Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060483.t1 | XP_013444548.1 | 100 | 60 | 0 | 0 | 1 | 60 | 1 | 60 | 7.90E-24 | 119.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060483.t1 | Q8LCW9 | 61.7 | 60 | 23 | 0 | 2 | 61 | 3 | 62 | 6.1e-17 | 88.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060483.t1 | I3S0D9 | 100.0 | 60 | 0 | 0 | 1 | 60 | 1 | 60 | 5.7e-24 | 119.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene060483 | 0.80826 | 3.38E-50 | -1.69E-46 |
| MS.gene049361 | MS.gene060483 | 0.844416 | 7.67E-59 | -1.69E-46 |
| MS.gene049387 | MS.gene060483 | 0.852767 | 3.72E-61 | -1.69E-46 |
| MS.gene050134 | MS.gene060483 | 0.887601 | 1.24E-72 | -1.69E-46 |
| MS.gene050638 | MS.gene060483 | -0.826031 | 3.39E-54 | -1.69E-46 |
| MS.gene050791 | MS.gene060483 | 0.847905 | 8.60E-60 | -1.69E-46 |
| MS.gene051925 | MS.gene060483 | 0.822444 | 2.36E-53 | -1.69E-46 |
| MS.gene051984 | MS.gene060483 | 0.875233 | 3.62E-68 | -1.69E-46 |
| MS.gene052664 | MS.gene060483 | 0.835847 | 1.32E-56 | -1.69E-46 |
| MS.gene052666 | MS.gene060483 | 0.908694 | 1.29E-81 | -1.69E-46 |
| MS.gene053224 | MS.gene060483 | 0.855344 | 6.72E-62 | -1.69E-46 |
| MS.gene054624 | MS.gene060483 | 0.803299 | 3.72E-49 | -1.69E-46 |
| MS.gene057272 | MS.gene060483 | 0.863329 | 2.69E-64 | -1.69E-46 |
| MS.gene057321 | MS.gene060483 | 0.862548 | 4.69E-64 | -1.69E-46 |
| MS.gene057641 | MS.gene060483 | 0.856736 | 2.63E-62 | -1.69E-46 |
| MS.gene057643 | MS.gene060483 | 0.900737 | 5.43E-78 | -1.69E-46 |
| MS.gene059340 | MS.gene060483 | 0.851819 | 6.92E-61 | -1.69E-46 |
| MS.gene060483 | MS.gene06169 | 0.883177 | 5.60E-71 | -1.69E-46 |
| MS.gene060483 | MS.gene06243 | -0.802973 | 4.35E-49 | -1.69E-46 |
| MS.gene060483 | MS.gene06433 | 0.827175 | 1.81E-54 | -1.69E-46 |
| MS.gene060483 | MS.gene065917 | 0.80934 | 1.99E-50 | -1.69E-46 |
| MS.gene060483 | MS.gene06617 | 0.849132 | 3.93E-60 | -1.69E-46 |
| MS.gene060483 | MS.gene066811 | 0.851505 | 8.50E-61 | -1.69E-46 |
| MS.gene060483 | MS.gene067331 | 0.96627 | 1.07E-125 | -1.69E-46 |
| MS.gene060483 | MS.gene067809 | 0.824901 | 6.28E-54 | -1.69E-46 |
| MS.gene060483 | MS.gene06803 | 0.878175 | 3.47E-69 | -1.69E-46 |
| MS.gene060483 | MS.gene06833 | 0.849963 | 2.31E-60 | -1.69E-46 |
| MS.gene060483 | MS.gene06999 | 0.840431 | 8.73E-58 | -1.69E-46 |
| MS.gene060483 | MS.gene072093 | 0.864086 | 1.57E-64 | -1.69E-46 |
| MS.gene060483 | MS.gene07244 | 0.80141 | 9.12E-49 | -1.69E-46 |
| MS.gene060483 | MS.gene072503 | 0.802442 | 5.60E-49 | -1.69E-46 |
| MS.gene060483 | MS.gene072589 | 0.844467 | 7.42E-59 | -1.69E-46 |
| MS.gene060483 | MS.gene072591 | 0.830465 | 2.89E-55 | -1.69E-46 |
