AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06097


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06097.t1 MTR_8g099665 96.748 369 8 3 1 366 1 368 0.0 715
MS.gene06097.t1 MTR_1g090400 45.161 186 91 4 181 365 193 368 4.31e-46 161
MS.gene06097.t1 MTR_7g104720 43.373 166 83 3 202 365 248 404 2.92e-41 149
MS.gene06097.t1 MTR_7g106500 37.719 228 113 6 154 365 64 278 2.12e-40 144
MS.gene06097.t1 MTR_3g017490 44.937 158 76 4 211 365 111 260 4.86e-36 132
MS.gene06097.t1 MTR_5g083110 44.304 158 79 4 210 366 90 239 7.28e-36 131
MS.gene06097.t1 MTR_8g106900 45.181 166 81 3 205 365 113 273 5.32e-35 129
MS.gene06097.t1 MTR_7g090230 39.752 161 81 4 211 365 274 424 5.23e-32 125
MS.gene06097.t1 MTR_7g010090 30.476 315 157 10 88 365 142 431 9.50e-32 124
MS.gene06097.t1 MTR_8g038440 41.176 153 84 3 215 365 106 254 1.60e-30 117
MS.gene06097.t1 MTR_6g011640 37.129 202 105 6 181 365 200 396 3.31e-30 119
MS.gene06097.t1 MTR_1g051180 37.870 169 85 4 209 365 203 363 2.81e-29 116
MS.gene06097.t1 MTR_5g072400 41.139 158 82 4 211 366 106 254 5.14e-28 110
MS.gene06097.t1 MTR_3g465550 39.735 151 83 4 211 360 84 227 3.76e-27 107
MS.gene06097.t1 MTR_3g071510 35.714 154 90 4 214 366 90 235 6.98e-25 101
MS.gene06097.t1 MTR_3g030520 37.267 161 80 5 222 365 142 298 4.65e-21 92.4
MS.gene06097.t1 MTR_7g079015 38.542 96 51 4 255 346 1 92 7.06e-13 64.7
MS.gene06097.t1 MTR_2g026830 38.043 92 53 3 255 346 1 88 4.14e-12 62.4
MS.gene06097.t1 MTR_1g098230 39.286 84 44 3 267 346 12 92 1.47e-11 60.8
MS.gene06097.t1 MTR_1g053325 37.778 90 52 3 255 342 1 88 9.36e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06097.t1 AT1G64500 42.347 392 174 13 1 366 1 366 7.57e-93 282
MS.gene06097.t1 AT5G06470 37.652 247 108 8 148 365 9 238 1.73e-41 145
MS.gene06097.t1 AT4G10630 42.424 198 101 5 180 365 137 333 3.48e-41 147
MS.gene06097.t1 AT5G03870 42.654 211 103 5 157 365 189 383 4.35e-40 146
MS.gene06097.t1 AT5G39865 46.386 166 76 3 213 365 223 388 4.13e-39 143
MS.gene06097.t1 AT5G01420 41.317 167 90 3 200 365 241 400 3.96e-37 138
MS.gene06097.t1 AT3G28850 41.011 178 80 3 213 365 249 426 6.46e-35 133
MS.gene06097.t1 AT3G57070 41.401 157 85 3 211 365 264 415 1.92e-34 131
MS.gene06097.t1 AT1G32760 46.784 171 84 3 200 365 145 313 3.45e-33 126
MS.gene06097.t1 AT5G13810 41.509 159 80 5 211 365 123 272 6.84e-32 121
MS.gene06097.t1 AT5G58530 39.752 161 87 4 211 365 109 265 9.92e-31 118
MS.gene06097.t1 AT2G41330 39.869 153 84 3 215 365 254 400 2.77e-30 120
MS.gene06097.t1 AT3G11773 42.000 150 77 3 217 365 9 149 1.13e-29 112
MS.gene06097.t1 AT3G11773 29.596 223 111 6 157 365 9 199 3.19e-17 79.7

