AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062234

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062234.t1 MTR_1g076710 99.120 341 2 1 1 341 1 340 0.0 680
MS.gene062234.t1 MTR_6g061670 53.061 343 113 13 1 326 1 312 1.65e-89 271
MS.gene062234.t1 MTR_6g061670 53.198 344 116 13 1 326 1 317 2.69e-89 271
MS.gene062234.t1 MTR_7g074935 54.035 285 99 8 1 272 1 266 3.70e-75 235
MS.gene062234.t1 MTR_4g101990 45.690 348 126 9 17 337 17 328 1.41e-63 205
MS.gene062234.t1 MTR_8g036160 43.243 333 120 8 1 291 1 306 1.36e-59 196
MS.gene062234.t1 MTR_1g061530 39.550 311 147 10 49 341 65 352 1.23e-50 172
MS.gene062234.t1 MTR_5g011680 42.254 284 121 9 14 264 3 276 2.41e-46 159
MS.gene062234.t1 MTR_8g031100 42.412 257 121 8 49 302 89 321 2.18e-43 153
MS.gene062234.t1 MTR_7g077120 41.026 234 116 4 48 278 88 302 1.96e-42 150
MS.gene062234.t1 MTR_5g010330 43.363 226 104 7 37 261 59 261 2.32e-42 149
MS.gene062234.t1 MTR_6g060670 42.534 221 95 5 46 266 117 305 7.13e-40 142
MS.gene062234.t1 MTR_5g011620 42.222 270 119 10 14 271 3 247 2.43e-38 145
MS.gene062234.t1 MTR_8g098390 39.035 228 121 5 48 274 96 306 5.86e-36 133
MS.gene062234.t1 MTR_4g098460 44.022 184 73 5 76 249 33 196 9.53e-32 120
MS.gene062234.t1 MTR_5g011610 48.684 152 66 4 132 277 51 196 1.25e-30 119
MS.gene062234.t1 MTR_5g011610 53.465 101 43 2 126 225 204 301 4.55e-21 92.4
MS.gene062234.t1 MTR_4g055803 40.865 208 93 7 48 248 59 243 1.36e-30 120
MS.gene062234.t1 MTR_4g055833 39.024 205 101 5 48 248 56 240 3.40e-30 118
MS.gene062234.t1 MTR_4g098460 42.857 189 73 6 76 249 33 201 2.84e-29 114
MS.gene062234.t1 MTR_1g079780 50.427 117 53 3 134 248 109 222 1.43e-27 110
MS.gene062234.t1 MTR_1g038960 40.196 204 97 5 47 248 83 263 1.45e-27 110
MS.gene062234.t1 MTR_7g116320 53.719 121 52 2 130 249 139 256 1.79e-27 110
MS.gene062234.t1 MTR_4g055813 49.254 134 60 3 117 248 6 133 2.40e-27 108
MS.gene062234.t1 MTR_7g116320 52.991 117 51 2 130 245 139 252 1.63e-25 103
MS.gene062234.t1 MTR_5g014360 37.379 206 95 7 52 248 123 303 1.28e-24 103
MS.gene062234.t1 MTR_3g100470 41.463 123 69 3 134 253 101 223 1.38e-23 99.0
MS.gene062234.t1 MTR_5g013390 33.636 220 116 7 47 260 79 274 8.27e-21 92.0
MS.gene062234.t1 MTR_4g055705 42.188 128 70 2 124 247 127 254 2.35e-20 90.1
MS.gene062234.t1 MTR_1g038990 34.314 204 92 6 47 248 80 243 2.04e-19 87.8
MS.gene062234.t1 MTR_3g116100 36.000 175 100 5 89 255 91 261 9.35e-19 86.3
MS.gene062234.t1 MTR_5g091630 38.172 186 89 6 69 249 23 187 1.02e-18 84.7
MS.gene062234.t1 MTR_5g041430 43.548 124 67 3 126 247 103 225 3.11e-18 84.3
MS.gene062234.t1 MTR_3g068035 43.966 116 61 2 134 248 106 218 1.56e-17 82.4
MS.gene062234.t1 MTR_5g066020 36.552 145 83 6 126 263 72 214 2.86e-17 80.5
MS.gene062234.t1 MTR_3g023560 38.843 121 67 2 132 248 60 177 3.87e-17 80.5
MS.gene062234.t1 MTR_5g011700 45.283 106 53 2 145 248 10 112 1.32e-16 77.4
MS.gene062234.t1 MTR_5g011520 37.654 162 81 4 88 248 97 239 2.98e-16 79.0
MS.gene062234.t1 MTR_7g080980 46.610 118 55 3 134 248 84 196 3.58e-16 77.8
MS.gene062234.t1 MTR_4g098450 44.068 118 58 3 134 248 103 215 1.20e-15 76.6
MS.gene062234.t1 MTR_1g044155 40.171 117 66 2 133 248 152 265 1.51e-15 77.0
MS.gene062234.t1 MTR_8g036060 37.736 159 79 4 91 248 86 225 1.53e-15 76.6
MS.gene062234.t1 MTR_5g080580 42.241 116 63 2 134 248 116 228 1.25e-14 73.9
MS.gene062234.t1 MTR_1g073860 38.793 116 67 2 134 248 121 233 9.46e-14 71.6
MS.gene062234.t1 MTR_1g079810 40.517 116 65 2 134 248 101 213 4.11e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062234.t1 AT4G25320 67.925 212 58 5 48 256 85 289 1.50e-84 261
MS.gene062234.t1 AT5G62260 64.545 220 64 7 49 261 76 288 1.84e-83 258
MS.gene062234.t1 AT5G62260 64.545 220 64 7 49 261 76 288 1.84e-83 258
MS.gene062234.t1 AT5G62260 62.150 214 67 7 49 255 76 282 4.90e-77 238
MS.gene062234.t1 AT4G12080 58.051 236 73 7 48 271 88 309 1.59e-75 236
MS.gene062234.t1 AT5G51590 59.016 244 63 6 34 251 64 296 3.29e-71 228
MS.gene062234.t1 AT4G22770 56.195 226 80 7 48 267 71 283 1.32e-58 192
MS.gene062234.t1 AT4G22770 56.195 226 80 7 48 267 71 283 1.32e-58 192
MS.gene062234.t1 AT4G00200 53.435 262 92 8 15 265 14 256 1.68e-56 186
MS.gene062234.t1 AT4G00200 53.435 262 92 8 15 265 14 256 1.68e-56 186
MS.gene062234.t1 AT2G33620 53.589 209 67 6 48 250 96 280 1.12e-52 177
MS.gene062234.t1 AT2G33620 53.589 209 67 6 48 250 96 280 1.12e-52 177
MS.gene062234.t1 AT2G33620 53.589 209 67 6 48 250 96 280 1.12e-52 177
MS.gene062234.t1 AT2G33620 53.589 209 67 6 48 250 96 280 1.12e-52 177
MS.gene062234.t1 AT2G45850 37.544 285 149 5 7 288 56 314 8.63e-45 157
MS.gene062234.t1 AT2G45850 37.544 285 149 5 7 288 56 314 8.63e-45 157
MS.gene062234.t1 AT1G63470 45.933 209 90 5 48 251 104 294 5.31e-44 155
MS.gene062234.t1 AT2G45850 40.000 240 118 4 7 243 56 272 1.02e-40 144
MS.gene062234.t1 AT4G17950 37.868 272 112 9 48 292 130 371 2.31e-39 144
MS.gene062234.t1 AT3G61310 46.377 207 86 6 45 249 97 280 2.90e-39 142
MS.gene062234.t1 AT5G46640 43.119 218 92 5 45 249 98 296 2.18e-37 138
MS.gene062234.t1 AT1G63480 40.385 208 92 6 48 251 98 277 9.20e-35 130
