Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062424.t1 | XP_003627605.1 | 92.9 | 168 | 12 | 0 | 16 | 183 | 414 | 581 | 2.30E-81 | 312.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062424.t1 | Q8L7K9 | 78.6 | 168 | 36 | 0 | 16 | 183 | 417 | 584 | 8.3e-72 | 271.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062424.t1 | G7LBU3 | 92.9 | 168 | 12 | 0 | 16 | 183 | 414 | 581 | 1.7e-81 | 312.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056174 | MS.gene062424 | 0.803209 | 3.89E-49 | -1.69E-46 |
| MS.gene058294 | MS.gene062424 | 0.801398 | 9.18E-49 | -1.69E-46 |
| MS.gene059584 | MS.gene062424 | 0.851104 | 1.10E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062424.t1 | MTR_8g032040 | 92.857 | 168 | 12 | 0 | 16 | 183 | 414 | 581 | 6.00e-107 | 323 |
| MS.gene062424.t1 | MTR_7g076650 | 80.952 | 168 | 32 | 0 | 16 | 183 | 411 | 578 | 2.86e-92 | 285 |
| MS.gene062424.t1 | MTR_7g076650 | 66.019 | 206 | 32 | 1 | 16 | 183 | 411 | 616 | 1.07e-84 | 267 |
| MS.gene062424.t1 | MTR_8g009500 | 60.795 | 176 | 69 | 0 | 8 | 183 | 335 | 510 | 9.99e-74 | 236 |
| MS.gene062424.t1 | MTR_8g009500 | 60.795 | 176 | 69 | 0 | 8 | 183 | 429 | 604 | 7.06e-73 | 236 |
| MS.gene062424.t1 | MTR_7g076650 | 86.111 | 108 | 15 | 0 | 16 | 123 | 411 | 518 | 2.56e-60 | 200 |
| MS.gene062424.t1 | MTR_8g102620 | 46.053 | 152 | 80 | 2 | 16 | 167 | 416 | 565 | 6.01e-34 | 130 |
| MS.gene062424.t1 | MTR_3g110330 | 42.442 | 172 | 95 | 3 | 16 | 187 | 403 | 570 | 2.33e-30 | 120 |
| MS.gene062424.t1 | MTR_8g014390 | 40.437 | 183 | 105 | 3 | 5 | 187 | 402 | 580 | 7.34e-30 | 119 |
| MS.gene062424.t1 | MTR_2g101040 | 39.344 | 183 | 107 | 3 | 5 | 187 | 489 | 667 | 3.42e-29 | 117 |
| MS.gene062424.t1 | MTR_2g101040 | 41.420 | 169 | 95 | 3 | 16 | 184 | 466 | 630 | 2.50e-28 | 114 |
| MS.gene062424.t1 | MTR_2g101040 | 41.509 | 159 | 91 | 2 | 5 | 163 | 455 | 611 | 1.29e-27 | 112 |
| MS.gene062424.t1 | MTR_2g101040 | 34.597 | 211 | 106 | 5 | 5 | 187 | 455 | 661 | 1.04e-24 | 104 |
| MS.gene062424.t1 | MTR_8g009500 | 60.000 | 75 | 30 | 0 | 8 | 82 | 429 | 503 | 7.26e-24 | 101 |
| MS.gene062424.t1 | MTR_2g098580 | 51.429 | 105 | 5 | 1 | 186 | 244 | 329 | 433 | 4.27e-22 | 96.7 |
| MS.gene062424.t1 | MTR_4g066650 | 50.476 | 105 | 6 | 1 | 186 | 244 | 319 | 423 | 1.63e-21 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062424.t1 | AT4G00570 | 78.571 | 168 | 36 | 0 | 16 | 183 | 417 | 584 | 1.62e-89 | 278 |
| MS.gene062424.t1 | AT2G13560 | 62.500 | 176 | 66 | 0 | 8 | 183 | 424 | 599 | 1.34e-75 | 243 |
| MS.gene062424.t1 | AT5G25880 | 44.767 | 172 | 91 | 3 | 16 | 187 | 413 | 580 | 5.45e-37 | 139 |
| MS.gene062424.t1 | AT5G25880 | 48.592 | 142 | 71 | 2 | 16 | 157 | 413 | 552 | 4.01e-35 | 133 |
| MS.gene062424.t1 | AT2G19900 | 44.509 | 173 | 90 | 4 | 16 | 187 | 307 | 474 | 2.88e-32 | 124 |
| MS.gene062424.t1 | AT2G19900 | 44.509 | 173 | 90 | 4 | 16 | 187 | 406 | 573 | 4.45e-32 | 125 |
| MS.gene062424.t1 | AT5G11670 | 43.023 | 172 | 94 | 3 | 16 | 187 | 413 | 580 | 9.52e-30 | 118 |
| MS.gene062424.t1 | AT1G79750 | 40.698 | 172 | 98 | 3 | 16 | 187 | 471 | 638 | 5.65e-28 | 114 |
| MS.gene062424.t1 | AT1G65430 | 43.810 | 105 | 13 | 1 | 186 | 244 | 310 | 414 | 6.83e-18 | 84.3 |
| MS.gene062424.t1 | AT2G31510 | 46.000 | 100 | 8 | 1 | 191 | 244 | 252 | 351 | 9.04e-17 | 80.9 |