| MS.gene060483 | MS.gene072977 | 0.866514 | 2.70E-65 | -1.69E-46 |
| MS.gene060483 | MS.gene073358 | 0.850564 | 1.56E-60 | -1.69E-46 |
| MS.gene060483 | MS.gene074400 | 0.877101 | 8.23E-69 | -1.69E-46 |
| MS.gene060483 | MS.gene08205 | 0.801056 | 1.08E-48 | -1.69E-46 |
| MS.gene060483 | MS.gene08521 | 0.951935 | 7.11E-110 | -1.69E-46 |
| MS.gene060483 | MS.gene08869 | 0.893461 | 6.15E-75 | -1.69E-46 |
| MS.gene060483 | MS.gene08870 | 0.879768 | 9.51E-70 | -1.69E-46 |
| MS.gene060483 | MS.gene08871 | 0.877266 | 7.21E-69 | -1.69E-46 |
| MS.gene060483 | MS.gene09038 | 0.852104 | 5.74E-61 | -1.69E-46 |
| MS.gene060483 | MS.gene09204 | 0.853053 | 3.08E-61 | -1.69E-46 |
| MS.gene060483 | MS.gene09761 | 0.833383 | 5.51E-56 | -1.69E-46 |
| MS.gene060483 | MS.gene09779 | 0.834898 | 2.30E-56 | -1.69E-46 |
| MS.gene060483 | MS.gene09780 | 0.843054 | 1.77E-58 | -1.69E-46 |
| MS.gene060483 | MS.gene20153 | 0.82482 | 6.56E-54 | -1.69E-46 |
| MS.gene060483 | MS.gene22310 | -0.810886 | 9.22E-51 | -1.69E-46 |
| MS.gene060483 | MS.gene22784 | 0.826637 | 2.43E-54 | -1.69E-46 |
| MS.gene060483 | MS.gene22805 | -0.823461 | 1.37E-53 | -1.69E-46 |
| MS.gene060483 | MS.gene23031 | 0.833651 | 4.72E-56 | -1.69E-46 |
| MS.gene060483 | MS.gene23303 | 0.857928 | 1.17E-62 | -1.69E-46 |
| MS.gene060483 | MS.gene23314 | 0.842927 | 1.92E-58 | -1.69E-46 |
| MS.gene060483 | MS.gene24232 | 0.817663 | 2.93E-52 | -1.69E-46 |
| MS.gene060483 | MS.gene24639 | 0.85571 | 5.25E-62 | -1.69E-46 |
| MS.gene060483 | MS.gene25236 | 0.852099 | 5.76E-61 | -1.69E-46 |
| MS.gene060483 | MS.gene25240 | 0.815753 | 7.87E-52 | -1.69E-46 |
| MS.gene060483 | MS.gene25639 | 0.850394 | 1.75E-60 | -1.69E-46 |
| MS.gene060483 | MS.gene25649 | 0.813502 | 2.48E-51 | -1.69E-46 |
| MS.gene060483 | MS.gene25903 | 0.90339 | 3.65E-79 | -1.69E-46 |
| MS.gene060483 | MS.gene26343 | 0.844211 | 8.70E-59 | -1.69E-46 |
| MS.gene060483 | MS.gene26620 | 0.803921 | 2.77E-49 | -1.69E-46 |
| MS.gene060483 | MS.gene26707 | 0.830211 | 3.34E-55 | -1.69E-46 |
| MS.gene060483 | MS.gene26792 | 0.80069 | 1.28E-48 | -1.69E-46 |
| MS.gene060483 | MS.gene27003 | 0.833123 | 6.39E-56 | -1.69E-46 |
| MS.gene060483 | MS.gene27265 | 0.849607 | 2.90E-60 | -1.69E-46 |
| MS.gene060483 | MS.gene28147 | 0.852249 | 5.22E-61 | -1.69E-46 |
| MS.gene060483 | MS.gene30990 | 0.836866 | 7.28E-57 | -1.69E-46 |
| MS.gene060483 | MS.gene31039 | 0.800706 | 1.27E-48 | -1.69E-46 |
| MS.gene060483 | MS.gene31056 | 0.806841 | 6.76E-50 | -1.69E-46 |
| MS.gene060483 | MS.gene32591 | 0.825181 | 5.39E-54 | -1.69E-46 |
| MS.gene060483 | MS.gene34372 | 0.825846 | 3.75E-54 | -1.69E-46 |
| MS.gene060483 | MS.gene38035 | 0.858446 | 8.19E-63 | -1.69E-46 |
