Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062233.t1 | XP_024637002.1 | 95.6 | 367 | 16 | 0 | 1 | 367 | 29 | 395 | 1.40E-197 | 698.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062233.t1 | Q949P3 | 74.2 | 364 | 93 | 1 | 4 | 367 | 3 | 365 | 7.4e-155 | 548.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062233.t1 | A0A072VMJ0 | 95.6 | 367 | 16 | 0 | 1 | 367 | 1 | 367 | 1.0e-197 | 698.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049232 | MS.gene062233 | 0.809544 | 1.80E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene062233 | 0.803989 | 2.68E-49 | -1.69E-46 |
| MS.gene056166 | MS.gene062233 | 0.816474 | 5.43E-52 | -1.69E-46 |
| MS.gene060482 | MS.gene062233 | 0.808417 | 3.13E-50 | -1.69E-46 |
| MS.gene06097 | MS.gene062233 | 0.805152 | 1.53E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062233.t1 | MTR_1g076720 | 95.640 | 367 | 16 | 0 | 1 | 367 | 1 | 367 | 0.0 | 716 |
| MS.gene062233.t1 | MTR_1g076730 | 89.402 | 368 | 38 | 1 | 1 | 367 | 154 | 521 | 0.0 | 648 |
| MS.gene062233.t1 | MTR_6g060550 | 77.747 | 364 | 80 | 1 | 4 | 367 | 3 | 365 | 0.0 | 592 |
| MS.gene062233.t1 | MTR_6g060550 | 76.803 | 319 | 73 | 1 | 4 | 322 | 44 | 361 | 0.0 | 509 |
| MS.gene062233.t1 | MTR_6g060550 | 76.803 | 319 | 73 | 1 | 4 | 322 | 3 | 320 | 0.0 | 506 |
| MS.gene062233.t1 | MTR_3g077740 | 36.528 | 386 | 200 | 10 | 11 | 365 | 519 | 890 | 1.28e-64 | 221 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062233.t1 | AT4G35360 | 74.451 | 364 | 92 | 1 | 4 | 367 | 3 | 365 | 0.0 | 564 |
| MS.gene062233.t1 | AT4G35360 | 74.451 | 364 | 92 | 1 | 4 | 367 | 3 | 365 | 0.0 | 564 |
| MS.gene062233.t1 | AT2G17340 | 74.176 | 364 | 93 | 1 | 4 | 367 | 3 | 365 | 0.0 | 561 |
| MS.gene062233.t1 | AT2G17320 | 71.389 | 360 | 102 | 1 | 8 | 367 | 1 | 359 | 0.0 | 531 |
| MS.gene062233.t1 | AT2G17320 | 71.513 | 337 | 95 | 1 | 8 | 344 | 1 | 336 | 1.73e-176 | 494 |
| MS.gene062233.t1 | AT4G35360 | 79.231 | 260 | 54 | 0 | 108 | 367 | 9 | 268 | 2.31e-153 | 432 |
| MS.gene062233.t1 | AT4G32180 | 35.230 | 369 | 197 | 9 | 36 | 364 | 530 | 896 | 2.33e-60 | 209 |
| MS.gene062233.t1 | AT4G32180 | 34.661 | 251 | 145 | 6 | 36 | 269 | 530 | 778 | 2.26e-40 | 152 |
| MS.gene062233.t1 | AT4G32180 | 34.661 | 251 | 145 | 6 | 36 | 269 | 530 | 778 | 2.26e-40 | 152 |
Find 70 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTGAATGCAGGTTATTT+TGG | 0.230447 | 1.1:+57570577 | MS.gene062233:intron |
| GACGAACAACATTGTCAAAT+AGG | 0.263552 | 1.1:-57569435 | None:intergenic |
| TATGACACTTGCCTTCTTCC+AGG | 0.325441 | 1.1:-57569988 | None:intergenic |
| CGACTTGAGAATTTAGTTAG+AGG | 0.325458 | 1.1:+57569487 | MS.gene062233:CDS |
| AATGGTGCATGCTGAGTATT+TGG | 0.337934 | 1.1:-57568318 | None:intergenic |
| TCAAGAAATTCTGCAACTTC+AGG | 0.358646 | 1.1:-57571720 | None:intergenic |
| ATCATATTTGTTGATAACTC+TGG | 0.375977 | 1.1:+57570094 | MS.gene062233:CDS |
| TGAGGAAGTCCTAAAAGAAC+TGG | 0.384737 | 1.1:+57569062 | MS.gene062233:CDS |
| TAAAATACTTGAAGATTTGA+AGG | 0.396414 | 1.1:+57568854 | MS.gene062233:CDS |
| TCGGCTTTATTTGCAGCATC+AGG | 0.396559 | 1.1:-57568558 | None:intergenic |
| GCTTCTTCGTCGTGGGAGTC+AGG | 0.400566 | 1.1:+57570156 | MS.gene062233:CDS |
| AGAGGATTTCCATGACTTGC+AGG | 0.410355 | 1.1:-57568882 | None:intergenic |
| GGTGAGATTCCCTTTGTTGA+TGG | 0.411077 | 1.1:+57568280 | MS.gene062233:CDS |
| ACGAACAACATTGTCAAATA+GGG | 0.414294 | 1.1:-57569434 | None:intergenic |
| GCAGGGAACGTATTTGATCT+TGG | 0.416285 | 1.1:+57569517 | MS.gene062233:CDS |
| CCTTTGTTGATGGATGATAC+TGG | 0.416576 | 1.1:+57568290 | MS.gene062233:CDS |
| TCATATTTGTTGATAACTCT+GGG | 0.425797 | 1.1:+57570095 | MS.gene062233:CDS |
| AATCTATTAATTACTAACTC+TGG | 0.443425 | 1.1:+57570781 | MS.gene062233:CDS |
| GGATGAAGAAGGACGTCTCT+TGG | 0.448800 | 1.1:+57570744 | MS.gene062233:CDS |