| MS.gene062424.t1 | AT2G31510 | 46.000 | 100 | 8 | 1 | 191 | 244 | 324 | 423 | 1.03e-16 | 80.9 |
| MS.gene062424.t1 | AT2G31510 | 46.000 | 100 | 8 | 1 | 191 | 244 | 324 | 423 | 1.23e-16 | 80.5 |
| MS.gene062424.t1 | AT1G05890 | 42.857 | 105 | 14 | 1 | 186 | 244 | 314 | 418 | 2.69e-16 | 79.3 |
| MS.gene062424.t1 | AT1G05890 | 42.857 | 105 | 14 | 1 | 186 | 244 | 356 | 460 | 2.71e-16 | 79.3 |
Find 67 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTCGAAAATGTAGATTT+TGG | 0.215086 | 7.3:+75239708 | MS.gene062424:CDS |
| CATAACCGAGGCTTGGTTAC+AGG | 0.296527 | 7.3:+75241492 | MS.gene062424:CDS |
| AAAACTGTGTTAGATGGTTA+AGG | 0.302490 | 7.3:+75241887 | MS.gene062424:CDS |
| TTCTCTATCCATCTGTTAAT+AGG | 0.322427 | 7.3:+75240370 | MS.gene062424:CDS |
| GCATAGCATGTGTAGATAAA+AGG | 0.328497 | 7.3:-75240977 | None:intergenic |
| AGATTCAGTTCAGGTGCTTA+AGG | 0.381679 | 7.3:+75239463 | MS.gene062424:intron |
| TATTACAGATGGAATGTTGC+AGG | 0.381871 | 7.3:+75239991 | MS.gene062424:CDS |
| TAATCATGTTGGGGAACATA+TGG | 0.396000 | 7.3:+75239668 | MS.gene062424:CDS |
| AAACTGTGTTAGATGGTTAA+GGG | 0.396058 | 7.3:+75241888 | MS.gene062424:CDS |
| ATGTCTAATCCCACCTTGAA+TGG | 0.407376 | 7.3:+75239527 | MS.gene062424:CDS |
| CAGAGGGACATGGTGATGTC+TGG | 0.416369 | 7.3:+75240852 | MS.gene062424:CDS |
| AGCAGCAGTTGAAGAAGATC+TGG | 0.417769 | 7.3:+75240829 | MS.gene062424:CDS |
| CTCCTAGGTTTGTCTGGTGT+TGG | 0.433897 | 7.3:+75239284 | MS.gene062424:intron |
| TCAGAAAACAATGGAGCAAA+TGG | 0.434254 | 7.3:+75241849 | MS.gene062424:intron |
| GATAGCAGGCTTTGTTGAAA+CGG | 0.434286 | 7.3:-75239498 | None:intergenic |
| CACGTGCTCCTAGGTTTGTC+TGG | 0.437834 | 7.3:+75239278 | MS.gene062424:intron |
| TATCTACACATGCTATGCCT+TGG | 0.446595 | 7.3:+75240982 | MS.gene062424:CDS |
| CTAGGTTTGTCTGGTGTTGG+TGG | 0.453557 | 7.3:+75239287 | MS.gene062424:intron |
| TAACAGCCTTGCTTCATACA+TGG | 0.459693 | 7.3:+75240323 | MS.gene062424:intron |
| TTTACATTTCAGAATTGGGT+TGG | 0.463759 | 7.3:+75239943 | MS.gene062424:intron |
| TGAGAGATACCTTGGTATCA+AGG | 0.487107 | 7.3:-75241764 | None:intergenic |
| TGTGTAGGTGATGGGAAAGT+AGG | 0.488315 | 7.3:+75239814 | MS.gene062424:intron |
| ATGCATTGCAGACAGAAACT+TGG | 0.489736 | 7.3:+75241700 | MS.gene062424:intron |
| GCATGCCATACCCTGGGAAA+AGG | 0.496064 | 7.3:-75239864 | None:intergenic |
| TTACATTTCAGAATTGGGTT+GGG | 0.498382 | 7.3:+75239944 | MS.gene062424:intron |
| TTAAGTTCATAACCGAGGCT+TGG | 0.508131 | 7.3:+75241485 | MS.gene062424:CDS |
| GGGTTGGGAACACTTCTGTC+AGG | 0.510046 | 7.3:+75239959 | MS.gene062424:CDS |
| TTGTACAAACAAACCATTCA+AGG | 0.510265 | 7.3:-75239540 | None:intergenic |
| GACATGTTTGCAAGTTCTCT+AGG | 0.513358 | 7.3:-75240875 | None:intergenic |
| ATGAACTTAAGTTGTGACTC+AGG | 0.518358 | 7.3:-75241472 | None:intergenic |
| TCCTTGTAAAATATCTTCCT+CGG | 0.518401 | 7.3:-75240346 | None:intergenic |
| TTAGACATGGCAAAGATAGC+AGG | 0.524176 | 7.3:-75239512 | None:intergenic |
| CGAGATGTTACCGCAGAGGT+TGG | 0.526147 | 7.3:+75240791 | MS.gene062424:CDS |
| AACTGTGTTAGATGGTTAAG+GGG | 0.536559 | 7.3:+75241889 | MS.gene062424:CDS |
| GGTGCTCATCTTATTACAGA+TGG | 0.539673 | 7.3:+75239980 | MS.gene062424:CDS |
| AGCATCAATAGCAGTGCACT+CGG | 0.544374 | 7.3:-75239643 | None:intergenic |
| ACATGCTATGCCTTGGTGCA+TGG | 0.548401 | 7.3:+75240989 | MS.gene062424:CDS |
| GAAGATCTGGCAGAGGGACA+TGG | 0.561961 | 7.3:+75240842 | MS.gene062424:CDS |
| ACTTAAGTTGTGACTCAGGT+TGG | 0.567637 | 7.3:-75241468 | None:intergenic |
| CATGGTCAGACCATGGTGAA+AGG | 0.567864 | 7.3:+75241007 | MS.gene062424:CDS |
| TGTTGCAGGCAGCTGCTGAA+TGG | 0.583927 | 7.3:+75240005 | MS.gene062424:CDS |
| AGTTGAAGAAGATCTGGCAG+AGG | 0.586342 | 7.3:+75240835 | MS.gene062424:CDS |
| GAAAACAATGGAGCAAATGG+TGG | 0.588829 | 7.3:+75241852 | MS.gene062424:intron |
| TCAGACCATGGTGAAAGGAC+TGG | 0.594334 | 7.3:+75241012 | MS.gene062424:CDS |
| ATTTACCTGTAACCAAGCCT+CGG | 0.595509 | 7.3:-75241497 | None:intergenic |
| ATGAAGCAGCTAAACAAGAG+GGG | 0.599723 | 7.3:+75241058 | MS.gene062424:CDS |
| ACTGTGTTAGATGGTTAAGG+GGG | 0.600365 | 7.3:+75241890 | MS.gene062424:CDS |
| GAACATTACCTATTAACAGA+TGG | 0.601866 | 7.3:-75240378 | None:intergenic |
| CCTTGCTTCATACATGGCCG+AGG | 0.602257 | 7.3:+75240329 | MS.gene062424:CDS |
| TATGAAGCAGCTAAACAAGA+GGG | 0.604422 | 7.3:+75241057 | MS.gene062424:CDS |
| ACAAACAAACCATTCAAGGT+GGG | 0.617272 | 7.3:-75239536 | None:intergenic |
| CTGGTATCTCCTTGATACCA+AGG | 0.620045 | 7.3:+75241755 | MS.gene062424:CDS |
| CCTCGGCCATGTATGAAGCA+AGG | 0.623201 | 7.3:-75240329 | None:intergenic |
| TACAAACAAACCATTCAAGG+TGG | 0.625301 | 7.3:-75239537 | None:intergenic |
| GTTGAAGAAGATCTGGCAGA+GGG | 0.628603 | 7.3:+75240836 | MS.gene062424:CDS |
| GAACATATGGTGTTTGCCAG+TGG | 0.635284 | 7.3:+75239681 | MS.gene062424:CDS |
| TTATGAAGCAGCTAAACAAG+AGG | 0.656326 | 7.3:+75241056 | MS.gene062424:CDS |
| TGAAGCAGCTAAACAAGAGG+GGG | 0.657257 | 7.3:+75241059 | MS.gene062424:CDS |
| ATTCAAGGTGGGATTAGACA+TGG | 0.659301 | 7.3:-75239525 | None:intergenic |
| AAAAGTACACAACCACACAC+TGG | 0.665666 | 7.3:+75241736 | MS.gene062424:CDS |
| CACTGCAGCTCCAACCTCTG+CGG | 0.667707 | 7.3:-75240801 | None:intergenic |
| ACAACTTAAGTTCATAACCG+AGG | 0.683597 | 7.3:+75241480 | MS.gene062424:CDS |
| CATGGTCTGACCATGCACCA+AGG | 0.699416 | 7.3:-75240999 | None:intergenic |
| CTTGGTGCATGGTCAGACCA+TGG | 0.701151 | 7.3:+75241000 | MS.gene062424:CDS |
| AATCGCCAGTCCTTTCACCA+TGG | 0.713996 | 7.3:-75241017 | None:intergenic |
| CATACGAGATGTTACCGCAG+AGG | 0.720471 | 7.3:+75240787 | MS.gene062424:CDS |
| ATCAAGGAGATACCAGTGTG+TGG | 0.744996 | 7.3:-75241748 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAACATTTGATTTTTAAT+AGG | + | chr7.3:75241622-75241641 | MS.gene062424:intron | 10.0% |
| !!! | ATTTTTTGATTATTTTTTGT+TGG | + | chr7.3:75241285-75241304 | MS.gene062424:intron | 10.0% |
| !!! | TTTTTTGATTATTTTTTGTT+GGG | + | chr7.3:75241286-75241305 | MS.gene062424:intron | 10.0% |
| !! | AAACAAAAAAAATAATCAGA+GGG | - | chr7.3:75240410-75240429 | None:intergenic | 15.0% |
| !! | ATAATAAAAACTAATGAAAG+AGG | - | chr7.3:75239740-75239759 | None:intergenic | 15.0% |
| !! | ATCTTTATAAAAATATGTCT+CGG | - | chr7.3:75241152-75241171 | None:intergenic | 15.0% |
| !! | CAATGAAATTATTAACAAAA+CGG | - | chr7.3:75240218-75240237 | None:intergenic | 15.0% |
| !!! | ATTTTTTAATGAAACTAATG+TGG | + | chr7.3:75240482-75240501 | MS.gene062424:intron | 15.0% |
| !!! | TATTTGTTAATTTTGTTTCA+TGG | + | chr7.3:75241309-75241328 | MS.gene062424:intron | 15.0% |
| !!! | TCTTTTGATTATTTTTTGTT+GGG | + | chr7.3:75241332-75241351 | MS.gene062424:intron | 15.0% |
| !!! | TTTTTATTTTCAGAAAACAA+TGG | + | chr7.3:75241840-75241859 | MS.gene062424:intron | 15.0% |
| !! | ATTTCAAAAACTTTGAACAA+AGG | - | chr7.3:75241542-75241561 | None:intergenic | 20.0% |
| !! | CAAACAAAAAAAATAATCAG+AGG | - | chr7.3:75240411-75240430 | None:intergenic | 20.0% |
| !! | GTGACATATAAAAATAAAGT+AGG | - | chr7.3:75240256-75240275 | None:intergenic | 20.0% |
| !! | TAGATATATGGTATCATATT+TGG | - | chr7.3:75240537-75240556 | None:intergenic | 20.0% |
| !! | TCTTTATAAAAATATGTCTC+GGG | - | chr7.3:75241151-75241170 | None:intergenic | 20.0% |
| !! | TTTACTTACAATTGAGTTAT+TGG | + | chr7.3:75239901-75239920 | MS.gene062424:intron | 20.0% |
| !!! | AAAAAGTGTAAATGTTACTA+TGG | - | chr7.3:75239588-75239607 | None:intergenic | 20.0% |
| !!! | CACATATTTTGTTAGATATA+TGG | - | chr7.3:75240549-75240568 | None:intergenic | 20.0% |
| !!! | CGTTTTGTTAATAATTTCAT+TGG | + | chr7.3:75240216-75240235 | MS.gene062424:intron | 20.0% |
| !!! | GTCTTTTGATTATTTTTTGT+TGG | + | chr7.3:75241331-75241350 | MS.gene062424:intron | 20.0% |
| !!! | TCATTTTTGTTTGTCTATTA+CGG | + | chr7.3:75239613-75239632 | MS.gene062424:intron | 20.0% |
| ! | AAAAAATAATCAGAGGGAAA+AGG | - | chr7.3:75240404-75240423 | None:intergenic | 25.0% |
| ! | AAAAATAATCAGAGGGAAAA+GGG | - | chr7.3:75240403-75240422 | None:intergenic | 25.0% |
| ! | AACTGAAAAAAGAAGAGAAA+TGG | + | chr7.3:75241213-75241232 | MS.gene062424:intron | 25.0% |
| ! | AATAAATATGAGAGATACCT+TGG | - | chr7.3:75241775-75241794 | None:intergenic | 25.0% |
| ! | AATCTTAATCTGTGTTCTTA+TGG | + | chr7.3:75241398-75241417 | MS.gene062424:intron | 25.0% |
| ! | ATAAATATCTTTGACAGCTT+CGG | + | chr7.3:75239392-75239411 | MS.gene062424:intron | 25.0% |
| ! | CAGGTAAATGAATGAATATT+TGG | + | chr7.3:75241511-75241530 | MS.gene062424:intron | 25.0% |
| ! | GAACTTTACATTTCAGAATT+GGG | + | chr7.3:75239939-75239958 | MS.gene062424:intron | 25.0% |
| ! | TGAACTTTACATTTCAGAAT+TGG | + | chr7.3:75239938-75239957 | MS.gene062424:intron | 25.0% |
| !! | ACTTTTCCCAATTTATCAAA+AGG | + | chr7.3:75240909-75240928 | MS.gene062424:intron | 25.0% |
| !! | ATTGATGCTTTTAATCATGT+TGG | + | chr7.3:75239657-75239676 | MS.gene062424:CDS | 25.0% |
| !! | CAAAATCTACATTTTCGAAA+GGG | - | chr7.3:75239710-75239729 | None:intergenic | 25.0% |
| !! | CTCTATCCTTTTGATAAATT+GGG | - | chr7.3:75240918-75240937 | None:intergenic | 25.0% |
| !! | GTGCAATTAAAATTTTGTGT+AGG | + | chr7.3:75239799-75239818 | MS.gene062424:intron | 25.0% |
| !! | TAAAATTTTGTGTAGGTGAT+GGG | + | chr7.3:75239806-75239825 | MS.gene062424:intron | 25.0% |
| !! | TTAAAATTTTGTGTAGGTGA+TGG | + | chr7.3:75239805-75239824 | MS.gene062424:intron | 25.0% |
| !! | TTGATGCTTTTAATCATGTT+GGG | + | chr7.3:75239658-75239677 | MS.gene062424:CDS | 25.0% |
| !! | TTTATTGTCTAACTGAGTTT+TGG | + | chr7.3:75241789-75241808 | MS.gene062424:intron | 25.0% |
| !!! | AATAGAAAGTCTTGTTGATT+TGG | + | chr7.3:75240659-75240678 | MS.gene062424:intron | 25.0% |
| !!! | ATTTTTGTTTGTCTATTACG+GGG | + | chr7.3:75239615-75239634 | MS.gene062424:intron | 25.0% |
| !!! | CATTTTTGTTTGTCTATTAC+GGG | + | chr7.3:75239614-75239633 | MS.gene062424:intron | 25.0% |
| !!! | TATGGTGTCCTTTTTTTTAT+TGG | + | chr7.3:75241416-75241435 | MS.gene062424:intron | 25.0% |
| !!! | TGGTGTTGTTAAAGTTTATA+CGG | + | chr7.3:75241809-75241828 | MS.gene062424:intron | 25.0% |
| AAAACTGTGTTAGATGGTTA+AGG | + | chr7.3:75241887-75241906 | MS.gene062424:CDS | 30.0% | |
| AAACTGTGTTAGATGGTTAA+GGG | + | chr7.3:75241888-75241907 | MS.gene062424:CDS | 30.0% | |