MS.gene062234.t1 AT1G63480 40.385 208 92 6 48 251 98 277 9.20e-35 130
MS.gene062234.t1 AT1G63480 40.385 208 92 6 48 251 92 271 1.05e-34 130
MS.gene062234.t1 AT1G63480 40.385 208 92 6 48 251 92 271 1.05e-34 130
MS.gene062234.t1 AT1G63480 40.385 208 92 6 48 251 92 271 1.05e-34 130
MS.gene062234.t1 AT1G63480 40.385 208 92 6 48 251 92 271 1.05e-34 130
MS.gene062234.t1 AT1G63480 40.385 208 92 6 48 251 92 271 1.05e-34 130
MS.gene062234.t1 AT3G04590 39.207 227 108 6 30 248 79 283 1.04e-32 124
MS.gene062234.t1 AT3G04590 39.207 227 108 6 30 248 79 283 6.56e-32 124
MS.gene062234.t1 AT2G36560 43.704 135 70 4 131 262 102 233 6.53e-24 102
MS.gene062234.t1 AT5G49700 37.778 135 78 4 134 262 83 217 2.85e-20 89.4
MS.gene062234.t1 AT2G42940 38.983 177 79 7 76 249 43 193 9.66e-19 84.7
MS.gene062234.t1 AT1G14490 37.500 144 83 5 126 262 41 184 1.49e-17 80.9
MS.gene062234.t1 AT1G14490 37.500 144 83 5 126 262 22 165 1.52e-17 80.5
MS.gene062234.t1 AT3G60870 40.517 116 63 3 134 248 86 196 3.73e-17 80.5
MS.gene062234.t1 AT4G14465 43.103 116 62 2 134 248 94 206 4.07e-16 77.8
MS.gene062234.t1 AT2G35270 39.130 161 74 5 91 248 78 217 8.82e-16 77.0
MS.gene062234.t1 AT3G55560 41.026 117 66 2 134 249 115 229 1.72e-14 73.6
MS.gene062234.t1 AT1G76500 35.200 125 68 3 134 248 99 220 1.50e-13 70.9
MS.gene062234.t1 AT4G17800 41.228 114 63 2 136 248 111 221 1.82e-13 70.5
MS.gene062234.t1 AT3G04570 38.710 124 64 3 134 248 107 227 2.31e-12 67.4
MS.gene062234.t1 AT5G28590 37.398 123 46 3 130 248 26 121 2.60e-12 65.9
MS.gene062234.t1 AT4G12050 40.171 117 65 3 134 248 145 258 8.77e-12 65.9
MS.gene062234.t1 AT4G22810 32.716 162 86 5 91 248 105 247 1.13e-11 65.5
MS.gene062234.t1 AT2G45430 34.969 163 82 5 91 248 89 232 1.63e-11 64.7
MS.gene062234.t1 AT4G35390 41.176 119 62 4 134 248 90 204 1.86e-11 64.3

Find 92 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGAAGAAAGAGAGAATTT+TGG 0.216956 1.1:+57560778 MS.gene062234:CDS
CTTCGTCAATCGACTTCTTC+AGG 0.300773 1.1:+57563851 MS.gene062234:CDS
CCACCCAATACTCGGCCATC+TGG 0.308208 1.1:-57564252 None:intergenic
TCCATTCTCAGTTGGCATAA+AGG 0.318075 1.1:-57564184 None:intergenic
AGGGGAAGACCAAGGAAGTA+TGG 0.321600 1.1:+57560931 MS.gene062234:CDS
AACGGTGCCGGTGTCGTTGC+CGG 0.338330 1.1:+57560888 MS.gene062234:CDS
GGCCCAGATGGCCGAGTATT+GGG 0.346491 1.1:+57564249 MS.gene062234:CDS
TTTGAGATTCTTTCCTTGTC+TGG 0.357599 1.1:+57564159 MS.gene062234:CDS
AATGCAGCAGGTGTCATAAA+AGG 0.358990 1.1:-57564561 None:intergenic
TATGTGCTTACAGTGAATTC+TGG 0.363275 1.1:+57563610 MS.gene062234:CDS
TCCTTTATGCCAACTGAGAA+TGG 0.367271 1.1:+57564183 MS.gene062234:CDS
TGGTGGGATGAGTGTCTCTT+TGG 0.369450 1.1:+57564224 MS.gene062234:CDS
AGGCCCAGATGGCCGAGTAT+TGG 0.385737 1.1:+57564248 MS.gene062234:CDS
GAGAGTTCTCTGCTTGGAAA+AGG 0.400231 1.1:+57561031 MS.gene062234:CDS
CTTGTAATTCCATTCTCAGT+TGG 0.403549 1.1:-57564192 None:intergenic
CCATCTGGCCCATACTTCCT+TGG 0.404209 1.1:-57560940 None:intergenic
GTCTCTTTGGCAGGCCCAGA+TGG 0.415568 1.1:+57564237 MS.gene062234:CDS
CAGAGATCCTTTACCTGAAA+AGG 0.415604 1.1:+57564656 MS.gene062234:CDS
GCTGGTTTGCTTATAGCTTC+CGG 0.419761 1.1:+57564282 MS.gene062234:CDS
TCCAAGTTGTTATCAATCCT+TGG 0.429223 1.1:-57560853 None:intergenic
TTCTTCTTCAAAGCTGTCTC+CGG 0.437794 1.1:-57560907 None:intergenic
AACGGAATCGACGATGAAAT+CGG 0.438353 1.1:-57561003 None:intergenic
GAAAGGGCAGTCACAGCTCC+AGG 0.442370 1.1:-57560973 None:intergenic
GATTTCTTCATAGATTCAAC+AGG 0.446009 1.1:-57561066 None:intergenic
TTCGTCAATCGACTTCTTCA+GGG 0.447507 1.1:+57563852 MS.gene062234:CDS
TGCATTCATTAGGTCGTTGT+GGG 0.460179 1.1:+57564396 MS.gene062234:intron
GGAATTACAAGAAGCAGATC+TGG 0.463594 1.1:+57564204 MS.gene062234:CDS
CCAGGAGCAGGCTTACCATC+TGG 0.464856 1.1:-57560955 None:intergenic
CCAGATGGTAAGCCTGCTCC+TGG 0.466966 1.1:+57560955 MS.gene062234:CDS
CACCCAATACTCGGCCATCT+GGG 0.474541 1.1:-57564251 None:intergenic
GTGTCTAATGAAGTAAGTTT+TGG 0.480216 1.1:+57564528 MS.gene062234:CDS
GCAGTCACAGCTCCAGGAGC+AGG 0.481704 1.1:-57560967 None:intergenic
GTATTGGGTGGTGGACTCGC+TGG 0.482204 1.1:+57564264 MS.gene062234:CDS
TATTGCACGTGATCCTTGTT+GGG 0.485487 1.1:-57563789 None:intergenic
CGACACCGGCACCGTTGCCA+TGG 0.488569 1.1:-57560881 None:intergenic
GGGATGAGTGTCTCTTTGGC+AGG 0.488739 1.1:+57564228 MS.gene062234:CDS
AGAGTTCTCTGCTTGGAAAA+GGG 0.491659 1.1:+57561032 MS.gene062234:CDS
CGAGTCCACCACCCAATACT+CGG 0.505760 1.1:-57564260 None:intergenic
TCTTCTTGATGAAATGCAGC+AGG 0.509824 1.1:-57564573 None:intergenic
AGCAAAACAGCAAGAAGCAG+AGG 0.510263 1.1:+57564445 MS.gene062234:CDS
ATCTCTGTCTTCAGCAGATG+AGG 0.527702 1.1:-57564640 None:intergenic
TCATCGTCGATTCCGTTGAC+CGG 0.533342 1.1:+57561009 MS.gene062234:CDS
ACAACAATGCTCAAGACTCT+AGG 0.534120 1.1:+57564613 MS.gene062234:CDS
ATATTGCACGTGATCCTTGT+TGG 0.537010 1.1:-57563790 None:intergenic
TATAGCTTCCGGTCCCGTGC+AGG 0.538508 1.1:+57564293 MS.gene062234:CDS
ATATGCATTCTCTCTGCCAC+TGG 0.540565 1.1:+57563809 MS.gene062234:CDS
TTTGGAGCTGTGAATGTAGT+GGG 0.544951 1.1:+57560796 MS.gene062234:CDS
GATGGCCGAGTATTGGGTGG+TGG 0.550417 1.1:+57564255 MS.gene062234:CDS
