AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062755


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062755.t1 MTR_1g021120 97.450 549 14 0 1 549 1 549 0.0 1098
MS.gene062755.t1 MTR_8g086520 57.534 511 217 0 35 545 12 522 0.0 614
MS.gene062755.t1 MTR_3g080390 57.977 514 215 1 33 545 5 518 0.0 607
MS.gene062755.t1 MTR_2g016460 54.314 510 233 0 36 545 13 522 0.0 593
MS.gene062755.t1 MTR_3g078270 51.852 513 245 1 36 546 19 531 0.0 542
MS.gene062755.t1 MTR_4g106750 50.464 539 249 4 12 546 7 531 0.0 538
MS.gene062755.t1 MTR_8g063220 51.076 511 248 1 38 546 22 532 0.0 532
MS.gene062755.t1 MTR_1g106085 51.556 514 243 3 36 546 16 526 0.0 527
MS.gene062755.t1 MTR_8g086520 57.788 443 187 0 35 477 12 454 0.0 527
MS.gene062755.t1 MTR_3g103230 49.231 520 254 4 32 546 39 553 1.81e-177 512
MS.gene062755.t1 MTR_5g035180 48.113 530 267 4 21 546 12 537 6.28e-177 510
MS.gene062755.t1 MTR_4g106750 51.240 484 230 3 67 546 1 482 4.55e-172 496
MS.gene062755.t1 MTR_8g086520 57.855 401 169 0 145 545 6 406 4.59e-172 493
MS.gene062755.t1 MTR_5g022110 49.708 513 249 3 38 546 39 546 1.01e-171 497
MS.gene062755.t1 MTR_8g086520 58.462 390 162 0 35 424 12 401 2.74e-162 468
MS.gene062755.t1 MTR_4g106750 51.226 367 177 1 182 546 13 379 8.95e-131 386
MS.gene062755.t1 MTR_2g084895 35.327 535 304 9 42 540 146 674 1.64e-101 321
MS.gene062755.t1 MTR_8g068550 32.083 533 326 4 42 542 225 753 2.26e-94 304
MS.gene062755.t1 MTR_4g055290 33.395 539 312 8 37 539 148 675 7.12e-93 298
MS.gene062755.t1 MTR_2g103510 34.291 522 297 11 43 547 94 586 2.34e-91 292
MS.gene062755.t1 MTR_5g032020 32.959 534 318 5 42 541 167 694 2.57e-89 290
MS.gene062755.t1 MTR_8g086535 65.000 100 35 0 325 424 18 117 1.23e-35 129
MS.gene062755.t1 MTR_5g042660 53.571 56 26 0 478 533 39 94 9.57e-15 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062755.t1 AT2G26510 69.754 529 159 1 22 549 23 551 0.0 744
MS.gene062755.t1 AT2G34190 55.686 510 226 0 36 545 13 522 0.0 604
MS.gene062755.t1 AT2G05760 56.360 511 222 1 36 545 8 518 0.0 601
MS.gene062755.t1 AT5G62890 50.279 537 253 2 12 546 7 531 0.0 536
MS.gene062755.t1 AT5G62890 50.279 537 253 2 12 546 7 531 0.0 536
MS.gene062755.t1 AT5G62890 50.279 537 253 2 12 546 7 531 0.0 536
MS.gene062755.t1 AT1G60030 49.053 528 264 2 21 546 13 537 0.0 530
MS.gene062755.t1 AT2G26510 70.557 377 111 0 22 398 23 399 0.0 523
MS.gene062755.t1 AT2G26510 70.879 364 106 0 22 385 23 386 2.98e-179 512
MS.gene062755.t1 AT5G49990 51.267 513 248 1 36 546 15 527 6.84e-178 512