| CAAGGGAGCTTCTTCGTCGT+GGG | 0.467776 | 1.1:+57570149 | MS.gene062233:CDS |
| TAAGTCACATCATTGATAGA+AGG | 0.471591 | 1.1:-57570614 | None:intergenic |
| CGAAGAAGCTCCCTTGCAAA+TGG | 0.476753 | 1.1:-57570142 | None:intergenic |
| GATGAAGAAGGACGTCTCTT+GGG | 0.482977 | 1.1:+57570745 | MS.gene062233:CDS |
| CAAGATCTACATCACTGGTA+AGG | 0.485155 | 1.1:-57570978 | None:intergenic |
| ACTCAGCATGCACCATTCCT+TGG | 0.486421 | 1.1:+57568324 | MS.gene062233:CDS |
| CGAGAGATCTTACTTGTAGG+AGG | 0.489362 | 1.1:-57568423 | None:intergenic |
| TGAGATGGAGCAAGAAGTCC+TGG | 0.495056 | 1.1:+57569970 | MS.gene062233:CDS |
| AATGATGCAATTGAAGATGA+AGG | 0.499048 | 1.1:+57569460 | MS.gene062233:CDS |
| GCTAATTGAAATTGTATCAA+AGG | 0.516715 | 1.1:+57570643 | MS.gene062233:CDS |
| CAGCATGCACCATTCCTTGG+AGG | 0.526434 | 1.1:+57568327 | MS.gene062233:CDS |
| GCAAGGGAGCTTCTTCGTCG+TGG | 0.533957 | 1.1:+57570148 | MS.gene062233:CDS |
| GCAGAAGCTTTCTCTAGAGA+TGG | 0.534043 | 1.1:+57569873 | MS.gene062233:CDS |
| TTGCAGAATTTCTTGAGTCA+CGG | 0.536535 | 1.1:+57571727 | MS.gene062233:CDS |
| TAATCCATGGTCGAGGGAGA+AGG | 0.539234 | 1.1:-57569923 | None:intergenic |
| AAGGAAGATCCTGCAAGTCA+TGG | 0.547294 | 1.1:+57568873 | MS.gene062233:CDS |
| GAGAGATCTTACTTGTAGGA+GGG | 0.552454 | 1.1:-57568422 | None:intergenic |
| GAGCAAGAAGTCCTGGAAGA+AGG | 0.553466 | 1.1:+57569977 | MS.gene062233:CDS |
| ATTTGATCTTGGTTCTCCCC+AGG | 0.554481 | 1.1:+57569528 | MS.gene062233:CDS |
| CAGTATCATCCATCAACAAA+GGG | 0.555127 | 1.1:-57568289 | None:intergenic |
| TCATCAATAATCCATGGTCG+AGG | 0.555707 | 1.1:-57569930 | None:intergenic |
| TTCCAGTTAAAGGATGAAGA+AGG | 0.557052 | 1.1:+57570733 | MS.gene062233:intron |
| ACCATGGATTATTGATGACC+TGG | 0.565200 | 1.1:+57569935 | MS.gene062233:CDS |
| AGAGATCTTACTTGTAGGAG+GGG | 0.566725 | 1.1:-57568421 | None:intergenic |
| GGCAAGTAGTAGATCACAGT+TGG | 0.571985 | 1.1:+57568259 | MS.gene062233:CDS |
| AAGATCTACATCACTGGTAA+GGG | 0.573418 | 1.1:-57570977 | None:intergenic |
| AATGACAAGATCTACATCAC+TGG | 0.576486 | 1.1:-57570983 | None:intergenic |
| AAAACCTTCTCCCTCGACCA+TGG | 0.580298 | 1.1:+57569919 | MS.gene062233:CDS |
| AGAAGGGAACCTCCAAGGAA+TGG | 0.582699 | 1.1:-57568336 | None:intergenic |
| AACATTGTCAAATAGGGTGA+TGG | 0.583149 | 1.1:-57569428 | None:intergenic |
| CCAGTATCATCCATCAACAA+AGG | 0.588590 | 1.1:-57568290 | None:intergenic |
| GAGGAAGTCCTAAAAGAACT+GGG | 0.591141 | 1.1:+57569063 | MS.gene062233:CDS |
| GCAGGTTATTGATCTTACAA+AGG | 0.595387 | 1.1:+57570936 | MS.gene062233:intron |
| TGGACACTTTGAAAATGAGA+TGG | 0.600640 | 1.1:+57569955 | MS.gene062233:CDS |
| TCCAGGTCATCAATAATCCA+TGG | 0.607875 | 1.1:-57569936 | None:intergenic |
| ATTAATCCACGATAACTCAG+TGG | 0.611941 | 1.1:-57568381 | None:intergenic |
| ACGACACGTGGATCATCAGA+AGG | 0.612228 | 1.1:-57568353 | None:intergenic |
| TCATCAGAAGGGAACCTCCA+AGG | 0.615232 | 1.1:-57568341 | None:intergenic |
| TATTTCTTATGACAGGGTCG+CGG | 0.620204 | 1.1:+57571545 | MS.gene062233:intron |
| GAACATACAAGGATATCAAG+AGG | 0.620851 | 1.1:-57568900 | None:intergenic |
| TCACTCCCACTGAGTTATCG+TGG | 0.623928 | 1.1:+57568375 | MS.gene062233:CDS |
| CATCAATAATCCATGGTCGA+GGG | 0.634284 | 1.1:-57569929 | None:intergenic |
| AGATATCTTCAAGAAAGTCA+AGG | 0.640034 | 1.1:+57569092 | MS.gene062233:CDS |
| TCAGTGGGAGTGACGACACG+TGG | 0.640273 | 1.1:-57568365 | None:intergenic |
| TTAATCCACGATAACTCAGT+GGG | 0.640807 | 1.1:-57568380 | None:intergenic |
| ACAGGATGAAGAGAATGCAA+AGG | 0.651422 | 1.1:+57569405 | MS.gene062233:intron |
| CGACACGTGGATCATCAGAA+GGG | 0.686387 | 1.1:-57568352 | None:intergenic |
| CATATTTGTTGATAACTCTG+GGG | 0.688572 | 1.1:+57570096 | MS.gene062233:CDS |
| TGATTCTATGAAGATTGCAA+TGG | 0.691158 | 1.1:+57571601 | MS.gene062233:CDS |
| AGGAAGTCCTAAAAGAACTG+GGG | 0.716599 | 1.1:+57569064 | MS.gene062233:CDS |
