Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061990.t1 | PNX71799.1 | 61.8 | 322 | 89 | 2 | 211 | 505 | 197 | 511 | 3.20E-97 | 365.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061990.t1 | Q9SZL8 | 38.2 | 191 | 112 | 2 | 41 | 226 | 58 | 247 | 1.5e-26 | 122.5 |
MS.gene061990.t1 | Q9SZL8 | 33.3 | 135 | 89 | 1 | 233 | 366 | 507 | 641 | 4.0e-16 | 87.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061990.t1 | A0A2K3KZX1 | 61.8 | 322 | 89 | 2 | 211 | 505 | 197 | 511 | 2.3e-97 | 365.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene061990.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051594 | MS.gene061990 | 0.808345 | 3.24E-50 | -1.69E-46 |
MS.gene052447 | MS.gene061990 | 0.820595 | 6.31E-53 | -1.69E-46 |
MS.gene053974 | MS.gene061990 | 0.800366 | 1.49E-48 | -1.69E-46 |
MS.gene05415 | MS.gene061990 | 0.800946 | 1.14E-48 | -1.69E-46 |
MS.gene059458 | MS.gene061990 | 0.815169 | 1.06E-51 | -1.69E-46 |
MS.gene060521 | MS.gene061990 | 0.801976 | 6.98E-49 | -1.69E-46 |
MS.gene060634 | MS.gene061990 | -0.801836 | 7.46E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061990.t1 | MTR_0402s0040 | 29.756 | 410 | 206 | 10 | 55 | 425 | 25 | 391 | 4.38e-42 | 157 |
MS.gene061990.t1 | MTR_7g074790 | 32.828 | 198 | 100 | 5 | 52 | 246 | 6 | 173 | 1.04e-22 | 97.4 |
MS.gene061990.t1 | MTR_2g070590 | 40.952 | 105 | 58 | 3 | 55 | 156 | 16 | 119 | 1.70e-19 | 84.7 |
MS.gene061990.t1 | MTR_4g067290 | 34.524 | 168 | 91 | 6 | 56 | 211 | 56 | 216 | 4.81e-18 | 84.0 |
MS.gene061990.t1 | MTR_4g067290 | 34.524 | 168 | 91 | 6 | 56 | 211 | 76 | 236 | 6.52e-18 | 84.0 |
MS.gene061990.t1 | MTR_4g067290 | 34.524 | 168 | 91 | 6 | 56 | 211 | 116 | 276 | 8.48e-18 | 84.7 |
MS.gene061990.t1 | MTR_6g017200 | 41.837 | 98 | 53 | 3 | 55 | 149 | 57 | 153 | 8.66e-18 | 80.9 |
MS.gene061990.t1 | MTR_6g051425 | 28.652 | 178 | 120 | 2 | 58 | 229 | 19 | 195 | 9.56e-18 | 85.1 |
MS.gene061990.t1 | MTR_4g067290 | 33.735 | 166 | 93 | 6 | 56 | 211 | 56 | 214 | 2.88e-17 | 81.6 |
MS.gene061990.t1 | MTR_4g067290 | 33.735 | 166 | 93 | 6 | 56 | 211 | 74 | 232 | 4.23e-17 | 81.6 |
MS.gene061990.t1 | MTR_4g067290 | 33.735 | 166 | 93 | 6 | 56 | 211 | 76 | 234 | 4.51e-17 | 81.6 |
MS.gene061990.t1 | MTR_5g039760 | 32.955 | 176 | 89 | 4 | 53 | 225 | 7 | 156 | 5.03e-17 | 79.7 |
MS.gene061990.t1 | MTR_1g057920 | 43.478 | 92 | 46 | 4 | 56 | 143 | 34 | 123 | 8.77e-17 | 77.0 |
MS.gene061990.t1 | MTR_2g098920 | 32.353 | 204 | 110 | 9 | 50 | 242 | 76 | 262 | 1.78e-16 | 80.1 |
MS.gene061990.t1 | MTR_7g061980 | 37.931 | 116 | 66 | 3 | 53 | 165 | 7 | 119 | 3.75e-16 | 75.1 |
MS.gene061990.t1 | MTR_5g015480 | 40.323 | 124 | 70 | 3 | 55 | 175 | 55 | 177 | 6.51e-16 | 78.2 |
MS.gene061990.t1 | MTR_2g098880 | 37.069 | 116 | 60 | 3 | 52 | 159 | 57 | 167 | 2.75e-15 | 76.3 |
MS.gene061990.t1 | MTR_3g006370 | 34.356 | 163 | 97 | 6 | 19 | 177 | 18 | 174 | 2.99e-15 | 75.5 |
MS.gene061990.t1 | MTR_4g102720 | 30.000 | 160 | 74 | 4 | 52 | 209 | 3 | 126 | 3.37e-15 | 75.5 |
MS.gene061990.t1 | MTR_2g098880 | 37.069 | 116 | 60 | 3 | 52 | 159 | 69 | 179 | 3.87e-15 | 75.9 |
MS.gene061990.t1 | MTR_1g070355 | 28.571 | 168 | 113 | 3 | 60 | 222 | 78 | 243 | 5.21e-15 | 78.2 |
MS.gene061990.t1 | MTR_5g076070 | 27.805 | 205 | 130 | 6 | 16 | 215 | 24 | 215 | 6.44e-15 | 75.9 |
MS.gene061990.t1 | MTR_7g113010 | 32.812 | 128 | 68 | 3 | 56 | 180 | 457 | 569 | 2.22e-14 | 76.3 |
MS.gene061990.t1 | MTR_0137s0040 | 42.857 | 77 | 37 | 2 | 40 | 110 | 14 | 89 | 3.35e-14 | 69.3 |
MS.gene061990.t1 | MTR_1g013060 | 30.055 | 183 | 115 | 4 | 45 | 216 | 10 | 190 | 4.52e-13 | 69.3 |
MS.gene061990.t1 | MTR_1g008290 | 34.259 | 108 | 67 | 2 | 122 | 229 | 18 | 121 | 1.62e-12 | 65.5 |
MS.gene061990.t1 | MTR_7g446520 | 29.825 | 171 | 105 | 4 | 60 | 230 | 92 | 247 | 7.07e-12 | 67.4 |
MS.gene061990.t1 | MTR_1g019850 | 34.532 | 139 | 78 | 4 | 53 | 187 | 67 | 196 | 1.75e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061990.t1 | AT4G38180 | 38.220 | 191 | 112 | 2 | 41 | 226 | 58 | 247 | 2.07e-27 | 117 |
MS.gene061990.t1 | AT4G38180 | 33.333 | 135 | 89 | 1 | 233 | 366 | 507 | 641 | 1.06e-18 | 90.5 |