Find 110 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGTGAAGGGTAGGTATT+TGG 0.146439 4.2:-4166993 MS.gene06097:CDS
TCGAGAGAATAGAAAGATTA+AGG 0.197504 4.2:-4167267 MS.gene06097:CDS
CAACAAAGCAAGAGACTTAT+TGG 0.220866 4.2:-4167137 MS.gene06097:CDS
GGGTTAGATTTGTTCCTTGT+TGG 0.297441 4.2:-4166859 MS.gene06097:CDS
GGGTGGGTTGGATGAGTTGA+TGG 0.303606 4.2:-4166972 MS.gene06097:CDS
TTATTATCGGAGGAAGAGTT+AGG 0.318401 4.2:-4167040 MS.gene06097:CDS
GAGACTTATTGGAGAATCAT+AGG 0.318410 4.2:-4167126 MS.gene06097:CDS
TTTGTGAAGGGTAGGTATTT+GGG 0.321727 4.2:-4166992 MS.gene06097:CDS
AGTGAAGGAGTTGTTATTAT+CGG 0.324310 4.2:-4167053 MS.gene06097:CDS
CGTCGGTGGTGGCTGGTATA+CGG 0.337782 4.2:+4167795 None:intergenic
AGTTGTAAGTTGGTTACTGC+TGG 0.359692 4.2:-4166824 MS.gene06097:CDS
TTCTTGGGAGATGGTGTTGT+TGG 0.375160 4.2:+4167711 None:intergenic
ACTACGGCGTCGTTTCCATT+TGG 0.388509 4.2:+4167208 None:intergenic
GGTTAGATTTGTTCCTTGTT+GGG 0.389547 4.2:-4166858 MS.gene06097:CDS
AAGGGTGTGGTGGATGTGGT+GGG 0.409163 4.2:-4166880 MS.gene06097:CDS
CAAGGGTGTGGTGGATGTGG+TGG 0.419400 4.2:-4166881 MS.gene06097:CDS
GGGTTGGTGTGGTCTTGCCA+AGG 0.424049 4.2:-4167018 MS.gene06097:CDS
CTTAATGAAACGGGTCGACT+TGG 0.425286 4.2:-4166947 MS.gene06097:CDS
GAACAGCGGGTTTGAGTTGT+TGG 0.436431 4.2:+4167599 None:intergenic
GGTGATGGTGGTGTTGGTTG+AGG 0.438551 4.2:+4167568 None:intergenic
AGACAAGGGTGTGGTGGATG+TGG 0.440591 4.2:-4166884 MS.gene06097:CDS
GAGCGTGACGTGGCACTTCA+TGG 0.441197 4.2:-4167091 MS.gene06097:CDS
CTAACTTCATCCCATGATTG+AGG 0.443754 4.2:+4167631 None:intergenic
TTGTGGTGGGAGTTGTAAGT+TGG 0.448165 4.2:-4166834 MS.gene06097:CDS
TTTCTGGATAGTTGCTTAGT+GGG 0.451141 4.2:+4167239 None:intergenic
GGGTAGGTATTTGGGTGGGT+TGG 0.455353 4.2:-4166984 MS.gene06097:CDS
AGAATAGGAGGAGGTAGAGC+AGG 0.459393 4.2:+4167682 None:intergenic
GACGGTGGTGATGGTGGTGT+TGG 0.459996 4.2:+4167562 None:intergenic
ACGGCGTCGTTTCCATTTGG+TGG 0.460113 4.2:+4167211 None:intergenic
GTTGTAAGTTGGTTACTGCT+GGG 0.466872 4.2:-4166823 MS.gene06097:CDS
GAAATTAATTAAAGACAAGT+AGG 0.467808 4.2:+4166752 None:intergenic
GCATCCAGGATGTGGAGAAT+AGG 0.473396 4.2:+4167667 None:intergenic
TTCCTTGTTGGGATTGTGGT+GGG 0.474378 4.2:-4166847 MS.gene06097:CDS
TCCTCCTATTCTCCACATCC+TGG 0.477131 4.2:-4167671 MS.gene06097:CDS
TGCCCCAAGTGTAATGAGAA+TGG 0.478008 4.2:-4166788 MS.gene06097:CDS
CGAAACTCGTCGGTGGTGGC+TGG 0.479813 4.2:+4167788 None:intergenic
GTTGATGGAGCTTAATGAAA+CGG 0.485172 4.2:-4166957 MS.gene06097:CDS
GTTGGTTGAGATTGTGGTTG+TGG 0.490105 4.2:+4167418 None:intergenic
TATTATCGGAGGAAGAGTTA+GGG 0.490482 4.2:-4167039 MS.gene06097:CDS
TGGTGTTGTTGGTGTTGTTG+AGG 0.493565 4.2:+4167722 None:intergenic