TCTGCTTGGAAAAGGGGTAG+AGG 0.550814 1.1:+57561039 MS.gene062234:CDS
GTGCATTCATTAGGTCGTTG+TGG 0.552620 1.1:+57564395 MS.gene062234:intron
ATGAAATCGGCATAGGCGAA+AGG 0.554540 1.1:-57560990 None:intergenic
TGAAATCGGCATAGGCGAAA+GGG 0.554696 1.1:-57560989 None:intergenic
CCAAGGAAGTATGGGCCAGA+TGG 0.554974 1.1:+57560940 MS.gene062234:CDS
TCCAAGGATTGATAACAACT+TGG 0.557972 1.1:+57560852 MS.gene062234:CDS
GCTGTCTCCGGCAACGACAC+CGG 0.564357 1.1:-57560895 None:intergenic
GGGGAAGACCAAGGAAGTAT+GGG 0.568941 1.1:+57560932 MS.gene062234:CDS
AGACAGCTTTGAAGAAGAAG+AGG 0.569402 1.1:+57560911 MS.gene062234:CDS
CTGCTTGGAAAAGGGGTAGA+GGG 0.570135 1.1:+57561040 MS.gene062234:CDS
TGAGCTTTCAAGCTGCTCCA+AGG 0.570496 1.1:+57560836 MS.gene062234:CDS
GACAGCTTTGAAGAAGAAGA+GGG 0.570605 1.1:+57560912 MS.gene062234:CDS
AAGCACATAAGCTGTGAAGT+TGG 0.573504 1.1:-57563596 None:intergenic
GAGGGAATTGCATACTCAGT+AGG 0.575333 1.1:+57563571 MS.gene062234:CDS
GTAGGTGGAGGTGTAAGTGA+GGG 0.576701 1.1:+57563553 MS.gene062234:CDS
TGACCGGAGAGTTCTCTGCT+TGG 0.577376 1.1:+57561025 MS.gene062234:CDS
GCAGAGAACTCTCCGGTCAA+CGG 0.579815 1.1:-57561021 None:intergenic
GAGTTCTCTGCTTGGAAAAG+GGG 0.582449 1.1:+57561033 MS.gene062234:CDS
TGTAGGTGGAGGTGTAAGTG+AGG 0.583447 1.1:+57563552 MS.gene062234:CDS
TTTCCAAGCAGAGAACTCTC+CGG 0.583652 1.1:-57561028 None:intergenic
TGATGATTAACATGTGGAGG+AGG 0.584845 1.1:-57564504 None:intergenic
TAAATAATACCTTGCACAGG+TGG 0.587655 1.1:-57561114 None:intergenic
TTTGAAAGTCCACCTGTGCA+AGG 0.595210 1.1:+57561105 MS.gene062234:CDS
GGAGCAGCTTGAAAGCTCAC+AGG 0.597686 1.1:-57560832 None:intergenic
AAACAGCAAGAAGCAGAGGG+TGG 0.602793 1.1:+57564449 MS.gene062234:CDS
GAATGTAGTGGGTGGTAATG+AGG 0.604474 1.1:+57560807 MS.gene062234:CDS
TGGCATAAAGGAACCAGACA+AGG 0.611075 1.1:-57564172 None:intergenic
TCGTCAATCGACTTCTTCAG+GGG 0.612115 1.1:+57563853 MS.gene062234:CDS
AAAATTATGTCCTCCCAACA+AGG 0.612526 1.1:+57563776 MS.gene062234:CDS
TGCACGTGATCCTTGTTGGG+AGG 0.616462 1.1:-57563786 None:intergenic
CTATAAATAATACCTTGCAC+AGG 0.627082 1.1:-57561117 None:intergenic
ATTACAAGAAGCAGATCTGG+TGG 0.630094 1.1:+57564207 MS.gene062234:CDS
GCAAAACAGCAAGAAGCAGA+GGG 0.637562 1.1:+57564446 MS.gene062234:CDS
AACATTTGAAATTGTGCCAG+TGG 0.637698 1.1:-57563825 None:intergenic
ACATGATGATTAACATGTGG+AGG 0.639570 1.1:-57564507 None:intergenic
CCAGATGGCCGAGTATTGGG+TGG 0.641351 1.1:+57564252 MS.gene062234:CDS
GACACATGATGATTAACATG+TGG 0.651610 1.1:-57564510 None:intergenic
ATCGACGATGAAATCGGCAT+AGG 0.666533 1.1:-57560997 None:intergenic
TTACAAGAAGCAGATCTGGT+GGG 0.675023 1.1:+57564208 MS.gene062234:CDS
AGAAGAAGAGGGGAAGACCA+AGG 0.680559 1.1:+57560923 MS.gene062234:CDS
GGAGCTGTGAATGTAGTGGG+TGG 0.692986 1.1:+57560799 MS.gene062234:CDS
GCTTACAGTGAATTCTGGCG+AGG 0.694276 1.1:+57563615 MS.gene062234:CDS
ACAGCTTTGAAGAAGAAGAG+GGG 0.698390 1.1:+57560913 MS.gene062234:CDS
CGTCAATCGACTTCTTCAGG+GGG 0.699414 1.1:+57563854 MS.gene062234:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATTTTTATATTTAAT+GGG + chr1.1:57563384-57563403 MS.gene062234:intron 0.0%
!!! TATTTTATTTTTATATTTAA+TGG + chr1.1:57563383-57563402 MS.gene062234:intron 0.0%
!! AAGAAAATTATAAGAAAAAA+AGG - chr1.1:57561202-57561221 None:intergenic 10.0%
!! TTAAGTATTATGTAAATTAT+TGG - chr1.1:57562343-57562362 None:intergenic 10.0%
!! ACCATATAAAATATGATAAA+AGG - chr1.1:57563655-57563674 None:intergenic 15.0%
!! ATAAAATATGATAAAAGGAA+AGG - chr1.1:57563650-57563669 None:intergenic 15.0%
!! ATTAAGAACAAGTTAAAATT+TGG - chr1.1:57561863-57561882 None:intergenic 15.0%
!! TGAATGTTAAAAAAAAACAA+AGG - chr1.1:57562171-57562190 None:intergenic 15.0%
!!! TAAAGAATCTTCTAAAATTA+GGG + chr1.1:57563086-57563105 MS.gene062234:intron 15.0%
!!! TAGTTTTTGAATTTCATTTT+TGG + chr1.1:57563691-57563710 MS.gene062234:intron 15.0%
!!! TCCTTTTATCATATTTTATA+TGG + chr1.1:57563651-57563670 MS.gene062234:intron 15.0%
!!! TTATCATATTTTATATGGTA+TGG + chr1.1:57563656-57563675 MS.gene062234:intron 15.0%
!!! TTTATTTTTGTGAACTATAA+AGG + chr1.1:57563441-57563460 MS.gene062234:intron 15.0%
!! TAATAACTATGCCAAAAAAA+TGG - chr1.1:57562203-57562222 None:intergenic 20.0%
!! TATGTTGAAAAAATAACAAG+AGG - chr1.1:57561349-57561368 None:intergenic 20.0%
!! TCTTCTTATAAAGGAAAATA+AGG - chr1.1:57561631-57561650 None:intergenic 20.0%
!! TGTGATAGAGTTTATATTTA+GGG + chr1.1:57561477-57561496 MS.gene062234:intron 20.0%
!! TTGTGATAGAGTTTATATTT+AGG + chr1.1:57561476-57561495 MS.gene062234:intron 20.0%
!!! CTTTTATATAATGAATGAAC+TGG + chr1.1:57563410-57563429 MS.gene062234:intron 20.0%
!!! GTAAAGAATCTTCTAAAATT+AGG + chr1.1:57563085-57563104 MS.gene062234:intron 20.0%
!!! TACTTTTCTTCTTCTTATAA+AGG - chr1.1:57561640-57561659 None:intergenic 20.0%
!!! TTTTAACTTGTTCTTAATCA+TGG + chr1.1:57561865-57561884 MS.gene062234:intron 20.0%
!!! TTTTTGAGTTCTAATTGTTA+TGG + chr1.1:57561399-57561418 MS.gene062234:intron 20.0%
! AAATGGTTAGAGTAAATGAA+GGG + chr1.1:57561679-57561698 MS.gene062234:intron 25.0%
! AACACAATTATTTATGGACT+CGG + chr1.1:57562933-57562952 MS.gene062234:intron 25.0%
! AACTACATAAAATACGTACA+AGG - chr1.1:57563533-57563552 None:intergenic 25.0%
