Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062234.t1 | XP_013468783.1 | 99.1 | 341 | 2 | 1 | 1 | 341 | 1 | 340 | 3.10E-183 | 651 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062234.t1 | Q9SB31 | 64.2 | 226 | 71 | 5 | 34 | 256 | 71 | 289 | 2.5e-64 | 247.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062234.t1 | A0A072VXL7 | 99.1 | 341 | 2 | 1 | 1 | 341 | 1 | 340 | 2.2e-183 | 651.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050165 | MS.gene062234 | -0.814462 | 1.52E-51 | -1.69E-46 |
MS.gene050333 | MS.gene062234 | -0.804846 | 1.78E-49 | -1.69E-46 |
MS.gene050518 | MS.gene062234 | -0.800347 | 1.50E-48 | -1.69E-46 |
MS.gene050612 | MS.gene062234 | -0.819046 | 1.43E-52 | -1.69E-46 |
MS.gene055204 | MS.gene062234 | 0.806345 | 8.61E-50 | -1.69E-46 |
MS.gene055634 | MS.gene062234 | -0.816906 | 4.34E-52 | -1.69E-46 |
MS.gene059022 | MS.gene062234 | -0.801055 | 1.08E-48 | -1.69E-46 |
MS.gene059677 | MS.gene062234 | -0.805262 | 1.45E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062234.t1 | MTR_1g076710 | 99.120 | 341 | 2 | 1 | 1 | 341 | 1 | 340 | 0.0 | 680 |
MS.gene062234.t1 | MTR_6g061670 | 53.061 | 343 | 113 | 13 | 1 | 326 | 1 | 312 | 1.65e-89 | 271 |
MS.gene062234.t1 | MTR_6g061670 | 53.198 | 344 | 116 | 13 | 1 | 326 | 1 | 317 | 2.69e-89 | 271 |
MS.gene062234.t1 | MTR_7g074935 | 54.035 | 285 | 99 | 8 | 1 | 272 | 1 | 266 | 3.70e-75 | 235 |
MS.gene062234.t1 | MTR_4g101990 | 45.690 | 348 | 126 | 9 | 17 | 337 | 17 | 328 | 1.41e-63 | 205 |
MS.gene062234.t1 | MTR_8g036160 | 43.243 | 333 | 120 | 8 | 1 | 291 | 1 | 306 | 1.36e-59 | 196 |
MS.gene062234.t1 | MTR_1g061530 | 39.550 | 311 | 147 | 10 | 49 | 341 | 65 | 352 | 1.23e-50 | 172 |
MS.gene062234.t1 | MTR_5g011680 | 42.254 | 284 | 121 | 9 | 14 | 264 | 3 | 276 | 2.41e-46 | 159 |
MS.gene062234.t1 | MTR_8g031100 | 42.412 | 257 | 121 | 8 | 49 | 302 | 89 | 321 | 2.18e-43 | 153 |
MS.gene062234.t1 | MTR_7g077120 | 41.026 | 234 | 116 | 4 | 48 | 278 | 88 | 302 | 1.96e-42 | 150 |
MS.gene062234.t1 | MTR_5g010330 | 43.363 | 226 | 104 | 7 | 37 | 261 | 59 | 261 | 2.32e-42 | 149 |
MS.gene062234.t1 | MTR_6g060670 | 42.534 | 221 | 95 | 5 | 46 | 266 | 117 | 305 | 7.13e-40 | 142 |
MS.gene062234.t1 | MTR_5g011620 | 42.222 | 270 | 119 | 10 | 14 | 271 | 3 | 247 | 2.43e-38 | 145 |
MS.gene062234.t1 | MTR_8g098390 | 39.035 | 228 | 121 | 5 | 48 | 274 | 96 | 306 | 5.86e-36 | 133 |
MS.gene062234.t1 | MTR_4g098460 | 44.022 | 184 | 73 | 5 | 76 | 249 | 33 | 196 | 9.53e-32 | 120 |
MS.gene062234.t1 | MTR_5g011610 | 48.684 | 152 | 66 | 4 | 132 | 277 | 51 | 196 | 1.25e-30 | 119 |
MS.gene062234.t1 | MTR_5g011610 | 53.465 | 101 | 43 | 2 | 126 | 225 | 204 | 301 | 4.55e-21 | 92.4 |
MS.gene062234.t1 | MTR_4g055803 | 40.865 | 208 | 93 | 7 | 48 | 248 | 59 | 243 | 1.36e-30 | 120 |
MS.gene062234.t1 | MTR_4g055833 | 39.024 | 205 | 101 | 5 | 48 | 248 | 56 | 240 | 3.40e-30 | 118 |
MS.gene062234.t1 | MTR_4g098460 | 42.857 | 189 | 73 | 6 | 76 | 249 | 33 | 201 | 2.84e-29 | 114 |
MS.gene062234.t1 | MTR_1g079780 | 50.427 | 117 | 53 | 3 | 134 | 248 | 109 | 222 | 1.43e-27 | 110 |
MS.gene062234.t1 | MTR_1g038960 | 40.196 | 204 | 97 | 5 | 47 | 248 | 83 | 263 | 1.45e-27 | 110 |
MS.gene062234.t1 | MTR_7g116320 | 53.719 | 121 | 52 | 2 | 130 | 249 | 139 | 256 | 1.79e-27 | 110 |
MS.gene062234.t1 | MTR_4g055813 | 49.254 | 134 | 60 | 3 | 117 | 248 | 6 | 133 | 2.40e-27 | 108 |
MS.gene062234.t1 | MTR_7g116320 | 52.991 | 117 | 51 | 2 | 130 | 245 | 139 | 252 | 1.63e-25 | 103 |
MS.gene062234.t1 | MTR_5g014360 | 37.379 | 206 | 95 | 7 | 52 | 248 | 123 | 303 | 1.28e-24 | 103 |
MS.gene062234.t1 | MTR_3g100470 | 41.463 | 123 | 69 | 3 | 134 | 253 | 101 | 223 | 1.38e-23 | 99.0 |
MS.gene062234.t1 | MTR_5g013390 | 33.636 | 220 | 116 | 7 | 47 | 260 | 79 | 274 | 8.27e-21 | 92.0 |
MS.gene062234.t1 | MTR_4g055705 | 42.188 | 128 | 70 | 2 | 124 | 247 | 127 | 254 | 2.35e-20 | 90.1 |
MS.gene062234.t1 | MTR_1g038990 | 34.314 | 204 | 92 | 6 | 47 | 248 | 80 | 243 | 2.04e-19 | 87.8 |
MS.gene062234.t1 | MTR_3g116100 | 36.000 | 175 | 100 | 5 | 89 | 255 | 91 | 261 | 9.35e-19 | 86.3 |
MS.gene062234.t1 | MTR_5g091630 | 38.172 | 186 | 89 | 6 | 69 | 249 | 23 | 187 | 1.02e-18 | 84.7 |
MS.gene062234.t1 | MTR_5g041430 | 43.548 | 124 | 67 | 3 | 126 | 247 | 103 | 225 | 3.11e-18 | 84.3 |
MS.gene062234.t1 | MTR_3g068035 | 43.966 | 116 | 61 | 2 | 134 | 248 | 106 | 218 | 1.56e-17 | 82.4 |
MS.gene062234.t1 | MTR_5g066020 | 36.552 | 145 | 83 | 6 | 126 | 263 | 72 | 214 | 2.86e-17 | 80.5 |
MS.gene062234.t1 | MTR_3g023560 | 38.843 | 121 | 67 | 2 | 132 | 248 | 60 | 177 | 3.87e-17 | 80.5 |
MS.gene062234.t1 | MTR_5g011700 | 45.283 | 106 | 53 | 2 | 145 | 248 | 10 | 112 | 1.32e-16 | 77.4 |
MS.gene062234.t1 | MTR_5g011520 | 37.654 | 162 | 81 | 4 | 88 | 248 | 97 | 239 | 2.98e-16 | 79.0 |
MS.gene062234.t1 | MTR_7g080980 | 46.610 | 118 | 55 | 3 | 134 | 248 | 84 | 196 | 3.58e-16 | 77.8 |
MS.gene062234.t1 | MTR_4g098450 | 44.068 | 118 | 58 | 3 | 134 | 248 | 103 | 215 | 1.20e-15 | 76.6 |
MS.gene062234.t1 | MTR_1g044155 | 40.171 | 117 | 66 | 2 | 133 | 248 | 152 | 265 | 1.51e-15 | 77.0 |
MS.gene062234.t1 | MTR_8g036060 | 37.736 | 159 | 79 | 4 | 91 | 248 | 86 | 225 | 1.53e-15 | 76.6 |
MS.gene062234.t1 | MTR_5g080580 | 42.241 | 116 | 63 | 2 | 134 | 248 | 116 | 228 | 1.25e-14 | 73.9 |
MS.gene062234.t1 | MTR_1g073860 | 38.793 | 116 | 67 | 2 | 134 | 248 | 121 | 233 | 9.46e-14 | 71.6 |