| MS.gene060483 | MS.gene38222 | 0.825082 | 5.69E-54 | -1.69E-46 |
| MS.gene060483 | MS.gene40321 | 0.820633 | 6.19E-53 | -1.69E-46 |
| MS.gene060483 | MS.gene41726 | 0.821662 | 3.58E-53 | -1.69E-46 |
| MS.gene060483 | MS.gene43038 | 0.823491 | 1.35E-53 | -1.69E-46 |
| MS.gene060483 | MS.gene43112 | 0.802443 | 5.60E-49 | -1.69E-46 |
| MS.gene060483 | MS.gene43711 | 0.81013 | 1.34E-50 | -1.69E-46 |
| MS.gene060483 | MS.gene46387 | 0.823512 | 1.33E-53 | -1.69E-46 |
| MS.gene060483 | MS.gene46903 | 0.800949 | 1.13E-48 | -1.69E-46 |
| MS.gene060483 | MS.gene46907 | 0.830308 | 3.16E-55 | -1.69E-46 |
| MS.gene060483 | MS.gene47371 | 0.801104 | 1.05E-48 | -1.69E-46 |
| MS.gene060483 | MS.gene50638 | -0.817177 | 3.77E-52 | -1.69E-46 |
| MS.gene060483 | MS.gene50640 | 0.882638 | 8.81E-71 | -1.69E-46 |
| MS.gene060483 | MS.gene50744 | 0.849477 | 3.15E-60 | -1.69E-46 |
| MS.gene060483 | MS.gene50756 | 0.89715 | 1.86E-76 | -1.69E-46 |
| MS.gene060483 | MS.gene50758 | 0.868115 | 8.30E-66 | -1.69E-46 |
| MS.gene060483 | MS.gene51868 | 0.844801 | 6.04E-59 | -1.69E-46 |
| MS.gene060483 | MS.gene52415 | 0.860451 | 2.05E-63 | -1.69E-46 |
| MS.gene060483 | MS.gene52738 | 0.829219 | 5.82E-55 | -1.69E-46 |
| MS.gene060483 | MS.gene55619 | 0.87301 | 2.05E-67 | -1.69E-46 |
| MS.gene060483 | MS.gene55890 | 0.902932 | 5.84E-79 | -1.69E-46 |
| MS.gene060483 | MS.gene58173 | 0.843666 | 1.22E-58 | -1.69E-46 |
| MS.gene060483 | MS.gene58497 | 0.814354 | 1.61E-51 | -1.69E-46 |
| MS.gene060483 | MS.gene59228 | 0.876168 | 1.73E-68 | -1.69E-46 |
| MS.gene060483 | MS.gene59230 | 0.847371 | 1.21E-59 | -1.69E-46 |
| MS.gene060483 | MS.gene59609 | 0.852378 | 4.80E-61 | -1.69E-46 |
| MS.gene060483 | MS.gene60693 | 0.801841 | 7.44E-49 | -1.69E-46 |
| MS.gene060483 | MS.gene61251 | 0.800641 | 1.31E-48 | -1.69E-46 |
| MS.gene060483 | MS.gene62561 | 0.818731 | 1.68E-52 | -1.69E-46 |
| MS.gene060483 | MS.gene62620 | 0.827986 | 1.16E-54 | -1.69E-46 |
| MS.gene060483 | MS.gene62683 | 0.809721 | 1.64E-50 | -1.69E-46 |
| MS.gene060483 | MS.gene62695 | 0.881203 | 2.92E-70 | -1.69E-46 |
| MS.gene060483 | MS.gene70316 | 0.877915 | 4.28E-69 | -1.69E-46 |
| MS.gene060483 | MS.gene70579 | 0.899942 | 1.20E-77 | -1.69E-46 |
| MS.gene060483 | MS.gene71957 | 0.843928 | 1.04E-58 | -1.69E-46 |
| MS.gene060483 | MS.gene72382 | 0.835502 | 1.62E-56 | -1.69E-46 |
| MS.gene060483 | MS.gene72401 | 0.808506 | 3.00E-50 | -1.69E-46 |
| MS.gene060483 | MS.gene73000 | 0.821655 | 3.60E-53 | -1.69E-46 |
| MS.gene060483 | MS.gene79284 | -0.8022 | 6.28E-49 | -1.69E-46 |
| MS.gene060483 | MS.gene79721 | 0.910466 | 1.81E-82 | -1.69E-46 |