MS.gene062755.t1 AT5G49990 51.267 513 248 1 36 546 15 527 6.84e-178 512
MS.gene062755.t1 AT5G49990 51.267 513 248 1 36 546 15 527 6.84e-178 512
MS.gene062755.t1 AT5G49990 51.267 513 248 1 36 546 15 527 6.84e-178 512
MS.gene062755.t1 AT1G10540 48.218 533 264 6 21 546 11 538 2.38e-176 509
MS.gene062755.t1 AT1G49960 50.489 511 251 1 38 546 15 525 6.63e-168 486
MS.gene062755.t1 AT1G65550 46.525 518 266 3 38 546 25 540 4.32e-164 478
MS.gene062755.t1 AT5G62890 50.429 466 219 1 12 477 7 460 1.40e-160 466
MS.gene062755.t1 AT1G10540 46.997 383 193 5 21 398 11 388 4.98e-119 357
MS.gene062755.t1 AT5G25420 40.995 422 181 5 38 459 37 390 2.13e-100 310
MS.gene062755.t1 AT2G27810 33.520 537 320 6 41 543 167 700 9.07e-93 299
MS.gene062755.t1 AT2G27810 32.086 561 320 7 41 543 167 724 2.65e-87 285
MS.gene062755.t1 AT4G38050 31.285 537 333 4 43 547 175 707 3.05e-81 268
MS.gene062755.t1 AT2G27810 36.085 424 252 3 41 446 167 589 9.30e-80 261
MS.gene062755.t1 AT2G27810 36.340 377 221 3 41 399 167 542 4.14e-68 229

Find 156 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCGCCGCAGCCAGGCTTTC+TGG 0.141398 1.4:+3135312 MS.gene062755:CDS
TTATCTGCATTGCCGTTATT+TGG 0.173804 1.4:+3134415 MS.gene062755:CDS
GGACCACCACCTCAGAATTT+TGG 0.200219 1.4:+3132566 MS.gene062755:CDS
TTCAAGGCTTCCGGTGATTA+TGG 0.205728 1.4:+3133425 MS.gene062755:CDS
GCCGCTATCCTTACCGTTGC+TGG 0.267986 1.4:+3134444 MS.gene062755:CDS
CAGCCGAAGCATCGGGCTTC+AGG 0.280020 1.4:+3135362 MS.gene062755:CDS
TGCAGCTGAAGCATTGCTTT+TGG 0.280132 1.4:+3133075 MS.gene062755:intron
CTATCTCCTGCAGCTGCTAC+TGG 0.282930 1.4:+3136161 MS.gene062755:intron
TTCAAAGCTAGTCATGTCTT+TGG 0.283918 1.4:+3134927 MS.gene062755:CDS
GACATGACTAGCTTTGAATA+TGG 0.296354 1.4:-3134922 None:intergenic
TTCAGACTTGGTTTGGTTCA+AGG 0.300502 1.4:+3133409 MS.gene062755:CDS
AACTTTCGCATCTGAGAATC+AGG 0.310869 1.4:+3133506 MS.gene062755:CDS
TTCGGCTTAACCTTGTTTCT+CGG 0.314131 1.4:+3136236 MS.gene062755:CDS
TCTGTCCACAGCTGTTTGTT+TGG 0.324863 1.4:-3136636 None:intergenic
CAGTATATAGCAGCGAATAT+TGG 0.336373 1.4:-3136039 None:intergenic
TTGGTTTGGTTCAAGGCTTC+CGG 0.345806 1.4:+3133416 MS.gene062755:CDS
TATCTGCATTGCCGTTATTT+GGG 0.347060 1.4:+3134416 MS.gene062755:CDS
TCAAGGCTTCCGGTGATTAT+GGG 0.354222 1.4:+3133426 MS.gene062755:CDS
GCATCCATTCAAATCCTTCA+TGG 0.366156 1.4:+3132645 MS.gene062755:CDS
GAAAACATAGATATTCCTTA+TGG 0.375416 1.4:-3136216 None:intergenic
ATGTCTATTTCAGGTAAATT+CGG 0.375930 1.4:+3135991 MS.gene062755:intron
CAGACATTGTTGTTTATGTC+TGG 0.378631 1.4:+3133372 MS.gene062755:CDS
CATCCACCATTGGTTCTAAC+TGG 0.379887 1.4:-3136311 None:intergenic