| TGGATTAATCTTCTACACAG+TGG | 0.743690 | 1.1:+57568395 | MS.gene062233:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAATTTCAACAAATTTT+TGG | + | chr1.1:57570673-57570692 | MS.gene062233:intron | 10.0% |
| !!! | ATTAATTTTTAGCTTTTATT+TGG | + | chr1.1:57568502-57568521 | MS.gene062233:intron | 10.0% |
| !!! | TTGTTAAATTTTTTAAACTT+TGG | - | chr1.1:57569277-57569296 | None:intergenic | 10.0% |
| !!! | AACATTTTGTTTGTTATATT+AGG | + | chr1.1:57570834-57570853 | MS.gene062233:intron | 15.0% |
| !!! | AGAGTTTTTTTTTTTCTTTT+TGG | + | chr1.1:57568643-57568662 | MS.gene062233:intron | 15.0% |
| !!! | ATAATCAATTTCTTTTTTCA+TGG | + | chr1.1:57570065-57570084 | MS.gene062233:intron | 15.0% |
| !!! | ATTTTCAAATTTTTAAGCAA+GGG | - | chr1.1:57569606-57569625 | None:intergenic | 15.0% |
| !!! | TATTTTCAAATTTTTAAGCA+AGG | - | chr1.1:57569607-57569626 | None:intergenic | 15.0% |
| !!! | TCTTATATTTTTTCTTTTAC+AGG | + | chr1.1:57571689-57571708 | MS.gene062233:intron | 15.0% |
| !!! | TTTTAAAAAACTTTAAAAGC+TGG | - | chr1.1:57570548-57570567 | None:intergenic | 15.0% |
| !! | AACAACTATTTGAATTACTT+AGG | - | chr1.1:57568784-57568803 | None:intergenic | 20.0% |
| !! | AATAAATGTGTTGAAATACA+TGG | + | chr1.1:57570416-57570435 | MS.gene062233:intron | 20.0% |
| !! | AATACTATTAAGAGAAAATG+TGG | + | chr1.1:57569157-57569176 | MS.gene062233:intron | 20.0% |
| !! | AATCTATTAATTACTAACTC+TGG | + | chr1.1:57570781-57570800 | MS.gene062233:CDS | 20.0% |
| !! | AATGTCAATAAATATGTAGA+TGG | - | chr1.1:57568707-57568726 | None:intergenic | 20.0% |
| !! | ACATATTTATTGACATTGTT+CGG | + | chr1.1:57568710-57568729 | MS.gene062233:intron | 20.0% |
| !! | AGATGAATTATTACAAATCT+TGG | - | chr1.1:57569371-57569390 | None:intergenic | 20.0% |
| !! | ATAAAATCAACCAAACTATA+TGG | + | chr1.1:57569670-57569689 | MS.gene062233:intron | 20.0% |
| !! | ATATAAAAAATCAAACTACC+TGG | - | chr1.1:57569549-57569568 | None:intergenic | 20.0% |
| !! | TAAAAGAAACTAAAAAGGAA+CGG | + | chr1.1:57571381-57571400 | MS.gene062233:intron | 20.0% |
| !! | TAAAATACTTGAAGATTTGA+AGG | + | chr1.1:57568854-57568873 | MS.gene062233:CDS | 20.0% |
| !! | TATAAAAAATCAAACTACCT+GGG | - | chr1.1:57569548-57569567 | None:intergenic | 20.0% |
| !!! | AGGCAAATAAATTCATTTTA+AGG | - | chr1.1:57569745-57569764 | None:intergenic | 20.0% |
| !!! | TGCAATATTGAATCTTATTT+TGG | + | chr1.1:57568807-57568826 | MS.gene062233:intron | 20.0% |
| !!! | TTCCTTTTTAGTTTCTTTTA+AGG | - | chr1.1:57571381-57571400 | None:intergenic | 20.0% |
| !!! | TTTGTTATATTAGGAAATTC+TGG | + | chr1.1:57570843-57570862 | MS.gene062233:intron | 20.0% |
| ! | AAAAAAGGAATGGAGAAAAT+AGG | - | chr1.1:57571083-57571102 | None:intergenic | 25.0% |
| ! | AAAAGAAACTAAAAAGGAAC+GGG | + | chr1.1:57571382-57571401 | MS.gene062233:intron | 25.0% |
| ! | AAAATGTGGAAGAATATATC+TGG | + | chr1.1:57569171-57569190 | MS.gene062233:intron | 25.0% |
| ! | AAACCATAGTTAATATTGCA+TGG | - | chr1.1:57571225-57571244 | None:intergenic | 25.0% |
| ! | AACATGTAAAACATGTCATA+TGG | - | chr1.1:57570317-57570336 | None:intergenic | 25.0% |
| ! | AAGAATATATCTGGTTATTG+GGG | + | chr1.1:57569180-57569199 | MS.gene062233:intron | 25.0% |
| ! | AATCAACTATCCATATAGTT+TGG | - | chr1.1:57569683-57569702 | None:intergenic | 25.0% |
| ! | ACAGATAATAAAGAGAAATG+AGG | - | chr1.1:57569012-57569031 | None:intergenic | 25.0% |
| ! | AGCCTTAAAAGAAACTAAAA+AGG | + | chr1.1:57571376-57571395 | MS.gene062233:intron | 25.0% |
| ! | ATAAAAAATCAAACTACCTG+GGG | - | chr1.1:57569547-57569566 | None:intergenic | 25.0% |
| ! | ATAAACAATTGTCTTCTAGT+AGG | - | chr1.1:57569765-57569784 | None:intergenic | 25.0% |
| ! | ATATATAATCCTCCAAACAT+TGG | - | chr1.1:57569800-57569819 | None:intergenic | 25.0% |
| ! | ATGTACAAATAAGAGTTCAA+TGG | - | chr1.1:57570515-57570534 | None:intergenic | 25.0% |
| ! | CTGATGTTCATAAAAACATT+AGG | - | chr1.1:57568740-57568759 | None:intergenic | 25.0% |