MS.gene061990.t1 | AT4G15090 | 32.990 | 194 | 118 | 6 | 44 | 229 | 36 | 225 | 3.01e-19 | 92.0 |
MS.gene061990.t1 | AT4G15090 | 37.383 | 107 | 62 | 2 | 307 | 413 | 557 | 658 | 1.18e-12 | 71.2 |
MS.gene061990.t1 | AT4G15090 | 32.990 | 194 | 118 | 6 | 44 | 229 | 36 | 225 | 3.01e-19 | 92.0 |
MS.gene061990.t1 | AT4G15090 | 37.383 | 107 | 62 | 2 | 307 | 413 | 557 | 658 | 1.18e-12 | 71.2 |
MS.gene061990.t1 | AT4G15090 | 32.990 | 194 | 118 | 6 | 44 | 229 | 36 | 225 | 3.01e-19 | 92.0 |
MS.gene061990.t1 | AT4G15090 | 37.383 | 107 | 62 | 2 | 307 | 413 | 557 | 658 | 1.18e-12 | 71.2 |
MS.gene061990.t1 | AT4G15090 | 32.990 | 194 | 118 | 6 | 44 | 229 | 36 | 225 | 3.01e-19 | 92.0 |
MS.gene061990.t1 | AT4G15090 | 37.383 | 107 | 62 | 2 | 307 | 413 | 557 | 658 | 1.18e-12 | 71.2 |
MS.gene061990.t1 | AT4G15090 | 32.990 | 194 | 118 | 6 | 44 | 229 | 36 | 225 | 3.01e-19 | 92.0 |
MS.gene061990.t1 | AT4G15090 | 37.383 | 107 | 62 | 2 | 307 | 413 | 557 | 658 | 1.18e-12 | 71.2 |
MS.gene061990.t1 | AT3G59470 | 43.119 | 109 | 58 | 3 | 56 | 162 | 70 | 176 | 1.22e-18 | 86.3 |
MS.gene061990.t1 | AT3G59470 | 43.119 | 109 | 58 | 3 | 56 | 162 | 70 | 176 | 1.22e-18 | 86.3 |
MS.gene061990.t1 | AT3G59470 | 43.119 | 109 | 58 | 3 | 56 | 162 | 82 | 188 | 1.81e-18 | 85.9 |
MS.gene061990.t1 | AT4G38170 | 30.827 | 133 | 91 | 1 | 228 | 359 | 267 | 399 | 6.41e-17 | 84.3 |
MS.gene061990.t1 | AT3G06250 | 33.088 | 136 | 90 | 1 | 246 | 380 | 590 | 725 | 4.82e-16 | 82.0 |
MS.gene061990.t1 | AT3G06250 | 31.818 | 154 | 91 | 4 | 3 | 156 | 139 | 278 | 1.29e-14 | 77.4 |
MS.gene061990.t1 | AT3G06250 | 33.553 | 152 | 74 | 5 | 46 | 185 | 21 | 157 | 6.06e-14 | 75.5 |
MS.gene061990.t1 | AT3G06250 | 33.088 | 136 | 90 | 1 | 246 | 380 | 590 | 725 | 4.82e-16 | 82.0 |
MS.gene061990.t1 | AT3G06250 | 31.818 | 154 | 91 | 4 | 3 | 156 | 139 | 278 | 1.29e-14 | 77.4 |
MS.gene061990.t1 | AT3G06250 | 33.553 | 152 | 74 | 5 | 46 | 185 | 21 | 157 | 6.06e-14 | 75.5 |
MS.gene061990.t1 | AT3G06250 | 33.088 | 136 | 90 | 1 | 246 | 380 | 590 | 725 | 4.82e-16 | 82.0 |
MS.gene061990.t1 | AT3G06250 | 31.818 | 154 | 91 | 4 | 3 | 156 | 139 | 278 | 1.29e-14 | 77.4 |
MS.gene061990.t1 | AT3G06250 | 33.553 | 152 | 74 | 5 | 46 | 185 | 21 | 157 | 6.06e-14 | 75.5 |
MS.gene061990.t1 | AT5G18960 | 39.535 | 129 | 57 | 4 | 54 | 173 | 41 | 157 | 5.56e-16 | 81.6 |
MS.gene061990.t1 | AT5G18960 | 32.353 | 136 | 91 | 1 | 246 | 380 | 614 | 749 | 1.15e-14 | 77.8 |
MS.gene061990.t1 | AT5G18960 | 38.614 | 101 | 50 | 2 | 56 | 156 | 211 | 299 | 1.60e-12 | 70.9 |
MS.gene061990.t1 | AT5G18960 | 39.535 | 129 | 57 | 4 | 54 | 173 | 41 | 157 | 5.56e-16 | 81.6 |
MS.gene061990.t1 | AT5G18960 | 32.353 | 136 | 91 | 1 | 246 | 380 | 614 | 749 | 1.15e-14 | 77.8 |
MS.gene061990.t1 | AT5G18960 | 38.614 | 101 | 50 | 2 | 56 | 156 | 211 | 299 | 1.60e-12 | 70.9 |
MS.gene061990.t1 | AT4G12850 | 36.697 | 109 | 65 | 3 | 48 | 156 | 5 | 109 | 9.67e-16 | 74.7 |
MS.gene061990.t1 | AT3G07500 | 40.000 | 105 | 60 | 2 | 54 | 156 | 31 | 134 | 4.25e-15 | 75.1 |
MS.gene061990.t1 | AT4G12850 | 35.714 | 112 | 68 | 3 | 45 | 156 | 2 | 109 | 4.61e-15 | 72.8 |
MS.gene061990.t1 | AT4G12850 | 36.364 | 110 | 66 | 3 | 47 | 156 | 4 | 109 | 7.54e-15 | 73.6 |
MS.gene061990.t1 | AT2G27110 | 34.959 | 123 | 76 | 2 | 303 | 425 | 523 | 641 | 8.56e-15 | 78.2 |
MS.gene061990.t1 | AT2G27110 | 34.959 | 123 | 76 | 2 | 303 | 425 | 523 | 641 | 8.56e-15 | 78.2 |
MS.gene061990.t1 | AT2G27110 | 34.959 | 123 | 76 | 2 | 303 | 425 | 378 | 496 | 9.54e-15 | 77.8 |
MS.gene061990.t1 | AT1G10240 | 28.500 | 200 | 127 | 7 | 46 | 232 | 35 | 231 | 1.61e-14 | 77.0 |
MS.gene061990.t1 | AT1G10240 | 28.500 | 200 | 127 | 7 | 46 | 232 | 35 | 231 | 1.61e-14 | 77.0 |
MS.gene061990.t1 | AT1G76320 | 38.168 | 131 | 72 | 4 | 60 | 190 | 1 | 122 | 3.23e-14 | 76.3 |
MS.gene061990.t1 | AT1G76320 | 38.168 | 131 | 72 | 4 | 60 | 190 | 1 | 122 | 3.23e-14 | 76.3 |
MS.gene061990.t1 | AT1G76320 | 38.168 | 131 | 72 | 4 | 60 | 190 | 1 | 122 | 3.26e-14 | 76.3 |
MS.gene061990.t1 | AT1G76320 | 38.168 | 131 | 72 | 4 | 60 | 190 | 1 | 122 | 4.34e-14 | 75.5 |
MS.gene061990.t1 | AT2G43280 | 35.971 | 139 | 81 | 6 | 54 | 187 | 20 | 155 | 1.82e-13 | 70.1 |