GATTCTCAGATGCGAAAGTT+TGG 0.384482 1.4:-3133503 None:intergenic
GAGAGGAATTGATGCGAAAA+AGG 0.386029 1.4:-3136016 None:intergenic
AGTATATAGCAGCGAATATT+GGG 0.387392 1.4:-3136038 None:intergenic
AAGCAACCTTGTACCTCAAA+TGG 0.396389 1.4:+3133144 MS.gene062755:CDS
AGCACTTGTCACTTCTTTCG+AGG 0.406623 1.4:+3134962 MS.gene062755:CDS
TCAAAGCTAGTCATGTCTTT+GGG 0.407287 1.4:+3134928 MS.gene062755:CDS
GGCATTTGTGGCTCTATTGT+TGG 0.413169 1.4:+3135497 MS.gene062755:CDS
CCTGAACTGACGGTGGTGCT+TGG 0.414463 1.4:-3132532 None:intergenic
GACTTTCAAGGGGTCCCACT+TGG 0.421667 1.4:+3132588 MS.gene062755:CDS
CAGCACTACATTGTGATGCT+TGG 0.426352 1.4:+3133103 MS.gene062755:CDS
ACATTGCTTCAGACTTGGTT+TGG 0.426916 1.4:+3133402 MS.gene062755:CDS
TCGGCTTAACCTTGTTTCTC+GGG 0.432455 1.4:+3136237 MS.gene062755:CDS
ACATGACTAGCTTTGAATAT+GGG 0.438479 1.4:-3134921 None:intergenic
ACATGACTCCCACCCATTTG+AGG 0.442621 1.4:-3133157 None:intergenic
TACTCGGTCTCACACACATT+GGG 0.444707 1.4:+3135833 MS.gene062755:CDS
TAGTCATGTCTTTGGGATGA+TGG 0.446341 1.4:+3134935 MS.gene062755:CDS
CAGACATAAACAACAATGTC+TGG 0.448314 1.4:-3133371 None:intergenic
CCAACTGTGGCAATAATAGT+TGG 0.450422 1.4:+3136587 MS.gene062755:CDS
GGGTGTTGCACCAGAAAGCC+TGG 0.450632 1.4:-3135322 None:intergenic
GGTGGGTTCCTTTCCAGAAA+AGG 0.452846 1.4:+3136669 MS.gene062755:CDS
CCAAGCACCACCGTCAGTTC+AGG 0.456536 1.4:+3132532 MS.gene062755:CDS
ATGTGCTCAGCCGAAGCATC+GGG 0.457152 1.4:+3135355 MS.gene062755:CDS
TGAGGTGGTGGTCCCGGTGG+CGG 0.457958 1.4:-3132557 None:intergenic
TCTGCTGATTGTAACACAAC+AGG 0.459246 1.4:+3134255 MS.gene062755:CDS
ACTATTATTGCCACAGTTGG+TGG 0.463983 1.4:-3136584 None:intergenic
TACACAATTAGAACAATTCA+AGG 0.469316 1.4:+3133812 MS.gene062755:CDS
AGTTGGTGGAGATGAGAATA+TGG 0.469785 1.4:-3136570 None:intergenic
ATGCTGATTGAAGGCATTTG+TGG 0.474680 1.4:+3135485 MS.gene062755:CDS
AGCTGAAGAAGCTGTTCAGC+TGG 0.475988 1.4:-3132614 None:intergenic
TTGCAAATAACAATTCCATA+AGG 0.480068 1.4:+3136201 MS.gene062755:CDS
GTCAGTTCAGGCACCGCCAC+CGG 0.482612 1.4:+3132544 MS.gene062755:CDS
GTGGTATGTGTGGTTGGACT+CGG 0.482699 1.4:+3134070 MS.gene062755:CDS
TATCTCCTGCAGCTGCTACT+GGG 0.483276 1.4:+3136162 MS.gene062755:intron
TCACCTGAAGCCCGATGCTT+CGG 0.483967 1.4:-3135365 None:intergenic
CTGAGCACATGTGCCGGAGG+GGG 0.486945 1.4:-3135342 None:intergenic
GTACTTTCTTCGCCGCAGCC+AGG 0.487390 1.4:+3135304 MS.gene062755:CDS
GGCATTAGCATGCTGATTGA+AGG 0.489200 1.4:+3135476 MS.gene062755:CDS
ATCACTTGCTTTCTATCTAC+CGG 0.489632 1.4:+3133452 MS.gene062755:CDS
CTAACTGGACCATGACCATC+AGG 0.492436 1.4:-3136296 None:intergenic