| ! | GAAACTACATGATTTATTGA+TGG | - | chr1.1:57569341-57569360 | None:intergenic | 25.0% |
| ! | GAAGAATATATCTGGTTATT+GGG | + | chr1.1:57569179-57569198 | MS.gene062233:intron | 25.0% |
| ! | GATTGTGTTGAATAACAAAA+AGG | - | chr1.1:57570396-57570415 | None:intergenic | 25.0% |
| ! | GCTAATTGAAATTGTATCAA+AGG | + | chr1.1:57570643-57570662 | MS.gene062233:CDS | 25.0% |
| ! | TAACCTTTGAGCAAAAATTT+CGG | - | chr1.1:57568580-57568599 | None:intergenic | 25.0% |
| ! | TAGCATTTATCAAATAGAAC+AGG | - | chr1.1:57569138-57569157 | None:intergenic | 25.0% |
| ! | TATAAAAGTGACAGTTGAAA+AGG | - | chr1.1:57571158-57571177 | None:intergenic | 25.0% |
| ! | TATCCATGCAATATTAACTA+TGG | + | chr1.1:57571219-57571238 | MS.gene062233:intron | 25.0% |
| ! | TTGGTTCATTTCTTTCAAAA+AGG | + | chr1.1:57568826-57568845 | MS.gene062233:intron | 25.0% |
| !! | AAAGAGCATATAACTTTGTT+TGG | - | chr1.1:57570247-57570266 | None:intergenic | 25.0% |
| !! | CATTCTTTTCATGATTTTGT+TGG | + | chr1.1:57569251-57569270 | MS.gene062233:intron | 25.0% |
| !! | GGAATTCATTTTGCTTTATA+AGG | + | chr1.1:57570437-57570456 | MS.gene062233:intron | 25.0% |
| !! | GTTTCTGAAAAAAATCTTAC+AGG | - | chr1.1:57570817-57570836 | None:intergenic | 25.0% |
| !! | TCTGGTTTCTTTATAGTTTA+TGG | + | chr1.1:57570861-57570880 | MS.gene062233:intron | 25.0% |
| !! | TTTTCAATGTCATCAAGATA+GGG | + | chr1.1:57569303-57569322 | MS.gene062233:intron | 25.0% |
| !!! | ACATTGTATGCTTTTTCTAT+TGG | + | chr1.1:57571036-57571055 | MS.gene062233:intron | 25.0% |
| !!! | ATCATATTTGTTGATAACTC+TGG | + | chr1.1:57570094-57570113 | MS.gene062233:CDS | 25.0% |
| !!! | CACTTTTTGACAAGAATTAT+GGG | - | chr1.1:57571496-57571515 | None:intergenic | 25.0% |
| !!! | CATTGTATGCTTTTTCTATT+GGG | + | chr1.1:57571037-57571056 | MS.gene062233:intron | 25.0% |
| !!! | CTAATGTTTTTATGAACATC+AGG | + | chr1.1:57568738-57568757 | MS.gene062233:intron | 25.0% |
| !!! | TAGATCTTGTCATTTTAGAA+GGG | + | chr1.1:57570992-57571011 | MS.gene062233:CDS | 25.0% |
| !!! | TCATATTTGTTGATAACTCT+GGG | + | chr1.1:57570095-57570114 | MS.gene062233:CDS | 25.0% |
| !!! | TTTTAGCTTTTATTTGGTAC+AGG | + | chr1.1:57568508-57568527 | MS.gene062233:intron | 25.0% |
| AAAAAGCCACATAATTTACG+TGG | - | chr1.1:57570285-57570304 | None:intergenic | 30.0% | |
| AAAGAAACTAAAAAGGAACG+GGG | + | chr1.1:57571383-57571402 | MS.gene062233:intron | 30.0% | |
| AAATGAGGAAAAACACAGAA+GGG | - | chr1.1:57568997-57569016 | None:intergenic | 30.0% | |
| AATGATGCAATTGAAGATGA+AGG | + | chr1.1:57569460-57569479 | MS.gene062233:CDS | 30.0% | |
| ACGAACAACATTGTCAAATA+GGG | - | chr1.1:57569437-57569456 | None:intergenic | 30.0% | |
| ACTGACATATTTCTTATGAC+AGG | + | chr1.1:57571538-57571557 | MS.gene062233:intron | 30.0% | |
| AGATATCTTCAAGAAAGTCA+AGG | + | chr1.1:57569092-57569111 | MS.gene062233:CDS | 30.0% | |
| ATGATGATTACATTCTTGCA+TGG | + | chr1.1:57570910-57570929 | MS.gene062233:intron | 30.0% | |
| ATTCTCACAAACTAAGAATG+AGG | + | chr1.1:57569641-57569660 | MS.gene062233:intron | 30.0% | |
| CCATAATTCTTGTCAAAAAG+TGG | + | chr1.1:57571494-57571513 | MS.gene062233:intron | 30.0% | |
| CTGACATATTTCTTATGACA+GGG | + | chr1.1:57571539-57571558 | MS.gene062233:intron | 30.0% | |
| GGAAGAATATATCTGGTTAT+TGG | + | chr1.1:57569178-57569197 | MS.gene062233:intron | 30.0% | |
| TAACTATTTACTGTTGAGAG+AGG | + | chr1.1:57571260-57571279 | MS.gene062233:intron | 30.0% | |
| TAAGTCACATCATTGATAGA+AGG | - | chr1.1:57570617-57570636 | None:intergenic | 30.0% | |
| TACAATCATATGCCAATGTT+TGG | + | chr1.1:57569785-57569804 | MS.gene062233:intron | 30.0% | |
| TGATTCTATGAAGATTGCAA+TGG | + | chr1.1:57571601-57571620 | MS.gene062233:CDS | 30.0% | |
| TGCAAGCTTCAAAAAATTGA+GGG | - | chr1.1:57569856-57569875 | None:intergenic | 30.0% | |
| TTGCTTTATAAGGAACTTAG+AGG | + | chr1.1:57570447-57570466 | MS.gene062233:intron | 30.0% | |