MS.gene062234.t1 | MTR_1g079810 | 40.517 | 116 | 65 | 2 | 134 | 248 | 101 | 213 | 4.11e-13 | 69.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062234.t1 | AT4G25320 | 67.925 | 212 | 58 | 5 | 48 | 256 | 85 | 289 | 1.50e-84 | 261 |
MS.gene062234.t1 | AT5G62260 | 64.545 | 220 | 64 | 7 | 49 | 261 | 76 | 288 | 1.84e-83 | 258 |
MS.gene062234.t1 | AT5G62260 | 64.545 | 220 | 64 | 7 | 49 | 261 | 76 | 288 | 1.84e-83 | 258 |
MS.gene062234.t1 | AT5G62260 | 62.150 | 214 | 67 | 7 | 49 | 255 | 76 | 282 | 4.90e-77 | 238 |
MS.gene062234.t1 | AT4G12080 | 58.051 | 236 | 73 | 7 | 48 | 271 | 88 | 309 | 1.59e-75 | 236 |
MS.gene062234.t1 | AT5G51590 | 59.016 | 244 | 63 | 6 | 34 | 251 | 64 | 296 | 3.29e-71 | 228 |
MS.gene062234.t1 | AT4G22770 | 56.195 | 226 | 80 | 7 | 48 | 267 | 71 | 283 | 1.32e-58 | 192 |
MS.gene062234.t1 | AT4G22770 | 56.195 | 226 | 80 | 7 | 48 | 267 | 71 | 283 | 1.32e-58 | 192 |
MS.gene062234.t1 | AT4G00200 | 53.435 | 262 | 92 | 8 | 15 | 265 | 14 | 256 | 1.68e-56 | 186 |
MS.gene062234.t1 | AT4G00200 | 53.435 | 262 | 92 | 8 | 15 | 265 | 14 | 256 | 1.68e-56 | 186 |
MS.gene062234.t1 | AT2G33620 | 53.589 | 209 | 67 | 6 | 48 | 250 | 96 | 280 | 1.12e-52 | 177 |
MS.gene062234.t1 | AT2G33620 | 53.589 | 209 | 67 | 6 | 48 | 250 | 96 | 280 | 1.12e-52 | 177 |
MS.gene062234.t1 | AT2G33620 | 53.589 | 209 | 67 | 6 | 48 | 250 | 96 | 280 | 1.12e-52 | 177 |
MS.gene062234.t1 | AT2G33620 | 53.589 | 209 | 67 | 6 | 48 | 250 | 96 | 280 | 1.12e-52 | 177 |
MS.gene062234.t1 | AT2G45850 | 37.544 | 285 | 149 | 5 | 7 | 288 | 56 | 314 | 8.63e-45 | 157 |
MS.gene062234.t1 | AT2G45850 | 37.544 | 285 | 149 | 5 | 7 | 288 | 56 | 314 | 8.63e-45 | 157 |
MS.gene062234.t1 | AT1G63470 | 45.933 | 209 | 90 | 5 | 48 | 251 | 104 | 294 | 5.31e-44 | 155 |
MS.gene062234.t1 | AT2G45850 | 40.000 | 240 | 118 | 4 | 7 | 243 | 56 | 272 | 1.02e-40 | 144 |
MS.gene062234.t1 | AT4G17950 | 37.868 | 272 | 112 | 9 | 48 | 292 | 130 | 371 | 2.31e-39 | 144 |
MS.gene062234.t1 | AT3G61310 | 46.377 | 207 | 86 | 6 | 45 | 249 | 97 | 280 | 2.90e-39 | 142 |
MS.gene062234.t1 | AT5G46640 | 43.119 | 218 | 92 | 5 | 45 | 249 | 98 | 296 | 2.18e-37 | 138 |
MS.gene062234.t1 | AT1G63480 | 40.385 | 208 | 92 | 6 | 48 | 251 | 98 | 277 | 9.20e-35 | 130 |
MS.gene062234.t1 | AT1G63480 | 40.385 | 208 | 92 | 6 | 48 | 251 | 98 | 277 | 9.20e-35 | 130 |
MS.gene062234.t1 | AT1G63480 | 40.385 | 208 | 92 | 6 | 48 | 251 | 92 | 271 | 1.05e-34 | 130 |
MS.gene062234.t1 | AT1G63480 | 40.385 | 208 | 92 | 6 | 48 | 251 | 92 | 271 | 1.05e-34 | 130 |
MS.gene062234.t1 | AT1G63480 | 40.385 | 208 | 92 | 6 | 48 | 251 | 92 | 271 | 1.05e-34 | 130 |
MS.gene062234.t1 | AT1G63480 | 40.385 | 208 | 92 | 6 | 48 | 251 | 92 | 271 | 1.05e-34 | 130 |
MS.gene062234.t1 | AT1G63480 | 40.385 | 208 | 92 | 6 | 48 | 251 | 92 | 271 | 1.05e-34 | 130 |
MS.gene062234.t1 | AT3G04590 | 39.207 | 227 | 108 | 6 | 30 | 248 | 79 | 283 | 1.04e-32 | 124 |
MS.gene062234.t1 | AT3G04590 | 39.207 | 227 | 108 | 6 | 30 | 248 | 79 | 283 | 6.56e-32 | 124 |
MS.gene062234.t1 | AT2G36560 | 43.704 | 135 | 70 | 4 | 131 | 262 | 102 | 233 | 6.53e-24 | 102 |
MS.gene062234.t1 | AT5G49700 | 37.778 | 135 | 78 | 4 | 134 | 262 | 83 | 217 | 2.85e-20 | 89.4 |
MS.gene062234.t1 | AT2G42940 | 38.983 | 177 | 79 | 7 | 76 | 249 | 43 | 193 | 9.66e-19 | 84.7 |
MS.gene062234.t1 | AT1G14490 | 37.500 | 144 | 83 | 5 | 126 | 262 | 41 | 184 | 1.49e-17 | 80.9 |
MS.gene062234.t1 | AT1G14490 | 37.500 | 144 | 83 | 5 | 126 | 262 | 22 | 165 | 1.52e-17 | 80.5 |
MS.gene062234.t1 | AT3G60870 | 40.517 | 116 | 63 | 3 | 134 | 248 | 86 | 196 | 3.73e-17 | 80.5 |
MS.gene062234.t1 | AT4G14465 | 43.103 | 116 | 62 | 2 | 134 | 248 | 94 | 206 | 4.07e-16 | 77.8 |
MS.gene062234.t1 | AT2G35270 | 39.130 | 161 | 74 | 5 | 91 | 248 | 78 | 217 | 8.82e-16 | 77.0 |
MS.gene062234.t1 | AT3G55560 | 41.026 | 117 | 66 | 2 | 134 | 249 | 115 | 229 | 1.72e-14 | 73.6 |
MS.gene062234.t1 | AT1G76500 | 35.200 | 125 | 68 | 3 | 134 | 248 | 99 | 220 | 1.50e-13 | 70.9 |
MS.gene062234.t1 | AT4G17800 | 41.228 | 114 | 63 | 2 | 136 | 248 | 111 | 221 | 1.82e-13 | 70.5 |
MS.gene062234.t1 | AT3G04570 | 38.710 | 124 | 64 | 3 | 134 | 248 | 107 | 227 | 2.31e-12 | 67.4 |
MS.gene062234.t1 | AT5G28590 | 37.398 | 123 | 46 | 3 | 130 | 248 | 26 | 121 | 2.60e-12 | 65.9 |
MS.gene062234.t1 | AT4G12050 | 40.171 | 117 | 65 | 3 | 134 | 248 | 145 | 258 | 8.77e-12 | 65.9 |
MS.gene062234.t1 | AT4G22810 | 32.716 | 162 | 86 | 5 | 91 | 248 | 105 | 247 | 1.13e-11 | 65.5 |
MS.gene062234.t1 | AT2G45430 | 34.969 | 163 | 82 | 5 | 91 | 248 | 89 | 232 | 1.63e-11 | 64.7 |
MS.gene062234.t1 | AT4G35390 | 41.176 | 119 | 62 | 4 | 134 | 248 | 90 | 204 | 1.86e-11 | 64.3 |
Find 92 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGGAAGAAAGAGAGAATTT+TGG | 0.216956 | 1.1:+57560778 | MS.gene062234:CDS |
CTTCGTCAATCGACTTCTTC+AGG | 0.300773 | 1.1:+57563851 | MS.gene062234:CDS |
CCACCCAATACTCGGCCATC+TGG | 0.308208 | 1.1:-57564252 | None:intergenic |
TCCATTCTCAGTTGGCATAA+AGG | 0.318075 | 1.1:-57564184 | None:intergenic |
AGGGGAAGACCAAGGAAGTA+TGG | 0.321600 | 1.1:+57560931 | MS.gene062234:CDS |
AACGGTGCCGGTGTCGTTGC+CGG | 0.338330 | 1.1:+57560888 | MS.gene062234:CDS |
GGCCCAGATGGCCGAGTATT+GGG | 0.346491 | 1.1:+57564249 | MS.gene062234:CDS |
TTTGAGATTCTTTCCTTGTC+TGG | 0.357599 | 1.1:+57564159 | MS.gene062234:CDS |
AATGCAGCAGGTGTCATAAA+AGG | 0.358990 | 1.1:-57564561 | None:intergenic |
TATGTGCTTACAGTGAATTC+TGG | 0.363275 | 1.1:+57563610 | MS.gene062234:CDS |
TCCTTTATGCCAACTGAGAA+TGG | 0.367271 | 1.1:+57564183 | MS.gene062234:CDS |