| MS.gene060483 | MS.gene80210 | -0.809137 | 2.20E-50 | -1.69E-46 |
| MS.gene060483 | MS.gene80889 | 0.800994 | 1.11E-48 | -1.69E-46 |
| MS.gene060483 | MS.gene82009 | 0.93494 | 1.85E-96 | -1.69E-46 |
| MS.gene060483 | MS.gene82545 | 0.802944 | 4.41E-49 | -1.69E-46 |
| MS.gene060483 | MS.gene83175 | 0.842847 | 2.01E-58 | -1.69E-46 |
| MS.gene060483 | MS.gene88918 | 0.888877 | 4.00E-73 | -1.69E-46 |
| MS.gene060483 | MS.gene90945 | 0.813289 | 2.76E-51 | -1.69E-46 |
| MS.gene060483 | MS.gene92142 | 0.911115 | 8.76E-83 | -1.69E-46 |
| MS.gene060483 | MS.gene94930 | 0.862731 | 4.12E-64 | -1.69E-46 |
| MS.gene060483 | MS.gene95848 | 0.825306 | 5.04E-54 | -1.69E-46 |
| MS.gene060483 | MS.gene96194 | 0.843558 | 1.30E-58 | -1.69E-46 |
| MS.gene060483 | MS.gene96225 | 0.866491 | 2.74E-65 | -1.69E-46 |
| MS.gene060483 | MS.gene96776 | 0.801524 | 8.65E-49 | -1.69E-46 |
| MS.gene060483 | MS.gene96825 | 0.827721 | 1.34E-54 | -1.69E-46 |
| MS.gene060483 | MS.gene98171 | 0.889704 | 1.91E-73 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene060483 | MS.gene06617 | PPI |
| MS.gene060483 | MS.gene88792 | PPI |
| MS.gene44900 | MS.gene060483 | PPI |
| MS.gene82009 | MS.gene060483 | PPI |
| MS.gene073078 | MS.gene060483 | PPI |
| MS.gene060483 | MS.gene01091 | PPI |
| MS.gene009874 | MS.gene060483 | PPI |
| MS.gene060483 | MS.gene045633 | PPI |
| MS.gene002442 | MS.gene060483 | PPI |
| MS.gene060483 | MS.gene057237 | PPI |
| MS.gene060483 | MS.gene91826 | PPI |
| MS.gene060483 | MS.gene78764 | PPI |
| MS.gene060483 | MS.gene97876 | PPI |
| MS.gene060483 | MS.gene053952 | PPI |
| MS.gene060483 | MS.gene01425 | PPI |
| MS.gene042719 | MS.gene060483 | PPI |
| MS.gene013506 | MS.gene060483 | PPI |
| MS.gene060483 | MS.gene032942 | PPI |
| MS.gene060483 | MS.gene35379 | PPI |
| MS.gene060483 | MS.gene01952 | PPI |
| MS.gene43071 | MS.gene060483 | PPI |
| MS.gene060483 | MS.gene047578 | PPI |
| MS.gene08521 | MS.gene060483 | PPI |
| MS.gene06833 | MS.gene060483 | PPI |
| MS.gene067331 | MS.gene060483 | PPI |
| MS.gene76615 | MS.gene060483 | PPI |
| MS.gene069339 | MS.gene060483 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060483.t1 | MTR_8g024350 | 98.148 | 108 | 2 | 0 | 1 | 108 | 1 | 108 | 1.26e-72 | 211 |
| MS.gene060483.t1 | MTR_3g092600 | 60.000 | 110 | 42 | 1 | 1 | 108 | 1 | 110 | 4.73e-29 | 101 |
| MS.gene060483.t1 | MTR_2g066750 | 60.909 | 110 | 41 | 1 | 1 | 108 | 1 | 110 | 4.73e-29 | 101 |
| MS.gene060483.t1 | MTR_7g118060 | 66.102 | 59 | 20 | 0 | 1 | 59 | 1 | 59 | 1.53e-23 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060483.t1 | AT5G24510 | 57.391 | 115 | 38 | 4 | 1 | 108 | 1 | 111 | 1.06e-37 | 123 |