| AACCTTCTTAACCTAAAGAT+CGG | - | chr7.3:75239252-75239271 | None:intergenic | 30.0% | |
| GAACATTACCTATTAACAGA+TGG | - | chr7.3:75240381-75240400 | None:intergenic | 30.0% | |
| GACTTAAAAACTGTGTTAGA+TGG | + | chr7.3:75241881-75241900 | MS.gene062424:CDS | 30.0% | |
| GTTCACAGTAGTTGAAATTA+TGG | + | chr7.3:75240704-75240723 | MS.gene062424:intron | 30.0% | |
| TAATAGTTGAGATTCAGTTC+AGG | + | chr7.3:75239454-75239473 | MS.gene062424:intron | 30.0% | |
| TCCATCTGCCAATAAAAAAA+AGG | - | chr7.3:75241427-75241446 | None:intergenic | 30.0% | |
| TCCTTGTAAAATATCTTCCT+CGG | - | chr7.3:75240349-75240368 | None:intergenic | 30.0% | |
| TTACATTTCAGAATTGGGTT+GGG | + | chr7.3:75239944-75239963 | MS.gene062424:intron | 30.0% | |
| TTCTCTATCCATCTGTTAAT+AGG | + | chr7.3:75240370-75240389 | MS.gene062424:CDS | 30.0% | |
| TTGTACAAACAAACCATTCA+AGG | - | chr7.3:75239543-75239562 | None:intergenic | 30.0% | |
| TTTACATTTCAGAATTGGGT+TGG | + | chr7.3:75239943-75239962 | MS.gene062424:intron | 30.0% | |
| TTTACCAAATGTAAGAGCTT+CGG | + | chr7.3:75240595-75240614 | MS.gene062424:intron | 30.0% | |
| ! | CCAAAATCTACATTTTCGAA+AGG | - | chr7.3:75239711-75239730 | None:intergenic | 30.0% |
| ! | CCTTTCGAAAATGTAGATTT+TGG | + | chr7.3:75239708-75239727 | MS.gene062424:CDS | 30.0% |
| ! | GCTCTATCCTTTTGATAAAT+TGG | - | chr7.3:75240919-75240938 | None:intergenic | 30.0% |
| ! | GTGTTGTTAAAGTTTATACG+GGG | + | chr7.3:75241811-75241830 | MS.gene062424:intron | 30.0% |
| ! | TGATGCTTTTAATCATGTTG+GGG | + | chr7.3:75239659-75239678 | MS.gene062424:CDS | 30.0% |
| ! | TGGTTTTCTGTATGTTATCT+AGG | + | chr7.3:75240502-75240521 | MS.gene062424:intron | 30.0% |
| !! | GGTGTTGTTAAAGTTTATAC+GGG | + | chr7.3:75241810-75241829 | MS.gene062424:intron | 30.0% |
| !! | TAGATAAAAGGTGCTCTATT+AGG | - | chr7.3:75240968-75240987 | None:intergenic | 30.0% |
| !! | TTTTTGTTTGTCTATTACGG+GGG | + | chr7.3:75239616-75239635 | MS.gene062424:intron | 30.0% |
| !!! | TCCTTTTTTTTATTGGCAGA+TGG | + | chr7.3:75241423-75241442 | MS.gene062424:intron | 30.0% |
| AAAAATATGTCTCGGGAATG+TGG | - | chr7.3:75241144-75241163 | None:intergenic | 35.0% | |
| AAATGTAAGAGCTTCGGATA+TGG | + | chr7.3:75240601-75240620 | MS.gene062424:intron | 35.0% | |
| AACGACTATACAAGAGATAG+TGG | - | chr7.3:75240577-75240596 | None:intergenic | 35.0% | |
| AACTGTGTTAGATGGTTAAG+GGG | + | chr7.3:75241889-75241908 | MS.gene062424:CDS | 35.0% | |
| ACAAACAAACCATTCAAGGT+GGG | - | chr7.3:75239539-75239558 | None:intergenic | 35.0% | |
| ACAACTTAAGTTCATAACCG+AGG | + | chr7.3:75241480-75241499 | MS.gene062424:CDS | 35.0% | |
| ACGACTATACAAGAGATAGT+GGG | - | chr7.3:75240576-75240595 | None:intergenic | 35.0% | |
| AGATTTCAACTACTGAGAAC+AGG | - | chr7.3:75240730-75240749 | None:intergenic | 35.0% | |
| ATATCCGAAGCTCTTACATT+TGG | - | chr7.3:75240602-75240621 | None:intergenic | 35.0% | |
| GATAGAAATGCAAGTGTAGA+AGG | - | chr7.3:75239336-75239355 | None:intergenic | 35.0% | |
| GCATAGCATGTGTAGATAAA+AGG | - | chr7.3:75240980-75240999 | None:intergenic | 35.0% | |
| GTTCATGTCATAAAAGAGAC+TGG | - | chr7.3:75240444-75240463 | None:intergenic | 35.0% | |
| GTTCTCAGTAGTTGAAATCT+TGG | + | chr7.3:75240730-75240749 | MS.gene062424:intron | 35.0% | |
| TAATCATGTTGGGGAACATA+TGG | + | chr7.3:75239668-75239687 | MS.gene062424:CDS | 35.0% | |
| TACAAACAAACCATTCAAGG+TGG | - | chr7.3:75239540-75239559 | None:intergenic | 35.0% | |