CATGTGCTCAGCCGAAGCAT+CGG 0.494578 1.4:+3135354 MS.gene062755:CDS
TCAACACATTGCTTCAGACT+TGG 0.504520 1.4:+3133397 MS.gene062755:CDS
CGGCTGAGCACATGTGCCGG+AGG 0.507745 1.4:-3135345 None:intergenic
AAATTCTGAGGTGGTGGTCC+CGG 0.508298 1.4:-3132563 None:intergenic
TGCACCAGAAAGCCTGGCTG+CGG 0.513047 1.4:-3135316 None:intergenic
CAGTTAGAACCAATGGTGGA+TGG 0.514008 1.4:+3136312 MS.gene062755:CDS
TCCCATTGTCATTGTACCTG+TGG 0.514468 1.4:+3134051 MS.gene062755:CDS
GGCTGAGCACATGTGCCGGA+GGG 0.515040 1.4:-3135344 None:intergenic
CTTCGGCTGAGCACATGTGC+CGG 0.519002 1.4:-3135348 None:intergenic
TAGGAATATATTCAGACAAA+CGG 0.520368 1.4:-3136733 None:intergenic
TATTCCTAGTAGATTTCTCT+AGG 0.521140 1.4:+3136748 MS.gene062755:CDS
ACCACAGGTACAATGACAAT+GGG 0.521905 1.4:-3134052 None:intergenic
TGGACTCGGTCTGTTCGCGA+GGG 0.523642 1.4:+3134084 MS.gene062755:CDS
TGCTACATACCATGGTGCAC+GGG 0.526388 1.4:-3134532 None:intergenic
GAACTGACGGTGGTGCTTGG+TGG 0.527613 1.4:-3132529 None:intergenic
AGCAACCTTGTACCTCAAAT+GGG 0.529370 1.4:+3133145 MS.gene062755:CDS
AGTCATGTCTTTGGGATGAT+GGG 0.533189 1.4:+3134936 MS.gene062755:CDS
TTGCTACATACCATGGTGCA+CGG 0.537859 1.4:-3134533 None:intergenic
TTTGAAGCACCTTCATGCTA+AGG 0.538653 1.4:+3134362 MS.gene062755:CDS
GTGACTTACCCATCCACCAT+TGG 0.539247 1.4:-3136321 None:intergenic
CATGACTAGCTTTGAATATG+GGG 0.540448 1.4:-3134920 None:intergenic
GTTCGCGAGGGGCTTTCCAA+TGG 0.542911 1.4:+3134096 MS.gene062755:CDS
ACCATGGTGCACGGGTCAGA+AGG 0.543944 1.4:-3134524 None:intergenic
ACAATCAGCAGAAGGAGCAT+AGG 0.544491 1.4:-3134244 None:intergenic
TTGGACTCGGTCTGTTCGCG+AGG 0.546006 1.4:+3134083 MS.gene062755:CDS
AGTGAAAATGTCGGTCTACT+CGG 0.546301 1.4:+3135817 MS.gene062755:intron
CAACTGTGGCAATAATAGTT+GGG 0.546683 1.4:+3136588 MS.gene062755:CDS
CATGGTCCAGTTAGAACCAA+TGG 0.547851 1.4:+3136305 MS.gene062755:CDS
TCCCACCCATTTGAGGTACA+AGG 0.549191 1.4:-3133150 None:intergenic
AGTCCAAAATTCTGAGGTGG+TGG 0.551027 1.4:-3132569 None:intergenic
GTACCTGTGGTATGTGTGGT+TGG 0.555163 1.4:+3134064 MS.gene062755:CDS
GCTGAGCACATGTGCCGGAG+GGG 0.557764 1.4:-3135343 None:intergenic
AGGCTTCCGGTGATTATGGG+TGG 0.559262 1.4:+3133429 MS.gene062755:CDS
ATATCTTCCTTGGATATAGT+AGG 0.561320 1.4:+3133861 MS.gene062755:CDS
TATTCCTAGAGAAATCTACT+AGG 0.561420 1.4:-3136752 None:intergenic
TCCTTGGATATAGTAGGACA+TGG 0.564119 1.4:+3133867 MS.gene062755:CDS
AACGCCATGAAGGATTTGAA+TGG 0.564370 1.4:-3132649 None:intergenic
GTACCCCACTGAAATGGGTA+TGG 0.565676 1.4:-3134897 None:intergenic
AGCGGCGAAAGCCCAAATAA+CGG 0.565764 1.4:-3134427 None:intergenic