| MS.gene060483.t1 | AT1G01100 | 51.402 | 107 | 39 | 1 | 2 | 108 | 3 | 96 | 7.04e-32 | 108 |
| MS.gene060483.t1 | AT4G00810 | 53.153 | 111 | 48 | 1 | 2 | 108 | 3 | 113 | 2.94e-31 | 107 |
| MS.gene060483.t1 | AT4G00810 | 53.153 | 111 | 48 | 1 | 2 | 108 | 3 | 113 | 2.94e-31 | 107 |
| MS.gene060483.t1 | AT1G01100 | 53.636 | 110 | 48 | 1 | 2 | 108 | 3 | 112 | 6.42e-31 | 106 |
| MS.gene060483.t1 | AT1G01100 | 53.636 | 110 | 48 | 1 | 2 | 108 | 3 | 112 | 6.42e-31 | 106 |
| MS.gene060483.t1 | AT1G01100 | 53.636 | 110 | 48 | 1 | 2 | 108 | 3 | 112 | 6.42e-31 | 106 |
| MS.gene060483.t1 | AT5G47700 | 53.153 | 111 | 48 | 1 | 2 | 108 | 3 | 113 | 9.37e-31 | 105 |
| MS.gene060483.t1 | AT5G47700 | 53.153 | 111 | 48 | 1 | 2 | 108 | 3 | 113 | 9.37e-31 | 105 |
Find 28 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGAGGCAGCAGCAGCAAC+TGG | 0.216487 | 8.1:-75971569 | None:intergenic |
| ACGTTAATGTTGAAGCTTAC+TGG | 0.234944 | 8.1:+75971453 | MS.gene060483:CDS |
| TGGTGCTCCGGTTTCTGTTT+CGG | 0.321080 | 8.1:+75971544 | MS.gene060483:CDS |
| GTCGTCGTCACTCTCATCCT+TGG | 0.357062 | 8.1:-75971719 | None:intergenic |
| ATCATCAAGGTTCTTCTTCT+CGG | 0.364681 | 8.1:-75971498 | None:intergenic |
| ACTGGGGCCGAAACAGAAAC+CGG | 0.462684 | 8.1:-75971551 | None:intergenic |
| TCGTCGTCACTCTCATCCTT+GGG | 0.464875 | 8.1:-75971718 | None:intergenic |
| TGCCGCTGGAGGTGGTGCTC+CGG | 0.491299 | 8.1:+75971532 | MS.gene060483:CDS |
| ATATTGAATGCCGCTGGAGG+TGG | 0.496313 | 8.1:+75971524 | MS.gene060483:CDS |
| GCAAGTTTAGCGAATAAACT+TGG | 0.520693 | 8.1:-75971476 | None:intergenic |
| TGCTCCTATCGAGGAGAAGA+AGG | 0.520970 | 8.1:+75971601 | MS.gene060483:CDS |
| TGGAGGCAGCAGCAGCAACT+GGG | 0.544694 | 8.1:-75971568 | None:intergenic |
| AGGAGCAGCAACTGCAGTGG+AGG | 0.545209 | 8.1:-75971585 | None:intergenic |
| GGATGAGAGTGACGACGACA+TGG | 0.547177 | 8.1:+75971723 | MS.gene060483:CDS |
| GTTTGCAGCTTTCAACAAAG+TGG | 0.560297 | 8.1:-75971432 | None:intergenic |
| GATTTGATATTGAATGCCGC+TGG | 0.580711 | 8.1:+75971518 | MS.gene060483:CDS |
| AACCGGAGCACCACCTCCAG+CGG | 0.583475 | 8.1:-75971534 | None:intergenic |
| CGGCGATGTTATCATCATGA+AGG | 0.588233 | 8.1:-75970729 | None:intergenic |
| TGTAGTGTGAAAATGTCGAT+CGG | 0.589603 | 8.1:+75970676 | None:intergenic |
| CATTCAATATCAAATCATCA+AGG | 0.592309 | 8.1:-75971511 | None:intergenic |
| TGCAGTTGCTGCTCCTATCG+AGG | 0.607768 | 8.1:+75971592 | MS.gene060483:CDS |
| GGAGGCAGCAGCAGCAACTG+GGG | 0.621755 | 8.1:-75971567 | None:intergenic |
| CCTACCTTCTTCTCCTCGAT+AGG | 0.622145 | 8.1:-75971605 | None:intergenic |
| GATAGGAGCAGCAACTGCAG+TGG | 0.632714 | 8.1:-75971588 | None:intergenic |
| ATTATCAAAGGATACAGTGA+CGG | 0.653291 | 8.1:-75970749 | None:intergenic |