| TTTCAATGTCATCAAGATAG+GGG | + | chr1.1:57569304-57569323 | MS.gene062233:intron | 30.0% | |
| ! | CTTTTCAATGTCATCAAGAT+AGG | + | chr1.1:57569302-57569321 | MS.gene062233:intron | 30.0% |
| ! | GAAATTTTTGCTCAAAGGTT+AGG | + | chr1.1:57568579-57568598 | MS.gene062233:intron | 30.0% |
| ! | TAATTCTATTGAAAGCACGA+AGG | + | chr1.1:57571326-57571345 | MS.gene062233:intron | 30.0% |
| ! | TAGTTAGAGGAATTTTTGCA+GGG | + | chr1.1:57569500-57569519 | MS.gene062233:CDS | 30.0% |
| ! | TCTCATTTGCATTTAAGTTC+AGG | - | chr1.1:57568930-57568949 | None:intergenic | 30.0% |
| ! | TTAGTTAGAGGAATTTTTGC+AGG | + | chr1.1:57569499-57569518 | MS.gene062233:CDS | 30.0% |
| ! | TTCTGATGTATTTTGTCCAA+GGG | + | chr1.1:57570035-57570054 | MS.gene062233:intron | 30.0% |
| ! | TTTTGTTCACTTCTGTGTTA+CGG | + | chr1.1:57569573-57569592 | MS.gene062233:intron | 30.0% |
| !! | CATATTTGTTGATAACTCTG+GGG | + | chr1.1:57570096-57570115 | MS.gene062233:CDS | 30.0% |
| !! | TTTTGAATTGCTTTGAATGC+AGG | + | chr1.1:57570568-57570587 | MS.gene062233:intron | 30.0% |
| !!! | CCACTTTTTGACAAGAATTA+TGG | - | chr1.1:57571497-57571516 | None:intergenic | 30.0% |
| !!! | GTAGATCTTGTCATTTTAGA+AGG | + | chr1.1:57570991-57571010 | MS.gene062233:CDS | 30.0% |
| !!! | TAGAGATGGAATGTCATTTT+CGG | + | chr1.1:57569887-57569906 | MS.gene062233:CDS | 30.0% |
| !!! | TCAATTTCTTTTTTCATGGC+AGG | + | chr1.1:57570069-57570088 | MS.gene062233:intron | 30.0% |
| !!! | TCTCTTTCAATCGTGTTTTT+TGG | + | chr1.1:57570199-57570218 | MS.gene062233:intron | 30.0% |
| AAAATTGAGCATGTCGTTCA+AGG | + | chr1.1:57568450-57568469 | MS.gene062233:intron | 35.0% | |
| AACATTGTCAAATAGGGTGA+TGG | - | chr1.1:57569431-57569450 | None:intergenic | 35.0% | |
| AAGAAACTAAAAAGGAACGG+GGG | + | chr1.1:57571384-57571403 | MS.gene062233:intron | 35.0% | |
| AAGATCTACATCACTGGTAA+GGG | - | chr1.1:57570980-57570999 | None:intergenic | 35.0% | |
| AATCATATGCCAATGTTTGG+AGG | + | chr1.1:57569788-57569807 | MS.gene062233:intron | 35.0% | |
| AATGACAAGATCTACATCAC+TGG | - | chr1.1:57570986-57571005 | None:intergenic | 35.0% | |
| AATGAGGAAAAACACAGAAG+GGG | - | chr1.1:57568996-57569015 | None:intergenic | 35.0% | |
| ACAGAGTTAGGAAAGAACTT+CGG | - | chr1.1:57570704-57570723 | None:intergenic | 35.0% | |
| AGTCAATGATTTGACAGTAC+AGG | - | chr1.1:57570887-57570906 | None:intergenic | 35.0% | |
| ATCTGTGATTTGAATGCAAC+AGG | + | chr1.1:57569387-57569406 | MS.gene062233:intron | 35.0% | |
| ATTAATCCACGATAACTCAG+TGG | - | chr1.1:57568384-57568403 | None:intergenic | 35.0% | |
| ATTATGGGCCTCATTATTAG+AGG | - | chr1.1:57571481-57571500 | None:intergenic | 35.0% | |
| CAGTATCATCCATCAACAAA+GGG | - | chr1.1:57568292-57568311 | None:intergenic | 35.0% | |
| CAGTTCTTCCTCTAATAATG+AGG | + | chr1.1:57571470-57571489 | MS.gene062233:intron | 35.0% | |
| CGACTTGAGAATTTAGTTAG+AGG | + | chr1.1:57569487-57569506 | MS.gene062233:CDS | 35.0% | |
| CTGCAAGCTTCAAAAAATTG+AGG | - | chr1.1:57569857-57569876 | None:intergenic | 35.0% | |
| GAAATGAGGAAAAACACAGA+AGG | - | chr1.1:57568998-57569017 | None:intergenic | 35.0% | |
| GAACATACAAGGATATCAAG+AGG | - | chr1.1:57568903-57568922 | None:intergenic | 35.0% | |
| GACGAACAACATTGTCAAAT+AGG | - | chr1.1:57569438-57569457 | None:intergenic | 35.0% | |
| GCAGGTTATTGATCTTACAA+AGG | + | chr1.1:57570936-57570955 | MS.gene062233:intron | 35.0% | |
| GTTCAGGTAAAGAACATACA+AGG | - | chr1.1:57568914-57568933 | None:intergenic | 35.0% | |
| TCAAGAAATTCTGCAACTTC+AGG | - | chr1.1:57571723-57571742 | None:intergenic | 35.0% | |
| TGGATTAATCTTCTACACAG+TGG | + | chr1.1:57568395-57568414 | MS.gene062233:CDS | 35.0% | |
| TTAATCCACGATAACTCAGT+GGG | - | chr1.1:57568383-57568402 | None:intergenic | 35.0% | |
| TTCAATGTCATCAAGATAGG+GGG | + | chr1.1:57569305-57569324 | MS.gene062233:intron | 35.0% | |