GGTGGTGATGACGGTGGTGA+TGG 0.493874 4.2:+4167553 None:intergenic
GCAACCTTACGTGGTGGTTG+TGG 0.496711 4.2:+4167520 None:intergenic
GGTTGGTGTGGTCTTGCCAA+GGG 0.497158 4.2:-4167017 MS.gene06097:CDS
GCCCCAAGTGTAATGAGAAT+GGG 0.500482 4.2:-4166787 MS.gene06097:CDS
TTTCAGTAGCATCCAGGATG+TGG 0.500760 4.2:+4167659 None:intergenic
GGTTGTGGTTGTTGCGATGG+TGG 0.504135 4.2:+4167535 None:intergenic
TTGATGGAGCTTAATGAAAC+GGG 0.505824 4.2:-4166956 MS.gene06097:CDS
TGAGGAAGTTGTTGAACAGC+GGG 0.508452 4.2:+4167586 None:intergenic
TTCTTCGTTGGTTGAGATTG+TGG 0.509177 4.2:+4167412 None:intergenic
TAACCCATTCTCATTACACT+TGG 0.509664 4.2:+4166784 None:intergenic
TTGCCAAGGGTGTTTGTGAA+GGG 0.511271 4.2:-4167004 MS.gene06097:CDS
TGGCTGGTATACGGCGGGTG+CGG 0.511794 4.2:+4167804 None:intergenic
AACCCATTCTCATTACACTT+GGG 0.515602 4.2:+4166785 None:intergenic
GGTGATGACGGTGGTGATGG+TGG 0.516672 4.2:+4167556 None:intergenic
CTTGCCAAGGGTGTTTGTGA+AGG 0.518157 4.2:-4167005 MS.gene06097:CDS
GTGAAGGGTAGGTATTTGGG+TGG 0.520089 4.2:-4166989 MS.gene06097:CDS
ACCGCGAAACTCGTCGGTGG+TGG 0.521658 4.2:+4167784 None:intergenic
TCGGAGGAAGAGTTAGGGGT+TGG 0.522640 4.2:-4167034 MS.gene06097:CDS
GGTGGTTGTGGTTGTTGCGA+TGG 0.524805 4.2:+4167532 None:intergenic
TGAAGGGTAGGTATTTGGGT+GGG 0.529660 4.2:-4166988 MS.gene06097:CDS
AGGGTGTGGTGGATGTGGTG+GGG 0.535711 4.2:-4166879 MS.gene06097:CDS
GCCACCACCGACGAGTTTCG+CGG 0.538659 4.2:-4167785 MS.gene06097:CDS
ACGAAGAACGTTGTTGATGT+TGG 0.540254 4.2:-4167397 MS.gene06097:CDS
AGACATACTAGAGAAACAAA+AGG 0.541873 4.2:-4167308 MS.gene06097:CDS
TTGTAAGTTGGTTACTGCTG+GGG 0.542030 4.2:-4166822 MS.gene06097:CDS
GTTGGAAGACAAGGGTGTGG+TGG 0.542555 4.2:-4166890 MS.gene06097:CDS
GGTGGTGGCTGGTATACGGC+GGG 0.546279 4.2:+4167799 None:intergenic
ACCCATTCTCATTACACTTG+GGG 0.546633 4.2:+4166786 None:intergenic
TCCAGGATGTGGAGAATAGG+AGG 0.547468 4.2:+4167670 None:intergenic
AGACTTATTGGAGAATCATA+GGG 0.547504 4.2:-4167125 MS.gene06097:CDS
ACATCAACAACGTTCTTCGT+TGG 0.551192 4.2:+4167400 None:intergenic
TTTGTTCCTTGTTGGGATTG+TGG 0.552057 4.2:-4166851 MS.gene06097:CDS
CTACCCTTCACAAACACCCT+TGG 0.555761 4.2:+4167001 None:intergenic
ACAACCACAACCACCACGTA+AGG 0.559602 4.2:-4167524 MS.gene06097:CDS
TAACTCTTCGAGTGTGTGAA+AGG 0.560614 4.2:+4167495 None:intergenic
ATTAAAGACAAGTAGGGCAA+TGG 0.560759 4.2:+4166759 None:intergenic
GAGAGAGGTGTTGGAAGACA+AGG 0.562632 4.2:-4166899 MS.gene06097:CDS
ACACGTGTGGAGAGAGGTGT+TGG 0.566087 4.2:-4166908 MS.gene06097:CDS
CAAGGGTGTTTGTGAAGGGT+AGG 0.566480 4.2:-4167000 MS.gene06097:CDS
TTAATGAAACGGGTCGACTT+GGG 0.568465 4.2:-4166946 MS.gene06097:CDS
TTTGTCATCATCAAAACTGA+AGG 0.573178 4.2:-4167350 MS.gene06097:CDS
