gene061961:CDS | 35.0% |
| ! | CTTTTGGATATTCCATGTCT+AGG | + | chr6.2:20928034-20928053 | None:intergenic | 35.0% |
| ! | GACTAATTTGCATATGGGTT+TGG | - | chr6.2:20927334-20927353 | MS.gene061961:intron | 35.0% |
| ! | TGATGAAGTGTTTAGATCCA+CGG | - | chr6.2:20927507-20927526 | MS.gene061961:intron | 35.0% |
| !! | ATTCATGTAGGAGTGTCAAT+AGG | - | chr6.2:20927864-20927883 | MS.gene061961:CDS | 35.0% |
| !! | CTCTTGTTGATTCGGATAAT+TGG | - | chr6.2:20927237-20927256 | MS.gene061961:intron | 35.0% |
| !! | TCTTTGGATAGTTTGAGTTG+TGG | - | chr6.2:20927194-20927213 | MS.gene061961:CDS | 35.0% |
| !! | TTGTTGATTCGGATAATTGG+CGG | - | chr6.2:20927240-20927259 | MS.gene061961:intron | 35.0% |
| AAATGTCAGTGGAGAGTCTA+TGG | - | chr6.2:20927436-20927455 | MS.gene061961:intron | 40.0% | |
| ACTTACAACAGGACTTGTGT+TGG | + | chr6.2:20928059-20928078 | None:intergenic | 40.0% | |
| AGACTCTTGTACCTTCGAAT+CGG | + | chr6.2:20928479-20928498 | None:intergenic | 40.0% | |
| AGGTACAAGAGTCTATCATC+GGG | - | chr6.2:20928485-20928504 | MS.gene061961:CDS | 40.0% | |
| ATCCATACCATTTCTCTCCT+CGG | + | chr6.2:20927954-20927973 | None:intergenic | 40.0% | |
| ATGGATCACACGTTTCTGAA+TGG | - | chr6.2:20927968-20927987 | MS.gene061961:CDS | 40.0% | |
| ATGGATGGAGATAGTTCTTC+AGG | - | chr6.2:20927719-20927738 | MS.gene061961:CDS | 40.0% | |
| CAATGGCCACACCTTTAATT+TGG | - | chr6.2:20928792-20928811 | MS.gene061961:CDS | 40.0% | |
| CTTTCACGAACATCTTCAGA+AGG | + | chr6.2:20928683-20928702 | None:intergenic | 40.0% | |
| GCAAATCACGACAAGTATGA+TGG | - | chr6.2:20928560-20928579 | MS.gene061961:CDS | 40.0% | |
| GCTGTATGAAGTTCTTGCTA+GGG | - | chr6.2:20926956-20926975 | MS.gene061961:CDS | 40.0% | |
| GGAGGTTGAACAAGTAATTG+AGG | - | chr6.2:20927541-20927560 | MS.gene061961:intron | 40.0% | |
| GTGGATCTAAACACTTCATC+AGG | + | chr6.2:20927508-20927527 | None:intergenic | 40.0% | |
| GTTGAGCCAAATTAAAGGTG+TGG | + | chr6.2:20928801-20928820 | None:intergenic | 40.0% | |
| TGGATGGTAATTCTCAGAAG+CGG | - | chr6.2:20927456-20927475 | MS.gene061961:intron | 40.0% | |
| ! | ATTCCATGTCTAGGACTTCT+GGG | + | chr6.2:20928025-20928044 | None:intergenic | 40.0% |
| ! | CTTGAAGGCTCTTGTTGATT+CGG | - | chr6.2:20927229-20927248 | MS.gene061961:intron | 40.0% |
| ! | TATTCCATGTCTAGGACTTC+TGG | + | chr6.2:20928026-20928045 | None:intergenic | 40.0% |
| ! | TCTTCAACAAGCTTGTTCGA+GGG | - | chr6.2:20927064-20927083 | MS.gene061961:CDS | 40.0% |
| ! | TTTGGAGCCTTGAAAATGGA+GGG | - | chr6.2:20927891-20927910 | MS.gene061961:CDS | 40.0% |
| ! | TTTTCAGCGCGAACAATTTG+TGG | + | chr6.2:20928716-20928735 | None:intergenic | 40.0% |
| !! | AAGCTTTGGAGCCTTGAAAA+TGG | - | chr6.2:20927887-20927906 | MS.gene061961:CDS | 40.0% |
