AlfalfaGEDB | MS.gene050901

M. sativa cultivar XinJiangDaYe / MS.gene050901

KEGG: K11254
GO: GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005634 GO:0032991 GO:0032993 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044815 GO:0046982 GO:0046983 GO:0097159 GO:0110165 GO:1901363
PFAM: PF15511.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050901.t1	KCW52694.1	99	103	1	0	1	103	4	106	2.80E-47	197.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050901.t1	P62785	99.0	103	1	0	1	103	1	103	6.8e-50	197.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050901.t1	M5VRN0	99.0	103	1	0	1	103	1	103	2.1e-47	197.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene050901	0.825076	5.71E-54	-1.69E-46
MS.gene049350	MS.gene050901	0.822986	1.77E-53	-1.69E-46
MS.gene049807	MS.gene050901	0.800865	1.18E-48	-1.69E-46
MS.gene049821	MS.gene050901	0.841511	4.55E-58	-1.69E-46
MS.gene050020	MS.gene050901	0.803434	3.49E-49	-1.69E-46
MS.gene050689	MS.gene050901	0.811375	7.22E-51	-1.69E-46
MS.gene050807	MS.gene050901	0.814179	1.76E-51	-1.69E-46
MS.gene050838	MS.gene050901	0.80389	2.81E-49	-1.69E-46
MS.gene050901	MS.gene051247	0.812296	4.55E-51	-1.69E-46
MS.gene050901	MS.gene051328	0.801649	8.15E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050901.t1	MTR_7g029510	99.029	103	1	1	103	1	103	9.33e-68	198
MS.gene050901.t1	MTR_7g099610	99.029	103	1	1	103	1	103	9.33e-68	198
MS.gene050901.t1	MTR_5g063620	99.029	103	1	1	103	1	103	9.33e-68	198
MS.gene050901.t1	MTR_4g061827	99.029	103	1	1	103	1	103	9.33e-68	198
MS.gene050901.t1	MTR_4g061920	99.029	103	1	1	103	1	103	9.33e-68	198
MS.gene050901.t1	MTR_3g462400	99.029	103	1	1	103	1	103	9.33e-68	198
MS.gene050901.t1	MTR_3g054380	99.029	103	1	1	103	1	103	9.33e-68	198
MS.gene050901.t1	MTR_3g462730	99.029	103	1	1	103	1	103	9.33e-68	198
MS.gene050901.t1	MTR_3g462510	99.029	103	1	1	103	1	103	9.33e-68	198
MS.gene050901.t1	MTR_3g070920	99.029	103	1	1	103	1	103	9.33e-68	198

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050901.t1	AT5G59970	99.029	103	1	1	103	1	103	9.77e-68	198
MS.gene050901.t1	AT5G59690	99.029	103	1	1	103	1	103	9.77e-68	198
MS.gene050901.t1	AT5G59970	99.029	103	1	1	103	1	103	9.77e-68	198
MS.gene050901.t1	AT3G46320	99.029	103	1	1	103	1	103	9.77e-68	198
MS.gene050901.t1	AT3G45930	99.029	103	1	1	103	1	103	9.77e-68	198
MS.gene050901.t1	AT3G53730	99.029	103	1	1	103	1	103	9.77e-68	198
MS.gene050901.t1	AT2G28740	99.029	103	1	1	103	1	103	9.77e-68	198
MS.gene050901.t1	AT1G07660	99.029	103	1	1	103	1	103	9.77e-68	198
MS.gene050901.t1	AT1G07820	99.029	103	1	1	103	1	103	9.77e-68	198
MS.gene050901.t1	AT1G07820	99.029	103	1	1	103	1	103	9.77e-68	198

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Find 32 sgRNAs with CRISPR-Local

Find 29 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTCAGGCAGAGGAAA+AGG	0.476544	7.1:+3278026	None:intergenic
AAGACGACGAATCGCAGGCT+TGG	0.548379	7.1:-3278120	None:intergenic
AGCATAAACAACATCCATGG+CGG	0.735882	7.1:-3278276	None:intergenic
AGGACTTTATATGGTTTCAG+TGG	0.568394	7.1:+3278314	MS.gene050901:CDS
AGGAGGAAAGGGATTAGGAA+AGG	0.515958	7.1:+3278046	MS.gene050901:CDS
AGGCAGAGGAAAAGGAGGAA+AGG	0.557567	7.1:+3278034	MS.gene050901:CDS
AGGCAGGGAAGGACTTTATA+TGG	0.314150	7.1:+3278305	MS.gene050901:CDS
ATGCTCTGAAGAGGCAGGGA+AGG	0.564763	7.1:+3278294	MS.gene050901:CDS
ATGTCAGGCAGAGGAAAAGG+AGG	0.661131	7.1:+3278029	MS.gene050901:CDS
ATGTTGTTTATGCTCTGAAG+AGG	0.672733	7.1:+3278285	MS.gene050901:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGACTTTATATGGTTTCAG+TGG	+	chr7.1:3278314-3278333	MS.gene050901:CDS	35.0%
CTCATATATGAAGAAACTCG+CGG	+	chr7.1:3278176-3278195	MS.gene050901:CDS	35.0%
AGCATAAACAACATCCATGG+CGG	-	chr7.1:3278279-3278298	None:intergenic	40.0%
CAGAGCATAAACAACATCCA+TGG	-	chr7.1:3278282-3278301	None:intergenic	40.0%
TTACATACACTGAACACGCT+AGG	+	chr7.1:3278240-3278259	MS.gene050901:CDS	40.0%
AGGAGGAAAGGGATTAGGAA+AGG	+	chr7.1:3278046-3278065	MS.gene050901:CDS	45.0%
AGGCAGGGAAGGACTTTATA+TGG	+	chr7.1:3278305-3278324	MS.gene050901:CDS	45.0%
CATCACGAATCACATTCTCG+AGG	-	chr7.1:3278217-3278236	None:intergenic	45.0%
CATTCTCGAGGAAGATCTTG+AGG	-	chr7.1:3278205-3278224	None:intergenic	45.0%
GGAAAAGGAGGAAAGGGATT+AGG	+	chr7.1:3278041-3278060	MS.gene050901:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	3278029	3278340	3278029	ID=MS.gene050901
chr7.1	mRNA	3278029	3278340	3278029	ID=MS.gene050901.t1;Parent=MS.gene050901
chr7.1	exon	3278029	3278340	3278029	ID=MS.gene050901.t1.exon1;Parent=MS.gene050901.t1
chr7.1	CDS	3278029	3278340	3278029	ID=cds.MS.gene050901.t1;Parent=MS.gene050901.t1

Gene Sequence	>MS.gene050901 ATGTCAGGCAGAGGAAAAGGAGGAAAGGGATTAGGAAAGGGAGGAGCAAAGAGGCACAGAAAAGTGCTTCGTGACAACATTCAAGGAATAACCAAGCCTGCGATTCGTCGTCTTGCAAGGCGTGGCGGTGTTAAGAGAATCAGTGGTCTCATATATGAAGAAACTCGCGGTGTCCTCAAGATCTTCCTCGAGAATGTGATTCGTGATGCTGTTACATACACTGAACACGCTAGGAGGAAGACTGTTACCGCCATGGATGTTGTTTATGCTCTGAAGAGGCAGGGAAGGACTTTATATGGTTTCAGTGGTTGA
Protein sequence	>MS.gene050901.t1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFSG