Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06243.t1 | RHN70100.1 | 98.8 | 252 | 3 | 0 | 1 | 252 | 63 | 314 | 7.70E-133 | 483.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06243.t1 | B8BKP4 | 63.8 | 210 | 75 | 1 | 9 | 218 | 11 | 219 | 1.8e-69 | 264.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06243.t1 | G7J3C8 | 98.8 | 252 | 3 | 0 | 1 | 252 | 1 | 252 | 5.6e-133 | 483.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050638 | MS.gene06243 | 0.819393 | 1.19E-52 | -1.69E-46 |
| MS.gene055519 | MS.gene06243 | 0.981941 | 7.88E-154 | -1.69E-46 |
| MS.gene060483 | MS.gene06243 | -0.802973 | 4.35E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06243.t1 | MTR_3g098910 | 97.078 | 308 | 8 | 1 | 1 | 307 | 1 | 308 | 0.0 | 611 |
| MS.gene06243.t1 | MTR_8g096310 | 64.017 | 239 | 86 | 0 | 10 | 248 | 10 | 248 | 1.12e-114 | 332 |
| MS.gene06243.t1 | MTR_8g096320 | 52.321 | 237 | 108 | 3 | 1 | 233 | 1 | 236 | 5.69e-85 | 256 |
| MS.gene06243.t1 | MTR_7g405730 | 46.454 | 282 | 133 | 4 | 1 | 282 | 1 | 264 | 4.53e-81 | 246 |
| MS.gene06243.t1 | MTR_7g405710 | 52.941 | 238 | 107 | 2 | 1 | 238 | 1 | 233 | 5.72e-81 | 246 |
| MS.gene06243.t1 | MTR_5g067530 | 47.464 | 276 | 135 | 4 | 1 | 275 | 1 | 267 | 1.60e-79 | 243 |
| MS.gene06243.t1 | MTR_2g007890 | 43.537 | 294 | 147 | 5 | 1 | 294 | 4 | 278 | 1.91e-73 | 228 |
| MS.gene06243.t1 | MTR_7g007490 | 50.218 | 229 | 112 | 2 | 1 | 228 | 1 | 228 | 2.81e-71 | 221 |
| MS.gene06243.t1 | MTR_5g092600 | 46.250 | 240 | 123 | 3 | 12 | 247 | 13 | 250 | 1.53e-70 | 219 |
| MS.gene06243.t1 | MTR_3g098930 | 50.510 | 196 | 94 | 3 | 4 | 198 | 5 | 198 | 2.20e-63 | 199 |
| MS.gene06243.t1 | MTR_8g096320 | 49.451 | 182 | 87 | 3 | 56 | 233 | 1 | 181 | 9.36e-58 | 184 |
| MS.gene06243.t1 | MTR_2g436310 | 41.148 | 209 | 122 | 1 | 9 | 217 | 5 | 212 | 3.86e-49 | 164 |
| MS.gene06243.t1 | MTR_3g080990 | 36.179 | 246 | 150 | 5 | 11 | 252 | 10 | 252 | 8.74e-44 | 150 |
| MS.gene06243.t1 | MTR_3g089125 | 36.161 | 224 | 137 | 4 | 4 | 225 | 2 | 221 | 1.06e-41 | 145 |
| MS.gene06243.t1 | MTR_8g099730 | 33.465 | 254 | 160 | 5 | 1 | 251 | 9 | 256 | 1.93e-41 | 144 |
| MS.gene06243.t1 | MTR_1g028460 | 36.986 | 219 | 133 | 3 | 8 | 222 | 5 | 222 | 8.14e-41 | 142 |
| MS.gene06243.t1 | MTR_6g007633 | 37.333 | 225 | 135 | 4 | 4 | 223 | 3 | 226 | 1.02e-40 | 142 |
| MS.gene06243.t1 | MTR_6g007637 | 39.423 | 208 | 122 | 3 | 13 | 217 | 13 | 219 | 4.93e-40 | 140 |
| MS.gene06243.t1 | MTR_1g029380 | 37.220 | 223 | 130 | 4 | 10 | 228 | 6 | 222 | 7.39e-40 | 140 |
| MS.gene06243.t1 | MTR_6g007623 | 37.037 | 216 | 130 | 4 | 13 | 223 | 9 | 223 | 2.23e-38 | 135 |
| MS.gene06243.t1 | MTR_3g090950 | 36.255 | 251 | 146 | 9 | 8 | 250 | 5 | 249 | 9.93e-37 | 132 |
| MS.gene06243.t1 | MTR_3g090940 | 35.458 | 251 | 148 | 8 | 8 | 250 | 5 | 249 | 3.85e-36 | 130 |
| MS.gene06243.t1 | MTR_8g042490 | 36.967 | 211 | 125 | 3 | 11 | 217 | 16 | 222 | 4.27e-36 | 130 |
| MS.gene06243.t1 | MTR_4g106990 | 33.171 | 205 | 134 | 2 | 29 | 231 | 35 | 238 | 5.62e-34 | 124 |
| MS.gene06243.t1 | MTR_2g073190 | 34.562 | 217 | 138 | 2 | 11 | 225 | 16 | 230 | 3.85e-31 | 123 |
| MS.gene06243.t1 | MTR_8g099730 | 30.808 | 198 | 129 | 4 | 56 | 251 | 1 | 192 | 1.54e-25 | 100 |
| MS.gene06243.t1 | MTR_6g007610 | 28.372 | 215 | 135 | 5 | 13 | 213 | 12 | 221 | 1.09e-20 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06243.t1 | AT5G23660 | 55.686 | 255 | 93 | 3 | 5 | 259 | 7 | 241 | 1.85e-94 | 281 |
| MS.gene06243.t1 | AT5G50800 | 51.014 | 296 | 131 | 6 | 1 | 288 | 1 | 290 | 7.37e-94 | 280 |
| MS.gene06243.t1 | AT3G48740 | 50.534 | 281 | 125 | 4 | 9 | 281 | 11 | 285 | 2.02e-90 | 271 |
| MS.gene06243.t1 | AT4G25010 | 50.719 | 278 | 131 | 4 | 5 | 279 | 5 | 279 | 6.58e-89 | 267 |
| MS.gene06243.t1 | AT5G13170 | 45.695 | 302 | 149 | 6 | 1 | 302 | 4 | 290 | 1.77e-87 | 264 |
| MS.gene06243.t1 | AT5G50790 | 43.197 | 294 | 153 | 5 | 1 | 285 | 1 | 289 | 5.05e-81 | 247 |
| MS.gene06243.t1 | AT2G39060 | 42.972 | 249 | 122 | 2 | 8 | 237 | 8 | 255 | 3.48e-65 | 206 |
| MS.gene06243.t1 | AT4G15920 | 36.967 | 211 | 133 | 0 | 9 | 219 | 5 | 215 | 1.38e-51 | 170 |
| MS.gene06243.t1 | AT3G16690 | 37.220 | 223 | 138 | 2 | 2 | 223 | 33 | 254 | 2.90e-51 | 170 |
| MS.gene06243.t1 | AT3G16690 | 36.986 | 219 | 136 | 2 | 6 | 223 | 2 | 219 | 2.87e-50 | 166 |
| MS.gene06243.t1 | AT1G21460 | 40.408 | 245 | 130 | 6 | 12 | 254 | 8 | 238 | 1.45e-47 | 160 |
| MS.gene06243.t1 | AT4G10850 | 35.268 | 224 | 142 | 2 | 3 | 223 | 4 | 227 | 1.35e-43 | 150 |
| MS.gene06243.t1 | AT1G66770 | 32.489 | 237 | 158 | 1 | 13 | 247 | 14 | 250 | 1.55e-40 | 142 |
| MS.gene06243.t1 | AT5G40260 | 39.631 | 217 | 125 | 5 | 7 | 218 | 6 | 221 | 2.21e-39 | 139 |
| MS.gene06243.t1 | AT5G53190 | 31.119 | 286 | 160 | 8 | 8 | 284 | 5 | 262 | 3.19e-39 | 139 |
| MS.gene06243.t1 | AT5G62850 | 33.790 | 219 | 139 | 4 | 1 | 216 | 1 | 216 | 5.66e-39 | 137 |
| MS.gene06243.t1 | AT1G21460 | 43.243 | 185 | 101 | 3 | 12 | 194 | 8 | 190 | 3.41e-37 | 132 |
| MS.gene06243.t1 | AT3G14770 | 35.945 | 217 | 131 | 4 | 13 | 226 | 18 | 229 | 8.99e-35 | 126 |
| MS.gene06243.t1 | AT3G28007 | 38.095 | 210 | 123 | 4 | 13 | 218 | 12 | 218 | 1.44e-34 | 126 |