CCAACTATTATTGCCACAGT+TGG 0.566946 1.4:-3136587 None:intergenic
TATGATGAGCCTTAGCATGA+AGG 0.568732 1.4:-3134371 None:intergenic
ATGTTCCATACCCATTTCAG+TGG 0.568754 1.4:+3134892 MS.gene062755:CDS
TCAGTTCAGGCACCGCCACC+GGG 0.569461 1.4:+3132545 MS.gene062755:CDS
AGTTAGAACCAATGGTGGAT+GGG 0.570107 1.4:+3136313 MS.gene062755:CDS
GGTGGCGGTGCCTGAACTGA+CGG 0.570549 1.4:-3132542 None:intergenic
ACCTTGTACCTCAAATGGGT+GGG 0.574764 1.4:+3133149 MS.gene062755:CDS
AAAAGATACTAACGCCATGA+AGG 0.576140 1.4:-3132659 None:intergenic
GGTTCCTTTCCAGAAAAGGA+AGG 0.579848 1.4:+3136673 MS.gene062755:CDS
TGTATGCACCAGCAACGGTA+AGG 0.580085 1.4:-3134452 None:intergenic
TGTTCCATACCCATTTCAGT+GGG 0.582233 1.4:+3134893 MS.gene062755:CDS
AACCTTGTACCTCAAATGGG+TGG 0.584925 1.4:+3133148 MS.gene062755:CDS
TTCTGGAAAGGAACCCACCA+TGG 0.587333 1.4:-3136665 None:intergenic
TTCTGAGGTGGTGGTCCCGG+TGG 0.588875 1.4:-3132560 None:intergenic
CCTTGGATATAGTAGGACAT+GGG 0.589670 1.4:+3133868 MS.gene062755:CDS
CTTGCAGATTGTGTGCAGAT+CGG 0.590049 1.4:+3134217 MS.gene062755:CDS
GATAATTGTAGTGAAAATGT+CGG 0.591973 1.4:+3135808 MS.gene062755:intron
AGGCTCATCATATACTTGAG+AGG 0.595130 1.4:+3134382 MS.gene062755:CDS
TACCACAGGTACAATGACAA+TGG 0.595377 1.4:-3134053 None:intergenic
CCCATGTCCTACTATATCCA+AGG 0.596457 1.4:-3133868 None:intergenic
TCATTTATGATCGACATCAC+CGG 0.597681 1.4:-3133471 None:intergenic
GGACTCGGTCTGTTCGCGAG+GGG 0.599513 1.4:+3134085 MS.gene062755:CDS
CTACTCGGTCTCACACACAT+TGG 0.599743 1.4:+3135832 MS.gene062755:CDS
TGGACAGAGGACTTCCATGG+TGG 0.609884 1.4:+3136651 MS.gene062755:CDS
GGACAGAGGACTTCCATGGT+GGG 0.611007 1.4:+3136652 MS.gene062755:CDS
AGTGATCCACCCATAATCAC+CGG 0.611658 1.4:-3133435 None:intergenic
CATTGTACCTGTGGTATGTG+TGG 0.617786 1.4:+3134060 MS.gene062755:CDS
AGTATTGTATGCACCAGCAA+CGG 0.621068 1.4:-3134457 None:intergenic
GGCTGCGGCGAAGAAAGTAC+CGG 0.621910 1.4:-3135301 None:intergenic
CTTGAAAGTCCAAAATTCTG+AGG 0.626530 1.4:-3132575 None:intergenic
TGTTCAGCTGGAGTCCAAGT+GGG 0.628708 1.4:-3132602 None:intergenic
CTGTTCAGCTGGAGTCCAAG+TGG 0.629085 1.4:-3132603 None:intergenic
GTTCCTTTCCAGAAAAGGAA+GGG 0.629131 1.4:+3136674 MS.gene062755:CDS
ATAGCAGCGAATATTGGGAG+AGG 0.630706 1.4:-3136033 None:intergenic
CTGTGGACAGAGGACTTCCA+TGG 0.638844 1.4:+3136648 MS.gene062755:CDS
ACCAGCAACGGTAAGGATAG+CGG 0.639172 1.4:-3134445 None:intergenic
GTCATGAACACTGCACCTGA+TGG 0.642428 1.4:+3136281 MS.gene062755:CDS
GTGTTCATGACAAAATATTG+TGG 0.643236 1.4:-3136269 None:intergenic
CTTGGATATAGTAGGACATG+GGG 0.644457 1.4:+3133869 MS.gene062755:CDS