! AGAGATTTATAGAACGTATT+AGG + chr1.1:57562076-57562095 MS.gene062234:intron 25.0%
! AGTATTGCATTATATGACAA+TGG + chr1.1:57561656-57561675 MS.gene062234:intron 25.0%
! AGTGGAATTCATTATTATTC+AGG + chr1.1:57561287-57561306 MS.gene062234:intron 25.0%
! ATGTTGCAAGATAAAGAAAA+GGG - chr1.1:57562709-57562728 None:intergenic 25.0%
! ATTAAATACATGAATTGAGC+TGG + chr1.1:57563178-57563197 MS.gene062234:intron 25.0%
! CAAAGATCATTACTTAATAC+TGG + chr1.1:57562674-57562693 MS.gene062234:intron 25.0%
! CTAAAAGTTTCAGAAAAATG+TGG - chr1.1:57562549-57562568 None:intergenic 25.0%
! GGTTCTTTAATTGTTTAAGA+GGG + chr1.1:57562854-57562873 MS.gene062234:intron 25.0%
! GTATGGAACACAATTATTTA+TGG + chr1.1:57562927-57562946 MS.gene062234:intron 25.0%
! GTGATAGAGTTTATATTTAG+GGG + chr1.1:57561478-57561497 MS.gene062234:intron 25.0%
! TAATTGTGTTCCATACTTTA+CGG - chr1.1:57562923-57562942 None:intergenic 25.0%
! TCTATATTTGAACAAGATCT+GGG + chr1.1:57562833-57562852 MS.gene062234:intron 25.0%
! TCTTCTTGTAAAAAATAGAG+TGG + chr1.1:57561942-57561961 MS.gene062234:intron 25.0%
! TGATAGAGTTTATATTTAGG+GGG + chr1.1:57561479-57561498 MS.gene062234:intron 25.0%
! TTCAGAAAAATGTGGTATTA+GGG - chr1.1:57562541-57562560 None:intergenic 25.0%
! TTCTATATTTGAACAAGATC+TGG + chr1.1:57562832-57562851 MS.gene062234:intron 25.0%
! TTTCAGAAAAATGTGGTATT+AGG - chr1.1:57562542-57562561 None:intergenic 25.0%
! TTTCTATTATTGAAGTCTCT+TGG + chr1.1:57563270-57563289 MS.gene062234:intron 25.0%
!! ACATTTTTGTCTTAATCATC+GGG - chr1.1:57561920-57561939 None:intergenic 25.0%
!! CACATTTTTGTCTTAATCAT+CGG - chr1.1:57561921-57561940 None:intergenic 25.0%
!! CATTTGTTTCTCTATCATAT+TGG + chr1.1:57563938-57563957 MS.gene062234:intron 25.0%
!! GTAATAAAGAAATTCTAGAG+AGG - chr1.1:57563472-57563491 None:intergenic 25.0%
!! TACGTATTTTATGTAGTTGT+AGG + chr1.1:57563535-57563554 MS.gene062234:intron 25.0%
!! TCTTTGAAGGTTATGAATTA+AGG + chr1.1:57562888-57562907 MS.gene062234:intron 25.0%
!!! GGTTTTATTCGTCTAATATT+GGG - chr1.1:57562509-57562528 None:intergenic 25.0%
!!! TCCATCAGTATTTTAATCAA+AGG + chr1.1:57561983-57562002 MS.gene062234:intron 25.0%
!!! TGTTTGTTTTACGAGTTTTT+TGG - chr1.1:57562431-57562450 None:intergenic 25.0%
!!! TTTTGGTTGCATATAGTATA+AGG + chr1.1:57562040-57562059 MS.gene062234:intron 25.0%
AACAATACATGGCAGTAAAT+TGG - chr1.1:57563126-57563145 None:intergenic 30.0%
ACTATTAGACTCATTCTAGT+TGG - chr1.1:57561706-57561725 None:intergenic 30.0%
AGGTTGTATTTGTTCTGTTT+AGG + chr1.1:57561590-57561609 MS.gene062234:intron 30.0%
ATTATTAAGAGCAATCTCCT+AGG + chr1.1:57561892-57561911 MS.gene062234:intron 30.0%
ATTATTCAAACCAACCAACA+AGG - chr1.1:57561805-57561824 None:intergenic 30.0%
CATATAAACGAAGGACTTTA+TGG - chr1.1:57563972-57563991 None:intergenic 30.0%
CATATAATACAAGACAGACA+TGG - chr1.1:57563998-57564017 None:intergenic 30.0%
CATATAGTATAAGGTATGCT+TGG + chr1.1:57562049-57562068 MS.gene062234:intron 30.0%
CTAAAATTAGGGCCATAATA+GGG + chr1.1:57563097-57563116 MS.gene062234:intron 30.0%
CTATAAATAATACCTTGCAC+AGG - chr1.1:57561120-57561139 None:intergenic 30.0%
CTCTGAATATAGCATGTTTA+GGG - chr1.1:57562257-57562276 None:intergenic 30.0%
CTTTAATTGTTTAAGAGGGT+TGG + chr1.1:57562858-57562877 MS.gene062234:intron 30.0%
CTTTGTATTCAGATCTGAAA+AGG - chr1.1:57561533-57561552 None:intergenic 30.0%
GAAATGGTTAGAGTAAATGA+AGG + chr1.1:57561678-57561697 MS.gene062234:intron 30.0%
GAAGAAGCTTATGTATCATT+CGG - chr1.1:57563349-57563368 None:intergenic 30.0%
GATGTTGCAAGATAAAGAAA+AGG - chr1.1:57562710-57562729 None:intergenic 30.0%
GATTTCTTCATAGATTCAAC+AGG - chr1.1:57561069-57561088 None:intergenic 30.0%
GCATTATATGACAATGGAAA+TGG + chr1.1:57561662-57561681 MS.gene062234:intron 30.0%
GCCTTTGATTAAAATACTGA+TGG - chr1.1:57561987-57562006 None:intergenic 30.0%
GGAGTTAAGACTTTCAAATA+TGG + chr1.1:57563199-57563218 MS.gene062234:intron 30.0%
GGGTTCTTTAATTGTTTAAG+AGG + chr1.1:57562853-57562872 MS.gene062234:intron 30.0%
GGTTGTATTTGTTCTGTTTA+GGG + chr1.1:57561591-57561610 MS.gene062234:intron 30.0%
TAAATGCTAAAATGAGCATG+TGG - chr1.1:57563721-57563740 None:intergenic 30.0%
TCTCTGAATATAGCATGTTT+AGG - chr1.1:57562258-57562277 None:intergenic 30.0%
TGAATAATAGGCTGCAAAAT+AGG + chr1.1:57561817-57561836 MS.gene062234:intron 30.0%
TTCAATTTCATTTATGCCCT+TGG + chr1.1:57564115-57564134 MS.gene062234:intron 30.0%
TTTATATGGTATGGATCAAG+TGG + chr1.1:57563665-57563684 MS.gene062234:intron 30.0%
! AAGTTTGCAGAAGAGATTTT+TGG + chr1.1:57562023-57562042 MS.gene062234:intron 30.0%
! ATGGAAGAAAGAGAGAATTT+TGG + chr1.1:57560778-57560797 MS.gene062234:CDS 30.0%
! ATTAAAGTCCCTCATTTTGT+TGG - chr1.1:57562128-57562147 None:intergenic 30.0%
! GTATTTTATGTAGTTGTAGG+TGG + chr1.1:57563538-57563557 MS.gene062234:intron 30.0%
! GTGTCTAATGAAGTAAGTTT+TGG + chr1.1:57564528-57564547 MS.gene062234:CDS 30.0%
! TAACAACTTGGATTTTTCCA+TGG + chr1.1:57560864-57560883 MS.gene062234:CDS 30.0%
! TCTAAAATTAGGGCCATAAT+AGG + chr1.1:57563096-57563115 MS.gene062234:intron 30.0%
! TTGAGTTCTAATTGTTATGG+AGG + chr1.1:57561402-57561421 MS.gene062234:intron 30.0%
!! GAATTGTGTGTTGTTTAACA+TGG + chr1.1:57562753-57562772 MS.gene062234:intron 30.0%