TGGTGGGATGAGTGTCTCTT+TGG | 0.369450 | 1.1:+57564224 | MS.gene062234:CDS |
AGGCCCAGATGGCCGAGTAT+TGG | 0.385737 | 1.1:+57564248 | MS.gene062234:CDS |
GAGAGTTCTCTGCTTGGAAA+AGG | 0.400231 | 1.1:+57561031 | MS.gene062234:CDS |
CTTGTAATTCCATTCTCAGT+TGG | 0.403549 | 1.1:-57564192 | None:intergenic |
CCATCTGGCCCATACTTCCT+TGG | 0.404209 | 1.1:-57560940 | None:intergenic |
GTCTCTTTGGCAGGCCCAGA+TGG | 0.415568 | 1.1:+57564237 | MS.gene062234:CDS |
CAGAGATCCTTTACCTGAAA+AGG | 0.415604 | 1.1:+57564656 | MS.gene062234:CDS |
GCTGGTTTGCTTATAGCTTC+CGG | 0.419761 | 1.1:+57564282 | MS.gene062234:CDS |
TCCAAGTTGTTATCAATCCT+TGG | 0.429223 | 1.1:-57560853 | None:intergenic |
TTCTTCTTCAAAGCTGTCTC+CGG | 0.437794 | 1.1:-57560907 | None:intergenic |
AACGGAATCGACGATGAAAT+CGG | 0.438353 | 1.1:-57561003 | None:intergenic |
GAAAGGGCAGTCACAGCTCC+AGG | 0.442370 | 1.1:-57560973 | None:intergenic |
GATTTCTTCATAGATTCAAC+AGG | 0.446009 | 1.1:-57561066 | None:intergenic |
TTCGTCAATCGACTTCTTCA+GGG | 0.447507 | 1.1:+57563852 | MS.gene062234:CDS |
TGCATTCATTAGGTCGTTGT+GGG | 0.460179 | 1.1:+57564396 | MS.gene062234:intron |
GGAATTACAAGAAGCAGATC+TGG | 0.463594 | 1.1:+57564204 | MS.gene062234:CDS |
CCAGGAGCAGGCTTACCATC+TGG | 0.464856 | 1.1:-57560955 | None:intergenic |
CCAGATGGTAAGCCTGCTCC+TGG | 0.466966 | 1.1:+57560955 | MS.gene062234:CDS |
CACCCAATACTCGGCCATCT+GGG | 0.474541 | 1.1:-57564251 | None:intergenic |
GTGTCTAATGAAGTAAGTTT+TGG | 0.480216 | 1.1:+57564528 | MS.gene062234:CDS |
GCAGTCACAGCTCCAGGAGC+AGG | 0.481704 | 1.1:-57560967 | None:intergenic |
GTATTGGGTGGTGGACTCGC+TGG | 0.482204 | 1.1:+57564264 | MS.gene062234:CDS |
TATTGCACGTGATCCTTGTT+GGG | 0.485487 | 1.1:-57563789 | None:intergenic |
CGACACCGGCACCGTTGCCA+TGG | 0.488569 | 1.1:-57560881 | None:intergenic |
GGGATGAGTGTCTCTTTGGC+AGG | 0.488739 | 1.1:+57564228 | MS.gene062234:CDS |
AGAGTTCTCTGCTTGGAAAA+GGG | 0.491659 | 1.1:+57561032 | MS.gene062234:CDS |
CGAGTCCACCACCCAATACT+CGG | 0.505760 | 1.1:-57564260 | None:intergenic |
TCTTCTTGATGAAATGCAGC+AGG | 0.509824 | 1.1:-57564573 | None:intergenic |
AGCAAAACAGCAAGAAGCAG+AGG | 0.510263 | 1.1:+57564445 | MS.gene062234:CDS |
ATCTCTGTCTTCAGCAGATG+AGG | 0.527702 | 1.1:-57564640 | None:intergenic |
TCATCGTCGATTCCGTTGAC+CGG | 0.533342 | 1.1:+57561009 | MS.gene062234:CDS |
ACAACAATGCTCAAGACTCT+AGG | 0.534120 | 1.1:+57564613 | MS.gene062234:CDS |
ATATTGCACGTGATCCTTGT+TGG | 0.537010 | 1.1:-57563790 | None:intergenic |
TATAGCTTCCGGTCCCGTGC+AGG | 0.538508 | 1.1:+57564293 | MS.gene062234:CDS |
ATATGCATTCTCTCTGCCAC+TGG | 0.540565 | 1.1:+57563809 | MS.gene062234:CDS |
TTTGGAGCTGTGAATGTAGT+GGG | 0.544951 | 1.1:+57560796 | MS.gene062234:CDS |
GATGGCCGAGTATTGGGTGG+TGG | 0.550417 | 1.1:+57564255 | MS.gene062234:CDS |
TCTGCTTGGAAAAGGGGTAG+AGG | 0.550814 | 1.1:+57561039 | MS.gene062234:CDS |
GTGCATTCATTAGGTCGTTG+TGG | 0.552620 | 1.1:+57564395 | MS.gene062234:intron |
ATGAAATCGGCATAGGCGAA+AGG | 0.554540 | 1.1:-57560990 | None:intergenic |
TGAAATCGGCATAGGCGAAA+GGG | 0.554696 | 1.1:-57560989 | None:intergenic |
CCAAGGAAGTATGGGCCAGA+TGG | 0.554974 | 1.1:+57560940 | MS.gene062234:CDS |
TCCAAGGATTGATAACAACT+TGG | 0.557972 | 1.1:+57560852 | MS.gene062234:CDS |
GCTGTCTCCGGCAACGACAC+CGG | 0.564357 | 1.1:-57560895 | None:intergenic |
GGGGAAGACCAAGGAAGTAT+GGG | 0.568941 | 1.1:+57560932 | MS.gene062234:CDS |
AGACAGCTTTGAAGAAGAAG+AGG | 0.569402 | 1.1:+57560911 | MS.gene062234:CDS |
CTGCTTGGAAAAGGGGTAGA+GGG | 0.570135 | 1.1:+57561040 | MS.gene062234:CDS |
TGAGCTTTCAAGCTGCTCCA+AGG | 0.570496 | 1.1:+57560836 | MS.gene062234:CDS |
GACAGCTTTGAAGAAGAAGA+GGG | 0.570605 | 1.1:+57560912 | MS.gene062234:CDS |
AAGCACATAAGCTGTGAAGT+TGG | 0.573504 | 1.1:-57563596 | None:intergenic |
GAGGGAATTGCATACTCAGT+AGG | 0.575333 | 1.1:+57563571 | MS.gene062234:CDS |
GTAGGTGGAGGTGTAAGTGA+GGG | 0.576701 | 1.1:+57563553 | MS.gene062234:CDS |
TGACCGGAGAGTTCTCTGCT+TGG | 0.577376 | 1.1:+57561025 | MS.gene062234:CDS |
GCAGAGAACTCTCCGGTCAA+CGG | 0.579815 | 1.1:-57561021 | None:intergenic |
GAGTTCTCTGCTTGGAAAAG+GGG | 0.582449 | 1.1:+57561033 | MS.gene062234:CDS |
TGTAGGTGGAGGTGTAAGTG+AGG | 0.583447 | 1.1:+57563552 | MS.gene062234:CDS |
TTTCCAAGCAGAGAACTCTC+CGG | 0.583652 | 1.1:-57561028 | None:intergenic |
TGATGATTAACATGTGGAGG+AGG | 0.584845 | 1.1:-57564504 | None:intergenic |
TAAATAATACCTTGCACAGG+TGG | 0.587655 | 1.1:-57561114 | None:intergenic |
TTTGAAAGTCCACCTGTGCA+AGG | 0.595210 | 1.1:+57561105 | MS.gene062234:CDS |
GGAGCAGCTTGAAAGCTCAC+AGG | 0.597686 | 1.1:-57560832 | None:intergenic |
AAACAGCAAGAAGCAGAGGG+TGG | 0.602793 | 1.1:+57564449 | MS.gene062234:CDS |
GAATGTAGTGGGTGGTAATG+AGG | 0.604474 | 1.1:+57560807 | MS.gene062234:CDS |
TGGCATAAAGGAACCAGACA+AGG | 0.611075 | 1.1:-57564172 | None:intergenic |
TCGTCAATCGACTTCTTCAG+GGG | 0.612115 | 1.1:+57563853 | MS.gene062234:CDS |
AAAATTATGTCCTCCCAACA+AGG | 0.612526 | 1.1:+57563776 | MS.gene062234:CDS |
TGCACGTGATCCTTGTTGGG+AGG | 0.616462 | 1.1:-57563786 | None:intergenic |
CTATAAATAATACCTTGCAC+AGG | 0.627082 | 1.1:-57561117 | None:intergenic |
ATTACAAGAAGCAGATCTGG+TGG | 0.630094 | 1.1:+57564207 | MS.gene062234:CDS |
GCAAAACAGCAAGAAGCAGA+GGG | 0.637562 | 1.1:+57564446 | MS.gene062234:CDS |
AACATTTGAAATTGTGCCAG+TGG | 0.637698 | 1.1:-57563825 | None:intergenic |
ACATGATGATTAACATGTGG+AGG | 0.639570 | 1.1:-57564507 | None:intergenic |
CCAGATGGCCGAGTATTGGG+TGG | 0.641351 | 1.1:+57564252 | MS.gene062234:CDS |