| !! | AGATCCACGGAGTATTTTCT+CGG | - | chr6.2:20927520-20927539 | MS.gene061961:intron | 40.0% |
| !! | AGGACTTGTGTTGGTACTTT+TGG | + | chr6.2:20928050-20928069 | None:intergenic | 40.0% |
| !! | GTGACTGGTTCCAATTTTAG+TGG | - | chr6.2:20927686-20927705 | MS.gene061961:CDS | 40.0% |
| !! | GTTCTGAAAAACCGATTCGA+AGG | - | chr6.2:20928465-20928484 | MS.gene061961:CDS | 40.0% |
| !! | TCGAACAAGCTTGTTGAAGA+GGG | + | chr6.2:20927064-20927083 | None:intergenic | 40.0% |
| AATGTTGCTGTGGCGTTAGA+AGG | - | chr6.2:20927299-20927318 | MS.gene061961:intron | 45.0% | |
| ATTCCATATCTAGCGACAGC+TGG | + | chr6.2:20927095-20927114 | None:intergenic | 45.0% | |
| CAATCAGAACTCTCATCGGT+TGG | + | chr6.2:20928446-20928465 | None:intergenic | 45.0% | |
| CGCTGTATGAAGTTCTTGCT+AGG | - | chr6.2:20926955-20926974 | MS.gene061961:CDS | 45.0% | |
| CTCGAATACTTCCCTGGATA+TGG | - | chr6.2:20927788-20927807 | MS.gene061961:CDS | 45.0% | |
| CTGCGCATGTTAAATGTCAG+TGG | - | chr6.2:20927425-20927444 | MS.gene061961:intron | 45.0% | |
| GAACATCTTCAGAAGGCTTC+TGG | + | chr6.2:20928676-20928695 | None:intergenic | 45.0% | |
| GAAGTTCTTGCTAGGGTTCA+TGG | - | chr6.2:20926963-20926982 | MS.gene061961:CDS | 45.0% | |
| GAATTCTCCAGACACAGTAC+CGG | + | chr6.2:20926928-20926947 | None:intergenic | 45.0% | |
| GACTCTGGTGAATCAGATGT+GGG | + | chr6.2:20927761-20927780 | None:intergenic | 45.0% | |
| GATCACACGTTTCTGAATGG+CGG | - | chr6.2:20927971-20927990 | MS.gene061961:CDS | 45.0% | |
| GGAGATAGTTCTTCAGGTGA+TGG | - | chr6.2:20927725-20927744 | MS.gene061961:CDS | 45.0% | |
| GTGAATCAGATGTGGGAGTA+CGG | + | chr6.2:20927754-20927773 | None:intergenic | 45.0% | |
| GTTGATGTGTCTCTCAAGGA+CGG | - | chr6.2:20927914-20927933 | MS.gene061961:CDS | 45.0% | |
| TATCATCGGGCAACATTGAC+TGG | - | chr6.2:20928498-20928517 | MS.gene061961:CDS | 45.0% | |
| TCAAGCTCTCTTCGTAACAC+AGG | + | chr6.2:20926783-20926802 | None:intergenic | 45.0% | |
| TCTGGTTATCAGCATCAGCA+AGG | + | chr6.2:20928658-20928677 | None:intergenic | 45.0% | |
| TGAAATAGGAGACTCAGCCA+GGG | + | chr6.2:20927816-20927835 | None:intergenic | 45.0% | |
| TGGAATTGATCCAACGATGC+CGG | - | chr6.2:20927109-20927128 | MS.gene061961:CDS | 45.0% | |
| TTGAAATAGGAGACTCAGCC+AGG | + | chr6.2:20927817-20927836 | None:intergenic | 45.0% | |
| TTGGAGCCTTGAAAATGGAG+GGG | - | chr6.2:20927892-20927911 | MS.gene061961:CDS | 45.0% | |
| ! | AAAGAGTACGGAAGCTCATG+CGG | - | chr6.2:20928584-20928603 | MS.gene061961:CDS | 45.0% |
| ! | ACCAAGCGCAGATTTGTTTG+CGG | - | chr6.2:20928749-20928768 | MS.gene061961:CDS | 45.0% |
| ! | AGACTTTAGCTTCGAGTGCA+GGG | - | chr6.2:20927033-20927052 | MS.gene061961:CDS | 45.0% |
| ! | CATCAACCCCTCCATTTTCA+AGG | + | chr6.2:20927901-20927920 | None:intergenic | 45.0% |