!! TATTTTTGTGGTTGAAAGTG+AGG + chr1.1:57561570-57561589 MS.gene062234:intron 30.0%
!! TCTAATGAAGTAAGTTTTGG+TGG + chr1.1:57564531-57564550 MS.gene062234:CDS 30.0%
!! TGTTGGTTGGTTTGAATAAT+AGG + chr1.1:57561805-57561824 MS.gene062234:intron 30.0%
!! TTACTTATGTTTCTGAGGTT+TGG + chr1.1:57561228-57561247 MS.gene062234:intron 30.0%
!!! AATTTTGAGTTTCCCTTCTA+TGG + chr1.1:57564048-57564067 MS.gene062234:intron 30.0%
!!! GGGTTTTATTCGTCTAATAT+TGG - chr1.1:57562510-57562529 None:intergenic 30.0%
!!! TTTCTGAAACTTTTAGTTGC+TGG + chr1.1:57562553-57562572 MS.gene062234:intron 30.0%
AAAATTATGTCCTCCCAACA+AGG + chr1.1:57563776-57563795 MS.gene062234:CDS 35.0%
AAAGGATGAGGTAGATTTGA+AGG - chr1.1:57563311-57563330 None:intergenic 35.0%
AATAGAGTGGTCTCTTAGAA+TGG + chr1.1:57561955-57561974 MS.gene062234:intron 35.0%
ACATGATGATTAACATGTGG+AGG - chr1.1:57564510-57564529 None:intergenic 35.0%
AGAGTTTATATTTAGGGGGT+GGG + chr1.1:57561483-57561502 MS.gene062234:intron 35.0%
AGATCTGAATACAAAGTGTG+AGG + chr1.1:57561537-57561556 MS.gene062234:intron 35.0%
ATCAATTGATGGAGAAAGAC+AGG - chr1.1:57563507-57563526 None:intergenic 35.0%
CACTATGTTGTGCATTCATT+AGG + chr1.1:57564386-57564405 MS.gene062234:intron 35.0%
CATCTTACTAATCACCTTGT+TGG + chr1.1:57561788-57561807 MS.gene062234:intron 35.0%
CTTGTAATTCCATTCTCAGT+TGG - chr1.1:57564195-57564214 None:intergenic 35.0%
GAAATTTCTGTGTGAAGAAG+AGG + chr1.1:57562101-57562120 MS.gene062234:intron 35.0%
GACACATGATGATTAACATG+TGG - chr1.1:57564513-57564532 None:intergenic 35.0%
GTACAAGGAAGATCAATTGA+TGG - chr1.1:57563518-57563537 None:intergenic 35.0%
TAAATAATACCTTGCACAGG+TGG - chr1.1:57561117-57561136 None:intergenic 35.0%
TAGAGTTTATATTTAGGGGG+TGG + chr1.1:57561482-57561501 MS.gene062234:intron 35.0%
TATGTGCTTACAGTGAATTC+TGG + chr1.1:57563610-57563629 MS.gene062234:CDS 35.0%
TCACTAACTCCATACTGAAT+CGG + chr1.1:57564078-57564097 MS.gene062234:intron 35.0%
TCCAAGTTGTTATCAATCCT+TGG - chr1.1:57560856-57560875 None:intergenic 35.0%
TGAAAAGGAATCTCAGCTAA+GGG - chr1.1:57561518-57561537 None:intergenic 35.0%
TTACTAATCACCTTGTTGGT+TGG + chr1.1:57561792-57561811 MS.gene062234:intron 35.0%
! AACATTTGAAATTGTGCCAG+TGG - chr1.1:57563828-57563847 None:intergenic 35.0%
! CTACCTCATCCTTTAAAAGA+TGG + chr1.1:57563317-57563336 MS.gene062234:intron 35.0%
! CTATGATTAGAGTCCTTTTC+AGG - chr1.1:57564672-57564691 None:intergenic 35.0%
! GACTGTTACTTATGTTTCTG+AGG + chr1.1:57561223-57561242 MS.gene062234:intron 35.0%
! GTGGTATTAGGGATGTTTTA+GGG - chr1.1:57562530-57562549 None:intergenic 35.0%
! TATTTATGGACTCGGTTATG+TGG + chr1.1:57562941-57562960 MS.gene062234:intron 35.0%
! TCCAAGGATTGATAACAACT+TGG + chr1.1:57560852-57560871 MS.gene062234:CDS 35.0%
! TGTGGTATTAGGGATGTTTT+AGG - chr1.1:57562531-57562550 None:intergenic 35.0%
! TTGGGAGGACATAATTTTCA+TGG - chr1.1:57563774-57563793 None:intergenic 35.0%
! TTTGAGATTCTTTCCTTGTC+TGG + chr1.1:57564159-57564178 MS.gene062234:CDS 35.0%
! TTTTATGTAGTTGTAGGTGG+AGG + chr1.1:57563541-57563560 MS.gene062234:intron 35.0%
!! CAGTTTTTGAGAAATGAGAG+TGG + chr1.1:57561269-57561288 MS.gene062234:intron 35.0%
!! GATCCATCTTTTAAAGGATG+AGG - chr1.1:57563323-57563342 None:intergenic 35.0%
!! TATGTAACACCGATTCAGTA+TGG - chr1.1:57564090-57564109 None:intergenic 35.0%
!!! CACATGTTCTGCCATTTTTT+TGG + chr1.1:57562189-57562208 MS.gene062234:intron 35.0%
!!! TTAGAGTCCTTTTCAGGTAA+AGG - chr1.1:57564666-57564685 None:intergenic 35.0%
AAATTAGGGCCATAATAGGG+TGG + chr1.1:57563100-57563119 MS.gene062234:intron 40.0%
AACGGAATCGACGATGAAAT+CGG - chr1.1:57561006-57561025 None:intergenic 40.0%
AAGCACATAAGCTGTGAAGT+TGG - chr1.1:57563599-57563618 None:intergenic 40.0%
AATGATCTTTGTCCCTTCTC+CGG - chr1.1:57562665-57562684 None:intergenic 40.0%
ACAACAATGCTCAAGACTCT+AGG + chr1.1:57564613-57564632 MS.gene062234:CDS 40.0%
ACATCCAAGTAAGACGAATG+CGG + chr1.1:57562725-57562744 MS.gene062234:intron 40.0%
ACATGGCTGCATATAAACGA+AGG - chr1.1:57563981-57564000 None:intergenic 40.0%
AGAAGAGGACCAACAAAATG+AGG + chr1.1:57562116-57562135 MS.gene062234:intron 40.0%
AGAGTTCTCTGCTTGGAAAA+GGG + chr1.1:57561032-57561051 MS.gene062234:CDS 40.0%
AGTTTATATTTAGGGGGTGG+GGG + chr1.1:57561485-57561504 MS.gene062234:intron 40.0%
ATATTGCACGTGATCCTTGT+TGG - chr1.1:57563793-57563812 None:intergenic 40.0%
ATGCACAACATAGTGAGTGT+TGG - chr1.1:57564381-57564400 None:intergenic 40.0%
ATGTATTGTTGCGATGTGTG+AGG + chr1.1:57563136-57563155 MS.gene062234:intron 40.0%
ATTACAAGAAGCAGATCTGG+TGG + chr1.1:57564207-57564226 MS.gene062234:CDS 40.0%
CAGAGATCCTTTACCTGAAA+AGG + chr1.1:57564656-57564675 MS.gene062234:CDS 40.0%
CCTGTAATTCCATTCACCAA+GGG - chr1.1:57564134-57564153 None:intergenic 40.0%
CCTTGGTGAATGGAATTACA+GGG + chr1.1:57564132-57564151 MS.gene062234:intron 40.0%
CTGAAAAGGAATCTCAGCTA+AGG - chr1.1:57561519-57561538 None:intergenic 40.0%
CTGCACTATGTCATAGTATG+TGG + chr1.1:57562982-57563001 MS.gene062234:intron 40.0%
CTGCTACATACTTCCAATAG+TGG + chr1.1:57562632-57562651 MS.gene062234:intron 40.0%
CTTGGTGAATGGAATTACAG+GGG + chr1.1:57564133-57564152 MS.gene062234:intron 40.0%
GAAGAGGACCAACAAAATGA+GGG + chr1.1:57562117-57562136 MS.gene062234:intron 40.0%