| TATGAAGCAGCTAAACAAGA+GGG | + | chr7.3:75241057-75241076 | MS.gene062424:CDS | 35.0% | |
| TATTACAGATGGAATGTTGC+AGG | + | chr7.3:75239991-75240010 | MS.gene062424:CDS | 35.0% | |
| TCAGAAAACAATGGAGCAAA+TGG | + | chr7.3:75241849-75241868 | MS.gene062424:intron | 35.0% | |
| TGGCAAAGAATTCATTAGAG+AGG | + | chr7.3:75241233-75241252 | MS.gene062424:intron | 35.0% | |
| TGTATATGACAAGATGCAAC+AGG | - | chr7.3:75240278-75240297 | None:intergenic | 35.0% | |
| TTATGAAGCAGCTAAACAAG+AGG | + | chr7.3:75241056-75241075 | MS.gene062424:CDS | 35.0% | |
| TTCTTAACCTAAAGATCGGT+AGG | - | chr7.3:75239248-75239267 | None:intergenic | 35.0% | |
| TTGAATGAACTGATGCAATG+TGG | + | chr7.3:75241593-75241612 | MS.gene062424:intron | 35.0% | |
| ! | AACAATATGTACCTTTTCCC+AGG | + | chr7.3:75239853-75239872 | MS.gene062424:CDS | 35.0% |
| ! | ACAATATGTACCTTTTCCCA+GGG | + | chr7.3:75239854-75239873 | MS.gene062424:CDS | 35.0% |
| ! | ATGAACTTAAGTTGTGACTC+AGG | - | chr7.3:75241475-75241494 | None:intergenic | 35.0% |
| ! | TACCGATCTTTAGGTTAAGA+AGG | + | chr7.3:75239247-75239266 | MS.gene062424:intron | 35.0% |
| ! | TTTGAAATCGCGTCATTCAA+AGG | + | chr7.3:75241554-75241573 | MS.gene062424:intron | 35.0% |
| ! | TTTTCTGCAGATCAAGCTTT+AGG | + | chr7.3:75239048-75239067 | MS.gene062424:CDS | 35.0% |
| !! | AAGAAGCGCTGTAAAACTTA+TGG | - | chr7.3:75240157-75240176 | None:intergenic | 35.0% |
| !!! | TGTTGGTGGTATTTTCAACA+AGG | + | chr7.3:75239301-75239320 | MS.gene062424:CDS | 35.0% |
| ACTGTGTTAGATGGTTAAGG+GGG | + | chr7.3:75241890-75241909 | MS.gene062424:CDS | 40.0% | |
| AGATTCAGTTCAGGTGCTTA+AGG | + | chr7.3:75239463-75239482 | MS.gene062424:intron | 40.0% | |
| ATGAAGCAGCTAAACAAGAG+GGG | + | chr7.3:75241058-75241077 | MS.gene062424:CDS | 40.0% | |
| ATGCATTGCAGACAGAAACT+TGG | + | chr7.3:75241700-75241719 | MS.gene062424:intron | 40.0% | |
| ATGCATTGCTGACAGAAACT+TGG | + | chr7.3:75241658-75241677 | MS.gene062424:intron | 40.0% | |
| ATGTCTAATCCCACCTTGAA+TGG | + | chr7.3:75239527-75239546 | MS.gene062424:CDS | 40.0% | |
| ATTCAAGGTGGGATTAGACA+TGG | - | chr7.3:75239528-75239547 | None:intergenic | 40.0% | |
| ATTTACCTGTAACCAAGCCT+CGG | - | chr7.3:75241500-75241519 | None:intergenic | 40.0% | |
| GAAAACAATGGAGCAAATGG+TGG | + | chr7.3:75241852-75241871 | MS.gene062424:intron | 40.0% | |
| GACATGTTTGCAAGTTCTCT+AGG | - | chr7.3:75240878-75240897 | None:intergenic | 40.0% | |
| GACTTCAAGAGACATAGATG+TGG | - | chr7.3:75240941-75240960 | None:intergenic | 40.0% | |
| GGTGCTCATCTTATTACAGA+TGG | + | chr7.3:75239980-75239999 | MS.gene062424:CDS | 40.0% | |
| TAACAGCCTTGCTTCATACA+TGG | + | chr7.3:75240323-75240342 | MS.gene062424:intron | 40.0% | |
| TATCTACACATGCTATGCCT+TGG | + | chr7.3:75240982-75241001 | MS.gene062424:CDS | 40.0% | |
| TCGGTAGGTTCAACAAGTAA+AGG | - | chr7.3:75239233-75239252 | None:intergenic | 40.0% | |
| TGAGAGATACCTTGGTATCA+AGG | - | chr7.3:75241767-75241786 | None:intergenic | 40.0% | |
| TGTTGAACCTACCGATCTTT+AGG | + | chr7.3:75239238-75239257 | MS.gene062424:intron | 40.0% | |
| TTAAGTTCATAACCGAGGCT+TGG | + | chr7.3:75241485-75241504 | MS.gene062424:CDS | 40.0% | |
| TTAGACATGGCAAAGATAGC+AGG | - | chr7.3:75239515-75239534 | None:intergenic | 40.0% | |
| ! | AAAAAAGCATGCCATACCCT+GGG | - | chr7.3:75239873-75239892 | None:intergenic | 40.0% |