GGTCCAGTTAGAACCAATGG+TGG 0.646071 1.4:+3136308 MS.gene062755:CDS
ATTCTCATCTCCACCAACTG+TGG 0.646273 1.4:+3136574 MS.gene062755:CDS
AATTGAGATCCCGAGAAACA+AGG 0.647055 1.4:-3136246 None:intergenic
TGAAGCCAAACAAACAGCTG+TGG 0.648330 1.4:+3136631 MS.gene062755:CDS
GAAAGTCCAAAATTCTGAGG+TGG 0.648379 1.4:-3132572 None:intergenic
ACACATTGGGAGCAGAAGAG+TGG 0.649258 1.4:+3135846 MS.gene062755:CDS
ACCTTCTGACCCGTGCACCA+TGG 0.650262 1.4:+3134523 MS.gene062755:CDS
AGTCCAACCACACATACCAC+AGG 0.653099 1.4:-3134067 None:intergenic
AAACAAACAGCTGTGGACAG+AGG 0.674809 1.4:+3136638 MS.gene062755:CDS
GTTGTGTTACAATCAGCAGA+AGG 0.677477 1.4:-3134252 None:intergenic
AACACTGCACCTGATGGTCA+TGG 0.680577 1.4:+3136287 MS.gene062755:CDS
ATGACTAGCTTTGAATATGG+GGG 0.701834 1.4:-3134919 None:intergenic
GGCGGTGCCTGAACTGACGG+TGG 0.713228 1.4:-3132539 None:intergenic
GTTCCATACCCATTTCAGTG+GGG 0.714740 1.4:+3134894 MS.gene062755:CDS
ATATATTCAGACAAACGGAG+AGG 0.715929 1.4:-3136728 None:intergenic
AGAGTGGTGCAAATGTCATG+TGG 0.748681 1.4:+3135862 MS.gene062755:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTTTTATTTTTTT+GGG + chr1.4:3132999-3133018 MS.gene062755:intron 0.0%
!!! TTTTTTTATTTTTATTTTTT+TGG + chr1.4:3132998-3133017 MS.gene062755:intron 0.0%
!! AATTAAAAATACTAAGAATA+AGG - chr1.4:3135001-3135020 None:intergenic 10.0%
!! TCAAAATTTCATTAAAATAA+TGG - chr1.4:3135271-3135290 None:intergenic 10.0%
!!! AAATTGAAATTTTTAGAATT+TGG - chr1.4:3133645-3133664 None:intergenic 10.0%
!!! AATTGAAATTTTTAGAATTT+GGG - chr1.4:3133644-3133663 None:intergenic 10.0%
!!! TAATTTTTTTTTACAAGTTA+AGG - chr1.4:3132755-3132774 None:intergenic 10.0%
!! AATTAAGTTAATTCTTCAAA+TGG - chr1.4:3135406-3135425 None:intergenic 15.0%
!! AATTCTTAACAAATAATCAA+TGG - chr1.4:3135757-3135776 None:intergenic 15.0%
!! ACTATAATAAAAGTTTGAAA+TGG + chr1.4:3134159-3134178 MS.gene062755:intron 15.0%
!!! GTTTATTAGTTAATATCTTT+TGG + chr1.4:3133960-3133979 MS.gene062755:intron 15.0%
!!! TCTTAGTATTTTTAATTCTA+CGG + chr1.4:3135004-3135023 MS.gene062755:intron 15.0%
!!! TTAAATATTGATTATAGACA+TGG + chr1.4:3135729-3135748 MS.gene062755:intron 15.0%
!!! TTTCAAACTTTTATTATAGT+AGG - chr1.4:3134159-3134178 None:intergenic 15.0%
!!! TTTTTTAAAAAAAGTTGCTT+TGG + chr1.4:3132909-3132928 MS.gene062755:intron 15.0%
!! ACATATATGAAAATGACAAA+AGG - chr1.4:3136412-3136431 None:intergenic 20.0%
!! ATAAGTTTATATGTTTGTAG+AGG + chr1.4:3133603-3133622 MS.gene062755:intron 20.0%
!! ATAATTTAATGTGCATGTAA+TGG - chr1.4:3136098-3136117 None:intergenic 20.0%
!! ATGAAAACATATTGTGATTT+CGG + chr1.4:3133544-3133563 MS.gene062755:intron 20.0%