GACTACACAATGTTGATCCA+GGG + chr1.1:57563060-57563079 MS.gene062234:intron 40.0%
GAGTTTATATTTAGGGGGTG+GGG + chr1.1:57561484-57561503 MS.gene062234:intron 40.0%
GGAATTACAAGAAGCAGATC+TGG + chr1.1:57564204-57564223 MS.gene062234:CDS 40.0%
GTAAATTGGCCACCCTATTA+TGG - chr1.1:57563112-57563131 None:intergenic 40.0%
TAGAAGATTCTTTACTGCCC+TGG - chr1.1:57563080-57563099 None:intergenic 40.0%
TATTGCACGTGATCCTTGTT+GGG - chr1.1:57563792-57563811 None:intergenic 40.0%
TCACACATCGCAACAATACA+TGG - chr1.1:57563137-57563156 None:intergenic 40.0%
TCATTTATGCCCTTGGTGAA+TGG + chr1.1:57564122-57564141 MS.gene062234:intron 40.0%
TCCATACTTTACGGCTTTCT+AGG - chr1.1:57562914-57562933 None:intergenic 40.0%
TCCATTCTCAGTTGGCATAA+AGG - chr1.1:57564187-57564206 None:intergenic 40.0%
TCCTTTATGCCAACTGAGAA+TGG + chr1.1:57564183-57564202 MS.gene062234:CDS 40.0%
TCTGAATACAAAGTGTGAGG+TGG + chr1.1:57561540-57561559 MS.gene062234:intron 40.0%
TCTTCTTGATGAAATGCAGC+AGG - chr1.1:57564576-57564595 None:intergenic 40.0%
TGACTACACAATGTTGATCC+AGG + chr1.1:57563059-57563078 MS.gene062234:intron 40.0%
TGATGATTAACATGTGGAGG+AGG - chr1.1:57564507-57564526 None:intergenic 40.0%
TGCATTCATTAGGTCGTTGT+GGG + chr1.1:57564396-57564415 MS.gene062234:intron 40.0%
TTACAAGAAGCAGATCTGGT+GGG + chr1.1:57564208-57564227 MS.gene062234:CDS 40.0%
TTCTTCTTCAAAGCTGTCTC+CGG - chr1.1:57560910-57560929 None:intergenic 40.0%
! AATGCAGCAGGTGTCATAAA+AGG - chr1.1:57564564-57564583 None:intergenic 40.0%
! AGTGAGTCGATTCCATAGAA+GGG - chr1.1:57564063-57564082 None:intergenic 40.0%
! ATTGGAAGTATGTAGCAGAG+CGG - chr1.1:57562630-57562649 None:intergenic 40.0%
! CGGTCAGATCCATCTTTTAA+AGG - chr1.1:57563329-57563348 None:intergenic 40.0%
! CTTGGATTTTTCCATGGCAA+CGG + chr1.1:57560870-57560889 MS.gene062234:CDS 40.0%
! GATTTTCTATGCTCTGTCTC+AGG + chr1.1:57563742-57563761 MS.gene062234:intron 40.0%
! TAGTGAGTCGATTCCATAGA+AGG - chr1.1:57564064-57564083 None:intergenic 40.0%
! TTCGTCAATCGACTTCTTCA+GGG + chr1.1:57563852-57563871 MS.gene062234:CDS 40.0%
! TTTGGAGCTGTGAATGTAGT+GGG + chr1.1:57560796-57560815 MS.gene062234:CDS 40.0%
!! ACAGCTTTGAAGAAGAAGAG+GGG + chr1.1:57560913-57560932 MS.gene062234:CDS 40.0%
!! AGACAGCTTTGAAGAAGAAG+AGG + chr1.1:57560911-57560930 MS.gene062234:CDS 40.0%
!! GACAGCTTTGAAGAAGAAGA+GGG + chr1.1:57560912-57560931 MS.gene062234:CDS 40.0%
!! GGTGGATGTGGATATTTTTG+TGG + chr1.1:57561558-57561577 MS.gene062234:intron 40.0%
!!! TTTTGGAGCTGTGAATGTAG+TGG + chr1.1:57560795-57560814 MS.gene062234:CDS 40.0%
AGCAAAACAGCAAGAAGCAG+AGG + chr1.1:57564445-57564464 MS.gene062234:CDS 45.0%
ATACTTCCAATAGTGGCCAG+TGG + chr1.1:57562639-57562658 MS.gene062234:intron 45.0%
ATATGCATTCTCTCTGCCAC+TGG + chr1.1:57563809-57563828 MS.gene062234:CDS 45.0%
ATCGACGATGAAATCGGCAT+AGG - chr1.1:57561000-57561019 None:intergenic 45.0%
ATCTCTGTCTTCAGCAGATG+AGG - chr1.1:57564643-57564662 None:intergenic 45.0%
ATGAAATCGGCATAGGCGAA+AGG - chr1.1:57560993-57561012 None:intergenic 45.0%
ATGTCCGCATTCGTCTTACT+TGG - chr1.1:57562732-57562751 None:intergenic 45.0%
CCCTGTAATTCCATTCACCA+AGG - chr1.1:57564135-57564154 None:intergenic 45.0%
CCCTTGGTGAATGGAATTAC+AGG + chr1.1:57564131-57564150 MS.gene062234:intron 45.0%
GAGAGTTCTCTGCTTGGAAA+AGG + chr1.1:57561031-57561050 MS.gene062234:CDS 45.0%
GAGGGAATTGCATACTCAGT+AGG + chr1.1:57563571-57563590 MS.gene062234:CDS 45.0%
GAGTTCTCTGCTTGGAAAAG+GGG + chr1.1:57561033-57561052 MS.gene062234:CDS 45.0%
GCAAAACAGCAAGAAGCAGA+GGG + chr1.1:57564446-57564465 MS.gene062234:CDS 45.0%
GCCTAGAAAGCCGTAAAGTA+TGG + chr1.1:57562910-57562929 MS.gene062234:intron 45.0%
GTCTTAATCATCGGGTTCCT+AGG - chr1.1:57561912-57561931 None:intergenic 45.0%
GTGCATTCATTAGGTCGTTG+TGG + chr1.1:57564395-57564414 MS.gene062234:intron 45.0%
GTTTATATTTAGGGGGTGGG+GGG + chr1.1:57561486-57561505 MS.gene062234:intron 45.0%
TACAAAGTGTGAGGTGGATG+TGG + chr1.1:57561546-57561565 MS.gene062234:intron 45.0%
TGAAATCGGCATAGGCGAAA+GGG - chr1.1:57560992-57561011 None:intergenic 45.0%
TGGCATAAAGGAACCAGACA+AGG - chr1.1:57564175-57564194 None:intergenic 45.0%
TTTAGAGGCCAAAATGGCAG+TGG - chr1.1:57562581-57562600 None:intergenic 45.0%
TTTCCAAGCAGAGAACTCTC+CGG - chr1.1:57561031-57561050 None:intergenic 45.0%
TTTGAAAGTCCACCTGTGCA+AGG + chr1.1:57561105-57561124 MS.gene062234:CDS 45.0%
! ACTCCAGAGTTTTACCTGCA+CGG - chr1.1:57564310-57564329 None:intergenic 45.0%
! CTTCGTCAATCGACTTCTTC+AGG + chr1.1:57563851-57563870 MS.gene062234:CDS 45.0%
! GCTAGTTTGTCGTGTAGAAC+TGG + chr1.1:57561730-57561749 MS.gene062234:intron 45.0%
! GTTGTGGGAAGTTTTCTTCC+TGG + chr1.1:57564411-57564430 MS.gene062234:CDS 45.0%
! TCCATGATAGCGATGCATAG+TGG + chr1.1:57562227-57562246 MS.gene062234:intron 45.0%
! TCGTCAATCGACTTCTTCAG+GGG + chr1.1:57563853-57563872 MS.gene062234:CDS 45.0%
! TGCAAGTGAACATGCTGACT+TGG + chr1.1:57562805-57562824 MS.gene062234:intron 45.0%
! TTTTCTTCCTGGTCACCATC+TGG + chr1.1:57564422-57564441 MS.gene062234:CDS 45.0%
!! AGGGGGTACTTTAACGTATG+AGG + chr1.1:57563871-57563890 MS.gene062234:CDS 45.0%
!! GAATGTAGTGGGTGGTAATG+AGG + chr1.1:57560807-57560826 MS.gene062234:CDS 45.0%