MS.gene061990.t1 | AT3G22170 | 28.070 | 171 | 117 | 1 | 233 | 403 | 492 | 656 | 7.28e-13 | 72.0 |
MS.gene061990.t1 | AT3G22170 | 31.293 | 147 | 71 | 5 | 53 | 178 | 67 | 204 | 3.45e-11 | 66.6 |
MS.gene061990.t1 | AT3G22170 | 28.070 | 171 | 117 | 1 | 233 | 403 | 492 | 656 | 7.28e-13 | 72.0 |
MS.gene061990.t1 | AT3G22170 | 31.293 | 147 | 71 | 5 | 53 | 178 | 67 | 204 | 3.45e-11 | 66.6 |
MS.gene061990.t1 | AT2G32250 | 27.602 | 221 | 147 | 5 | 200 | 413 | 387 | 601 | 1.36e-12 | 70.9 |
MS.gene061990.t1 | AT2G32250 | 27.602 | 221 | 147 | 5 | 200 | 413 | 387 | 601 | 1.36e-12 | 70.9 |
MS.gene061990.t1 | AT2G32250 | 27.602 | 221 | 147 | 5 | 200 | 413 | 387 | 601 | 1.36e-12 | 70.9 |
MS.gene061990.t1 | AT2G32250 | 27.602 | 221 | 147 | 5 | 200 | 413 | 387 | 601 | 1.39e-12 | 70.9 |
MS.gene061990.t1 | AT2G32250 | 27.602 | 221 | 147 | 5 | 200 | 413 | 387 | 601 | 1.39e-12 | 70.9 |
MS.gene061990.t1 | AT2G32250 | 27.602 | 221 | 147 | 5 | 200 | 413 | 346 | 560 | 1.45e-12 | 70.9 |
MS.gene061990.t1 | AT2G32250 | 27.602 | 221 | 147 | 5 | 200 | 413 | 346 | 560 | 1.49e-12 | 70.9 |
MS.gene061990.t1 | AT2G32250 | 27.602 | 221 | 147 | 5 | 200 | 413 | 387 | 601 | 1.72e-12 | 70.5 |
MS.gene061990.t1 | AT5G28530 | 26.776 | 183 | 124 | 5 | 54 | 229 | 53 | 232 | 3.77e-12 | 69.3 |
MS.gene061990.t1 | AT5G28530 | 26.776 | 183 | 124 | 5 | 54 | 229 | 53 | 232 | 3.85e-12 | 69.3 |
MS.gene061990.t1 | AT5G28530 | 26.178 | 191 | 132 | 4 | 54 | 237 | 53 | 241 | 4.32e-12 | 69.3 |
MS.gene061990.t1 | AT5G28530 | 26.178 | 191 | 132 | 4 | 54 | 237 | 53 | 241 | 5.03e-12 | 68.9 |
MS.gene061990.t1 | AT5G28530 | 26.178 | 191 | 132 | 4 | 54 | 237 | 53 | 241 | 5.03e-12 | 68.9 |
MS.gene061990.t1 | AT4G19990 | 32.370 | 173 | 99 | 4 | 303 | 464 | 503 | 668 | 5.20e-12 | 68.9 |
MS.gene061990.t1 | AT4G19990 | 30.263 | 152 | 83 | 4 | 37 | 171 | 7 | 152 | 7.69e-12 | 68.6 |
MS.gene061990.t1 | AT4G19990 | 32.370 | 173 | 99 | 4 | 303 | 464 | 503 | 668 | 5.20e-12 | 68.9 |
MS.gene061990.t1 | AT4G19990 | 30.263 | 152 | 83 | 4 | 37 | 171 | 7 | 152 | 7.69e-12 | 68.6 |
MS.gene061990.t1 | AT4G19990 | 32.370 | 173 | 99 | 4 | 303 | 464 | 503 | 668 | 5.24e-12 | 68.9 |
MS.gene061990.t1 | AT4G19990 | 30.263 | 152 | 83 | 4 | 37 | 171 | 7 | 152 | 7.35e-12 | 68.6 |
MS.gene061990.t1 | AT4G19990 | 32.370 | 173 | 99 | 4 | 303 | 464 | 517 | 682 | 5.53e-12 | 68.9 |
MS.gene061990.t1 | AT4G19990 | 30.263 | 152 | 83 | 4 | 37 | 171 | 21 | 166 | 7.50e-12 | 68.6 |
MS.gene061990.t1 | AT4G19990 | 32.370 | 173 | 99 | 4 | 303 | 464 | 446 | 611 | 5.76e-12 | 68.9 |
MS.gene061990.t1 | AT4G19990 | 32.370 | 173 | 99 | 4 | 303 | 464 | 503 | 668 | 5.96e-12 | 68.9 |
MS.gene061990.t1 | AT4G19990 | 30.263 | 152 | 83 | 4 | 37 | 171 | 7 | 152 | 7.22e-12 | 68.6 |
MS.gene061990.t1 | AT4G19990 | 32.370 | 173 | 99 | 4 | 303 | 464 | 503 | 668 | 5.96e-12 | 68.9 |
MS.gene061990.t1 | AT4G19990 | 30.263 | 152 | 83 | 4 | 37 | 171 | 7 | 152 | 7.22e-12 | 68.6 |
MS.gene061990.t1 | AT1G52520 | 40.000 | 105 | 54 | 4 | 56 | 157 | 85 | 183 | 4.70e-11 | 65.9 |
Find 83 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATCTCTTAAGGATGTATTT+TGG | 0.224916 | 6.2:+20494681 | None:intergenic |
TAAATGATTGCTAATATCTT+TGG | 0.285585 | 6.2:+20495853 | None:intergenic |
TTGAAAACATCTTGAGTAAA+AGG | 0.286976 | 6.2:-20494467 | MS.gene061990:CDS |
AAAATCATGTAATCTTGTTT+TGG | 0.288784 | 6.2:-20494895 | MS.gene061990:CDS |
TACGACATGGTTACAAATAT+AGG | 0.291941 | 6.2:-20496578 | None:intergenic |
CTTCAATGCATCTGAAGTTA+TGG | 0.292580 | 6.2:-20494355 | MS.gene061990:CDS |
GAATATGATGTGTGCTTGTT+TGG | 0.292966 | 6.2:-20494843 | MS.gene061990:CDS |
CATCCATCTTGTGAGGTTCT+TGG | 0.298227 | 6.2:-20496539 | MS.gene061990:CDS |
ACGACATGGTTACAAATATA+GGG | 0.303330 | 6.2:-20496577 | None:intergenic |
AATATGATGTGTGCTTGTTT+GGG | 0.314379 | 6.2:-20494842 | MS.gene061990:CDS |
GGGTTGCAAGTTCATGGTTA+TGG | 0.320894 | 6.2:+20496029 | None:intergenic |
TGTTCAGCGCATTTGGTCAT+TGG | 0.324780 | 6.2:-20496097 | MS.gene061990:CDS |
TCAATGTGACTTGTTGAAAA+TGG | 0.330148 | 6.2:+20493909 | None:intergenic |