| ! | CTCTTCAACAAGCTTGTTCG+AGG | - | chr6.2:20927063-20927082 | MS.gene061961:CDS | 45.0% |
| ! | GAATGGCGGAGATTTAACTG+AGG | - | chr6.2:20927985-20928004 | MS.gene061961:CDS | 45.0% |
| ! | GCGGTTTGCTTCTGATGAAA+TGG | - | chr6.2:20927259-20927278 | MS.gene061961:intron | 45.0% |
| ! | GGAGTGTCAATAGGAAGCTT+TGG | - | chr6.2:20927873-20927892 | MS.gene061961:CDS | 45.0% |
| ! | TTCCATGTCTAGGACTTCTG+GGG | + | chr6.2:20928024-20928043 | None:intergenic | 45.0% |
| !! | CGTGATTTGCTAAACCACTC+TGG | + | chr6.2:20928550-20928569 | None:intergenic | 45.0% |
| !! | CTCGAACAAGCTTGTTGAAG+AGG | + | chr6.2:20927065-20927084 | None:intergenic | 45.0% |
| !! | CTTTGGAGCCTTGAAAATGG+AGG | - | chr6.2:20927890-20927909 | MS.gene061961:CDS | 45.0% |
| !! | GTTTCTGAGACCAAGGAAAC+CGG | - | chr6.2:20926906-20926925 | MS.gene061961:CDS | 45.0% |
| !! | TGAACGCCATTTTATCGGAC+TGG | + | chr6.2:20927580-20927599 | None:intergenic | 45.0% |
| !! | TGCTCAAGTTTCTGAGACCA+AGG | - | chr6.2:20926899-20926918 | MS.gene061961:CDS | 45.0% |
| AAGGAAACCGGTACTGTGTC+TGG | - | chr6.2:20926918-20926937 | MS.gene061961:CDS | 50.0% | |
| AATTGATCCAACGATGCCGG+AGG | - | chr6.2:20927112-20927131 | MS.gene061961:CDS | 50.0% | |
| ACCTCCGAGAAAATACTCCG+TGG | + | chr6.2:20927527-20927546 | None:intergenic | 50.0% | |
| AGAGAGCGAATGAGCCTCTT+TGG | + | chr6.2:20928416-20928435 | None:intergenic | 50.0% | |
| AGGCATGAAGAGTCCTGCTT+CGG | - | chr6.2:20927664-20927683 | MS.gene061961:CDS | 50.0% | |
| ATCAGCATCAGCAAGGTCGT+CGG | + | chr6.2:20928651-20928670 | None:intergenic | 50.0% | |
| ATCCCCAGAAGTCCTAGACA+TGG | - | chr6.2:20928019-20928038 | MS.gene061961:CDS | 50.0% | |
| CGACTCTGGTGAATCAGATG+TGG | + | chr6.2:20927762-20927781 | None:intergenic | 50.0% | |
| CGTACTCTCGAATACTTCCC+TGG | - | chr6.2:20927782-20927801 | MS.gene061961:CDS | 50.0% | |
| CTAACGCCACAGCAACATTC+TGG | + | chr6.2:20927298-20927317 | None:intergenic | 50.0% | |
| CTCGACTGCTCATACAATCC+GGG | - | chr6.2:20927402-20927421 | MS.gene061961:intron | 50.0% | |
| GACATTTAACATGCGCAGCC+CGG | + | chr6.2:20927423-20927442 | None:intergenic | 50.0% | |
| GCAGTGCCAGTCCGATAAAA+TGG | - | chr6.2:20927571-20927590 | MS.gene061961:CDS | 50.0% | |
| GCGGTTCGCAGCTATTCAAA+TGG | - | chr6.2:20927475-20927494 | MS.gene061961:intron | 50.0% | |
| GCTCGACTGCTCATACAATC+CGG | - | chr6.2:20927401-20927420 | MS.gene061961:intron | 50.0% | |
| GGTTTGCCAGAATGTTGCTG+TGG | - | chr6.2:20927289-20927308 | MS.gene061961:intron | 50.0% | |
| GTCAGTGGAGAGTCTATGGA+TGG | - | chr6.2:20927440-20927459 | MS.gene061961:intron | 50.0% | |
| GTTCCAGCTGTCGCTAGATA+TGG | - | chr6.2:20927089-20927108 | MS.gene061961:CDS | 50.0% | |
| TCCGCAAACAAATCTGCGCT+TGG | + | chr6.2:20928753-20928772 | None:intergenic | 50.0% | |