!! GCTGGTTTGCTTATAGCTTC+CGG + chr1.1:57564282-57564301 MS.gene062234:CDS 45.0%
!! TGCAGGTAAAACTCTGGAGT+AGG + chr1.1:57564310-57564329 MS.gene062234:intron 45.0%
!!! GCCATTTTGGCCTCTAAAGT+GGG + chr1.1:57562583-57562602 MS.gene062234:intron 45.0%
!!! TCTTGCTGTTTTGCTCCAGA+TGG - chr1.1:57564440-57564459 None:intergenic 45.0%
!!! TGCCATTTTGGCCTCTAAAG+TGG + chr1.1:57562582-57562601 MS.gene062234:intron 45.0%
AAACAGCAAGAAGCAGAGGG+TGG + chr1.1:57564449-57564468 MS.gene062234:CDS 50.0%
AGAAGAAGAGGGGAAGACCA+AGG + chr1.1:57560923-57560942 MS.gene062234:CDS 50.0%
AGGGGAAGACCAAGGAAGTA+TGG + chr1.1:57560931-57560950 MS.gene062234:CDS 50.0%
CTGCTTGGAAAAGGGGTAGA+GGG + chr1.1:57561040-57561059 MS.gene062234:CDS 50.0%
GCCACTATGCATCGCTATCA+TGG - chr1.1:57562231-57562250 None:intergenic 50.0%
GCTTACAGTGAATTCTGGCG+AGG + chr1.1:57563615-57563634 MS.gene062234:CDS 50.0%
GGTGAATGGAATTACAGGGG+CGG + chr1.1:57564136-57564155 MS.gene062234:intron 50.0%
GGTTGGCACTCTGTCTTTGA+AGG + chr1.1:57562875-57562894 MS.gene062234:intron 50.0%
TCTGCTTGGAAAAGGGGTAG+AGG + chr1.1:57561039-57561058 MS.gene062234:CDS 50.0%
TGAGCTTTCAAGCTGCTCCA+AGG + chr1.1:57560836-57560855 MS.gene062234:CDS 50.0%
TGGTGGGATGAGTGTCTCTT+TGG + chr1.1:57564224-57564243 MS.gene062234:CDS 50.0%
! CGTCAATCGACTTCTTCAGG+GGG + chr1.1:57563854-57563873 MS.gene062234:CDS 50.0%
! CTCCAGAGTTTTACCTGCAC+GGG - chr1.1:57564309-57564328 None:intergenic 50.0%
! GCCCACTTTAGAGGCCAAAA+TGG - chr1.1:57562587-57562606 None:intergenic 50.0%
! GGGGAAGACCAAGGAAGTAT+GGG + chr1.1:57560932-57560951 MS.gene062234:CDS 50.0%
! GTAGGTGGAGGTGTAAGTGA+GGG + chr1.1:57563553-57563572 MS.gene062234:CDS 50.0%
! TGTAGGTGGAGGTGTAAGTG+AGG + chr1.1:57563552-57563571 MS.gene062234:CDS 50.0%
! TTTTGCTCCAGATGGTGACC+AGG - chr1.1:57564432-57564451 None:intergenic 50.0%
! TTTTTCCATGGCAACGGTGC+CGG + chr1.1:57560876-57560895 MS.gene062234:CDS 50.0%
!! TCATCGTCGATTCCGTTGAC+CGG + chr1.1:57561009-57561028 MS.gene062234:CDS 50.0%
!! TGCTGGAACCACTGCCATTT+TGG + chr1.1:57562570-57562589 MS.gene062234:intron 50.0%
CACCCAATACTCGGCCATCT+GGG - chr1.1:57564254-57564273 None:intergenic 55.0%
CCATCTGGCCCATACTTCCT+TGG - chr1.1:57560943-57560962 None:intergenic 55.0%
CGAGTCCACCACCCAATACT+CGG - chr1.1:57564263-57564282 None:intergenic 55.0%
CGCTGTTGTGCCCACTTTAG+AGG - chr1.1:57562596-57562615 None:intergenic 55.0%
GCAGAGAACTCTCCGGTCAA+CGG - chr1.1:57561024-57561043 None:intergenic 55.0%
GGAGCAGCTTGAAAGCTCAC+AGG - chr1.1:57560835-57560854 None:intergenic 55.0%
GGGATGAGTGTCTCTTTGGC+AGG + chr1.1:57564228-57564247 MS.gene062234:CDS 55.0%
GTCCCGTGCAGGTAAAACTC+TGG + chr1.1:57564304-57564323 MS.gene062234:intron 55.0%
TGACCGGAGAGTTCTCTGCT+TGG + chr1.1:57561025-57561044 MS.gene062234:CDS 55.0%
TGCACGTGATCCTTGTTGGG+AGG - chr1.1:57563789-57563808 None:intergenic 55.0%
TTCCAATAGTGGCCAGTGGC+CGG + chr1.1:57562643-57562662 MS.gene062234:intron 55.0%
! CCAAGGAAGTATGGGCCAGA+TGG + chr1.1:57560940-57560959 MS.gene062234:CDS 55.0%
! GAGTTTTACCTGCACGGGAC+CGG - chr1.1:57564304-57564323 None:intergenic 55.0%
! GGAGCTGTGAATGTAGTGGG+TGG + chr1.1:57560799-57560818 MS.gene062234:CDS 55.0%
AGGCCCAGATGGCCGAGTAT+TGG + chr1.1:57564248-57564267 MS.gene062234:CDS 60.0%
CCACCCAATACTCGGCCATC+TGG - chr1.1:57564255-57564274 None:intergenic 60.0%
CCAGATGGTAAGCCTGCTCC+TGG + chr1.1:57560955-57560974 MS.gene062234:CDS 60.0%
CCAGGAGCAGGCTTACCATC+TGG - chr1.1:57560958-57560977 None:intergenic 60.0%
GAAAGGGCAGTCACAGCTCC+AGG - chr1.1:57560976-57560995 None:intergenic 60.0%
GGCCCAGATGGCCGAGTATT+GGG + chr1.1:57564249-57564268 MS.gene062234:CDS 60.0%
GTCTCTTTGGCAGGCCCAGA+TGG + chr1.1:57564237-57564256 MS.gene062234:CDS 60.0%
TATAGCTTCCGGTCCCGTGC+AGG + chr1.1:57564293-57564312 MS.gene062234:CDS 60.0%
TATTTAGGGGGTGGGGGGAG+TGG + chr1.1:57561491-57561510 MS.gene062234:intron 60.0%
TTTGTCCCTTCTCCGGCCAC+TGG - chr1.1:57562658-57562677 None:intergenic 60.0%
!! CCAGATGGCCGAGTATTGGG+TGG + chr1.1:57564252-57564271 MS.gene062234:CDS 60.0%
!! GATGGCCGAGTATTGGGTGG+TGG + chr1.1:57564255-57564274 MS.gene062234:CDS 60.0%
!! GTATTGGGTGGTGGACTCGC+TGG + chr1.1:57564264-57564283 MS.gene062234:CDS 60.0%
AGTGGCCAGTGGCCGGAGAA+GGG + chr1.1:57562650-57562669 MS.gene062234:intron 65.0%
CTCCGGCCACTGGCCACTAT+TGG - chr1.1:57562648-57562667 None:intergenic 65.0%
GCAGTCACAGCTCCAGGAGC+AGG - chr1.1:57560970-57560989 None:intergenic 65.0%
GCTGTCTCCGGCAACGACAC+CGG - chr1.1:57560898-57560917 None:intergenic 65.0%
TAGTGGCCAGTGGCCGGAGA+AGG + chr1.1:57562649-57562668 MS.gene062234:intron 65.0%
!! AACGGTGCCGGTGTCGTTGC+CGG + chr1.1:57560888-57560907 MS.gene062234:CDS 65.0%
CGACACCGGCACCGTTGCCA+TGG - chr1.1:57560884-57560903 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 57560778 57564707 57560778 ID=MS.gene062234
chr1.1 mRNA 57560778 57564707 57560778 ID=MS.gene062234.t1;Parent=MS.gene062234
chr1.1 exon 57560778 57561126 57560778 ID=MS.gene062234.t1.exon1;Parent=MS.gene062234.t1
chr1.1 CDS 57560778 57561126 57560778 ID=cds.MS.gene062234.t1;Parent=MS.gene062234.t1