| GATGAGAGTGACGACGACAT+GGG | 0.653294 | 8.1:+75971724 | MS.gene060483:CDS |
| GTACTTACAGGAAGAACCCA+AGG | 0.654187 | 8.1:+75971702 | MS.gene060483:intron |
| TTGATATTGAATGCCGCTGG+AGG | 0.659375 | 8.1:+75971521 | MS.gene060483:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATCAATTTTTATATAGT+GGG | + | chr8.1:75971277-75971296 | MS.gene060483:intron | 10.0% |
| !!! | TAAAAAATTAGGTTTTTTAA+AGG | + | chr8.1:75971125-75971144 | MS.gene060483:intron | 10.0% |
| !!! | TAAAATCAATTTTTATATAG+TGG | + | chr8.1:75971276-75971295 | MS.gene060483:intron | 10.0% |
| !!! | TTAAAAAACCTAATTTTTTA+AGG | - | chr8.1:75971125-75971144 | None:intergenic | 10.0% |
| !! | AAAAATTCAGTAATAATTTG+AGG | - | chr8.1:75970993-75971012 | None:intergenic | 15.0% |
| !! | AAATTAGTCCTTAAAAAATT+AGG | + | chr8.1:75971114-75971133 | MS.gene060483:intron | 15.0% |
| !! | ATGAATTAATCAAATGTAAT+TGG | - | chr8.1:75970968-75970987 | None:intergenic | 15.0% |
| !! | ATTACATTATCAATTATCAA+AGG | - | chr8.1:75970764-75970783 | None:intergenic | 15.0% |
| !!! | AAAAATTGATTTTACAACTT+TGG | - | chr8.1:75971270-75971289 | None:intergenic | 15.0% |
| !!! | ACTAAATTAACAATTTTCTA+CGG | + | chr8.1:75971237-75971256 | MS.gene060483:intron | 15.0% |
| !!! | ATTATTACTGAATTTTTTAC+TGG | + | chr8.1:75970996-75971015 | MS.gene060483:intron | 15.0% |
| !!! | TTGAAAAAAAGAGATTTTTT+TGG | + | chr8.1:75970856-75970875 | MS.gene060483:intron | 15.0% |
| !! | AAATTCAGAATATAATTCCT+AGG | + | chr8.1:75971054-75971073 | MS.gene060483:intron | 20.0% |
| !!! | GATTTTCTTTTGTTAGTATA+TGG | + | chr8.1:75970796-75970815 | MS.gene060483:intron | 20.0% |
| !!! | TCTTATCTAATTGGTATTTT+TGG | + | chr8.1:75971677-75971696 | MS.gene060483:intron | 20.0% |
| ! | CATTCAATATCAAATCATCA+AGG | - | chr8.1:75971514-75971533 | None:intergenic | 25.0% |
| ! | TAATGAATTTAGAAGATGCT+AGG | + | chr8.1:75970824-75970843 | MS.gene060483:intron | 25.0% |
| !! | ATTAACAATTTTCTACGGTT+AGG | + | chr8.1:75971242-75971261 | MS.gene060483:intron | 25.0% |
| !! | TTAACAATTTTCTACGGTTA+GGG | + | chr8.1:75971243-75971262 | MS.gene060483:intron | 25.0% |
| !!! | AGATTTTTTTGGATGATACA+AGG | + | chr8.1:75970867-75970886 | MS.gene060483:intron | 25.0% |
| !!! | ATTTTTATATAGTGGGAATC+TGG | + | chr8.1:75971284-75971303 | MS.gene060483:intron | 25.0% |
| !!! | ATTTTTTTGGATGATACAAG+GGG | + | chr8.1:75970869-75970888 | MS.gene060483:intron | 25.0% |
| !!! | GAATTTTGTTTTGGTGAATA+AGG | + | chr8.1:75971312-75971331 | MS.gene060483:intron | 25.0% |
| !!! | GATTTTTTTGGATGATACAA+GGG | + | chr8.1:75970868-75970887 | MS.gene060483:intron | 25.0% |
| !!! | TTTTTATATAGTGGGAATCT+GGG | + | chr8.1:75971285-75971304 | MS.gene060483:intron | 25.0% |