!! CAAACATATAAACTTATGTT+CGG - chr1.4:3133600-3133619 None:intergenic 20.0%
!! CATATATGAAAATGACAAAA+GGG - chr1.4:3136411-3136430 None:intergenic 20.0%
!! CATTAAAATAATGGTAGTAT+AGG - chr1.4:3135262-3135281 None:intergenic 20.0%
!! TAGCAAAAGTAGTATATTTA+GGG + chr1.4:3134550-3134569 MS.gene062755:intron 20.0%
!!! AAATTTTTAGAATTTGGGTT+GGG - chr1.4:3133639-3133658 None:intergenic 20.0%
!!! AACAATTATGTTTTTATTCC+AGG + chr1.4:3134865-3134884 MS.gene062755:intron 20.0%
!!! ATAAGGAATATCTATGTTTT+CGG + chr1.4:3136218-3136237 MS.gene062755:CDS 20.0%
!!! ATGATTTTATGCTCTATTTT+TGG + chr1.4:3135889-3135908 MS.gene062755:CDS 20.0%
!!! ATTAAACTTTTTTTCCAAAC+AGG + chr1.4:3134792-3134811 MS.gene062755:intron 20.0%
!!! CTTATGTATAAGCTATTTTT+AGG - chr1.4:3134764-3134783 None:intergenic 20.0%
!!! GTAATTGTTGTTTTTTGTAA+CGG + chr1.4:3133245-3133264 MS.gene062755:intron 20.0%
! AAAAAATGTGAATTTGCCAA+TGG - chr1.4:3135661-3135680 None:intergenic 25.0%
! AAAAATGTGAATTTGCCAAT+GGG - chr1.4:3135660-3135679 None:intergenic 25.0%
! AAACTCATAAGTGAATGTTT+CGG - chr1.4:3134294-3134313 None:intergenic 25.0%
! ACAATAACAACAACAAAATC+AGG - chr1.4:3133324-3133343 None:intergenic 25.0%
! ACAGAATCAAACTAGAATAA+AGG - chr1.4:3132888-3132907 None:intergenic 25.0%
! ATTACACTTCAATTCTTGTT+TGG + chr1.4:3135920-3135939 MS.gene062755:intron 25.0%
! GAAAACATAGATATTCCTTA+TGG - chr1.4:3136219-3136238 None:intergenic 25.0%
! GATAATTGTAGTGAAAATGT+CGG + chr1.4:3135808-3135827 MS.gene062755:intron 25.0%
! GATAGAGAGATAATTGTATA+AGG - chr1.4:3136146-3136165 None:intergenic 25.0%
! GTAGCAAAAGTAGTATATTT+AGG + chr1.4:3134549-3134568 MS.gene062755:intron 25.0%
! GTCTCTCATTATATGAAATA+AGG + chr1.4:3133573-3133592 MS.gene062755:intron 25.0%
! TAAGTAACATTTAAGTGCAA+TGG - chr1.4:3135952-3135971 None:intergenic 25.0%
! TACACAATTAGAACAATTCA+AGG + chr1.4:3133812-3133831 MS.gene062755:CDS 25.0%
! TAGGAATATATTCAGACAAA+CGG - chr1.4:3136736-3136755 None:intergenic 25.0%
! TATAGTAGGTAATTTATTCG+TGG - chr1.4:3134145-3134164 None:intergenic 25.0%
! TATATGTTAAGAAAAGTAGC+CGG + chr1.4:3136425-3136444 MS.gene062755:intron 25.0%
! TATTTAACCAAATAAAACCC+AGG - chr1.4:3135716-3135735 None:intergenic 25.0%
! TTGCAAATAACAATTCCATA+AGG + chr1.4:3136201-3136220 MS.gene062755:CDS 25.0%
!! ACTTATTTGAGTCTTTTCTT+TGG - chr1.4:3134484-3134503 None:intergenic 25.0%
!! ATGTCTATTTCAGGTAAATT+CGG + chr1.4:3135991-3136010 MS.gene062755:intron 25.0%
!! CTTGTAACTTTTGTGATATA+GGG + chr1.4:3135455-3135474 MS.gene062755:intron 25.0%