TGTTGCGATGGTGGTGATGA+CGG 0.575646 4.2:+4167544 None:intergenic
ATTATCGGAGGAAGAGTTAG+GGG 0.578446 4.2:-4167038 MS.gene06097:CDS
CGGTGGTGGCTGGTATACGG+CGG 0.578466 4.2:+4167798 None:intergenic
GTTCCTTGTTGGGATTGTGG+TGG 0.579622 4.2:-4166848 MS.gene06097:CDS
CGATGTTGTATATATTACTA+CGG 0.583173 4.2:+4167192 None:intergenic
GAGAATAGAAAGATTAAGGA+GGG 0.583465 4.2:-4167263 MS.gene06097:CDS
GGTTGAGATTGTGGTTGTGG+TGG 0.587118 4.2:+4167421 None:intergenic
AAATTAATTAAAGACAAGTA+GGG 0.595843 4.2:+4166753 None:intergenic
GAAGGAGTTGTTATTATCGG+AGG 0.597320 4.2:-4167050 MS.gene06097:CDS
TGTAAGTTGGTTACTGCTGG+GGG 0.598859 4.2:-4166821 MS.gene06097:CDS
GGTGTTGGAAGACAAGGGTG+TGG 0.601057 4.2:-4166893 MS.gene06097:CDS
AGAGAGGTGTTGGAAGACAA+GGG 0.609103 4.2:-4166898 MS.gene06097:CDS
GGAAGAGTTAGGGGTTGGTG+TGG 0.612906 4.2:-4167029 MS.gene06097:CDS
AGAGAATAGAAAGATTAAGG+AGG 0.613300 4.2:-4167264 MS.gene06097:CDS
ATGAAACGGGTCGACTTGGG+AGG 0.616823 4.2:-4166943 MS.gene06097:CDS
GATATTGAATGCGACACGTG+TGG 0.626654 4.2:-4166921 MS.gene06097:CDS
AGGATGTGGAGAATAGGAGG+AGG 0.636781 4.2:+4167673 None:intergenic
CTCCCACCACAATCCCAACA+AGG 0.638521 4.2:+4166845 None:intergenic
TAAACGCCATCGAAGAGCCA+TGG 0.640163 4.2:-4167753 MS.gene06097:CDS
TTGAGGAAGTTGTTGAACAG+CGG 0.650382 4.2:+4167585 None:intergenic
TGTGTTTGATGAGCGTGACG+TGG 0.654924 4.2:-4167101 MS.gene06097:CDS
TCGAACACCGCGAAACTCGT+CGG 0.663637 4.2:+4167778 None:intergenic
ATATATACAACATCGTTGAG+AGG 0.672095 4.2:-4167184 MS.gene06097:CDS
AATGCGACACGTGTGGAGAG+AGG 0.678434 4.2:-4166914 MS.gene06097:CDS
AACACCGCGAAACTCGTCGG+TGG 0.682439 4.2:+4167781 None:intergenic
TGAAAGGAAGCAACCTTACG+TGG 0.693400 4.2:+4167511 None:intergenic
AAGGAAGCAACCTTACGTGG+TGG 0.725083 4.2:+4167514 None:intergenic
TTGTTGATGTTGGTTCAGTG+AGG 0.729785 4.2:-4167387 MS.gene06097:CDS
TGCGATGGTGGTGATGACGG+TGG 0.737769 4.2:+4167547 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! CGATGTTGTATATATTACTA+CGG + chr4.2:4167409-4167428 None:intergenic 25.0%
AGACATACTAGAGAAACAAA+AGG - chr4.2:4167290-4167309 MS.gene06097:CDS 30.0%
AGACTTATTGGAGAATCATA+GGG - chr4.2:4167473-4167492 MS.gene06097:CDS 30.0%
AGAGAATAGAAAGATTAAGG+AGG - chr4.2:4167334-4167353 MS.gene06097:CDS 30.0%
ATATATACAACATCGTTGAG+AGG - chr4.2:4167414-4167433 MS.gene06097:CDS 30.0%
GAGAATAGAAAGATTAAGGA+GGG - chr4.2:4167335-4167354 MS.gene06097:CDS 30.0%
TCGAGAGAATAGAAAGATTA+AGG - chr4.2:4167331-4167350 MS.gene06097:CDS 30.0%
TGAAAAATCTCCTCAATCAT+GGG - chr4.2:4166957-4166976 MS.gene06097:CDS 30.0%
TTTGTCATCATCAAAACTGA+AGG - chr4.2:4167248-4167267 MS.gene06097:CDS 30.0%
! ACTTCATGGAGAGTTTTTAA+AGG - chr4.2:4167521-4167540 MS.gene06097:CDS 30.0%