GACACATGATGATTAACATG+TGG | 0.651610 | 1.1:-57564510 | None:intergenic |
ATCGACGATGAAATCGGCAT+AGG | 0.666533 | 1.1:-57560997 | None:intergenic |
TTACAAGAAGCAGATCTGGT+GGG | 0.675023 | 1.1:+57564208 | MS.gene062234:CDS |
AGAAGAAGAGGGGAAGACCA+AGG | 0.680559 | 1.1:+57560923 | MS.gene062234:CDS |
GGAGCTGTGAATGTAGTGGG+TGG | 0.692986 | 1.1:+57560799 | MS.gene062234:CDS |
GCTTACAGTGAATTCTGGCG+AGG | 0.694276 | 1.1:+57563615 | MS.gene062234:CDS |
ACAGCTTTGAAGAAGAAGAG+GGG | 0.698390 | 1.1:+57560913 | MS.gene062234:CDS |
CGTCAATCGACTTCTTCAGG+GGG | 0.699414 | 1.1:+57563854 | MS.gene062234:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTATTTTTATATTTAAT+GGG | + | chr1.1:57563384-57563403 | MS.gene062234:intron | 0.0% |
!!! | TATTTTATTTTTATATTTAA+TGG | + | chr1.1:57563383-57563402 | MS.gene062234:intron | 0.0% |
!! | AAGAAAATTATAAGAAAAAA+AGG | - | chr1.1:57561202-57561221 | None:intergenic | 10.0% |
!! | TTAAGTATTATGTAAATTAT+TGG | - | chr1.1:57562343-57562362 | None:intergenic | 10.0% |
!! | ACCATATAAAATATGATAAA+AGG | - | chr1.1:57563655-57563674 | None:intergenic | 15.0% |
!! | ATAAAATATGATAAAAGGAA+AGG | - | chr1.1:57563650-57563669 | None:intergenic | 15.0% |
!! | ATTAAGAACAAGTTAAAATT+TGG | - | chr1.1:57561863-57561882 | None:intergenic | 15.0% |
!! | TGAATGTTAAAAAAAAACAA+AGG | - | chr1.1:57562171-57562190 | None:intergenic | 15.0% |
!!! | TAAAGAATCTTCTAAAATTA+GGG | + | chr1.1:57563086-57563105 | MS.gene062234:intron | 15.0% |
!!! | TAGTTTTTGAATTTCATTTT+TGG | + | chr1.1:57563691-57563710 | MS.gene062234:intron | 15.0% |
!!! | TCCTTTTATCATATTTTATA+TGG | + | chr1.1:57563651-57563670 | MS.gene062234:intron | 15.0% |
!!! | TTATCATATTTTATATGGTA+TGG | + | chr1.1:57563656-57563675 | MS.gene062234:intron | 15.0% |
!!! | TTTATTTTTGTGAACTATAA+AGG | + | chr1.1:57563441-57563460 | MS.gene062234:intron | 15.0% |
!! | TAATAACTATGCCAAAAAAA+TGG | - | chr1.1:57562203-57562222 | None:intergenic | 20.0% |
!! | TATGTTGAAAAAATAACAAG+AGG | - | chr1.1:57561349-57561368 | None:intergenic | 20.0% |
!! | TCTTCTTATAAAGGAAAATA+AGG | - | chr1.1:57561631-57561650 | None:intergenic | 20.0% |
!! | TGTGATAGAGTTTATATTTA+GGG | + | chr1.1:57561477-57561496 | MS.gene062234:intron | 20.0% |
!! | TTGTGATAGAGTTTATATTT+AGG | + | chr1.1:57561476-57561495 | MS.gene062234:intron | 20.0% |
!!! | CTTTTATATAATGAATGAAC+TGG | + | chr1.1:57563410-57563429 | MS.gene062234:intron | 20.0% |
!!! | GTAAAGAATCTTCTAAAATT+AGG | + | chr1.1:57563085-57563104 | MS.gene062234:intron | 20.0% |
!!! | TACTTTTCTTCTTCTTATAA+AGG | - | chr1.1:57561640-57561659 | None:intergenic | 20.0% |
!!! | TTTTAACTTGTTCTTAATCA+TGG | + | chr1.1:57561865-57561884 | MS.gene062234:intron | 20.0% |
!!! | TTTTTGAGTTCTAATTGTTA+TGG | + | chr1.1:57561399-57561418 | MS.gene062234:intron | 20.0% |
! | AAATGGTTAGAGTAAATGAA+GGG | + | chr1.1:57561679-57561698 | MS.gene062234:intron | 25.0% |
! | AACACAATTATTTATGGACT+CGG | + | chr1.1:57562933-57562952 | MS.gene062234:intron | 25.0% |
! | AACTACATAAAATACGTACA+AGG | - | chr1.1:57563533-57563552 | None:intergenic | 25.0% |
! | AGAGATTTATAGAACGTATT+AGG | + | chr1.1:57562076-57562095 | MS.gene062234:intron | 25.0% |
! | AGTATTGCATTATATGACAA+TGG | + | chr1.1:57561656-57561675 | MS.gene062234:intron | 25.0% |
! | AGTGGAATTCATTATTATTC+AGG | + | chr1.1:57561287-57561306 | MS.gene062234:intron | 25.0% |
! | ATGTTGCAAGATAAAGAAAA+GGG | - | chr1.1:57562709-57562728 | None:intergenic | 25.0% |
! | ATTAAATACATGAATTGAGC+TGG | + | chr1.1:57563178-57563197 | MS.gene062234:intron | 25.0% |
! | CAAAGATCATTACTTAATAC+TGG | + | chr1.1:57562674-57562693 | MS.gene062234:intron | 25.0% |
! | CTAAAAGTTTCAGAAAAATG+TGG | - | chr1.1:57562549-57562568 | None:intergenic | 25.0% |
! | GGTTCTTTAATTGTTTAAGA+GGG | + | chr1.1:57562854-57562873 | MS.gene062234:intron | 25.0% |
! | GTATGGAACACAATTATTTA+TGG | + | chr1.1:57562927-57562946 | MS.gene062234:intron | 25.0% |
! | GTGATAGAGTTTATATTTAG+GGG | + | chr1.1:57561478-57561497 | MS.gene062234:intron | 25.0% |
! | TAATTGTGTTCCATACTTTA+CGG | - | chr1.1:57562923-57562942 | None:intergenic | 25.0% |
! | TCTATATTTGAACAAGATCT+GGG | + | chr1.1:57562833-57562852 | MS.gene062234:intron | 25.0% |
! | TCTTCTTGTAAAAAATAGAG+TGG | + | chr1.1:57561942-57561961 | MS.gene062234:intron | 25.0% |
! | TGATAGAGTTTATATTTAGG+GGG | + | chr1.1:57561479-57561498 | MS.gene062234:intron | 25.0% |
! | TTCAGAAAAATGTGGTATTA+GGG | - | chr1.1:57562541-57562560 | None:intergenic | 25.0% |
! | TTCTATATTTGAACAAGATC+TGG | + | chr1.1:57562832-57562851 | MS.gene062234:intron | 25.0% |
! | TTTCAGAAAAATGTGGTATT+AGG | - | chr1.1:57562542-57562561 | None:intergenic | 25.0% |
! | TTTCTATTATTGAAGTCTCT+TGG | + | chr1.1:57563270-57563289 | MS.gene062234:intron | 25.0% |
!! | ACATTTTTGTCTTAATCATC+GGG | - | chr1.1:57561920-57561939 | None:intergenic | 25.0% |
!! | CACATTTTTGTCTTAATCAT+CGG | - | chr1.1:57561921-57561940 | None:intergenic | 25.0% |
!! | CATTTGTTTCTCTATCATAT+TGG | + | chr1.1:57563938-57563957 | MS.gene062234:intron | 25.0% |
!! | GTAATAAAGAAATTCTAGAG+AGG | - | chr1.1:57563472-57563491 | None:intergenic | 25.0% |
!! | TACGTATTTTATGTAGTTGT+AGG | + | chr1.1:57563535-57563554 | MS.gene062234:intron | 25.0% |
!! | TCTTTGAAGGTTATGAATTA+AGG | + | chr1.1:57562888-57562907 | MS.gene062234:intron | 25.0% |
!!! | GGTTTTATTCGTCTAATATT+GGG | - | chr1.1:57562509-57562528 | None:intergenic | 25.0% |
!!! | TCCATCAGTATTTTAATCAA+AGG | + | chr1.1:57561983-57562002 | MS.gene062234:intron | 25.0% |