chr1.1 exon 57563551 57563636 57563551 ID=MS.gene062234.t1.exon2;Parent=MS.gene062234.t1
chr1.1 CDS 57563551 57563636 57563551 ID=cds.MS.gene062234.t1;Parent=MS.gene062234.t1
chr1.1 exon 57563764 57563892 57563764 ID=MS.gene062234.t1.exon3;Parent=MS.gene062234.t1
chr1.1 CDS 57563764 57563892 57563764 ID=cds.MS.gene062234.t1;Parent=MS.gene062234.t1
chr1.1 exon 57564153 57564314 57564153 ID=MS.gene062234.t1.exon4;Parent=MS.gene062234.t1
chr1.1 CDS 57564153 57564314 57564153 ID=cds.MS.gene062234.t1;Parent=MS.gene062234.t1
chr1.1 exon 57564408 57564707 57564408 ID=MS.gene062234.t1.exon5;Parent=MS.gene062234.t1
chr1.1 CDS 57564408 57564707 57564408 ID=cds.MS.gene062234.t1;Parent=MS.gene062234.t1
Gene Sequence

>MS.gene062234

ATGGAAGAAAGAGAGAATTTTGGAGCTGTGAATGTAGTGGGTGGTAATGAGGTTCCTGTGAGCTTTCAAGCTGCTCCAAGGATTGATAACAACTTGGATTTTTCCATGGCAACGGTGCCGGTGTCGTTGCCGGAGACAGCTTTGAAGAAGAAGAGGGGAAGACCAAGGAAGTATGGGCCAGATGGTAAGCCTGCTCCTGGAGCTGTGACTGCCCTTTCGCCTATGCCGATTTCATCGTCGATTCCGTTGACCGGAGAGTTCTCTGCTTGGAAAAGGGGTAGAGGGAAGCCTGTTGAATCTATGAAGAAATCATCTTTTAAGTTTGATTTTGAAAGTCCACCTGTGCAAGGTATTATTTATAGCTCTTTGATCTTTGAAATGTTTTGAAGTTTTAATTTTAGTTAGTATTTGTGTTTATTTTCCTTTTTTTCTTATAATTTTCTTTGACTGTTACTTATGTTTCTGAGGTTTGGTTTTTACTGTTACATTTGCAGTTTTTGAGAAATGAGAGTGGAATTCATTATTATTCAGGAAAATAAACAGTGAAATTTATAATGAATCAATTAATCCTCTTGTTATTTTTTCAACATAATTGATTTTTGTTTTCATTTTAATTTTTGTTTTTTGAGTTCTAATTGTTATGGAGGTAGTTATTTTCTCTGATCTGTGTTTATAGTGTGAAATTTGTATTTTTGATTTTGTGATAGAGTTTATATTTAGGGGGTGGGGGGAGTGGACCCTTAGCTGAGATTCCTTTTCAGATCTGAATACAAAGTGTGAGGTGGATGTGGATATTTTTGTGGTTGAAAGTGAGGTTGTATTTGTTCTGTTTAGGGTAGCTTATGATGCTCCTTATTTTCCTTTATAAGAAGAAGAAAAGTATTGCATTATATGACAATGGAAATGGTTAGAGTAAATGAAGGGACCAACTAGAATGAGTCTAATAGTTATAGCTAGTTTGTCGTGTAGAACTGGTCTAAATCTAATCTAATAATAATAATTAATTTTAACATCTTACTAATCACCTTGTTGGTTGGTTTGAATAATAGGCTGCAAAATAGGAATTTCAGTCTGAAATATTTCCAAATTTTAACTTGTTCTTAATCATGGATATATTATTAAGAGCAATCTCCTAGGAACCCGATGATTAAGACAAAAATGTGATCTTCTTGTAAAAAATAGAGTGGTCTCTTAGAATGGTAGTATCCATCAGTATTTTAATCAAAGGCATTGATATATATTTTAAAGTTTGCAGAAGAGATTTTTGGTTGCATATAGTATAAGGTATGCTTGGATGAAGAGATTTATAGAACGTATTAGGTAGAAATTTCTGTGTGAAGAAGAGGACCAACAAAATGAGGGACTTTAATAAGATCATTTTAAAACGCTACCTTTGTTTTTTTTTAACATTCACATGTTCTGCCATTTTTTTGGCATAGTTATTATCAATCCATGATAGCGATGCATAGTGGCTGACCCTAAACATGCTATATTCAGAGAACGTATTCTGAATTTCATATACATATTAAATTAAATTATTAATAATACAATATATACAAATGCCAATAATTTACATAATACTTAAAATTTAACAAATACTCTTAAGTAACAATGATAAGTCATAGTTCTTCATCAAAACACGAGTAAATACCAAAAAACTCGTAAAACAAACAAGTTTAAGCATCTAAATGCTTAATGTAACTAAACATCAAAATTTGATGTTTATATCCCAATATTAGACGAATAAAACCCTAAAACATCCCTAATACCACATTTTTCTGAAACTTTTAGTTGCTGGAACCACTGCCATTTTGGCCTCTAAAGTGGGCACAACAGCGACAGAAGAAAACCGCTCTGCTACATACTTCCAATAGTGGCCAGTGGCCGGAGAAGGGACAAAGATCATTACTTAATACTGGCATTTTCTTCCCTTTTCTTTATCTTGCAACATCCAAGTAAGACGAATGCGGACATTGAATTGTGTGTTGTTTAACATGGTAGACAACATGCATATGTTACGTTTTGCATGCAAGTGAACATGCTGACTTGGCGACTTCTATATTTGAACAAGATCTGGGTTCTTTAATTGTTTAAGAGGGTTGGCACTCTGTCTTTGAAGGTTATGAATTAAGGCCTAGAAAGCCGTAAAGTATGGAACACAATTATTTATGGACTCGGTTATGTGGATACTGTTGTAATCGCTTCTGCACTATGTCATAGTATGTGGTTGTAAGTCAGAACTCTATAAGCAACATATAGAAGAGAAGACACTTAATTGTTTTGACTACACAATGTTGATCCAGGGCAGTAAAGAATCTTCTAAAATTAGGGCCATAATAGGGTGGCCAATTTACTGCCATGTATTGTTGCGATGTGTGAGGATGTTGAGTTTGCTGTCTAATTAAATACATGAATTGAGCTGGAGTTAAGACTTTCAAATATGGTTATTGAATTTTTCATCGTTCTAAAAGTTCTTTATGCTTAATTTGCTGTTTCTATTATTGAAGTCTCTTGGAAAATAAATCATTTTCCTTCAAATCTACCTCATCCTTTAAAAGATGGATCTGACCGAATGATACATAAGCTTCTTCTTTTCTTTATTTTTTATTTTATTTTTATATTTAATGGGTTGCTTTTATATAATGAATGAACTGGTTGTTGTTTTTATTTTTGTGAACTATAAAGGAAGTTCCTCTCTAGAATTTCTTTATTACATTCTTGCATTTCCTGTCTTTCTCCATCAATTGATCTTCCTTGTACGTATTTTATGTAGTTGTAGGTGGAGGTGTAAGTGAGGGAATTGCATACTCAGTAGGTGCCAACTTCACAGCTTATGTGCTTACAGTGAATTCTGGCGAGGTAATCTGTTCCTTTCCTTTTATCATATTTTATATGGTATGGATCAAGTGGTTGTAGTTTTTGAATTTCATTTTTGGTGTTCCACATGCTCATTTTAGCATTTATGATTTTCTATGCTCTGTCTCAGGATGTTACCATGAAAATTATGTCCTCCCAACAAGGATCACGTGCAATATGCATTCTCTCTGCCACTGGCACAATTTCAAATGTTACACTTCGTCAATCGACTTCTTCAGGGGGTACTTTAACGTATGAGGTGAGTTTAATCTTGTTCATCTACATAAAAAAAATAGAGTTCAGTCATTTGTTTCTCTATCATATTGGAATATGTACCATAAAGTCCTTCGTTTATATGCAGCCATGTCTGTCTTGTATTATATGTATTGACTCTACACATATCAAATATTAATTAATTTTGAGTTTCCCTTCTATGGAATCGACTCACTAACTCCATACTGAATCGGTGTTACATATATCTTTCAATTTCATTTATGCCCTTGGTGAATGGAATTACAGGGGCGGTTTGAGATTCTTTCCTTGTCTGGTTCCTTTATGCCAACTGAGAATGGAATTACAAGAAGCAGATCTGGTGGGATGAGTGTCTCTTTGGCAGGCCCAGATGGCCGAGTATTGGGTGGTGGACTCGCTGGTTTGCTTATAGCTTCCGGTCCCGTGCAGGTAAAACTCTGGAGTAGGTTTTATAAAAAAAAATGTTAGCAACACTCATTTAACACTCTCTTTCCAACACTCACTATGTTGTGCATTCATTAGGTCGTTGTGGGAAGTTTTCTTCCTGGTCACCATCTGGAGCAAAACAGCAAGAAGCAGAGGGTGGAGCATAATATATCAACTATTACACATAATAATCCTCCTCCACATGTTAATCATCATGTGTCTAATGAAGTAAGTTTTGGTGGAGTGAAGCCTTTTATGACACCTGCTGCATTTCATCAAGAAGAGAATATTGTTTCTTTCAACAACAATGCTCAAGACTCTAGGAACACCTCATCTGCTGAAGACAGAGATCCTTTACCTGAAAAGGACTCTAATCATAGTCAATCAACTACTTGA
Protein sequence

>MS.gene062234.t1

MEERENFGAVNVVGGNEVPVSFQAAPRIDNNLDFSMATVPVSLPETALKKKRGRPRKYGPDGKPAPGAVTALSPMPISSSIPLTGEFSAWKRGRGKPVESMKKSSFKFDFESPPVQVVGGGVSEGIAYSVGANFTAYVLTVNSGEDVTMKIMSSQQGSRAICILSATGTISNVTLRQSTSSGGTLTYEGRFEILSLSGSFMPTENGITRSRSGGMSVSLAGPDGRVLGGGLAGLLIASGPVQVVVGSFLPGHHLEQNSKKQRVEHNISTITHNNPPPHVNHHVSNEVSFGGVKPFMTPAAFHQEENIVSFNNNAQDSRNTSSAEDRDPLPEKDSNHSQSTT