| AATGACAATTAACAACTCCT+AGG | - | chr8.1:75971074-75971093 | None:intergenic | 30.0% | |
| ATTATCAAAGGATACAGTGA+CGG | - | chr8.1:75970752-75970771 | None:intergenic | 30.0% | |
| ATTTAGAAGATGCTAGGAAT+TGG | + | chr8.1:75970830-75970849 | MS.gene060483:intron | 30.0% | |
| TAAAGTTCTTGGATAGAGTT+AGG | + | chr8.1:75971174-75971193 | MS.gene060483:intron | 30.0% | |
| TAAGTGCTAGTTAAAGTTCT+TGG | + | chr8.1:75971163-75971182 | MS.gene060483:intron | 30.0% | |
| TCCTTAAGTCATTGTTGATA+GGG | + | chr8.1:75971398-75971417 | MS.gene060483:intron | 30.0% | |
| TGTTGGTCATCTTATCTAAT+TGG | + | chr8.1:75971668-75971687 | MS.gene060483:intron | 30.0% | |
| TTTAGAAGATGCTAGGAATT+GGG | + | chr8.1:75970831-75970850 | MS.gene060483:intron | 30.0% | |
| !!! | AGATAGCGTGTTTTAAAGAT+TGG | + | chr8.1:75971371-75971390 | MS.gene060483:intron | 30.0% |
| !!! | CTGGGTTTTGAATTTTGTTT+TGG | + | chr8.1:75971303-75971322 | MS.gene060483:intron | 30.0% |
| !!! | GTATTTTTGGTTGTACTTAC+AGG | + | chr8.1:75971690-75971709 | MS.gene060483:intron | 30.0% |
| ACCCTATCAACAATGACTTA+AGG | - | chr8.1:75971402-75971421 | None:intergenic | 35.0% | |
| ACGTTAATGTTGAAGCTTAC+TGG | + | chr8.1:75971453-75971472 | MS.gene060483:CDS | 35.0% | |
| ATCATCAAGGTTCTTCTTCT+CGG | - | chr8.1:75971501-75971520 | None:intergenic | 35.0% | |
| CTCCTTAAGTCATTGTTGAT+AGG | + | chr8.1:75971397-75971416 | MS.gene060483:intron | 35.0% | |
| GAACTTTGTCTTCTGTTTGT+TGG | + | chr8.1:75971651-75971670 | MS.gene060483:intron | 35.0% | |
| GCAAGTTTAGCGAATAAACT+TGG | - | chr8.1:75971479-75971498 | None:intergenic | 35.0% | |
| TTTGGTGAATAAGGAAAGTG+TGG | + | chr8.1:75971321-75971340 | MS.gene060483:intron | 35.0% | |
| ! | AATAAGGAAAGTGTGGTGTA+AGG | + | chr8.1:75971328-75971347 | MS.gene060483:intron | 35.0% |
| ! | ATAAGGAAAGTGTGGTGTAA+GGG | + | chr8.1:75971329-75971348 | MS.gene060483:intron | 35.0% |
| GATGATACAAGGGGCTATAT+AGG | + | chr8.1:75970878-75970897 | MS.gene060483:intron | 40.0% | |
| GATTTGATATTGAATGCCGC+TGG | + | chr8.1:75971518-75971537 | MS.gene060483:CDS | 40.0% | |
| GTTTGCAGCTTTCAACAAAG+TGG | - | chr8.1:75971435-75971454 | None:intergenic | 40.0% | |
| ! | AGGAGAAGAAGGTAGGTTTT+TGG | + | chr8.1:75971612-75971631 | MS.gene060483:intron | 40.0% |
| CCTAAAACGACACTTGTGTC+TGG | + | chr8.1:75970909-75970928 | MS.gene060483:intron | 45.0% | |
| CGGCGATGTTATCATCATGA+AGG | - | chr8.1:75970732-75970751 | None:intergenic | 45.0% | |
| GTACTTACAGGAAGAACCCA+AGG | + | chr8.1:75971702-75971721 | MS.gene060483:intron | 45.0% | |
| TTGATATTGAATGCCGCTGG+AGG | + | chr8.1:75971521-75971540 | MS.gene060483:CDS | 45.0% | |
| !!! | CCAGACACAAGTGTCGTTTT+AGG | - | chr8.1:75970912-75970931 | None:intergenic | 45.0% |