!!! | TGTTTGTTTTACGAGTTTTT+TGG | - | chr1.1:57562431-57562450 | None:intergenic | 25.0% |
!!! | TTTTGGTTGCATATAGTATA+AGG | + | chr1.1:57562040-57562059 | MS.gene062234:intron | 25.0% |
AACAATACATGGCAGTAAAT+TGG | - | chr1.1:57563126-57563145 | None:intergenic | 30.0% | |
ACTATTAGACTCATTCTAGT+TGG | - | chr1.1:57561706-57561725 | None:intergenic | 30.0% | |
AGGTTGTATTTGTTCTGTTT+AGG | + | chr1.1:57561590-57561609 | MS.gene062234:intron | 30.0% | |
ATTATTAAGAGCAATCTCCT+AGG | + | chr1.1:57561892-57561911 | MS.gene062234:intron | 30.0% | |
ATTATTCAAACCAACCAACA+AGG | - | chr1.1:57561805-57561824 | None:intergenic | 30.0% | |
CATATAAACGAAGGACTTTA+TGG | - | chr1.1:57563972-57563991 | None:intergenic | 30.0% | |
CATATAATACAAGACAGACA+TGG | - | chr1.1:57563998-57564017 | None:intergenic | 30.0% | |
CATATAGTATAAGGTATGCT+TGG | + | chr1.1:57562049-57562068 | MS.gene062234:intron | 30.0% | |
CTAAAATTAGGGCCATAATA+GGG | + | chr1.1:57563097-57563116 | MS.gene062234:intron | 30.0% | |
CTATAAATAATACCTTGCAC+AGG | - | chr1.1:57561120-57561139 | None:intergenic | 30.0% | |
CTCTGAATATAGCATGTTTA+GGG | - | chr1.1:57562257-57562276 | None:intergenic | 30.0% | |
CTTTAATTGTTTAAGAGGGT+TGG | + | chr1.1:57562858-57562877 | MS.gene062234:intron | 30.0% | |
CTTTGTATTCAGATCTGAAA+AGG | - | chr1.1:57561533-57561552 | None:intergenic | 30.0% | |
GAAATGGTTAGAGTAAATGA+AGG | + | chr1.1:57561678-57561697 | MS.gene062234:intron | 30.0% | |
GAAGAAGCTTATGTATCATT+CGG | - | chr1.1:57563349-57563368 | None:intergenic | 30.0% | |
GATGTTGCAAGATAAAGAAA+AGG | - | chr1.1:57562710-57562729 | None:intergenic | 30.0% | |
GATTTCTTCATAGATTCAAC+AGG | - | chr1.1:57561069-57561088 | None:intergenic | 30.0% | |
GCATTATATGACAATGGAAA+TGG | + | chr1.1:57561662-57561681 | MS.gene062234:intron | 30.0% | |
GCCTTTGATTAAAATACTGA+TGG | - | chr1.1:57561987-57562006 | None:intergenic | 30.0% | |
GGAGTTAAGACTTTCAAATA+TGG | + | chr1.1:57563199-57563218 | MS.gene062234:intron | 30.0% | |
GGGTTCTTTAATTGTTTAAG+AGG | + | chr1.1:57562853-57562872 | MS.gene062234:intron | 30.0% | |
GGTTGTATTTGTTCTGTTTA+GGG | + | chr1.1:57561591-57561610 | MS.gene062234:intron | 30.0% | |
TAAATGCTAAAATGAGCATG+TGG | - | chr1.1:57563721-57563740 | None:intergenic | 30.0% | |
TCTCTGAATATAGCATGTTT+AGG | - | chr1.1:57562258-57562277 | None:intergenic | 30.0% | |
TGAATAATAGGCTGCAAAAT+AGG | + | chr1.1:57561817-57561836 | MS.gene062234:intron | 30.0% | |
TTCAATTTCATTTATGCCCT+TGG | + | chr1.1:57564115-57564134 | MS.gene062234:intron | 30.0% | |
TTTATATGGTATGGATCAAG+TGG | + | chr1.1:57563665-57563684 | MS.gene062234:intron | 30.0% | |
! | AAGTTTGCAGAAGAGATTTT+TGG | + | chr1.1:57562023-57562042 | MS.gene062234:intron | 30.0% |
! | ATGGAAGAAAGAGAGAATTT+TGG | + | chr1.1:57560778-57560797 | MS.gene062234:CDS | 30.0% |
! | ATTAAAGTCCCTCATTTTGT+TGG | - | chr1.1:57562128-57562147 | None:intergenic | 30.0% |
! | GTATTTTATGTAGTTGTAGG+TGG | + | chr1.1:57563538-57563557 | MS.gene062234:intron | 30.0% |
! | GTGTCTAATGAAGTAAGTTT+TGG | + | chr1.1:57564528-57564547 | MS.gene062234:CDS | 30.0% |
! | TAACAACTTGGATTTTTCCA+TGG | + | chr1.1:57560864-57560883 | MS.gene062234:CDS | 30.0% |
! | TCTAAAATTAGGGCCATAAT+AGG | + | chr1.1:57563096-57563115 | MS.gene062234:intron | 30.0% |
! | TTGAGTTCTAATTGTTATGG+AGG | + | chr1.1:57561402-57561421 | MS.gene062234:intron | 30.0% |
!! | GAATTGTGTGTTGTTTAACA+TGG | + | chr1.1:57562753-57562772 | MS.gene062234:intron | 30.0% |
!! | TATTTTTGTGGTTGAAAGTG+AGG | + | chr1.1:57561570-57561589 | MS.gene062234:intron | 30.0% |
!! | TCTAATGAAGTAAGTTTTGG+TGG | + | chr1.1:57564531-57564550 | MS.gene062234:CDS | 30.0% |
!! | TGTTGGTTGGTTTGAATAAT+AGG | + | chr1.1:57561805-57561824 | MS.gene062234:intron | 30.0% |
!! | TTACTTATGTTTCTGAGGTT+TGG | + | chr1.1:57561228-57561247 | MS.gene062234:intron | 30.0% |
!!! | AATTTTGAGTTTCCCTTCTA+TGG | + | chr1.1:57564048-57564067 | MS.gene062234:intron | 30.0% |
!!! | GGGTTTTATTCGTCTAATAT+TGG | - | chr1.1:57562510-57562529 | None:intergenic | 30.0% |
!!! | TTTCTGAAACTTTTAGTTGC+TGG | + | chr1.1:57562553-57562572 | MS.gene062234:intron | 30.0% |
AAAATTATGTCCTCCCAACA+AGG | + | chr1.1:57563776-57563795 | MS.gene062234:CDS | 35.0% | |
AAAGGATGAGGTAGATTTGA+AGG | - | chr1.1:57563311-57563330 | None:intergenic | 35.0% | |
AATAGAGTGGTCTCTTAGAA+TGG | + | chr1.1:57561955-57561974 | MS.gene062234:intron | 35.0% | |
ACATGATGATTAACATGTGG+AGG | - | chr1.1:57564510-57564529 | None:intergenic | 35.0% | |
AGAGTTTATATTTAGGGGGT+GGG | + | chr1.1:57561483-57561502 | MS.gene062234:intron | 35.0% | |
AGATCTGAATACAAAGTGTG+AGG | + | chr1.1:57561537-57561556 | MS.gene062234:intron | 35.0% | |
ATCAATTGATGGAGAAAGAC+AGG | - | chr1.1:57563507-57563526 | None:intergenic | 35.0% | |
CACTATGTTGTGCATTCATT+AGG | + | chr1.1:57564386-57564405 | MS.gene062234:intron | 35.0% | |
CATCTTACTAATCACCTTGT+TGG | + | chr1.1:57561788-57561807 | MS.gene062234:intron | 35.0% | |
CTTGTAATTCCATTCTCAGT+TGG | - | chr1.1:57564195-57564214 | None:intergenic | 35.0% | |
GAAATTTCTGTGTGAAGAAG+AGG | + | chr1.1:57562101-57562120 | MS.gene062234:intron | 35.0% | |
GACACATGATGATTAACATG+TGG | - | chr1.1:57564513-57564532 | None:intergenic | 35.0% | |
GTACAAGGAAGATCAATTGA+TGG | - | chr1.1:57563518-57563537 | None:intergenic | 35.0% | |
TAAATAATACCTTGCACAGG+TGG | - | chr1.1:57561117-57561136 | None:intergenic | 35.0% | |
TAGAGTTTATATTTAGGGGG+TGG | + | chr1.1:57561482-57561501 | MS.gene062234:intron | 35.0% | |