ATCCATCTTGTGAGGTTCTT+GGG | 0.331730 | 6.2:-20496538 | MS.gene061990:CDS |
ATTGATTGGAAGAAGACATT+TGG | 0.334700 | 6.2:-20493891 | MS.gene061990:CDS |
AACTGGTTGTTCAGCGCATT+TGG | 0.336400 | 6.2:-20496104 | MS.gene061990:CDS |
GCTAGATGATATGCGATATA+AGG | 0.344976 | 6.2:-20495042 | MS.gene061990:intron |
TTTCAACAAGTCACATTGAT+TGG | 0.348376 | 6.2:-20493905 | MS.gene061990:CDS |
TATTCAATGATGGCATCTTC+TGG | 0.352708 | 6.2:+20494994 | None:intergenic |
AGTTGTCTTAAATCGCTCTA+AGG | 0.358984 | 6.2:-20494589 | MS.gene061990:CDS |
CATTCTTAGTCCATCTCTTA+AGG | 0.363154 | 6.2:+20494670 | None:intergenic |
TCAAATTCCATACCAACATT+TGG | 0.374980 | 6.2:+20496316 | None:intergenic |
TTCAATGCATCTGAAGTTAT+GGG | 0.383526 | 6.2:-20494354 | MS.gene061990:CDS |
AATATGTACGCAGGCTTTGT+TGG | 0.387200 | 6.2:-20496265 | MS.gene061990:CDS |
CTATTCGAGTACTTAATCAT+TGG | 0.395437 | 6.2:-20494722 | MS.gene061990:CDS |
ACTTTGATCTTCAGAGTTGA+AGG | 0.396762 | 6.2:+20494797 | None:intergenic |
TTGATTGGAAGAAGACATTT+GGG | 0.424679 | 6.2:-20493890 | MS.gene061990:CDS |
GGATGTGTTCTTGACAATAA+AGG | 0.432868 | 6.2:-20494639 | MS.gene061990:CDS |
TTCTAAAAGAATGAAGGAAA+TGG | 0.436948 | 6.2:-20495828 | MS.gene061990:CDS |
TGGTAACTTATGCCTACTCC+TGG | 0.442738 | 6.2:+20496006 | None:intergenic |
ACCATGATCTGCACTCTGTA+TGG | 0.447129 | 6.2:+20494440 | None:intergenic |
TTTAAATTCTAAAAGAATGA+AGG | 0.449329 | 6.2:-20495834 | MS.gene061990:CDS |
TCAAGCTACTGAAGTTGAAA+TGG | 0.456331 | 6.2:-20495960 | MS.gene061990:CDS |
ATACTGAAGATCATGCATAT+AGG | 0.460388 | 6.2:-20496294 | MS.gene061990:CDS |
TCTGCCACCTCGGATTCTAA+TGG | 0.464189 | 6.2:-20496479 | MS.gene061990:intron |
GTTGAAATGGCGAACCGGTC+CGG | 0.468344 | 6.2:-20495947 | MS.gene061990:CDS |
CGATTTAAGACAACTAACTT+AGG | 0.473995 | 6.2:+20494597 | None:intergenic |
TGTCAAGATACACTAGCAAT+TGG | 0.487500 | 6.2:-20494126 | MS.gene061990:CDS |
AATTAGTTTCTGACGTATGC+CGG | 0.490277 | 6.2:+20495928 | None:intergenic |
CTGAAGTTGAAATGGCGAAC+CGG | 0.490381 | 6.2:-20495952 | MS.gene061990:CDS |
GTTTCTGACGTATGCCGGAC+CGG | 0.493182 | 6.2:+20495933 | None:intergenic |
TGCGGTAGCAATATCATGTA+AGG | 0.495096 | 6.2:-20494553 | MS.gene061990:CDS |
CATTGAAAATGATGTAACCT+TGG | 0.502984 | 6.2:-20496350 | MS.gene061990:CDS |
GGTAACTTATGCCTACTCCT+GGG | 0.504717 | 6.2:+20496007 | None:intergenic |
CTCGAATAGCATGGCAGCAA+AGG | 0.509751 | 6.2:+20494736 | None:intergenic |
TATAGTTCCAAATGTTGGTA+TGG | 0.518391 | 6.2:-20496323 | MS.gene061990:CDS |
GTAACTTATGCCTACTCCTG+GGG | 0.521725 | 6.2:+20496008 | None:intergenic |
GACGATATAGTTCCAAATGT+TGG | 0.524084 | 6.2:-20496328 | MS.gene061990:CDS |
ACTCGCAAAGATATCAGAAC+TGG | 0.524113 | 6.2:-20496121 | MS.gene061990:CDS |
CAAAATACATCCTTAAGAGA+TGG | 0.525845 | 6.2:-20494680 | MS.gene061990:CDS |
CAAGAACCTCACAAGATGGA+TGG | 0.528873 | 6.2:+20496540 | None:intergenic |
AAGAGAATAAAAGATGAAGA+AGG | 0.531444 | 6.2:-20496151 | MS.gene061990:CDS |
TTCATTAGTCGACAAGTTGG+AGG | 0.532160 | 6.2:-20495899 | MS.gene061990:CDS |
ATGATGTTCATATTCAATGA+TGG | 0.538522 | 6.2:+20494984 | None:intergenic |
CTCCCAAGAACCTCACAAGA+TGG | 0.539182 | 6.2:+20496536 | None:intergenic |
TGTGCTTGTTTGGGGCTATG+AGG | 0.552398 | 6.2:-20494833 | MS.gene061990:CDS |
TAAAAGAATGAAGGAAATGG+AGG | 0.559231 | 6.2:-20495825 | MS.gene061990:CDS |
AGAATCCAATGGAAAATATG+TGG | 0.565466 | 6.2:-20496071 | MS.gene061990:CDS |
AAACAAAAGTAAATTAGATG+AGG | 0.568540 | 6.2:-20496218 | MS.gene061990:CDS |
TCCATACAGAGTGCAGATCA+TGG | 0.570905 | 6.2:-20494441 | MS.gene061990:CDS |
ATTTGGAACTATATCGTCCA+AGG | 0.586186 | 6.2:+20496333 | None:intergenic |
GAGTTCATTAGTCGACAAGT+TGG | 0.587463 | 6.2:-20495902 | MS.gene061990:CDS |
AATTGGTATTAATGCAACAC+AGG | 0.588865 | 6.2:-20494109 | MS.gene061990:intron |
AGAATGAAGGAAATGGAGGA+AGG | 0.591377 | 6.2:-20495821 | MS.gene061990:intron |
CAATACAGCTTCTGCCACCT+CGG | 0.591526 | 6.2:-20496489 | MS.gene061990:CDS |
AAGAACCTCACAAGATGGAT+GGG | 0.595753 | 6.2:+20496541 | None:intergenic |
GTCATTGGTCGAGAATCCAA+TGG | 0.597725 | 6.2:-20496082 | MS.gene061990:CDS |
TCCTACCCATCCATCTTGTG+AGG | 0.599686 | 6.2:-20496546 | MS.gene061990:CDS |
CGACATGGTTACAAATATAG+GGG | 0.608427 | 6.2:-20496576 | None:intergenic |