! AGTGAAGGAGTTGTTATTAT+CGG - chr4.2:4167545-4167564 MS.gene06097:CDS 30.0%
!! AGAGTTTTTAAAGGAAGTGA+AGG - chr4.2:4167530-4167549 MS.gene06097:CDS 30.0%
!!! AGTTTTGATGATGACAAAGA+TGG + chr4.2:4167246-4167265 None:intergenic 30.0%
AACCCATTCTCATTACACTT+GGG + chr4.2:4167816-4167835 None:intergenic 35.0%
CAACAAAGCAAGAGACTTAT+TGG - chr4.2:4167461-4167480 MS.gene06097:CDS 35.0%
CTGAAAAATCTCCTCAATCA+TGG - chr4.2:4166956-4166975 MS.gene06097:CDS 35.0%
GAGACTTATTGGAGAATCAT+AGG - chr4.2:4167472-4167491 MS.gene06097:CDS 35.0%
TAACCCATTCTCATTACACT+TGG + chr4.2:4167817-4167836 None:intergenic 35.0%
TATTATCGGAGGAAGAGTTA+GGG - chr4.2:4167559-4167578 MS.gene06097:CDS 35.0%
TTATTATCGGAGGAAGAGTT+AGG - chr4.2:4167558-4167577 MS.gene06097:CDS 35.0%
TTGATGGAGCTTAATGAAAC+GGG - chr4.2:4167642-4167661 MS.gene06097:CDS 35.0%
TTTCTGGATAGTTGCTTAGT+GGG + chr4.2:4167362-4167381 None:intergenic 35.0%
TTTGTGAAGGGTAGGTATTT+GGG - chr4.2:4167606-4167625 MS.gene06097:CDS 35.0%
! GGTTAGATTTGTTCCTTGTT+GGG - chr4.2:4167740-4167759 MS.gene06097:CDS 35.0%
! GTTGATGGAGCTTAATGAAA+CGG - chr4.2:4167641-4167660 MS.gene06097:CDS 35.0%
! TAGAGCAGGTTTTTCTTCTT+GGG + chr4.2:4166905-4166924 None:intergenic 35.0%
! TTTTCTGGATAGTTGCTTAG+TGG + chr4.2:4167363-4167382 None:intergenic 35.0%
ACATCAACAACGTTCTTCGT+TGG + chr4.2:4167201-4167220 None:intergenic 40.0%
ACCCATTCTCATTACACTTG+GGG + chr4.2:4167815-4167834 None:intergenic 40.0%
ACGAAGAACGTTGTTGATGT+TGG - chr4.2:4167201-4167220 MS.gene06097:CDS 40.0%
ATTATCGGAGGAAGAGTTAG+GGG - chr4.2:4167560-4167579 MS.gene06097:CDS 40.0%
CCAGAAAAATGTCCACCAAA+TGG - chr4.2:4167375-4167394 MS.gene06097:CDS 40.0%
CTAACTTCATCCCATGATTG+AGG + chr4.2:4166970-4166989 None:intergenic 40.0%
GTTTGTGAAGGGTAGGTATT+TGG - chr4.2:4167605-4167624 MS.gene06097:CDS 40.0%
TAACTCTTCGAGTGTGTGAA+AGG + chr4.2:4167106-4167125 None:intergenic 40.0%
TTGAGGAAGTTGTTGAACAG+CGG + chr4.2:4167016-4167035 None:intergenic 40.0%
TTTGTTCCTTGTTGGGATTG+TGG - chr4.2:4167747-4167766 MS.gene06097:CDS 40.0%
! AGGTTTTTCTTCTTGGGAGA+TGG + chr4.2:4166899-4166918 None:intergenic 40.0%
! GAAGGAGTTGTTATTATCGG+AGG - chr4.2:4167548-4167567 MS.gene06097:CDS 40.0%
! GGGTTAGATTTGTTCCTTGT+TGG - chr4.2:4167739-4167758 MS.gene06097:CDS 40.0%
! GTAGAGCAGGTTTTTCTTCT+TGG + chr4.2:4166906-4166925 None:intergenic 40.0%
! TTAATGAAACGGGTCGACTT+GGG - chr4.2:4167652-4167671 MS.gene06097:CDS 40.0%
! TTCTTCGTTGGTTGAGATTG+TGG + chr4.2:4167189-4167208 None:intergenic 40.0%
!! AGTTGTAAGTTGGTTACTGC+TGG - chr4.2:4167774-4167793 MS.gene06097:CDS 40.0%
!! CCATTTGGTGGACATTTTTC+TGG + chr4.2:4167378-4167397 None:intergenic 40.0%