| TTCCAGTTAAAGGATGAAGA+AGG | + | chr1.1:57570733-57570752 | MS.gene062233:intron | 35.0% | |
| TTGCAGAATTTCTTGAGTCA+CGG | + | chr1.1:57571727-57571746 | MS.gene062233:CDS | 35.0% | |
| TTTCGAGAGATCTTACTTGT+AGG | - | chr1.1:57568429-57568448 | None:intergenic | 35.0% | |
| TTTGTAGAAAGGGGGAAAAA+AGG | - | chr1.1:57571098-57571117 | None:intergenic | 35.0% | |
| ! | AAGCCGAAATTTTTGCTCAA+AGG | + | chr1.1:57568574-57568593 | MS.gene062233:CDS | 35.0% |
| ! | AGTTGATTCTGTACAACCAT+AGG | + | chr1.1:57569695-57569714 | MS.gene062233:intron | 35.0% |
| ! | ATTGAAAGCACGAAGGTTAT+TGG | + | chr1.1:57571333-57571352 | MS.gene062233:intron | 35.0% |
| ! | ATTTTTGCTCAAAGGTTAGG+CGG | + | chr1.1:57568582-57568601 | MS.gene062233:intron | 35.0% |
| ! | CTTCTGATGTATTTTGTCCA+AGG | + | chr1.1:57570034-57570053 | MS.gene062233:intron | 35.0% |
| ! | GCAATTTTGTGTTAAGCAGT+GGG | + | chr1.1:57570345-57570364 | MS.gene062233:intron | 35.0% |
| ! | TGCAATTTTGTGTTAAGCAG+TGG | + | chr1.1:57570344-57570363 | MS.gene062233:intron | 35.0% |
| ! | TGGACACTTTGAAAATGAGA+TGG | + | chr1.1:57569955-57569974 | MS.gene062233:CDS | 35.0% |
| !! | AGGTATTTTGCCATTTGCAA+GGG | + | chr1.1:57570132-57570151 | MS.gene062233:CDS | 35.0% |
| !! | ATCTCATTTTCAAAGTGTCC+AGG | - | chr1.1:57569956-57569975 | None:intergenic | 35.0% |
| !! | GCTTTGAATGCAGGTTATTT+TGG | + | chr1.1:57570577-57570596 | MS.gene062233:intron | 35.0% |
| !! | TAGGTATTTTGCCATTTGCA+AGG | + | chr1.1:57570131-57570150 | MS.gene062233:CDS | 35.0% |
| !! | TCAAGTTGGTTTCCAGTTAA+AGG | + | chr1.1:57570723-57570742 | MS.gene062233:intron | 35.0% |
| !! | TCTGGGGCAGATATTATTTT+AGG | + | chr1.1:57570112-57570131 | MS.gene062233:CDS | 35.0% |
| !!! | TCTTGTCATTTTAGAAGGGA+TGG | + | chr1.1:57570996-57571015 | MS.gene062233:CDS | 35.0% |
| !!! | TTCAATCGTGTTTTTTGGTC+TGG | + | chr1.1:57570204-57570223 | MS.gene062233:intron | 35.0% |
| AACATCCTGCAGCAAGAATA+TGG | + | chr1.1:57569215-57569234 | MS.gene062233:intron | 40.0% | |
| AATGGTGCATGCTGAGTATT+TGG | - | chr1.1:57568321-57568340 | None:intergenic | 40.0% | |
| ACAGGATGAAGAGAATGCAA+AGG | + | chr1.1:57569405-57569424 | MS.gene062233:intron | 40.0% | |
| ACATCCTGCAGCAAGAATAT+GGG | + | chr1.1:57569216-57569235 | MS.gene062233:intron | 40.0% | |
| ACTCTCAAAGTGAACGAAAC+AGG | - | chr1.1:57568628-57568647 | None:intergenic | 40.0% | |
| ACTGTTGAGAGAGGAATATG+CGG | + | chr1.1:57571269-57571288 | MS.gene062233:intron | 40.0% | |
| AGAAAGGGGGAAAAAAGGAA+TGG | - | chr1.1:57571093-57571112 | None:intergenic | 40.0% | |
| AGAGATCTTACTTGTAGGAG+GGG | - | chr1.1:57568424-57568443 | None:intergenic | 40.0% | |
| AGGAAGTCCTAAAAGAACTG+GGG | + | chr1.1:57569064-57569083 | MS.gene062233:CDS | 40.0% | |
| ATTCTTGTCAAAAAGTGGCG+TGG | + | chr1.1:57571499-57571518 | MS.gene062233:intron | 40.0% | |
| ATTGATTATGACACCACCCT+TGG | - | chr1.1:57570054-57570073 | None:intergenic | 40.0% | |
| CAAGATCTACATCACTGGTA+AGG | - | chr1.1:57570981-57571000 | None:intergenic | 40.0% | |
| CATCAATAATCCATGGTCGA+GGG | - | chr1.1:57569932-57569951 | None:intergenic | 40.0% | |
| CCAGTATCATCCATCAACAA+AGG | - | chr1.1:57568293-57568312 | None:intergenic | 40.0% | |
| CCATAGAAATTGTCAGCCTA+TGG | - | chr1.1:57569714-57569733 | None:intergenic | 40.0% | |
| CCATAGGCTGACAATTTCTA+TGG | + | chr1.1:57569711-57569730 | MS.gene062233:intron | 40.0% | |
| CTTTCCTAACTCTGTCAAGT+TGG | + | chr1.1:57570709-57570728 | MS.gene062233:intron | 40.0% | |
| GAAACCAACTTGACAGAGTT+AGG | - | chr1.1:57570716-57570735 | None:intergenic | 40.0% | |
| GACAGTTGAAAAGGAACGAA+AGG | - | chr1.1:57571149-57571168 | None:intergenic | 40.0% | |
| GAGAGATCTTACTTGTAGGA+GGG | - | chr1.1:57568425-57568444 | None:intergenic | 40.0% | |
| GAGGAAGTCCTAAAAGAACT+GGG | + | chr1.1:57569063-57569082 | MS.gene062233:CDS | 40.0% | |
| GTCCTTCTTCATCCTTTAAC+TGG | - | chr1.1:57570738-57570757 | None:intergenic | 40.0% | |