| ! | AAAAGTACACAACCACACAC+TGG | + | chr7.3:75241736-75241755 | MS.gene062424:CDS | 40.0% |
| ! | ACTTAAGTTGTGACTCAGGT+TGG | - | chr7.3:75241471-75241490 | None:intergenic | 40.0% |
| ! | GCCGAGGAAGATATTTTACA+AGG | + | chr7.3:75240345-75240364 | MS.gene062424:CDS | 40.0% |
| ! | TGGTGGTATTTTCAACAAGG+AGG | + | chr7.3:75239304-75239323 | MS.gene062424:CDS | 40.0% |
| !! | GATAGCAGGCTTTGTTGAAA+CGG | - | chr7.3:75239501-75239520 | None:intergenic | 40.0% |
| AGCAGCAGTTGAAGAAGATC+TGG | + | chr7.3:75240829-75240848 | MS.gene062424:CDS | 45.0% | |
| AGCATCAATAGCAGTGCACT+CGG | - | chr7.3:75239646-75239665 | None:intergenic | 45.0% | |
| AGTTGAAGAAGATCTGGCAG+AGG | + | chr7.3:75240835-75240854 | MS.gene062424:CDS | 45.0% | |
| ATCAAGGAGATACCAGTGTG+TGG | - | chr7.3:75241751-75241770 | None:intergenic | 45.0% | |
| ATGCTGCAGTACGCAAAGTA+GGG | - | chr7.3:75240770-75240789 | None:intergenic | 45.0% | |
| CTGGTATCTCCTTGATACCA+AGG | + | chr7.3:75241755-75241774 | MS.gene062424:CDS | 45.0% | |
| GAACATATGGTGTTTGCCAG+TGG | + | chr7.3:75239681-75239700 | MS.gene062424:CDS | 45.0% | |
| GTTGAAGAAGATCTGGCAGA+GGG | + | chr7.3:75240836-75240855 | MS.gene062424:CDS | 45.0% | |
| TATGCTGCAGTACGCAAAGT+AGG | - | chr7.3:75240771-75240790 | None:intergenic | 45.0% | |
| TGAAGCAGCTAAACAAGAGG+GGG | + | chr7.3:75241059-75241078 | MS.gene062424:CDS | 45.0% | |
| ! | ATGTACCTTTTCCCAGGGTA+TGG | + | chr7.3:75239859-75239878 | MS.gene062424:intron | 45.0% |
| ! | ATTTTCGAAAGGGCTTCCAC+TGG | - | chr7.3:75239700-75239719 | None:intergenic | 45.0% |
| ! | CAAAAAAGCATGCCATACCC+TGG | - | chr7.3:75239874-75239893 | None:intergenic | 45.0% |
| !! | TGTGTAGGTGATGGGAAAGT+AGG | + | chr7.3:75239814-75239833 | MS.gene062424:intron | 45.0% |
| !!! | CAGGGTATGGCATGCTTTTT+TGG | + | chr7.3:75239872-75239891 | MS.gene062424:intron | 45.0% |
| AATCGCCAGTCCTTTCACCA+TGG | - | chr7.3:75241020-75241039 | None:intergenic | 50.0% | |
| CACCAACACCAGACAAACCT+AGG | - | chr7.3:75239289-75239308 | None:intergenic | 50.0% | |
| CATACGAGATGTTACCGCAG+AGG | + | chr7.3:75240787-75240806 | MS.gene062424:CDS | 50.0% | |
| CATGGTCAGACCATGGTGAA+AGG | + | chr7.3:75241007-75241026 | MS.gene062424:CDS | 50.0% | |
| CTCCTAGGTTTGTCTGGTGT+TGG | + | chr7.3:75239284-75239303 | MS.gene062424:intron | 50.0% | |
| TCAGACCATGGTGAAAGGAC+TGG | + | chr7.3:75241012-75241031 | MS.gene062424:CDS | 50.0% | |
| ! | ACATGCTATGCCTTGGTGCA+TGG | + | chr7.3:75240989-75241008 | MS.gene062424:CDS | 50.0% |
| ! | CATAACCGAGGCTTGGTTAC+AGG | + | chr7.3:75241492-75241511 | MS.gene062424:CDS | 50.0% |
| ! | CTAGGTTTGTCTGGTGTTGG+TGG | + | chr7.3:75239287-75239306 | MS.gene062424:intron | 50.0% |
| AGCAGCTAAACAAGAGGGGG+TGG | + | chr7.3:75241062-75241081 | MS.gene062424:CDS | 55.0% | |
| CACGTGCTCCTAGGTTTGTC+TGG | + | chr7.3:75239278-75239297 | MS.gene062424:intron | 55.0% | |
| CATGGTCTGACCATGCACCA+AGG | - | chr7.3:75241002-75241021 | None:intergenic | 55.0% | |
| CCTCGGCCATGTATGAAGCA+AGG | - | chr7.3:75240332-75240351 | None:intergenic | 55.0% | |
| CCTTGCTTCATACATGGCCG+AGG | + | chr7.3:75240329-75240348 | MS.gene062424:CDS | 55.0% | |
| CGAGATGTTACCGCAGAGGT+TGG | + | chr7.3:75240791-75240810 | MS.gene062424:CDS | 55.0% | |
| GAAGATCTGGCAGAGGGACA+TGG | + | chr7.3:75240842-75240861 | MS.gene062424:CDS | 55.0% | |
| GCATGCCATACCCTGGGAAA+AGG | - | chr7.3:75239867-75239886 | None:intergenic | 55.0% | |