TATGTGCTTACAGTGAATTC+TGG | + | chr1.1:57563610-57563629 | MS.gene062234:CDS | 35.0% | |
TCACTAACTCCATACTGAAT+CGG | + | chr1.1:57564078-57564097 | MS.gene062234:intron | 35.0% | |
TCCAAGTTGTTATCAATCCT+TGG | - | chr1.1:57560856-57560875 | None:intergenic | 35.0% | |
TGAAAAGGAATCTCAGCTAA+GGG | - | chr1.1:57561518-57561537 | None:intergenic | 35.0% | |
TTACTAATCACCTTGTTGGT+TGG | + | chr1.1:57561792-57561811 | MS.gene062234:intron | 35.0% | |
! | AACATTTGAAATTGTGCCAG+TGG | - | chr1.1:57563828-57563847 | None:intergenic | 35.0% |
! | CTACCTCATCCTTTAAAAGA+TGG | + | chr1.1:57563317-57563336 | MS.gene062234:intron | 35.0% |
! | CTATGATTAGAGTCCTTTTC+AGG | - | chr1.1:57564672-57564691 | None:intergenic | 35.0% |
! | GACTGTTACTTATGTTTCTG+AGG | + | chr1.1:57561223-57561242 | MS.gene062234:intron | 35.0% |
! | GTGGTATTAGGGATGTTTTA+GGG | - | chr1.1:57562530-57562549 | None:intergenic | 35.0% |
! | TATTTATGGACTCGGTTATG+TGG | + | chr1.1:57562941-57562960 | MS.gene062234:intron | 35.0% |
! | TCCAAGGATTGATAACAACT+TGG | + | chr1.1:57560852-57560871 | MS.gene062234:CDS | 35.0% |
! | TGTGGTATTAGGGATGTTTT+AGG | - | chr1.1:57562531-57562550 | None:intergenic | 35.0% |
! | TTGGGAGGACATAATTTTCA+TGG | - | chr1.1:57563774-57563793 | None:intergenic | 35.0% |
! | TTTGAGATTCTTTCCTTGTC+TGG | + | chr1.1:57564159-57564178 | MS.gene062234:CDS | 35.0% |
! | TTTTATGTAGTTGTAGGTGG+AGG | + | chr1.1:57563541-57563560 | MS.gene062234:intron | 35.0% |
!! | CAGTTTTTGAGAAATGAGAG+TGG | + | chr1.1:57561269-57561288 | MS.gene062234:intron | 35.0% |
!! | GATCCATCTTTTAAAGGATG+AGG | - | chr1.1:57563323-57563342 | None:intergenic | 35.0% |
!! | TATGTAACACCGATTCAGTA+TGG | - | chr1.1:57564090-57564109 | None:intergenic | 35.0% |
!!! | CACATGTTCTGCCATTTTTT+TGG | + | chr1.1:57562189-57562208 | MS.gene062234:intron | 35.0% |
!!! | TTAGAGTCCTTTTCAGGTAA+AGG | - | chr1.1:57564666-57564685 | None:intergenic | 35.0% |
AAATTAGGGCCATAATAGGG+TGG | + | chr1.1:57563100-57563119 | MS.gene062234:intron | 40.0% | |
AACGGAATCGACGATGAAAT+CGG | - | chr1.1:57561006-57561025 | None:intergenic | 40.0% | |
AAGCACATAAGCTGTGAAGT+TGG | - | chr1.1:57563599-57563618 | None:intergenic | 40.0% | |
AATGATCTTTGTCCCTTCTC+CGG | - | chr1.1:57562665-57562684 | None:intergenic | 40.0% | |
ACAACAATGCTCAAGACTCT+AGG | + | chr1.1:57564613-57564632 | MS.gene062234:CDS | 40.0% | |
ACATCCAAGTAAGACGAATG+CGG | + | chr1.1:57562725-57562744 | MS.gene062234:intron | 40.0% | |
ACATGGCTGCATATAAACGA+AGG | - | chr1.1:57563981-57564000 | None:intergenic | 40.0% | |
AGAAGAGGACCAACAAAATG+AGG | + | chr1.1:57562116-57562135 | MS.gene062234:intron | 40.0% | |
AGAGTTCTCTGCTTGGAAAA+GGG | + | chr1.1:57561032-57561051 | MS.gene062234:CDS | 40.0% | |
AGTTTATATTTAGGGGGTGG+GGG | + | chr1.1:57561485-57561504 | MS.gene062234:intron | 40.0% | |
ATATTGCACGTGATCCTTGT+TGG | - | chr1.1:57563793-57563812 | None:intergenic | 40.0% | |
ATGCACAACATAGTGAGTGT+TGG | - | chr1.1:57564381-57564400 | None:intergenic | 40.0% | |
ATGTATTGTTGCGATGTGTG+AGG | + | chr1.1:57563136-57563155 | MS.gene062234:intron | 40.0% | |
ATTACAAGAAGCAGATCTGG+TGG | + | chr1.1:57564207-57564226 | MS.gene062234:CDS | 40.0% | |
CAGAGATCCTTTACCTGAAA+AGG | + | chr1.1:57564656-57564675 | MS.gene062234:CDS | 40.0% | |
CCTGTAATTCCATTCACCAA+GGG | - | chr1.1:57564134-57564153 | None:intergenic | 40.0% | |
CCTTGGTGAATGGAATTACA+GGG | + | chr1.1:57564132-57564151 | MS.gene062234:intron | 40.0% | |
CTGAAAAGGAATCTCAGCTA+AGG | - | chr1.1:57561519-57561538 | None:intergenic | 40.0% | |
CTGCACTATGTCATAGTATG+TGG | + | chr1.1:57562982-57563001 | MS.gene062234:intron | 40.0% | |
CTGCTACATACTTCCAATAG+TGG | + | chr1.1:57562632-57562651 | MS.gene062234:intron | 40.0% | |
CTTGGTGAATGGAATTACAG+GGG | + | chr1.1:57564133-57564152 | MS.gene062234:intron | 40.0% | |
GAAGAGGACCAACAAAATGA+GGG | + | chr1.1:57562117-57562136 | MS.gene062234:intron | 40.0% | |
GACTACACAATGTTGATCCA+GGG | + | chr1.1:57563060-57563079 | MS.gene062234:intron | 40.0% | |
GAGTTTATATTTAGGGGGTG+GGG | + | chr1.1:57561484-57561503 | MS.gene062234:intron | 40.0% | |
GGAATTACAAGAAGCAGATC+TGG | + | chr1.1:57564204-57564223 | MS.gene062234:CDS | 40.0% | |
GTAAATTGGCCACCCTATTA+TGG | - | chr1.1:57563112-57563131 | None:intergenic | 40.0% | |
TAGAAGATTCTTTACTGCCC+TGG | - | chr1.1:57563080-57563099 | None:intergenic | 40.0% | |
TATTGCACGTGATCCTTGTT+GGG | - | chr1.1:57563792-57563811 | None:intergenic | 40.0% | |
TCACACATCGCAACAATACA+TGG | - | chr1.1:57563137-57563156 | None:intergenic | 40.0% | |
TCATTTATGCCCTTGGTGAA+TGG | + | chr1.1:57564122-57564141 | MS.gene062234:intron | 40.0% | |
TCCATACTTTACGGCTTTCT+AGG | - | chr1.1:57562914-57562933 | None:intergenic | 40.0% | |
TCCATTCTCAGTTGGCATAA+AGG | - | chr1.1:57564187-57564206 | None:intergenic | 40.0% | |
TCCTTTATGCCAACTGAGAA+TGG | + | chr1.1:57564183-57564202 | MS.gene062234:CDS | 40.0% | |
TCTGAATACAAAGTGTGAGG+TGG | + | chr1.1:57561540-57561559 | MS.gene062234:intron | 40.0% | |
TCTTCTTGATGAAATGCAGC+AGG | - | chr1.1:57564576-57564595 | None:intergenic | 40.0% | |
TGACTACACAATGTTGATCC+AGG | + | chr1.1:57563059-57563078 | MS.gene062234:intron | 40.0% | |
TGATGATTAACATGTGGAGG+AGG | - | chr1.1:57564507-57564526 | None:intergenic | 40.0% | |
TGCATTCATTAGGTCGTTGT+GGG | + | chr1.1:57564396-57564415 | MS.gene062234:intron | 40.0% | |
TTACAAGAAGCAGATCTGGT+GGG | + | chr1.1:57564208-57564227 | MS.gene062234:CDS | 40.0% | |