| !!! | TTTTTTTATTTTCTTATTTT+AGG | + | chr8.1:75971214-75971233 | MS.gene060483:intron | 5.0% |
| ATATTGAATGCCGCTGGAGG+TGG | + | chr8.1:75971524-75971543 | MS.gene060483:CDS | 50.0% | |
| CCTACCTTCTTCTCCTCGAT+AGG | - | chr8.1:75971608-75971627 | None:intergenic | 50.0% | |
| CCTATCGAGGAGAAGAAGGT+AGG | + | chr8.1:75971605-75971624 | MS.gene060483:intron | 50.0% | |
| GATGAGAGTGACGACGACAT+GGG | + | chr8.1:75971724-75971743 | MS.gene060483:CDS | 50.0% | |
| TCGTCGTCACTCTCATCCTT+GGG | - | chr8.1:75971721-75971740 | None:intergenic | 50.0% | |
| TGCTCCTATCGAGGAGAAGA+AGG | + | chr8.1:75971601-75971620 | MS.gene060483:CDS | 50.0% | |
| TGGTGCTCCGGTTTCTGTTT+CGG | + | chr8.1:75971544-75971563 | MS.gene060483:CDS | 50.0% | |
| TGGTGTGTGTCAGTGCTTCA+TGG | + | chr8.1:75971016-75971035 | MS.gene060483:intron | 50.0% | |
| ACTGGGGCCGAAACAGAAAC+CGG | - | chr8.1:75971554-75971573 | None:intergenic | 55.0% | |
| GATAGGAGCAGCAACTGCAG+TGG | - | chr8.1:75971591-75971610 | None:intergenic | 55.0% | |
| GGATGAGAGTGACGACGACA+TGG | + | chr8.1:75971723-75971742 | MS.gene060483:CDS | 55.0% | |
| GTCGTCGTCACTCTCATCCT+TGG | - | chr8.1:75971722-75971741 | None:intergenic | 55.0% | |
| TGCAGTTGCTGCTCCTATCG+AGG | + | chr8.1:75971592-75971611 | MS.gene060483:CDS | 55.0% | |
| AGGAGCAGCAACTGCAGTGG+AGG | - | chr8.1:75971588-75971607 | None:intergenic | 60.0% | |
| TGGAGGCAGCAGCAGCAACT+GGG | - | chr8.1:75971571-75971590 | None:intergenic | 60.0% | |
| GGAGGCAGCAGCAGCAACTG+GGG | - | chr8.1:75971570-75971589 | None:intergenic | 65.0% | |
| GTGGAGGCAGCAGCAGCAAC+TGG | - | chr8.1:75971572-75971591 | None:intergenic | 65.0% | |
| ! | AACCGGAGCACCACCTCCAG+CGG | - | chr8.1:75971537-75971556 | None:intergenic | 65.0% |
| TGCCGCTGGAGGTGGTGCTC+CGG | + | chr8.1:75971532-75971551 | MS.gene060483:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 75970688 | 75971765 | 75970688 | ID=MS.gene060483 |
| chr8.1 | mRNA | 75970688 | 75971765 | 75970688 | ID=MS.gene060483.t1;Parent=MS.gene060483 |
| chr8.1 | exon | 75970688 | 75970756 | 75970688 | ID=MS.gene060483.t1.exon1;Parent=MS.gene060483.t1 |
| chr8.1 | CDS | 75970688 | 75970756 | 75970688 | ID=cds.MS.gene060483.t1;Parent=MS.gene060483.t1 |
| chr8.1 | exon | 75971419 | 75971622 | 75971419 | ID=MS.gene060483.t1.exon2;Parent=MS.gene060483.t1 |
| chr8.1 | CDS | 75971419 | 75971622 | 75971419 | ID=cds.MS.gene060483.t1;Parent=MS.gene060483.t1 |
| chr8.1 | exon | 75971712 | 75971765 | 75971712 | ID=MS.gene060483.t1.exon3;Parent=MS.gene060483.t1 |
| chr8.1 | CDS | 75971712 | 75971765 | 75971712 | ID=cds.MS.gene060483.t1;Parent=MS.gene060483.t1 |
| Gene Sequence |
| Protein sequence |