| MS.gene06243.t1 | AT5G40260 | 40.838 | 191 | 107 | 5 | 7 | 192 | 6 | 195 | 2.74e-33 | 122 |
| MS.gene06243.t1 | AT5G62850 | 34.973 | 183 | 114 | 3 | 13 | 192 | 12 | 192 | 2.77e-32 | 119 |
| MS.gene06243.t1 | AT3G16690 | 32.812 | 192 | 113 | 3 | 6 | 182 | 2 | 192 | 3.20e-27 | 105 |
Find 58 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACATCATTTCTTTGCTTTC+TGG | 0.098038 | 3.1:+78800047 | MS.gene06243:CDS |
| AAGAAGAGTTTCACCCTTCT+TGG | 0.240770 | 3.1:-78800283 | None:intergenic |
| GCACTCACAATAATGCTTAA+AGG | 0.256613 | 3.1:-78800767 | None:intergenic |
| TACACGTACCCTAACTTTCT+TGG | 0.259331 | 3.1:-78800373 | None:intergenic |
| CTTACTGCCCCAAGAAAGTT+AGG | 0.295172 | 3.1:+78800364 | MS.gene06243:CDS |
| TCTTTCGCCTTTGGAGTTCT+AGG | 0.295855 | 3.1:+78800018 | MS.gene06243:CDS |
| ACACGTACCCTAACTTTCTT+GGG | 0.302349 | 3.1:-78800372 | None:intergenic |
| TTGATGAACTTTGTGGGATT+TGG | 0.311697 | 3.1:+78800641 | MS.gene06243:CDS |
| TATTGTGACTGTAGAGAAAA+AGG | 0.313551 | 3.1:+78801491 | MS.gene06243:CDS |
| AGTTTCACCCTTCTTGGTAT+AGG | 0.322134 | 3.1:-78800277 | None:intergenic |
| AACGTTGTGGGGTTAACATT+TGG | 0.325987 | 3.1:+78801306 | MS.gene06243:CDS |
| AGGAAGGAACTCTACACTTT+TGG | 0.334515 | 3.1:-78800922 | None:intergenic |
| TGGTAGCTTCTCATCAATTA+CGG | 0.338030 | 3.1:-78801373 | None:intergenic |
| CACTCACAATAATGCTTAAA+GGG | 0.349067 | 3.1:-78800766 | None:intergenic |
| AGTCATCTATCTTTCGCCTT+TGG | 0.350886 | 3.1:+78800009 | MS.gene06243:CDS |
| CACTATTTAGTGCAATGCTT+TGG | 0.369787 | 3.1:+78800244 | MS.gene06243:CDS |
| CACACAACCGAATGCATTGA+TGG | 0.370212 | 3.1:-78800310 | None:intergenic |
| GGTAGCTTCTCATCAATTAC+GGG | 0.374020 | 3.1:-78801372 | None:intergenic |
| GAAGGACGTATCAAGCTTCT+TGG | 0.381738 | 3.1:+78800704 | MS.gene06243:CDS |
| AATGTTAACCCCACAACGTT+CGG | 0.388997 | 3.1:-78801303 | None:intergenic |
| ACAATGTCTCCTTTATGTTC+TGG | 0.402350 | 3.1:-78801393 | None:intergenic |
| CTAAATAGTGCAGCCACATA+TGG | 0.415521 | 3.1:-78800231 | None:intergenic |
| CTTATCACCATCAATGCATT+CGG | 0.422646 | 3.1:+78800303 | MS.gene06243:CDS |
| AGGAGAAGTGAAAGTGGAAA+AGG | 0.437747 | 3.1:-78800942 | None:intergenic |
| ATGTTAACCCCACAACGTTC+GGG | 0.444928 | 3.1:-78801302 | None:intergenic |
| GGACAGCTCCCGAACGTTGT+GGG | 0.447921 | 3.1:+78801294 | MS.gene06243:intron |
| CAGCCACATATGGAATTGAT+TGG | 0.459983 | 3.1:-78800221 | None:intergenic |
| TGATGAGAATGAGAAGAAAC+AGG | 0.461226 | 3.1:+78801536 | MS.gene06243:CDS |
| TTACAAATTCGATAAAATGT+TGG | 0.461818 | 3.1:-78800177 | None:intergenic |
| TCCTCATAAGCGCGGTTATG+TGG | 0.463599 | 3.1:+78800964 | MS.gene06243:CDS |