TTCTTCTTCAAAGCTGTCTC+CGG | - | chr1.1:57560910-57560929 | None:intergenic | 40.0% | |
! | AATGCAGCAGGTGTCATAAA+AGG | - | chr1.1:57564564-57564583 | None:intergenic | 40.0% |
! | AGTGAGTCGATTCCATAGAA+GGG | - | chr1.1:57564063-57564082 | None:intergenic | 40.0% |
! | ATTGGAAGTATGTAGCAGAG+CGG | - | chr1.1:57562630-57562649 | None:intergenic | 40.0% |
! | CGGTCAGATCCATCTTTTAA+AGG | - | chr1.1:57563329-57563348 | None:intergenic | 40.0% |
! | CTTGGATTTTTCCATGGCAA+CGG | + | chr1.1:57560870-57560889 | MS.gene062234:CDS | 40.0% |
! | GATTTTCTATGCTCTGTCTC+AGG | + | chr1.1:57563742-57563761 | MS.gene062234:intron | 40.0% |
! | TAGTGAGTCGATTCCATAGA+AGG | - | chr1.1:57564064-57564083 | None:intergenic | 40.0% |
! | TTCGTCAATCGACTTCTTCA+GGG | + | chr1.1:57563852-57563871 | MS.gene062234:CDS | 40.0% |
! | TTTGGAGCTGTGAATGTAGT+GGG | + | chr1.1:57560796-57560815 | MS.gene062234:CDS | 40.0% |
!! | ACAGCTTTGAAGAAGAAGAG+GGG | + | chr1.1:57560913-57560932 | MS.gene062234:CDS | 40.0% |
!! | AGACAGCTTTGAAGAAGAAG+AGG | + | chr1.1:57560911-57560930 | MS.gene062234:CDS | 40.0% |
!! | GACAGCTTTGAAGAAGAAGA+GGG | + | chr1.1:57560912-57560931 | MS.gene062234:CDS | 40.0% |
!! | GGTGGATGTGGATATTTTTG+TGG | + | chr1.1:57561558-57561577 | MS.gene062234:intron | 40.0% |
!!! | TTTTGGAGCTGTGAATGTAG+TGG | + | chr1.1:57560795-57560814 | MS.gene062234:CDS | 40.0% |
AGCAAAACAGCAAGAAGCAG+AGG | + | chr1.1:57564445-57564464 | MS.gene062234:CDS | 45.0% | |
ATACTTCCAATAGTGGCCAG+TGG | + | chr1.1:57562639-57562658 | MS.gene062234:intron | 45.0% | |
ATATGCATTCTCTCTGCCAC+TGG | + | chr1.1:57563809-57563828 | MS.gene062234:CDS | 45.0% | |
ATCGACGATGAAATCGGCAT+AGG | - | chr1.1:57561000-57561019 | None:intergenic | 45.0% | |
ATCTCTGTCTTCAGCAGATG+AGG | - | chr1.1:57564643-57564662 | None:intergenic | 45.0% | |
ATGAAATCGGCATAGGCGAA+AGG | - | chr1.1:57560993-57561012 | None:intergenic | 45.0% | |
ATGTCCGCATTCGTCTTACT+TGG | - | chr1.1:57562732-57562751 | None:intergenic | 45.0% | |
CCCTGTAATTCCATTCACCA+AGG | - | chr1.1:57564135-57564154 | None:intergenic | 45.0% | |
CCCTTGGTGAATGGAATTAC+AGG | + | chr1.1:57564131-57564150 | MS.gene062234:intron | 45.0% | |
GAGAGTTCTCTGCTTGGAAA+AGG | + | chr1.1:57561031-57561050 | MS.gene062234:CDS | 45.0% | |
GAGGGAATTGCATACTCAGT+AGG | + | chr1.1:57563571-57563590 | MS.gene062234:CDS | 45.0% | |
GAGTTCTCTGCTTGGAAAAG+GGG | + | chr1.1:57561033-57561052 | MS.gene062234:CDS | 45.0% | |
GCAAAACAGCAAGAAGCAGA+GGG | + | chr1.1:57564446-57564465 | MS.gene062234:CDS | 45.0% | |
GCCTAGAAAGCCGTAAAGTA+TGG | + | chr1.1:57562910-57562929 | MS.gene062234:intron | 45.0% | |
GTCTTAATCATCGGGTTCCT+AGG | - | chr1.1:57561912-57561931 | None:intergenic | 45.0% | |
GTGCATTCATTAGGTCGTTG+TGG | + | chr1.1:57564395-57564414 | MS.gene062234:intron | 45.0% | |
GTTTATATTTAGGGGGTGGG+GGG | + | chr1.1:57561486-57561505 | MS.gene062234:intron | 45.0% | |
TACAAAGTGTGAGGTGGATG+TGG | + | chr1.1:57561546-57561565 | MS.gene062234:intron | 45.0% | |
TGAAATCGGCATAGGCGAAA+GGG | - | chr1.1:57560992-57561011 | None:intergenic | 45.0% | |
TGGCATAAAGGAACCAGACA+AGG | - | chr1.1:57564175-57564194 | None:intergenic | 45.0% | |
TTTAGAGGCCAAAATGGCAG+TGG | - | chr1.1:57562581-57562600 | None:intergenic | 45.0% | |
TTTCCAAGCAGAGAACTCTC+CGG | - | chr1.1:57561031-57561050 | None:intergenic | 45.0% | |
TTTGAAAGTCCACCTGTGCA+AGG | + | chr1.1:57561105-57561124 | MS.gene062234:CDS | 45.0% | |
! | ACTCCAGAGTTTTACCTGCA+CGG | - | chr1.1:57564310-57564329 | None:intergenic | 45.0% |
! | CTTCGTCAATCGACTTCTTC+AGG | + | chr1.1:57563851-57563870 | MS.gene062234:CDS | 45.0% |
! | GCTAGTTTGTCGTGTAGAAC+TGG | + | chr1.1:57561730-57561749 | MS.gene062234:intron | 45.0% |
! | GTTGTGGGAAGTTTTCTTCC+TGG | + | chr1.1:57564411-57564430 | MS.gene062234:CDS | 45.0% |
! | TCCATGATAGCGATGCATAG+TGG | + | chr1.1:57562227-57562246 | MS.gene062234:intron | 45.0% |
! | TCGTCAATCGACTTCTTCAG+GGG | + | chr1.1:57563853-57563872 | MS.gene062234:CDS | 45.0% |
! | TGCAAGTGAACATGCTGACT+TGG | + | chr1.1:57562805-57562824 | MS.gene062234:intron | 45.0% |
! | TTTTCTTCCTGGTCACCATC+TGG | + | chr1.1:57564422-57564441 | MS.gene062234:CDS | 45.0% |
!! | AGGGGGTACTTTAACGTATG+AGG | + | chr1.1:57563871-57563890 | MS.gene062234:CDS | 45.0% |
!! | GAATGTAGTGGGTGGTAATG+AGG | + | chr1.1:57560807-57560826 | MS.gene062234:CDS | 45.0% |
!! | GCTGGTTTGCTTATAGCTTC+CGG | + | chr1.1:57564282-57564301 | MS.gene062234:CDS | 45.0% |
!! | TGCAGGTAAAACTCTGGAGT+AGG | + | chr1.1:57564310-57564329 | MS.gene062234:intron | 45.0% |
!!! | GCCATTTTGGCCTCTAAAGT+GGG | + | chr1.1:57562583-57562602 | MS.gene062234:intron | 45.0% |
!!! | TCTTGCTGTTTTGCTCCAGA+TGG | - | chr1.1:57564440-57564459 | None:intergenic | 45.0% |
!!! | TGCCATTTTGGCCTCTAAAG+TGG | + | chr1.1:57562582-57562601 | MS.gene062234:intron | 45.0% |
AAACAGCAAGAAGCAGAGGG+TGG | + | chr1.1:57564449-57564468 | MS.gene062234:CDS | 50.0% | |
AGAAGAAGAGGGGAAGACCA+AGG | + | chr1.1:57560923-57560942 | MS.gene062234:CDS | 50.0% | |
AGGGGAAGACCAAGGAAGTA+TGG | + | chr1.1:57560931-57560950 | MS.gene062234:CDS | 50.0% | |
CTGCTTGGAAAAGGGGTAGA+GGG | + | chr1.1:57561040-57561059 | MS.gene062234:CDS | 50.0% | |
GCCACTATGCATCGCTATCA+TGG | - | chr1.1:57562231-57562250 | None:intergenic | 50.0% | |
GCTTACAGTGAATTCTGGCG+AGG | + | chr1.1:57563615-57563634 | MS.gene062234:CDS | 50.0% | |
GGTGAATGGAATTACAGGGG+CGG | + | chr1.1:57564136-57564155 | MS.gene062234:intron | 50.0% | |
GGTTGGCACTCTGTCTTTGA+AGG | + | chr1.1:57562875-57562894 | MS.gene062234:intron | 50.0% | |