!! GAGATTTTTCAGTAGCATCC+AGG + chr4.2:4166948-4166967 None:intergenic 40.0%
!! GGGACTCGTTTTTCTTCTTT+GGG + chr4.2:4167146-4167165 None:intergenic 40.0%
!! GTTGTAAGTTGGTTACTGCT+GGG - chr4.2:4167775-4167794 MS.gene06097:CDS 40.0%
!! TGGGACTCGTTTTTCTTCTT+TGG + chr4.2:4167147-4167166 None:intergenic 40.0%
!! TTGTAAGTTGGTTACTGCTG+GGG - chr4.2:4167776-4167795 MS.gene06097:CDS 40.0%
!! TTGTTGATGTTGGTTCAGTG+AGG - chr4.2:4167211-4167230 MS.gene06097:CDS 40.0%
!!! TTGTGGTGGTTTTAGTGACT+GGG + chr4.2:4167166-4167185 None:intergenic 40.0%
!!! TTGTTGAGGTGTTTTAGCCA+TGG + chr4.2:4166865-4166884 None:intergenic 40.0%
CTTAATGAAACGGGTCGACT+TGG - chr4.2:4167651-4167670 MS.gene06097:CDS 45.0%
GATATTGAATGCGACACGTG+TGG - chr4.2:4167677-4167696 MS.gene06097:CDS 45.0%
GCCCCAAGTGTAATGAGAAT+GGG - chr4.2:4167811-4167830 MS.gene06097:CDS 45.0%
GTTGGTTGAGATTGTGGTTG+TGG + chr4.2:4167183-4167202 None:intergenic 45.0%
TGAAAGGAAGCAACCTTACG+TGG + chr4.2:4167090-4167109 None:intergenic 45.0%
TGAAGGGTAGGTATTTGGGT+GGG - chr4.2:4167610-4167629 MS.gene06097:CDS 45.0%
TGAGGAAGTTGTTGAACAGC+GGG + chr4.2:4167015-4167034 None:intergenic 45.0%
TGCCCCAAGTGTAATGAGAA+TGG - chr4.2:4167810-4167829 MS.gene06097:CDS 45.0%
TTACTGCTGGGGGTGAAATA+AGG - chr4.2:4167787-4167806 MS.gene06097:CDS 45.0%
TTCCTTGTTGGGATTGTGGT+GGG - chr4.2:4167751-4167770 MS.gene06097:CDS 45.0%
TTTCAGTAGCATCCAGGATG+TGG + chr4.2:4166942-4166961 None:intergenic 45.0%
! TTGTGGTGGGAGTTGTAAGT+TGG - chr4.2:4167764-4167783 MS.gene06097:CDS 45.0%
! TTTTAGCCATGGCTCTTCGA+TGG + chr4.2:4166854-4166873 None:intergenic 45.0%
!! AGAGAGGTGTTGGAAGACAA+GGG - chr4.2:4167700-4167719 MS.gene06097:CDS 45.0%
!! TGGTGTTGTTGGTGTTGTTG+AGG + chr4.2:4166879-4166898 None:intergenic 45.0%
!! TGTAAGTTGGTTACTGCTGG+GGG - chr4.2:4167777-4167796 MS.gene06097:CDS 45.0%
!! TTCTTGGGAGATGGTGTTGT+TGG + chr4.2:4166890-4166909 None:intergenic 45.0%
!! TTGCCAAGGGTGTTTGTGAA+GGG - chr4.2:4167594-4167613 MS.gene06097:CDS 45.0%
!!! GTTGTGGTGGTTTTAGTGAC+TGG + chr4.2:4167167-4167186 None:intergenic 45.0%
AAGGAAGCAACCTTACGTGG+TGG + chr4.2:4167087-4167106 None:intergenic 50.0%
ACAACCACAACCACCACGTA+AGG - chr4.2:4167074-4167093 MS.gene06097:CDS 50.0%
ACTACGGCGTCGTTTCCATT+TGG + chr4.2:4167393-4167412 None:intergenic 50.0%
AGAATAGGAGGAGGTAGAGC+AGG + chr4.2:4166919-4166938 None:intergenic 50.0%
AGGATGTGGAGAATAGGAGG+AGG + chr4.2:4166928-4166947 None:intergenic 50.0%
CTACCCTTCACAAACACCCT+TGG + chr4.2:4167600-4167619 None:intergenic 50.0%
GCATCCAGGATGTGGAGAAT+AGG + chr4.2:4166934-4166953 None:intergenic 50.0%
GGTTGAGATTGTGGTTGTGG+TGG + chr4.2:4167180-4167199 None:intergenic 50.0%
GTGAAGGGTAGGTATTTGGG+TGG - chr4.2:4167609-4167628 MS.gene06097:CDS 50.0%