| GATTGTGTTGATGAACTTTG+TGG | 0.471961 | 3.1:+78800634 | MS.gene06243:CDS |
| ATGAGGAGGAGAAGTGAAAG+TGG | 0.474274 | 3.1:-78800948 | None:intergenic |
| TTTCCAATCAATTCCATATG+TGG | 0.478701 | 3.1:+78800218 | MS.gene06243:CDS |
| GCCACATAACCGCGCTTATG+AGG | 0.482912 | 3.1:-78800965 | None:intergenic |
| GAGAAGCTACCAGAACATAA+AGG | 0.487420 | 3.1:+78801384 | MS.gene06243:CDS |
| GCGGTTATGTGGCTGTTGTA+TGG | 0.506943 | 3.1:+78800975 | MS.gene06243:CDS |
| TGGACAGCTCCCGAACGTTG+TGG | 0.525233 | 3.1:+78801293 | MS.gene06243:intron |
| AAAACAGAAGAGAAGGTTAG+TGG | 0.526127 | 3.1:+78801618 | MS.gene06243:CDS |
| TTACAGTAACATAGATATCT+CGG | 0.536034 | 3.1:-78801007 | None:intergenic |
| ATTGTGTTGATGAACTTTGT+GGG | 0.543350 | 3.1:+78800635 | MS.gene06243:CDS |
| GACGTATCAAGCTTCTTGGA+TGG | 0.557609 | 3.1:+78800708 | MS.gene06243:CDS |
| TATCAACAAAACAGAAGAGA+AGG | 0.559044 | 3.1:+78801611 | MS.gene06243:CDS |
| TTCCTAGCAAAACAAGAAGA+AGG | 0.574175 | 3.1:+78800686 | MS.gene06243:CDS |
| TGTAAGAAGAAATCAACAGA+AGG | 0.576661 | 3.1:+78800195 | MS.gene06243:CDS |
| GACAGCTCCCGAACGTTGTG+GGG | 0.582179 | 3.1:+78801295 | MS.gene06243:intron |
| TTATGTAGATGTCAACATTG+AGG | 0.602218 | 3.1:+78800609 | MS.gene06243:intron |
| GAAGTGAAAGTGGAAAAGGA+AGG | 0.605323 | 3.1:-78800938 | None:intergenic |
| GAAAGATAGATGACTGTGGT+GGG | 0.607987 | 3.1:-78800001 | None:intergenic |
| CGAAAGATAGATGACTGTGG+TGG | 0.609394 | 3.1:-78800002 | None:intergenic |
| ATGACTGTGGTGGGACGACA+TGG | 0.619238 | 3.1:-78799992 | None:intergenic |
| ACATAACCGCGCTTATGAGG+AGG | 0.633283 | 3.1:-78800962 | None:intergenic |
| TTACTGCCCCAAGAAAGTTA+GGG | 0.638169 | 3.1:+78800365 | MS.gene06243:CDS |
| ACTTCTCCTCCTCATAAGCG+CGG | 0.645264 | 3.1:+78800956 | MS.gene06243:CDS |
| AATGTTGCCTAGAACTCCAA+AGG | 0.654062 | 3.1:-78800025 | None:intergenic |
| CACGTACCCTAACTTTCTTG+GGG | 0.660388 | 3.1:-78800371 | None:intergenic |
| ACTCACAATAATGCTTAAAG+GGG | 0.675502 | 3.1:-78800765 | None:intergenic |
| AGTAACTCAAGACAAAACAA+AGG | 0.690695 | 3.1:+78801563 | MS.gene06243:CDS |
| AGGCGAAAGATAGATGACTG+TGG | 0.756668 | 3.1:-78800005 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATTAATGTTGATCA+TGG | - | chr3.1:78800578-78800597 | None:intergenic | 15.0% |
| !! | AAAATCAATACTACTAAATT+TGG | + | chr3.1:78801069-78801088 | MS.gene06243:intron | 15.0% |
| !! | AAATTTACAATTAAATGAAG+TGG | - | chr3.1:78800107-78800126 | None:intergenic | 15.0% |
| !! | CATTTGTATTAATTAATTTC+TGG | + | chr3.1:78801215-78801234 | MS.gene06243:intron | 15.0% |
| !!! | CAAAATCTTATGTTTTTTTA+TGG | + | chr3.1:78801273-78801292 | MS.gene06243:intron | 15.0% |