| GTCGAACCACGTAAATTATG+TGG | + | chr1.1:57570276-57570295 | MS.gene062233:intron | 40.0% | |
| TATTTCTTATGACAGGGTCG+CGG | + | chr1.1:57571545-57571564 | MS.gene062233:intron | 40.0% | |
| TCATCAATAATCCATGGTCG+AGG | - | chr1.1:57569933-57569952 | None:intergenic | 40.0% | |
| TCCAGGTCATCAATAATCCA+TGG | - | chr1.1:57569939-57569958 | None:intergenic | 40.0% | |
| TGAGGAAGTCCTAAAAGAAC+TGG | + | chr1.1:57569062-57569081 | MS.gene062233:CDS | 40.0% | |
| TTTACCCATATTCTTGCTGC+AGG | - | chr1.1:57569223-57569242 | None:intergenic | 40.0% | |
| ! | ACCATGGATTATTGATGACC+TGG | + | chr1.1:57569935-57569954 | MS.gene062233:CDS | 40.0% |
| ! | CCTTTGTTGATGGATGATAC+TGG | + | chr1.1:57568290-57568309 | MS.gene062233:CDS | 40.0% |
| ! | TACATTCTTGCATGGATTGC+AGG | + | chr1.1:57570918-57570937 | MS.gene062233:intron | 40.0% |
| ! | TGATGTATTTTGTCCAAGGG+TGG | + | chr1.1:57570038-57570057 | MS.gene062233:intron | 40.0% |
| AAGGAAGATCCTGCAAGTCA+TGG | + | chr1.1:57568873-57568892 | MS.gene062233:CDS | 45.0% | |
| ATGTCATCAAGATAGGGGGA+TGG | + | chr1.1:57569309-57569328 | MS.gene062233:intron | 45.0% | |
| CGAGAGATCTTACTTGTAGG+AGG | - | chr1.1:57568426-57568445 | None:intergenic | 45.0% | |
| GATGAAGAAGGACGTCTCTT+GGG | + | chr1.1:57570745-57570764 | MS.gene062233:CDS | 45.0% | |
| GCAGGGAACGTATTTGATCT+TGG | + | chr1.1:57569517-57569536 | MS.gene062233:CDS | 45.0% | |
| GGAAGAAGGCAAGTGTCATA+TGG | + | chr1.1:57569991-57570010 | MS.gene062233:intron | 45.0% | |
| GGCAAGTAGTAGATCACAGT+TGG | + | chr1.1:57568259-57568278 | MS.gene062233:CDS | 45.0% | |
| GGTGAGATTCCCTTTGTTGA+TGG | + | chr1.1:57568280-57568299 | MS.gene062233:CDS | 45.0% | |
| TATGACACTTGCCTTCTTCC+AGG | - | chr1.1:57569991-57570010 | None:intergenic | 45.0% | |
| TTAAGCAGTGGGAGAAGGAT+GGG | + | chr1.1:57570356-57570375 | MS.gene062233:intron | 45.0% | |
| TTGTGTTAAGCAGTGGGAGA+AGG | + | chr1.1:57570351-57570370 | MS.gene062233:intron | 45.0% | |
| ! | AGAGGATTTCCATGACTTGC+AGG | - | chr1.1:57568885-57568904 | None:intergenic | 45.0% |
| ! | AGCTAGGCTTTGTAGAAAGG+GGG | - | chr1.1:57571106-57571125 | None:intergenic | 45.0% |
| ! | ATTTGATCTTGGTTCTCCCC+AGG | + | chr1.1:57569528-57569547 | MS.gene062233:CDS | 45.0% |
| ! | CAGCTAGGCTTTGTAGAAAG+GGG | - | chr1.1:57571107-57571126 | None:intergenic | 45.0% |
| ! | CTCTGAACCCCAGTTCTTTT+AGG | - | chr1.1:57569074-57569093 | None:intergenic | 45.0% |
| ! | GCAGAAGCTTTCTCTAGAGA+TGG | + | chr1.1:57569873-57569892 | MS.gene062233:CDS | 45.0% |
| ! | GCAGCTAGGCTTTGTAGAAA+GGG | - | chr1.1:57571108-57571127 | None:intergenic | 45.0% |
| ! | GCTTTTATGCAGACTTCGTG+AGG | + | chr1.1:57569044-57569063 | MS.gene062233:intron | 45.0% |
| !! | TCGGCTTTATTTGCAGCATC+AGG | - | chr1.1:57568561-57568580 | None:intergenic | 45.0% |
| AAAACCTTCTCCCTCGACCA+TGG | + | chr1.1:57569919-57569938 | MS.gene062233:CDS | 50.0% | |
| ACGACACGTGGATCATCAGA+AGG | - | chr1.1:57568356-57568375 | None:intergenic | 50.0% | |
| ACTCAGCATGCACCATTCCT+TGG | + | chr1.1:57568324-57568343 | MS.gene062233:CDS | 50.0% | |
| AGAAGGGAACCTCCAAGGAA+TGG | - | chr1.1:57568339-57568358 | None:intergenic | 50.0% | |
| ATCAAGATAGGGGGATGGAG+TGG | + | chr1.1:57569314-57569333 | MS.gene062233:intron | 50.0% | |
| CGAAGAAGCTCCCTTGCAAA+TGG | - | chr1.1:57570145-57570164 | None:intergenic | 50.0% | |
| CGACACGTGGATCATCAGAA+GGG | - | chr1.1:57568355-57568374 | None:intergenic | 50.0% | |
| GAGCAAGAAGTCCTGGAAGA+AGG | + | chr1.1:57569977-57569996 | MS.gene062233:CDS | 50.0% | |
| GGAACGGGGGAATAGTTGAT+TGG | + | chr1.1:57571397-57571416 | MS.gene062233:intron | 50.0% | |
| GGATGAAGAAGGACGTCTCT+TGG | + | chr1.1:57570744-57570763 | MS.gene062233:CDS | 50.0% | |
| GTCGTGTGAATTTCGCAGCT+AGG | - | chr1.1:57571122-57571141 | None:intergenic | 50.0% | |