GTTCCTTGTTGGGATTGTGG+TGG - chr4.2:4167750-4167769 MS.gene06097:CDS 50.0%
TAAACGCCATCGAAGAGCCA+TGG - chr4.2:4166845-4166864 MS.gene06097:CDS 50.0%
TCCAGGATGTGGAGAATAGG+AGG + chr4.2:4166931-4166950 None:intergenic 50.0%
TCCTCCTATTCTCCACATCC+TGG - chr4.2:4166927-4166946 MS.gene06097:CDS 50.0%
TGTGTTTGATGAGCGTGACG+TGG - chr4.2:4167497-4167516 MS.gene06097:CDS 50.0%
! TGTTGCGATGGTGGTGATGA+CGG + chr4.2:4167057-4167076 None:intergenic 50.0%
!! CAAGGGTGTTTGTGAAGGGT+AGG - chr4.2:4167598-4167617 MS.gene06097:CDS 50.0%
!! CTTGCCAAGGGTGTTTGTGA+AGG - chr4.2:4167593-4167612 MS.gene06097:CDS 50.0%
!! GAACAGCGGGTTTGAGTTGT+TGG + chr4.2:4167002-4167021 None:intergenic 50.0%
!! GAGAGAGGTGTTGGAAGACA+AGG - chr4.2:4167699-4167718 MS.gene06097:CDS 50.0%
AATGCGACACGTGTGGAGAG+AGG - chr4.2:4167684-4167703 MS.gene06097:CDS 55.0%
ACGGCGTCGTTTCCATTTGG+TGG + chr4.2:4167390-4167409 None:intergenic 55.0%
CTCCCACCACAATCCCAACA+AGG + chr4.2:4167756-4167775 None:intergenic 55.0%
GCAACCTTACGTGGTGGTTG+TGG + chr4.2:4167081-4167100 None:intergenic 55.0%
GGGTAGGTATTTGGGTGGGT+TGG - chr4.2:4167614-4167633 MS.gene06097:CDS 55.0%
GGTGGTTGTGGTTGTTGCGA+TGG + chr4.2:4167069-4167088 None:intergenic 55.0%
GGTTGTGGTTGTTGCGATGG+TGG + chr4.2:4167066-4167085 None:intergenic 55.0%
TCGAACACCGCGAAACTCGT+CGG + chr4.2:4166823-4166842 None:intergenic 55.0%
TCGGAGGAAGAGTTAGGGGT+TGG - chr4.2:4167564-4167583 MS.gene06097:CDS 55.0%
! ACACGTGTGGAGAGAGGTGT+TGG - chr4.2:4167690-4167709 MS.gene06097:CDS 55.0%
! GGTGTTGGAAGACAAGGGTG+TGG - chr4.2:4167705-4167724 MS.gene06097:CDS 55.0%
! GGTTGGTGTGGTCTTGCCAA+GGG - chr4.2:4167581-4167600 MS.gene06097:CDS 55.0%
! GTTGGAAGACAAGGGTGTGG+TGG - chr4.2:4167708-4167727 MS.gene06097:CDS 55.0%
!! AAGGGTGTGGTGGATGTGGT+GGG - chr4.2:4167718-4167737 MS.gene06097:CDS 55.0%
!! AGACAAGGGTGTGGTGGATG+TGG - chr4.2:4167714-4167733 MS.gene06097:CDS 55.0%
!! ATGAAACGGGTCGACTTGGG+AGG - chr4.2:4167655-4167674 MS.gene06097:CDS 55.0%
!! GGAAGAGTTAGGGGTTGGTG+TGG - chr4.2:4167569-4167588 MS.gene06097:CDS 55.0%
!! GGGTGGGTTGGATGAGTTGA+TGG - chr4.2:4167626-4167645 MS.gene06097:CDS 55.0%
!! GGTGATGGTGGTGTTGGTTG+AGG + chr4.2:4167033-4167052 None:intergenic 55.0%
AACACCGCGAAACTCGTCGG+TGG + chr4.2:4166820-4166839 None:intergenic 60.0%
GAGCGTGACGTGGCACTTCA+TGG - chr4.2:4167507-4167526 MS.gene06097:CDS 60.0%
! CGTCGGTGGTGGCTGGTATA+CGG + chr4.2:4166806-4166825 None:intergenic 60.0%
!! AGGGTGTGGTGGATGTGGTG+GGG - chr4.2:4167719-4167738 MS.gene06097:CDS 60.0%
!! CAAGGGTGTGGTGGATGTGG+TGG - chr4.2:4167717-4167736 MS.gene06097:CDS 60.0%
!! GACGGTGGTGATGGTGGTGT+TGG + chr4.2:4167039-4167058 None:intergenic 60.0%