| GGGTTGGGAACACTTCTGTC+AGG | + | chr7.3:75239959-75239978 | MS.gene062424:CDS | 55.0% | |
| GTTAAGCCACACGTGCTCCT+AGG | + | chr7.3:75239269-75239288 | MS.gene062424:intron | 55.0% | |
| TGTTGCAGGCAGCTGCTGAA+TGG | + | chr7.3:75240005-75240024 | MS.gene062424:CDS | 55.0% | |
| ! | CAGAGGGACATGGTGATGTC+TGG | + | chr7.3:75240852-75240871 | MS.gene062424:CDS | 55.0% |
| ! | CTTGGTGCATGGTCAGACCA+TGG | + | chr7.3:75241000-75241019 | MS.gene062424:CDS | 55.0% |
| ! | GACAAACCTAGGAGCACGTG+TGG | - | chr7.3:75239278-75239297 | None:intergenic | 55.0% |
| CACTGCAGCTCCAACCTCTG+CGG | - | chr7.3:75240804-75240823 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 75239021 | 75241954 | 75239021 | ID=MS.gene062424 |
| chr7.3 | mRNA | 75239021 | 75241954 | 75239021 | ID=MS.gene062424.t1;Parent=MS.gene062424 |
| chr7.3 | exon | 75239021 | 75239069 | 75239021 | ID=MS.gene062424.t1.exon1;Parent=MS.gene062424.t1 |
| chr7.3 | CDS | 75239021 | 75239069 | 75239021 | ID=cds.MS.gene062424.t1;Parent=MS.gene062424.t1 |
| chr7.3 | exon | 75239291 | 75239325 | 75239291 | ID=MS.gene062424.t1.exon2;Parent=MS.gene062424.t1 |
| chr7.3 | CDS | 75239291 | 75239325 | 75239291 | ID=cds.MS.gene062424.t1;Parent=MS.gene062424.t1 |
| chr7.3 | exon | 75239476 | 75239548 | 75239476 | ID=MS.gene062424.t1.exon3;Parent=MS.gene062424.t1 |
| chr7.3 | CDS | 75239476 | 75239548 | 75239476 | ID=cds.MS.gene062424.t1;Parent=MS.gene062424.t1 |
| chr7.3 | exon | 75239643 | 75239729 | 75239643 | ID=MS.gene062424.t1.exon4;Parent=MS.gene062424.t1 |
| chr7.3 | CDS | 75239643 | 75239729 | 75239643 | ID=cds.MS.gene062424.t1;Parent=MS.gene062424.t1 |
| chr7.3 | exon | 75239821 | 75239875 | 75239821 | ID=MS.gene062424.t1.exon5;Parent=MS.gene062424.t1 |
| chr7.3 | CDS | 75239821 | 75239875 | 75239821 | ID=cds.MS.gene062424.t1;Parent=MS.gene062424.t1 |
| chr7.3 | exon | 75239955 | 75240026 | 75239955 | ID=MS.gene062424.t1.exon6;Parent=MS.gene062424.t1 |
| chr7.3 | CDS | 75239955 | 75240026 | 75239955 | ID=cds.MS.gene062424.t1;Parent=MS.gene062424.t1 |
| chr7.3 | exon | 75240329 | 75240391 | 75240329 | ID=MS.gene062424.t1.exon7;Parent=MS.gene062424.t1 |
| chr7.3 | CDS | 75240329 | 75240391 | 75240329 | ID=cds.MS.gene062424.t1;Parent=MS.gene062424.t1 |
| chr7.3 | exon | 75240787 | 75240901 | 75240787 | ID=MS.gene062424.t1.exon8;Parent=MS.gene062424.t1 |
| chr7.3 | CDS | 75240787 | 75240901 | 75240787 | ID=cds.MS.gene062424.t1;Parent=MS.gene062424.t1 |
| chr7.3 | exon | 75240973 | 75241083 | 75240973 | ID=MS.gene062424.t1.exon9;Parent=MS.gene062424.t1 |
| chr7.3 | CDS | 75240973 | 75241083 | 75240973 | ID=cds.MS.gene062424.t1;Parent=MS.gene062424.t1 |
| chr7.3 | exon | 75241442 | 75241513 | 75241442 | ID=MS.gene062424.t1.exon10;Parent=MS.gene062424.t1 |
| chr7.3 | CDS | 75241442 | 75241513 | 75241442 | ID=cds.MS.gene062424.t1;Parent=MS.gene062424.t1 |
| chr7.3 | exon | 75241711 | 75241776 | 75241711 | ID=MS.gene062424.t1.exon11;Parent=MS.gene062424.t1 |
| chr7.3 | CDS | 75241711 | 75241776 | 75241711 | ID=cds.MS.gene062424.t1;Parent=MS.gene062424.t1 |
| chr7.3 | exon | 75241853 | 75241954 | 75241853 | ID=MS.gene062424.t1.exon12;Parent=MS.gene062424.t1 |
| chr7.3 | CDS | 75241853 | 75241954 | 75241853 | ID=cds.MS.gene062424.t1;Parent=MS.gene062424.t1 |
| Gene Sequence |
| Protein sequence |