| GTTAAGCAGTGGGAGAAGGA+TGG | + | chr1.1:57570355-57570374 | MS.gene062233:intron | 50.0% | |
| TAAGCAGTGGGAGAAGGATG+GGG | + | chr1.1:57570357-57570376 | MS.gene062233:intron | 50.0% | |
| TAATCCATGGTCGAGGGAGA+AGG | - | chr1.1:57569926-57569945 | None:intergenic | 50.0% | |
| TCACTCCCACTGAGTTATCG+TGG | + | chr1.1:57568375-57568394 | MS.gene062233:CDS | 50.0% | |
| TCATCAGAAGGGAACCTCCA+AGG | - | chr1.1:57568344-57568363 | None:intergenic | 50.0% | |
| TGAGATGGAGCAAGAAGTCC+TGG | + | chr1.1:57569970-57569989 | MS.gene062233:CDS | 50.0% | |
| ! | CGCAGCTAGGCTTTGTAGAA+AGG | - | chr1.1:57571109-57571128 | None:intergenic | 50.0% |
| CAAGGGAGCTTCTTCGTCGT+GGG | + | chr1.1:57570149-57570168 | MS.gene062233:CDS | 55.0% | |
| CAGCATGCACCATTCCTTGG+AGG | + | chr1.1:57568327-57568346 | MS.gene062233:CDS | 55.0% | |
| GCAAGGGAGCTTCTTCGTCG+TGG | + | chr1.1:57570148-57570167 | MS.gene062233:CDS | 60.0% | |
| GCTTCTTCGTCGTGGGAGTC+AGG | + | chr1.1:57570156-57570175 | MS.gene062233:CDS | 60.0% | |
| TCAGTGGGAGTGACGACACG+TGG | - | chr1.1:57568368-57568387 | None:intergenic | 60.0% | |
| GCAGTGGGAGAAGGATGGGG+AGG | + | chr1.1:57570360-57570379 | MS.gene062233:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 57568257 | 57571785 | 57568257 | ID=MS.gene062233 |
| chr1.1 | mRNA | 57568257 | 57571785 | 57568257 | ID=MS.gene062233.t1;Parent=MS.gene062233 |
| chr1.1 | exon | 57568257 | 57568432 | 57568257 | ID=MS.gene062233.t1.exon1;Parent=MS.gene062233.t1 |
| chr1.1 | CDS | 57568257 | 57568432 | 57568257 | ID=cds.MS.gene062233.t1;Parent=MS.gene062233.t1 |
| chr1.1 | exon | 57568530 | 57568595 | 57568530 | ID=MS.gene062233.t1.exon2;Parent=MS.gene062233.t1 |
| chr1.1 | CDS | 57568530 | 57568595 | 57568530 | ID=cds.MS.gene062233.t1;Parent=MS.gene062233.t1 |
| chr1.1 | exon | 57568848 | 57568914 | 57568848 | ID=MS.gene062233.t1.exon3;Parent=MS.gene062233.t1 |
| chr1.1 | CDS | 57568848 | 57568914 | 57568848 | ID=cds.MS.gene062233.t1;Parent=MS.gene062233.t1 |
| chr1.1 | exon | 57569045 | 57569113 | 57569045 | ID=MS.gene062233.t1.exon4;Parent=MS.gene062233.t1 |
| chr1.1 | CDS | 57569045 | 57569113 | 57569045 | ID=cds.MS.gene062233.t1;Parent=MS.gene062233.t1 |
| chr1.1 | exon | 57569409 | 57569549 | 57569409 | ID=MS.gene062233.t1.exon5;Parent=MS.gene062233.t1 |
| chr1.1 | CDS | 57569409 | 57569549 | 57569409 | ID=cds.MS.gene062233.t1;Parent=MS.gene062233.t1 |
| chr1.1 | exon | 57569870 | 57569998 | 57569870 | ID=MS.gene062233.t1.exon6;Parent=MS.gene062233.t1 |
| chr1.1 | CDS | 57569870 | 57569998 | 57569870 | ID=cds.MS.gene062233.t1;Parent=MS.gene062233.t1 |
| chr1.1 | exon | 57570091 | 57570177 | 57570091 | ID=MS.gene062233.t1.exon7;Parent=MS.gene062233.t1 |
| chr1.1 | CDS | 57570091 | 57570177 | 57570091 | ID=cds.MS.gene062233.t1;Parent=MS.gene062233.t1 |
| chr1.1 | exon | 57570590 | 57570664 | 57570590 | ID=MS.gene062233.t1.exon8;Parent=MS.gene062233.t1 |
| chr1.1 | CDS | 57570590 | 57570664 | 57570590 | ID=cds.MS.gene062233.t1;Parent=MS.gene062233.t1 |
| chr1.1 | exon | 57570739 | 57570816 | 57570739 | ID=MS.gene062233.t1.exon9;Parent=MS.gene062233.t1 |
| chr1.1 | CDS | 57570739 | 57570816 | 57570739 | ID=cds.MS.gene062233.t1;Parent=MS.gene062233.t1 |
| chr1.1 | exon | 57570940 | 57571017 | 57570940 | ID=MS.gene062233.t1.exon10;Parent=MS.gene062233.t1 |
| chr1.1 | CDS | 57570940 | 57571017 | 57570940 | ID=cds.MS.gene062233.t1;Parent=MS.gene062233.t1 |
| chr1.1 | exon | 57571560 | 57571622 | 57571560 | ID=MS.gene062233.t1.exon11;Parent=MS.gene062233.t1 |
| chr1.1 | CDS | 57571560 | 57571622 | 57571560 | ID=cds.MS.gene062233.t1;Parent=MS.gene062233.t1 |
| chr1.1 | exon | 57571711 | 57571785 | 57571711 | ID=MS.gene062233.t1.exon12;Parent=MS.gene062233.t1 |
| chr1.1 | CDS | 57571711 | 57571785 | 57571711 | ID=cds.MS.gene062233.t1;Parent=MS.gene062233.t1 |
| Gene Sequence |
| Protein sequence |