!! GGGTTGGTGTGGTCTTGCCA+AGG - chr4.2:4167580-4167599 MS.gene06097:CDS 60.0%
!! GGTGATGACGGTGGTGATGG+TGG + chr4.2:4167045-4167064 None:intergenic 60.0%
!! GGTGGTGATGACGGTGGTGA+TGG + chr4.2:4167048-4167067 None:intergenic 60.0%
!! TGCGATGGTGGTGATGACGG+TGG + chr4.2:4167054-4167073 None:intergenic 60.0%
ACCGCGAAACTCGTCGGTGG+TGG + chr4.2:4166817-4166836 None:intergenic 65.0%
GCCACCACCGACGAGTTTCG+CGG - chr4.2:4166813-4166832 MS.gene06097:CDS 65.0%
TGGCTGGTATACGGCGGGTG+CGG + chr4.2:4166797-4166816 None:intergenic 65.0%
! CGAAACTCGTCGGTGGTGGC+TGG + chr4.2:4166813-4166832 None:intergenic 65.0%
! CGGTGGTGGCTGGTATACGG+CGG + chr4.2:4166803-4166822 None:intergenic 65.0%
! GGTGGTGGCTGGTATACGGC+GGG + chr4.2:4166802-4166821 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 4166760 4167860 4166760 ID=MS.gene06097
chr4.2 mRNA 4166760 4167860 4166760 ID=MS.gene06097.t1;Parent=MS.gene06097
chr4.2 exon 4166760 4167860 4166760 ID=MS.gene06097.t1.exon1;Parent=MS.gene06097.t1
chr4.2 CDS 4166760 4167860 4166760 ID=cds.MS.gene06097.t1;Parent=MS.gene06097.t1
Gene Sequence

>MS.gene06097

ATGGGGTGTGCTAACTCTAAACGTATAGAAGCAACCGCACCCGCCGTATACCAGCCACCACCGACGAGTTTCGCGGTGTTCGACATAAACGCCATCGAAGAGCCATGGCTAAAACACCTCAACAACACCAACAACACCATCTCCCAAGAAGAAAAACCTGCTCTACCTCCTCCTATTCTCCACATCCTGGATGCTACTGAAAAATCTCCTCAATCATGGGATGAAGTTAGCAAAACACTCCAACAACTCAAACCCGCTGTTCAACAACTTCCTCAACCAACACCACCATCACCACCGTCATCACCACCATCGCAACAACCACAACCACCACGTAAGGTTGCTTCCTTTCACACACTCGAAGAGTTAGATGCAAAGTCAAGCAGCCCAAAGAAGAAAAACGAGTCCCAGTCACTAAAACCACCACAACCACAATCTCAACCAACGAAGAACGTTGTTGATGTTGGTTCAGTGAGGACATTAAAACCATCTTTGTCATCATCAAAACTGAAGGATAACATATTCATACAACGAGACATACTAGAGAAACAAAAGGAAGAGAAAGAATCGAATTTCGAGAGAATAGAAAGATTAAGGAGGGACCCACTAAGCAACTATCCAGAAAAATGTCCACCAAATGGAAACGACGCCGTAGTAATATATACAACATCGTTGAGAGGTGTAAGAAAGACGTTTGATAACTGCAACAAAGCAAGAGACTTATTGGAGAATCATAGGGTTGTGTTTGATGAGCGTGACGTGGCACTTCATGGAGAGTTTTTAAAGGAAGTGAAGGAGTTGTTATTATCGGAGGAAGAGTTAGGGGTTGGTGTGGTCTTGCCAAGGGTGTTTGTGAAGGGTAGGTATTTGGGTGGGTTGGATGAGTTGATGGAGCTTAATGAAACGGGTCGACTTGGGAGGATATTGAATGCGACACGTGTGGAGAGAGGTGTTGGAAGACAAGGGTGTGGTGGATGTGGTGGGGTTAGATTTGTTCCTTGTTGGGATTGTGGTGGGAGTTGTAAGTTGGTTACTGCTGGGGGTGAAATAAGGTGCCCCAAGTGTAATGAGAATGGGTTAGTCCATTGCCCTACTTGTCTTTAA

Protein sequence

>MS.gene06097.t1

MGCANSKRIEATAPAVYQPPPTSFAVFDINAIEEPWLKHLNNTNNTISQEEKPALPPPILHILDATEKSPQSWDEVSKTLQQLKPAVQQLPQPTPPSPPSSPPSQQPQPPRKVASFHTLEELDAKSSSPKKKNESQSLKPPQPQSQPTKNVVDVGSVRTLKPSLSSSKLKDNIFIQRDILEKQKEEKESNFERIERLRRDPLSNYPEKCPPNGNDAVVIYTTSLRGVRKTFDNCNKARDLLENHRVVFDERDVALHGEFLKEVKELLLSEEELGVGVVLPRVFVKGRYLGGLDELMELNETGRLGRILNATRVERGVGRQGCGGCGGVRFVPCWDCGGSCKLVTAGGEIRCPKCNENGLVHCPTCL