| !! | TTACAAATTCGATAAAATGT+TGG | - | chr3.1:78800180-78800199 | None:intergenic | 20.0% |
| ! | ATTATTCTTTCTACTTACAG+TGG | - | chr3.1:78800075-78800094 | None:intergenic | 25.0% |
| ! | ATTTAACATTCCAACAATGT+TGG | - | chr3.1:78800443-78800462 | None:intergenic | 25.0% |
| ! | GATGATTAAAATCATGCATA+TGG | - | chr3.1:78800880-78800899 | None:intergenic | 25.0% |
| ! | TTACAGTAACATAGATATCT+CGG | - | chr3.1:78801010-78801029 | None:intergenic | 25.0% |
| ! | TTTAACATTCCAACAATGTT+GGG | - | chr3.1:78800442-78800461 | None:intergenic | 25.0% |
| !!! | TAGTTGCTATTTTGTCTTTA+TGG | + | chr3.1:78801238-78801257 | MS.gene06243:intron | 25.0% |
| !!! | TTTTTTTTGACAAAGTTGCT+AGG | + | chr3.1:78800470-78800489 | MS.gene06243:intron | 25.0% |
| AAAAGCTAATTCTAGCATGT+CGG | - | chr3.1:78800808-78800827 | None:intergenic | 30.0% | |
| ACTCACAATAATGCTTAAAG+GGG | - | chr3.1:78800768-78800787 | None:intergenic | 30.0% | |
| AGTAACTCAAGACAAAACAA+AGG | + | chr3.1:78801563-78801582 | MS.gene06243:CDS | 30.0% | |
| CACTCACAATAATGCTTAAA+GGG | - | chr3.1:78800769-78800788 | None:intergenic | 30.0% | |
| TACATCATTTCTTTGCTTTC+TGG | + | chr3.1:78800047-78800066 | MS.gene06243:CDS | 30.0% | |
| TATCAACAAAACAGAAGAGA+AGG | + | chr3.1:78801611-78801630 | MS.gene06243:CDS | 30.0% | |
| TATTGTGACTGTAGAGAAAA+AGG | + | chr3.1:78801491-78801510 | MS.gene06243:CDS | 30.0% | |
| TGTAAGAAGAAATCAACAGA+AGG | + | chr3.1:78800195-78800214 | MS.gene06243:CDS | 30.0% | |
| TTATGTAGATGTCAACATTG+AGG | + | chr3.1:78800609-78800628 | MS.gene06243:intron | 30.0% | |
| TTTCCAATCAATTCCATATG+TGG | + | chr3.1:78800218-78800237 | MS.gene06243:CDS | 30.0% | |
| ! | ATTGTGTTGATGAACTTTGT+GGG | + | chr3.1:78800635-78800654 | MS.gene06243:CDS | 30.0% |
| ! | TTTTATGCCTATACCAAGAA+GGG | + | chr3.1:78800270-78800289 | MS.gene06243:CDS | 30.0% |
| !! | TTGTTTTGTCTTGAGTTACT+TGG | - | chr3.1:78801563-78801582 | None:intergenic | 30.0% |
| !!! | TCATCATTTGTTGTTTTGCT+TGG | - | chr3.1:78801447-78801466 | None:intergenic | 30.0% |
| AAAACAGAAGAGAAGGTTAG+TGG | + | chr3.1:78801618-78801637 | MS.gene06243:CDS | 35.0% | |
| ACAATGTCTCCTTTATGTTC+TGG | - | chr3.1:78801396-78801415 | None:intergenic | 35.0% | |
| AGTAAGTGACAAAAACTGCA+AGG | - | chr3.1:78800350-78800369 | None:intergenic | 35.0% | |
| CACTATTTAGTGCAATGCTT+TGG | + | chr3.1:78800244-78800263 | MS.gene06243:CDS | 35.0% | |
| CTTATCACCATCAATGCATT+CGG | + | chr3.1:78800303-78800322 | MS.gene06243:CDS | 35.0% | |
| GCACTCACAATAATGCTTAA+AGG | - | chr3.1:78800770-78800789 | None:intergenic | 35.0% | |