TCAATTACCATTAGAATCCG+AGG | 0.608459 | 6.2:+20496472 | None:intergenic |
TCATTAGTCGACAAGTTGGA+GGG | 0.610088 | 6.2:-20495898 | MS.gene061990:CDS |
GTTGGAGGGAGAGAAAATGT+TGG | 0.613113 | 6.2:-20495884 | MS.gene061990:CDS |
ACCTCACAAGATGGATGGGT+AGG | 0.620207 | 6.2:+20496545 | None:intergenic |
ATATGATGTGTGCTTGTTTG+GGG | 0.629556 | 6.2:-20494841 | MS.gene061990:CDS |
TGGACTAAGAATGCTCGAAG+TGG | 0.632229 | 6.2:-20494660 | MS.gene061990:CDS |
CCAATTATACAGGTAGAGCA+AGG | 0.633531 | 6.2:-20494198 | MS.gene061990:intron |
TCAATGCATCTGAAGTTATG+GGG | 0.650769 | 6.2:-20494353 | MS.gene061990:CDS |
TTCAGAGATAACGAATGCAG+AGG | 0.657872 | 6.2:-20493940 | MS.gene061990:CDS |
GATTAAGTACTCGAATAGCA+TGG | 0.658504 | 6.2:+20494727 | None:intergenic |
TAACTTATGCCTACTCCTGG+GGG | 0.660240 | 6.2:+20496009 | None:intergenic |
AGATGATATGCGATATAAGG+AGG | 0.661490 | 6.2:-20495039 | MS.gene061990:CDS |
TAAGGATTTGTGTCGCACTG+CGG | 0.718952 | 6.2:-20494571 | MS.gene061990:CDS |
ATTACCATTAGAATCCGAGG+TGG | 0.754496 | 6.2:+20496475 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATTTTCTTGTTTTAAAGA+AGG | - | chr6.2:20494275-20494294 | MS.gene061990:intron | 15.0% |
!!! | AATAAAAATTGATTTCAACA+TGG | + | chr6.2:20496443-20496462 | None:intergenic | 15.0% |
!!! | TTTAAATTCTAAAAGAATGA+AGG | - | chr6.2:20494619-20494638 | MS.gene061990:CDS | 15.0% |
!! | AAACAAAAGTAAATTAGATG+AGG | - | chr6.2:20494235-20494254 | MS.gene061990:intron | 20.0% |
!! | ATATTTAGCTAAAAAATTGG+TGG | - | chr6.2:20495948-20495967 | MS.gene061990:CDS | 20.0% |
!! | CTTTAACAAAAAGGAAAAAT+GGG | - | chr6.2:20495252-20495271 | MS.gene061990:intron | 20.0% |
!! | GTCATATTTAGCTAAAAAAT+TGG | - | chr6.2:20495945-20495964 | MS.gene061990:CDS | 20.0% |
!! | TAAATGATTGCTAATATCTT+TGG | + | chr6.2:20494603-20494622 | None:intergenic | 20.0% |
!! | TCTTTAACAAAAAGGAAAAA+TGG | - | chr6.2:20495251-20495270 | MS.gene061990:intron | 20.0% |
!!! | AAAATCATGTAATCTTGTTT+TGG | - | chr6.2:20495558-20495577 | MS.gene061990:intron | 20.0% |
!!! | ATCTAATAACAAACATCTTT+TGG | - | chr6.2:20494741-20494760 | MS.gene061990:CDS | 20.0% |
!!! | TCTAATAACAAACATCTTTT+GGG | - | chr6.2:20494742-20494761 | MS.gene061990:CDS | 20.0% |
! | AAAATAATTAGATCGCTGAA+AGG | + | chr6.2:20495116-20495135 | None:intergenic | 25.0% |
! | AAGAGAATAAAAGATGAAGA+AGG | - | chr6.2:20494302-20494321 | MS.gene061990:intron | 25.0% |
! | ATAATCTTCGCCAAAATAAA+TGG | - | chr6.2:20495218-20495237 | MS.gene061990:intron | 25.0% |
! | ATGATGTTCATATTCAATGA+TGG | + | chr6.2:20495472-20495491 | None:intergenic | 25.0% |
! | CTATATTAAGACCAATTCAA+AGG | + | chr6.2:20494053-20494072 | None:intergenic | 25.0% |
! | GAAAAATTCTAACACGTTAA+AGG | + | chr6.2:20495374-20495393 | None:intergenic | 25.0% |
! | GCAAGATTTCTTTAACAAAA+AGG | - | chr6.2:20495243-20495262 | MS.gene061990:intron | 25.0% |
! | TGATCTGTTAAAATTGTCAT+CGG | + | chr6.2:20494989-20495008 | None:intergenic | 25.0% |
! | TGATGATTAAATCCAACAAA+CGG | + | chr6.2:20494863-20494882 | None:intergenic | 25.0% |
! | TTGAAAACATCTTGAGTAAA+AGG | - | chr6.2:20495986-20496005 | MS.gene061990:CDS | 25.0% |
!! | AATCTTGCATCCATTTATTT+TGG | + | chr6.2:20495231-20495250 | None:intergenic | 25.0% |
!! | TGTTTATTTCTCCTTTGAAT+TGG | - | chr6.2:20494039-20494058 | MS.gene061990:intron | 25.0% |
!! | TTCTAAAAGAATGAAGGAAA+TGG | - | chr6.2:20494625-20494644 | MS.gene061990:CDS | 25.0% |
!!! | TGTCAACTTTTTCAATTTGT+TGG | - | chr6.2:20495691-20495710 | MS.gene061990:intron | 25.0% |
!!! | TTACTGATAGCTTTAATATG+TGG | - | chr6.2:20494008-20494027 | MS.gene061990:intron | 25.0% |
AATATGATGTGTGCTTGTTT+GGG | - | chr6.2:20495611-20495630 | MS.gene061990:intron | 30.0% | |
AATTCTAACACGTTAAAGGT+AGG | + | chr6.2:20495370-20495389 | None:intergenic | 30.0% | |
AATTGGTATTAATGCAACAC+AGG | - | chr6.2:20496344-20496363 | MS.gene061990:CDS | 30.0% | |
AGAATCCAATGGAAAATATG+TGG | - | chr6.2:20494382-20494401 | MS.gene061990:CDS | 30.0% | |
AGTTATGGGGATAAAAAAGA+AGG | - | chr6.2:20496113-20496132 | MS.gene061990:CDS | 30.0% | |
ATACTGAAGATCATGCATAT+AGG | - | chr6.2:20494159-20494178 | MS.gene061990:CDS | 30.0% | |