| TGACTCGCTCACGAGTTCTT+TGG | - | chr6.2:20927178-20927197 | MS.gene061961:CDS | 50.0% | |
| TGCCGAGGAGAGAAATGGTA+TGG | - | chr6.2:20927949-20927968 | MS.gene061961:CDS | 50.0% | |
| TGGTGCAGCTCTTTGCTTGA+AGG | - | chr6.2:20927214-20927233 | MS.gene061961:CDS | 50.0% | |
| TTCTTATCCTCCGGCATCGT+TGG | + | chr6.2:20927122-20927141 | None:intergenic | 50.0% | |
| ! | AAGAGTACGGAAGCTCATGC+GGG | - | chr6.2:20928585-20928604 | MS.gene061961:CDS | 50.0% |
| ! | CAGACTTTAGCTTCGAGTGC+AGG | - | chr6.2:20927032-20927051 | MS.gene061961:CDS | 50.0% |
| ! | TATTCGAGAGTACGCGACTC+TGG | + | chr6.2:20927776-20927795 | None:intergenic | 50.0% |
| !! | AGACACAGTACCGGTTTCCT+TGG | + | chr6.2:20926919-20926938 | None:intergenic | 50.0% |
| !! | AGGGGTTGATGTGTCTCTCA+AGG | - | chr6.2:20927910-20927929 | MS.gene061961:CDS | 50.0% |
| !! | CTGCGCTTGGTCTTTTGAAG+TGG | + | chr6.2:20928740-20928759 | None:intergenic | 50.0% |
| !! | TCAAGTGCCGAGGAGAGAAA+TGG | - | chr6.2:20927944-20927963 | MS.gene061961:CDS | 50.0% |
| !! | TCCACGGAGTATTTTCTCGG+AGG | - | chr6.2:20927523-20927542 | MS.gene061961:intron | 50.0% |
| AAGAGTCCTGCTTCGGTGAC+TGG | - | chr6.2:20927671-20927690 | MS.gene061961:CDS | 55.0% | |
| AGAGTACGGAAGCTCATGCG+GGG | - | chr6.2:20928586-20928605 | MS.gene061961:CDS | 55.0% | |
| CAGCCAGGGATCCATATCCA+GGG | + | chr6.2:20927802-20927821 | None:intergenic | 55.0% | |
| CTCGTGAGCGAGTCAGATAG+AGG | + | chr6.2:20927173-20927192 | None:intergenic | 55.0% | |
| CTTCCCTGGATATGGATCCC+TGG | - | chr6.2:20927796-20927815 | MS.gene061961:CDS | 55.0% | |
| GGGGATGGACAGTATCAAGG+AGG | - | chr6.2:20928605-20928624 | MS.gene061961:CDS | 55.0% | |
| TCAGCCAGGGATCCATATCC+AGG | + | chr6.2:20927803-20927822 | None:intergenic | 55.0% | |
| TGCGGGGATGGACAGTATCA+AGG | - | chr6.2:20928602-20928621 | MS.gene061961:CDS | 55.0% | |
| TTGGAACCAGTCACCGAAGC+AGG | + | chr6.2:20927680-20927699 | None:intergenic | 55.0% | |
| TACGGAAGCTCATGCGGGGA+TGG | - | chr6.2:20928590-20928609 | MS.gene061961:CDS | 60.0% | |
| ! | CGGTCTGTTCTCAAGTGCCG+AGG | - | chr6.2:20927934-20927953 | MS.gene061961:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 20926762 | 20928856 | 20926762 | ID=MS.gene061961 |
| chr6.2 | mRNA | 20926762 | 20928856 | 20926762 | ID=MS.gene061961.t1;Parent=MS.gene061961 |
| chr6.2 | exon | 20927546 | 20928856 | 20927546 | ID=MS.gene061961.t1.exon1;Parent=MS.gene061961.t1 |
| chr6.2 | CDS | 20927546 | 20928856 | 20927546 | ID=cds.MS.gene061961.t1;Parent=MS.gene061961.t1 |
| chr6.2 | exon | 20926762 | 20927241 | 20926762 | ID=MS.gene061961.t1.exon2;Parent=MS.gene061961.t1 |
| chr6.2 | CDS | 20926762 | 20927241 | 20926762 | ID=cds.MS.gene061961.t1;Parent=MS.gene061961.t1 |
| Gene Sequence |
| Protein sequence |