| TGATGAGAATGAGAAGAAAC+AGG | + | chr3.1:78801536-78801555 | MS.gene06243:CDS | 35.0% | |
| TGGTAGCTTCTCATCAATTA+CGG | - | chr3.1:78801376-78801395 | None:intergenic | 35.0% | |
| TTCCTAGCAAAACAAGAAGA+AGG | + | chr3.1:78800686-78800705 | MS.gene06243:CDS | 35.0% | |
| TTGATGAACTTTGTGGGATT+TGG | + | chr3.1:78800641-78800660 | MS.gene06243:CDS | 35.0% | |
| ! | GATTGTGTTGATGAACTTTG+TGG | + | chr3.1:78800634-78800653 | MS.gene06243:CDS | 35.0% |
| ! | GTTTTATGCCTATACCAAGA+AGG | + | chr3.1:78800269-78800288 | MS.gene06243:CDS | 35.0% |
| AACGTTGTGGGGTTAACATT+TGG | + | chr3.1:78801306-78801325 | MS.gene06243:CDS | 40.0% | |
| AAGAAGAGTTTCACCCTTCT+TGG | - | chr3.1:78800286-78800305 | None:intergenic | 40.0% | |
| AATGTTAACCCCACAACGTT+CGG | - | chr3.1:78801306-78801325 | None:intergenic | 40.0% | |
| AATGTTGCCTAGAACTCCAA+AGG | - | chr3.1:78800028-78800047 | None:intergenic | 40.0% | |
| ACACGTACCCTAACTTTCTT+GGG | - | chr3.1:78800375-78800394 | None:intergenic | 40.0% | |
| AGCTAAAGTCCCAACATTGT+TGG | + | chr3.1:78800430-78800449 | MS.gene06243:intron | 40.0% | |
| AGGAGAAGTGAAAGTGGAAA+AGG | - | chr3.1:78800945-78800964 | None:intergenic | 40.0% | |
| AGTCATCTATCTTTCGCCTT+TGG | + | chr3.1:78800009-78800028 | MS.gene06243:CDS | 40.0% | |
| AGTTTCACCCTTCTTGGTAT+AGG | - | chr3.1:78800280-78800299 | None:intergenic | 40.0% | |
| CAGCCACATATGGAATTGAT+TGG | - | chr3.1:78800224-78800243 | None:intergenic | 40.0% | |
| CTAAATAGTGCAGCCACATA+TGG | - | chr3.1:78800234-78800253 | None:intergenic | 40.0% | |
| GAAAGATAGATGACTGTGGT+GGG | - | chr3.1:78800004-78800023 | None:intergenic | 40.0% | |
| GAAGTGAAAGTGGAAAAGGA+AGG | - | chr3.1:78800941-78800960 | None:intergenic | 40.0% | |
| GAGAAGCTACCAGAACATAA+AGG | + | chr3.1:78801384-78801403 | MS.gene06243:CDS | 40.0% | |
| GGTAGCTTCTCATCAATTAC+GGG | - | chr3.1:78801375-78801394 | None:intergenic | 40.0% | |
| TACACGTACCCTAACTTTCT+TGG | - | chr3.1:78800376-78800395 | None:intergenic | 40.0% | |
| TTACTGCCCCAAGAAAGTTA+GGG | + | chr3.1:78800365-78800384 | MS.gene06243:CDS | 40.0% | |
| ! | AGGAAGGAACTCTACACTTT+TGG | - | chr3.1:78800925-78800944 | None:intergenic | 40.0% |
| !!! | GTCCTTCTTCTTGTTTTGCT+AGG | - | chr3.1:78800691-78800710 | None:intergenic | 40.0% |
| AGGCGAAAGATAGATGACTG+TGG | - | chr3.1:78800008-78800027 | None:intergenic | 45.0% | |
| ATGAGGAGGAGAAGTGAAAG+TGG | - | chr3.1:78800951-78800970 | None:intergenic | 45.0% | |
| ATGTTAACCCCACAACGTTC+GGG | - | chr3.1:78801305-78801324 | None:intergenic | 45.0% | |
| CACACAACCGAATGCATTGA+TGG | - | chr3.1:78800313-78800332 | None:intergenic | 45.0% | |