ATTCTTATTAGTGCGATAAG+TGG | + | chr6.2:20494825-20494844 | None:intergenic | 30.0% | |
ATTGATTGGAAGAAGACATT+TGG | - | chr6.2:20496562-20496581 | MS.gene061990:CDS | 30.0% | |
CAAAATACATCCTTAAGAGA+TGG | - | chr6.2:20495773-20495792 | MS.gene061990:intron | 30.0% | |
CATTGAAAATGATGTAACCT+TGG | - | chr6.2:20494103-20494122 | MS.gene061990:intron | 30.0% | |
CGAACAAGAGAAAAAATTGT+CGG | + | chr6.2:20495526-20495545 | None:intergenic | 30.0% | |
CTATTCGAGTACTTAATCAT+TGG | - | chr6.2:20495731-20495750 | MS.gene061990:intron | 30.0% | |
GCTAAAAAATTGGTGGAAAT+TGG | - | chr6.2:20495955-20495974 | MS.gene061990:CDS | 30.0% | |
TAAAAGAATGAAGGAAATGG+AGG | - | chr6.2:20494628-20494647 | MS.gene061990:CDS | 30.0% | |
TATAGTTCCAAATGTTGGTA+TGG | - | chr6.2:20494130-20494149 | MS.gene061990:CDS | 30.0% | |
TCAAATTCCATACCAACATT+TGG | + | chr6.2:20494140-20494159 | None:intergenic | 30.0% | |
TCTACCTGTATAATTGGAAT+TGG | + | chr6.2:20496252-20496271 | None:intergenic | 30.0% | |
TTGATTGGAAGAAGACATTT+GGG | - | chr6.2:20496563-20496582 | MS.gene061990:CDS | 30.0% | |
TTTCAACAAGTCACATTGAT+TGG | - | chr6.2:20496548-20496567 | MS.gene061990:CDS | 30.0% | |
! | ACAGAAACTTTTCTTTGTGA+TGG | + | chr6.2:20494470-20494489 | None:intergenic | 30.0% |
! | ACTTTTCTTAAAGCTATGTG+TGG | - | chr6.2:20494956-20494975 | MS.gene061990:CDS | 30.0% |
! | CAATTAAGTGAGAGCTTTAA+TGG | - | chr6.2:20495322-20495341 | MS.gene061990:intron | 30.0% |
! | CAGAATGTATTGTTTTCACA+TGG | - | chr6.2:20496303-20496322 | MS.gene061990:CDS | 30.0% |
! | CATCTCTTAAGGATGTATTT+TGG | + | chr6.2:20495775-20495794 | None:intergenic | 30.0% |
! | CGATTTAAGACAACTAACTT+AGG | + | chr6.2:20495859-20495878 | None:intergenic | 30.0% |
! | CTCTTTTACAGTGAAATTCA+AGG | - | chr6.2:20494076-20494095 | MS.gene061990:intron | 30.0% |
! | TGTAACCACATATTTTCCAT+TGG | + | chr6.2:20494390-20494409 | None:intergenic | 30.0% |
! | TTCAATGCATCTGAAGTTAT+GGG | - | chr6.2:20496099-20496118 | MS.gene061990:CDS | 30.0% |
!! | AGGTTTTATAATATGTACGC+AGG | - | chr6.2:20494179-20494198 | MS.gene061990:CDS | 30.0% |
!! | GTTGTGGATTATGCTTATTT+TGG | - | chr6.2:20494779-20494798 | MS.gene061990:CDS | 30.0% |
!! | GTTTTAGCGTTAGAAAAGAT+TGG | - | chr6.2:20494210-20494229 | MS.gene061990:intron | 30.0% |
!! | TCAATGTGACTTGTTGAAAA+TGG | + | chr6.2:20496547-20496566 | None:intergenic | 30.0% |
!!! | AATTTTTTCTCTTGTTCGTG+GGG | - | chr6.2:20495528-20495547 | MS.gene061990:intron | 30.0% |
!!! | ACAATTTTTTCTCTTGTTCG+TGG | - | chr6.2:20495526-20495545 | MS.gene061990:intron | 30.0% |
!!! | CAATTTTTTCTCTTGTTCGT+GGG | - | chr6.2:20495527-20495546 | MS.gene061990:intron | 30.0% |
!!! | TCTTTTTTGTATGTGTCAGA+AGG | - | chr6.2:20496462-20496481 | MS.gene061990:intron | 30.0% |
ACTTTGATCTTCAGAGTTGA+AGG | + | chr6.2:20495659-20495678 | None:intergenic | 35.0% | |
AGACAGCTGAATCATTTAAG+TGG | - | chr6.2:20494924-20494943 | MS.gene061990:CDS | 35.0% | |
AGATGATATGCGATATAAGG+AGG | - | chr6.2:20495414-20495433 | MS.gene061990:intron | 35.0% | |
AGTTGTCTTAAATCGCTCTA+AGG | - | chr6.2:20495864-20495883 | MS.gene061990:CDS | 35.0% | |
ATAATTGGAATTGGCATGGT+GGG | + | chr6.2:20496243-20496262 | None:intergenic | 35.0% | |
ATATGATGTGTGCTTGTTTG+GGG | - | chr6.2:20495612-20495631 | MS.gene061990:intron | 35.0% | |
ATGGGGATAAAAAAGAAGGA+TGG | - | chr6.2:20496117-20496136 | MS.gene061990:CDS | 35.0% | |
CATAAACGATGATATGACTC+GGG | + | chr6.2:20495049-20495068 | None:intergenic | 35.0% | |
CATATCATCGTTTATGCTTG+TGG | - | chr6.2:20495053-20495072 | MS.gene061990:intron | 35.0% | |
CATGCCAATTCCAATTATAC+AGG | - | chr6.2:20496245-20496264 | MS.gene061990:CDS | 35.0% | |
CATTCTTAGTCCATCTCTTA+AGG | + | chr6.2:20495786-20495805 | None:intergenic | 35.0% | |
CTGTATAATTGGAATTGGCA+TGG | + | chr6.2:20496247-20496266 | None:intergenic | 35.0% | |
GAATATGATGTGTGCTTGTT+TGG | - | chr6.2:20495610-20495629 | MS.gene061990:intron | 35.0% | |
GACGATATAGTTCCAAATGT+TGG | - | chr6.2:20494125-20494144 | MS.gene061990:CDS | 35.0% | |
GAGTTGCAAAGTTGCATTTA+TGG | - | chr6.2:20495142-20495161 | MS.gene061990:intron | 35.0% | |
GATTAAGTACTCGAATAGCA+TGG | + | chr6.2:20495729-20495748 | None:intergenic | 35.0% | |