TCTGCTTGGAAAAGGGGTAG+AGG | + | chr1.1:57561039-57561058 | MS.gene062234:CDS | 50.0% | |
TGAGCTTTCAAGCTGCTCCA+AGG | + | chr1.1:57560836-57560855 | MS.gene062234:CDS | 50.0% | |
TGGTGGGATGAGTGTCTCTT+TGG | + | chr1.1:57564224-57564243 | MS.gene062234:CDS | 50.0% | |
! | CGTCAATCGACTTCTTCAGG+GGG | + | chr1.1:57563854-57563873 | MS.gene062234:CDS | 50.0% |
! | CTCCAGAGTTTTACCTGCAC+GGG | - | chr1.1:57564309-57564328 | None:intergenic | 50.0% |
! | GCCCACTTTAGAGGCCAAAA+TGG | - | chr1.1:57562587-57562606 | None:intergenic | 50.0% |
! | GGGGAAGACCAAGGAAGTAT+GGG | + | chr1.1:57560932-57560951 | MS.gene062234:CDS | 50.0% |
! | GTAGGTGGAGGTGTAAGTGA+GGG | + | chr1.1:57563553-57563572 | MS.gene062234:CDS | 50.0% |
! | TGTAGGTGGAGGTGTAAGTG+AGG | + | chr1.1:57563552-57563571 | MS.gene062234:CDS | 50.0% |
! | TTTTGCTCCAGATGGTGACC+AGG | - | chr1.1:57564432-57564451 | None:intergenic | 50.0% |
! | TTTTTCCATGGCAACGGTGC+CGG | + | chr1.1:57560876-57560895 | MS.gene062234:CDS | 50.0% |
!! | TCATCGTCGATTCCGTTGAC+CGG | + | chr1.1:57561009-57561028 | MS.gene062234:CDS | 50.0% |
!! | TGCTGGAACCACTGCCATTT+TGG | + | chr1.1:57562570-57562589 | MS.gene062234:intron | 50.0% |
CACCCAATACTCGGCCATCT+GGG | - | chr1.1:57564254-57564273 | None:intergenic | 55.0% | |
CCATCTGGCCCATACTTCCT+TGG | - | chr1.1:57560943-57560962 | None:intergenic | 55.0% | |
CGAGTCCACCACCCAATACT+CGG | - | chr1.1:57564263-57564282 | None:intergenic | 55.0% | |
CGCTGTTGTGCCCACTTTAG+AGG | - | chr1.1:57562596-57562615 | None:intergenic | 55.0% | |
GCAGAGAACTCTCCGGTCAA+CGG | - | chr1.1:57561024-57561043 | None:intergenic | 55.0% | |
GGAGCAGCTTGAAAGCTCAC+AGG | - | chr1.1:57560835-57560854 | None:intergenic | 55.0% | |
GGGATGAGTGTCTCTTTGGC+AGG | + | chr1.1:57564228-57564247 | MS.gene062234:CDS | 55.0% | |
GTCCCGTGCAGGTAAAACTC+TGG | + | chr1.1:57564304-57564323 | MS.gene062234:intron | 55.0% | |
TGACCGGAGAGTTCTCTGCT+TGG | + | chr1.1:57561025-57561044 | MS.gene062234:CDS | 55.0% | |
TGCACGTGATCCTTGTTGGG+AGG | - | chr1.1:57563789-57563808 | None:intergenic | 55.0% | |
TTCCAATAGTGGCCAGTGGC+CGG | + | chr1.1:57562643-57562662 | MS.gene062234:intron | 55.0% | |
! | CCAAGGAAGTATGGGCCAGA+TGG | + | chr1.1:57560940-57560959 | MS.gene062234:CDS | 55.0% |
! | GAGTTTTACCTGCACGGGAC+CGG | - | chr1.1:57564304-57564323 | None:intergenic | 55.0% |
! | GGAGCTGTGAATGTAGTGGG+TGG | + | chr1.1:57560799-57560818 | MS.gene062234:CDS | 55.0% |
AGGCCCAGATGGCCGAGTAT+TGG | + | chr1.1:57564248-57564267 | MS.gene062234:CDS | 60.0% | |
CCACCCAATACTCGGCCATC+TGG | - | chr1.1:57564255-57564274 | None:intergenic | 60.0% | |
CCAGATGGTAAGCCTGCTCC+TGG | + | chr1.1:57560955-57560974 | MS.gene062234:CDS | 60.0% | |
CCAGGAGCAGGCTTACCATC+TGG | - | chr1.1:57560958-57560977 | None:intergenic | 60.0% | |
GAAAGGGCAGTCACAGCTCC+AGG | - | chr1.1:57560976-57560995 | None:intergenic | 60.0% | |
GGCCCAGATGGCCGAGTATT+GGG | + | chr1.1:57564249-57564268 | MS.gene062234:CDS | 60.0% | |
GTCTCTTTGGCAGGCCCAGA+TGG | + | chr1.1:57564237-57564256 | MS.gene062234:CDS | 60.0% | |
TATAGCTTCCGGTCCCGTGC+AGG | + | chr1.1:57564293-57564312 | MS.gene062234:CDS | 60.0% | |
TATTTAGGGGGTGGGGGGAG+TGG | + | chr1.1:57561491-57561510 | MS.gene062234:intron | 60.0% | |
TTTGTCCCTTCTCCGGCCAC+TGG | - | chr1.1:57562658-57562677 | None:intergenic | 60.0% | |
!! | CCAGATGGCCGAGTATTGGG+TGG | + | chr1.1:57564252-57564271 | MS.gene062234:CDS | 60.0% |
!! | GATGGCCGAGTATTGGGTGG+TGG | + | chr1.1:57564255-57564274 | MS.gene062234:CDS | 60.0% |
!! | GTATTGGGTGGTGGACTCGC+TGG | + | chr1.1:57564264-57564283 | MS.gene062234:CDS | 60.0% |
AGTGGCCAGTGGCCGGAGAA+GGG | + | chr1.1:57562650-57562669 | MS.gene062234:intron | 65.0% | |
CTCCGGCCACTGGCCACTAT+TGG | - | chr1.1:57562648-57562667 | None:intergenic | 65.0% | |
GCAGTCACAGCTCCAGGAGC+AGG | - | chr1.1:57560970-57560989 | None:intergenic | 65.0% | |
GCTGTCTCCGGCAACGACAC+CGG | - | chr1.1:57560898-57560917 | None:intergenic | 65.0% | |
TAGTGGCCAGTGGCCGGAGA+AGG | + | chr1.1:57562649-57562668 | MS.gene062234:intron | 65.0% | |
!! | AACGGTGCCGGTGTCGTTGC+CGG | + | chr1.1:57560888-57560907 | MS.gene062234:CDS | 65.0% |
CGACACCGGCACCGTTGCCA+TGG | - | chr1.1:57560884-57560903 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 57560778 | 57564707 | 57560778 | ID=MS.gene062234 |
chr1.1 | mRNA | 57560778 | 57564707 | 57560778 | ID=MS.gene062234.t1;Parent=MS.gene062234 |
chr1.1 | exon | 57560778 | 57561126 | 57560778 | ID=MS.gene062234.t1.exon1;Parent=MS.gene062234.t1 |
chr1.1 | CDS | 57560778 | 57561126 | 57560778 | ID=cds.MS.gene062234.t1;Parent=MS.gene062234.t1 |
chr1.1 | exon | 57563551 | 57563636 | 57563551 | ID=MS.gene062234.t1.exon2;Parent=MS.gene062234.t1 |
chr1.1 | CDS | 57563551 | 57563636 | 57563551 | ID=cds.MS.gene062234.t1;Parent=MS.gene062234.t1 |
chr1.1 | exon | 57563764 | 57563892 | 57563764 | ID=MS.gene062234.t1.exon3;Parent=MS.gene062234.t1 |
chr1.1 | CDS | 57563764 | 57563892 | 57563764 | ID=cds.MS.gene062234.t1;Parent=MS.gene062234.t1 |
chr1.1 | exon | 57564153 | 57564314 | 57564153 | ID=MS.gene062234.t1.exon4;Parent=MS.gene062234.t1 |
chr1.1 | CDS | 57564153 | 57564314 | 57564153 | ID=cds.MS.gene062234.t1;Parent=MS.gene062234.t1 |
chr1.1 | exon | 57564408 | 57564707 | 57564408 | ID=MS.gene062234.t1.exon5;Parent=MS.gene062234.t1 |
chr1.1 | CDS | 57564408 | 57564707 | 57564408 | ID=cds.MS.gene062234.t1;Parent=MS.gene062234.t1 |
Gene Sequence |
Protein sequence |