| CACGTACCCTAACTTTCTTG+GGG | - | chr3.1:78800374-78800393 | None:intergenic | 45.0% | |
| CGAAAGATAGATGACTGTGG+TGG | - | chr3.1:78800005-78800024 | None:intergenic | 45.0% | |
| CTTACTGCCCCAAGAAAGTT+AGG | + | chr3.1:78800364-78800383 | MS.gene06243:CDS | 45.0% | |
| GAAGGACGTATCAAGCTTCT+TGG | + | chr3.1:78800704-78800723 | MS.gene06243:CDS | 45.0% | |
| GACGTATCAAGCTTCTTGGA+TGG | + | chr3.1:78800708-78800727 | MS.gene06243:CDS | 45.0% | |
| TGCGAATAACAACTCTCTGC+AGG | - | chr3.1:78800902-78800921 | None:intergenic | 45.0% | |
| !! | TCTTTCGCCTTTGGAGTTCT+AGG | + | chr3.1:78800018-78800037 | MS.gene06243:CDS | 45.0% |
| ACATAACCGCGCTTATGAGG+AGG | - | chr3.1:78800965-78800984 | None:intergenic | 50.0% | |
| ACTTCTCCTCCTCATAAGCG+CGG | + | chr3.1:78800956-78800975 | MS.gene06243:CDS | 50.0% | |
| GCGGTTATGTGGCTGTTGTA+TGG | + | chr3.1:78800975-78800994 | MS.gene06243:CDS | 50.0% | |
| TCCTCATAAGCGCGGTTATG+TGG | + | chr3.1:78800964-78800983 | MS.gene06243:CDS | 50.0% | |
| GCCACATAACCGCGCTTATG+AGG | - | chr3.1:78800968-78800987 | None:intergenic | 55.0% | |
| GACAGCTCCCGAACGTTGTG+GGG | + | chr3.1:78801295-78801314 | MS.gene06243:intron | 60.0% | |
| GGACAGCTCCCGAACGTTGT+GGG | + | chr3.1:78801294-78801313 | MS.gene06243:intron | 60.0% | |
| TGGACAGCTCCCGAACGTTG+TGG | + | chr3.1:78801293-78801312 | MS.gene06243:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 78799994 | 78801644 | 78799994 | ID=MS.gene06243 |
| chr3.1 | mRNA | 78799994 | 78801644 | 78799994 | ID=MS.gene06243.t1;Parent=MS.gene06243 |
| chr3.1 | exon | 78799994 | 78800076 | 78799994 | ID=MS.gene06243.t1.exon1;Parent=MS.gene06243.t1 |
| chr3.1 | CDS | 78799994 | 78800076 | 78799994 | ID=cds.MS.gene06243.t1;Parent=MS.gene06243.t1 |
| chr3.1 | exon | 78800176 | 78800386 | 78800176 | ID=MS.gene06243.t1.exon2;Parent=MS.gene06243.t1 |
| chr3.1 | CDS | 78800176 | 78800386 | 78800176 | ID=cds.MS.gene06243.t1;Parent=MS.gene06243.t1 |
| chr3.1 | exon | 78800617 | 78800781 | 78800617 | ID=MS.gene06243.t1.exon3;Parent=MS.gene06243.t1 |
| chr3.1 | CDS | 78800617 | 78800781 | 78800617 | ID=cds.MS.gene06243.t1;Parent=MS.gene06243.t1 |
| chr3.1 | exon | 78800906 | 78801025 | 78800906 | ID=MS.gene06243.t1.exon4;Parent=MS.gene06243.t1 |
| chr3.1 | CDS | 78800906 | 78801025 | 78800906 | ID=cds.MS.gene06243.t1;Parent=MS.gene06243.t1 |
| chr3.1 | exon | 78801300 | 78801644 | 78801300 | ID=MS.gene06243.t1.exon5;Parent=MS.gene06243.t1 |
| chr3.1 | CDS | 78801300 | 78801644 | 78801300 | ID=cds.MS.gene06243.t1;Parent=MS.gene06243.t1 |
| Gene Sequence |
| Protein sequence |