GCATAAACGATGATATGACT+CGG | + | chr6.2:20495050-20495069 | None:intergenic | 35.0% | |
GCTAGATGATATGCGATATA+AGG | - | chr6.2:20495411-20495430 | MS.gene061990:intron | 35.0% | |
GCTTCATGTAAAGCCTTAAA+CGG | + | chr6.2:20495348-20495367 | None:intergenic | 35.0% | |
GGATGTGTTCTTGACAATAA+AGG | - | chr6.2:20495814-20495833 | MS.gene061990:intron | 35.0% | |
TATAATTGGAATTGGCATGG+TGG | + | chr6.2:20496244-20496263 | None:intergenic | 35.0% | |
TATTCAATGATGGCATCTTC+TGG | + | chr6.2:20495462-20495481 | None:intergenic | 35.0% | |
TCAAGCTACTGAAGTTGAAA+TGG | - | chr6.2:20494493-20494512 | MS.gene061990:CDS | 35.0% | |
TCAATTACCATTAGAATCCG+AGG | + | chr6.2:20493984-20494003 | None:intergenic | 35.0% | |
TGTCAAGATACACTAGCAAT+TGG | - | chr6.2:20496327-20496346 | MS.gene061990:CDS | 35.0% | |
TTTCTCTCTAGACAACTCTT+AGG | + | chr6.2:20496165-20496184 | None:intergenic | 35.0% | |
! | AAAAATGGGCTTCGGTATAT+GGG | - | chr6.2:20495266-20495285 | MS.gene061990:intron | 35.0% |
! | AATTAGTTTCTGACGTATGC+CGG | + | chr6.2:20494528-20494547 | None:intergenic | 35.0% |
! | AGGATGATTTTCTGAATGCT+TGG | - | chr6.2:20495176-20495195 | MS.gene061990:intron | 35.0% |
! | ATTTGGAACTATATCGTCCA+AGG | + | chr6.2:20494123-20494142 | None:intergenic | 35.0% |
! | CAAAAAGGAAAAATGGGCTT+CGG | - | chr6.2:20495258-20495277 | MS.gene061990:intron | 35.0% |
! | CATCGAGAAAGTGTGTTATT+TGG | - | chr6.2:20494881-20494900 | MS.gene061990:CDS | 35.0% |
! | CATTTATGGTTTCGAGTATG+AGG | - | chr6.2:20495156-20495175 | MS.gene061990:intron | 35.0% |
! | CTTCAATGCATCTGAAGTTA+TGG | - | chr6.2:20496098-20496117 | MS.gene061990:CDS | 35.0% |
! | GGATGATTTTCTGAATGCTT+GGG | - | chr6.2:20495177-20495196 | MS.gene061990:intron | 35.0% |
! | TAATTGTGTTGTTGTAGCAC+CGG | + | chr6.2:20495308-20495327 | None:intergenic | 35.0% |
! | TCAATGCATCTGAAGTTATG+GGG | - | chr6.2:20496100-20496119 | MS.gene061990:CDS | 35.0% |
!! | CTCTTAAGGATGTATTTTGG+AGG | + | chr6.2:20495772-20495791 | None:intergenic | 35.0% |
AACAGATCAAGATCCTGCAA+TGG | - | chr6.2:20495000-20495019 | MS.gene061990:CDS | 40.0% | |
AAGAACCTCACAAGATGGAT+GGG | + | chr6.2:20493915-20493934 | None:intergenic | 40.0% | |
AATCCAACAAACGGAGCAAA+TGG | + | chr6.2:20494854-20494873 | None:intergenic | 40.0% | |
AATGGCAAAGGCAATTTCAG+AGG | - | chr6.2:20495018-20495037 | MS.gene061990:CDS | 40.0% | |
ACTCGCAAAGATATCAGAAC+TGG | - | chr6.2:20494332-20494351 | MS.gene061990:intron | 40.0% | |
AGAATGAAGGAAATGGAGGA+AGG | - | chr6.2:20494632-20494651 | MS.gene061990:CDS | 40.0% | |
ATCCATCTTGTGAGGTTCTT+GGG | - | chr6.2:20493915-20493934 | MS.gene061990:CDS | 40.0% | |
ATTACCATTAGAATCCGAGG+TGG | + | chr6.2:20493981-20494000 | None:intergenic | 40.0% | |
CCAATTATACAGGTAGAGCA+AGG | - | chr6.2:20496255-20496274 | MS.gene061990:CDS | 40.0% | |
CCTTGCTCTACCTGTATAAT+TGG | + | chr6.2:20496258-20496277 | None:intergenic | 40.0% | |
GAGTTCATTAGTCGACAAGT+TGG | - | chr6.2:20494551-20494570 | MS.gene061990:CDS | 40.0% | |
TGCGGTAGCAATATCATGTA+AGG | - | chr6.2:20495900-20495919 | MS.gene061990:CDS | 40.0% | |
TTCAGAGATAACGAATGCAG+AGG | - | chr6.2:20496513-20496532 | MS.gene061990:CDS | 40.0% | |
! | AATATGTACGCAGGCTTTGT+TGG | - | chr6.2:20494188-20494207 | MS.gene061990:CDS | 40.0% |
! | AGAGCTTTAATGGCCGTTTA+AGG | - | chr6.2:20495332-20495351 | MS.gene061990:intron | 40.0% |
! | CTTTTGGGCTGATGCTAAAA+TGG | - | chr6.2:20494757-20494776 | MS.gene061990:CDS | 40.0% |
! | GAAAAATGGGCTTCGGTATA+TGG | - | chr6.2:20495265-20495284 | MS.gene061990:intron | 40.0% |
! | TCATTAGTCGACAAGTTGGA+GGG | - | chr6.2:20494555-20494574 | MS.gene061990:CDS | 40.0% |
! | TTCATTAGTCGACAAGTTGG+AGG | - | chr6.2:20494554-20494573 | MS.gene061990:CDS | 40.0% |
AACTGGTTGTTCAGCGCATT+TGG | - | chr6.2:20494349-20494368 | MS.gene061990:CDS | 45.0% | |
AAGAAGGATGGTGTATCCAG+AGG | - | chr6.2:20496129-20496148 | MS.gene061990:CDS | 45.0% | |
ACCATGATCTGCACTCTGTA+TGG | + | chr6.2:20496016-20496035 | None:intergenic | 45.0% | |
CAAGAACCTCACAAGATGGA+TGG | + | chr6.2:20493916-20493935 | None:intergenic | 45.0% | |
CATCCATCTTGTGAGGTTCT+TGG | - | chr6.2:20493914-20493933 | MS.gene061990:CDS | 45.0% | |
CTGAAGTTGAAATGGCGAAC+CGG | - | chr6.2:20494501-20494520 | MS.gene061990:CDS | 45.0% | |
GAAATTGCCTTTGCCATTGC+AGG | + | chr6.2:20495016-20495035 | None:intergenic | 45.0% | |
GATGGTGTATCCAGAGGAAA+AGG | - | chr6.2:20496135-20496154 | MS.gene061990:CDS | 45.0% | |
GGCTGATGCTAAAATGGTTG+TGG | - | chr6.2:20494763-20494782 | MS.gene061990:CDS | 45.0% | |
GGGTTGCAAGTTCATGGTTA+TGG | + | chr6.2:20494427-20494446 | None:intergenic | 45.0% | |
GGTAACTTATGCCTACTCCT+GGG | + | chr6.2:20494449-20494468 | None:intergenic | 45.0% | |
GTAACTTATGCCTACTCCTG+GGG | + | chr6.2:20494448-20494467 | None:intergenic | 45.0% | |
GTCATTGGTCGAGAATCCAA+TGG | - | chr6.2:20494371-20494390 | MS.gene061990:CDS | 45.0% | |
GTTGGAGGGAGAGAAAATGT+TGG | - | chr6.2:20494569-20494588 | MS.gene061990:CDS | 45.0% | |
TAACTTATGCCTACTCCTGG+GGG | + | chr6.2:20494447-20494466 | None:intergenic | 45.0% | |
TAAGGATTTGTGTCGCACTG+CGG | - | chr6.2:20495882-20495901 | MS.gene061990:CDS | 45.0% | |
TCAAGATCCTGCAATGGCAA+AGG | - | chr6.2:20495006-20495025 | MS.gene061990:CDS | 45.0% | |
TCCATACAGAGTGCAGATCA+TGG | - | chr6.2:20496012-20496031 | MS.gene061990:CDS | 45.0% | |
TGGACTAAGAATGCTCGAAG+TGG | - | chr6.2:20495793-20495812 | MS.gene061990:intron | 45.0% | |
TGGTAACTTATGCCTACTCC+TGG | + | chr6.2:20494450-20494469 | None:intergenic | 45.0% | |
TGTTCAGCGCATTTGGTCAT+TGG | - | chr6.2:20494356-20494375 | MS.gene061990:CDS | 45.0% | |
! | CTTAGGTCTACCTTTTCCTC+TGG | + | chr6.2:20496148-20496167 | None:intergenic | 45.0% |
ACCTCACAAGATGGATGGGT+AGG | + | chr6.2:20493911-20493930 | None:intergenic | 50.0% | |
CAATACAGCTTCTGCCACCT+CGG | - | chr6.2:20493964-20493983 | MS.gene061990:CDS | 50.0% | |
CGACCATTTGCTCCGTTTGT+TGG | - | chr6.2:20494848-20494867 | MS.gene061990:CDS | 50.0% | |
CTCCCAAGAACCTCACAAGA+TGG | + | chr6.2:20493920-20493939 | None:intergenic | 50.0% | |
CTCGAATAGCATGGCAGCAA+AGG | + | chr6.2:20495720-20495739 | None:intergenic | 50.0% | |
GAAGGAAATGGAGGAAGGTG+AGG | - | chr6.2:20494637-20494656 | MS.gene061990:CDS | 50.0% | |
TCCTACCCATCCATCTTGTG+AGG | - | chr6.2:20493907-20493926 | MS.gene061990:CDS | 50.0% | |
TCTGCCACCTCGGATTCTAA+TGG | - | chr6.2:20493974-20493993 | MS.gene061990:CDS | 50.0% | |
! | TGTGCTTGTTTGGGGCTATG+AGG | - | chr6.2:20495620-20495639 | MS.gene061990:intron | 50.0% |
AACTTGCAACCCCCAGGAGT+AGG | - | chr6.2:20494435-20494454 | MS.gene061990:CDS | 55.0% | |
ACCATGAACTTGCAACCCCC+AGG | - | chr6.2:20494429-20494448 | MS.gene061990:CDS | 55.0% | |
GTTGAAATGGCGAACCGGTC+CGG | - | chr6.2:20494506-20494525 | MS.gene061990:CDS | 55.0% | |
GTTTCTGACGTATGCCGGAC+CGG | + | chr6.2:20494523-20494542 | None:intergenic | 55.0% | |
TCCTGGGGGTTGCAAGTTCA+TGG | + | chr6.2:20494433-20494452 | None:intergenic | 55.0% | |
!!! | GGGCGACACACTTTTTCAGC+CGG | - | chr6.2:20495286-20495305 | MS.gene061990:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 20493881 | 20496594 | 20493881 | ID=MS.gene061990 |
chr6.2 | mRNA | 20493881 | 20496594 | 20493881 | ID=MS.gene061990.t1;Parent=MS.gene061990 |
chr6.2 | exon | 20496480 | 20496594 | 20496480 | ID=MS.gene061990.t1.exon1;Parent=MS.gene061990.t1 |
chr6.2 | CDS | 20496480 | 20496594 | 20496480 | ID=cds.MS.gene061990.t1;Parent=MS.gene061990.t1 |
chr6.2 | exon | 20495822 | 20496388 | 20495822 | ID=MS.gene061990.t1.exon2;Parent=MS.gene061990.t1 |
chr6.2 | CDS | 20495822 | 20496388 | 20495822 | ID=cds.MS.gene061990.t1;Parent=MS.gene061990.t1 |
chr6.2 | exon | 20494335 | 20495059 | 20494335 | ID=MS.gene061990.t1.exon3;Parent=MS.gene061990.t1 |
chr6.2 | CDS | 20494335 | 20495059 | 20494335 | ID=cds.MS.gene061990.t1;Parent=MS.gene061990.t1 |
chr6.2 | exon | 20494110 | 20494208 | 20494110 | ID=MS.gene061990.t1.exon4;Parent=MS.gene061990.t1 |
chr6.2 | CDS | 20494110 | 20494208 | 20494110 | ID=cds.MS.gene061990.t1;Parent=MS.gene061990.t1 |
chr6.2 | exon | 20493881 | 20493994 | 20493881 | ID=MS.gene061990.t1.exon5;Parent=MS.gene061990.t1 |
chr6.2 | CDS | 20493881 | 20493994 | 20493881 | ID=cds.MS.gene061990.t1;Parent=MS.gene061990.t1 |
Gene Sequence |
Protein sequence |