!! TAGTATATTTAGGGTCTATT+TGG + chr1.4:3134559-3134578 MS.gene062755:intron 25.0%
!! TTGAATCACCAATTTTATGT+TGG - chr1.4:3133750-3133769 None:intergenic 25.0%
!! TTTCTCTCTTTATCATCTTT+TGG + chr1.4:3133991-3134010 MS.gene062755:intron 25.0%
!!! AATTTTTAGAATTTGGGTTG+GGG - chr1.4:3133638-3133657 None:intergenic 25.0%
!!! ATGTTAGTATTGCTAGTTTT+TGG + chr1.4:3133271-3133290 MS.gene062755:intron 25.0%
!!! GAAATTTTTAGAATTTGGGT+TGG - chr1.4:3133640-3133659 None:intergenic 25.0%
!!! GCTATATACTGTGTTTTATT+CGG + chr1.4:3136051-3136070 MS.gene062755:CDS 25.0%
!!! TTTTTTTCTCTTTCTTTACC+AGG + chr1.4:3134020-3134039 MS.gene062755:intron 25.0%
AAATAGACACATAAATACGC+CGG - chr1.4:3136447-3136466 None:intergenic 30.0%
AATACGCTGAAAACAACTTA+TGG - chr1.4:3134667-3134686 None:intergenic 30.0%
ACAAAAGGGACTTGTAAAAA+GGG - chr1.4:3136397-3136416 None:intergenic 30.0%
AGTATATAGCAGCGAATATT+GGG - chr1.4:3136041-3136060 None:intergenic 30.0%
AGTTTATATGTTTGTAGAGG+TGG + chr1.4:3133606-3133625 MS.gene062755:intron 30.0%
ATATCTTCCTTGGATATAGT+AGG + chr1.4:3133861-3133880 MS.gene062755:CDS 30.0%
ATTTAATGTGCATGTAATGG+TGG - chr1.4:3136095-3136114 None:intergenic 30.0%
CCTATATCACAAAAGTTACA+AGG - chr1.4:3135457-3135476 None:intergenic 30.0%
GAACTTGAACAGTTAAATTG+AGG - chr1.4:3134819-3134838 None:intergenic 30.0%
GAATTTACCTGAAATAGACA+TGG - chr1.4:3135992-3136011 None:intergenic 30.0%
GATCACTTGATGAAAAAGAT+TGG + chr1.4:3133193-3133212 MS.gene062755:intron 30.0%
GTGTTCATGACAAAATATTG+TGG - chr1.4:3136272-3136291 None:intergenic 30.0%
TGCTTTGTCCAACATAAAAT+TGG + chr1.4:3133739-3133758 MS.gene062755:intron 30.0%
TTTAATGTAGCTACATGTGT+CGG + chr1.4:3135114-3135133 MS.gene062755:intron 30.0%
! AAATTTTGAATGCAGTCAAC+CGG + chr1.4:3135282-3135301 MS.gene062755:intron 30.0%
! AATTTTACAGCTTCATTCTC+TGG + chr1.4:3135213-3135232 MS.gene062755:intron 30.0%
! ACAACAACCTTTTACATTTC+CGG + chr1.4:3134329-3134348 MS.gene062755:intron 30.0%
! ATGTTGCTAAAATACCGTTT+TGG + chr1.4:3136476-3136495 MS.gene062755:intron 30.0%
! CCTTGTAACTTTTGTGATAT+AGG + chr1.4:3135454-3135473 MS.gene062755:intron 30.0%
! GATTTTTCCATGTCTATTTC+AGG + chr1.4:3135982-3136001 MS.gene062755:intron 30.0%
! TCAGAATTTTGGACTTTCAA+GGG + chr1.4:3132577-3132596 MS.gene062755:CDS 30.0%
! TCTTTTGTCAATATCTTCCT+TGG + chr1.4:3133851-3133870 MS.gene062755:CDS 30.0%
! TTATGTTTAGTGTTCTGAGT+AGG + chr1.4:3135570-3135589 MS.gene062755:intron 30.0%
!! ACATGACTAGCTTTGAATAT+GGG - chr1.4:3134924-3134943 None:intergenic 30.0%
!! TATTGTTTTGTAGCACGATA+AGG + chr1.4:3133338-3133357 MS.gene062755:intron 30.0%
!!! GTATTGCTAGTTTTTGGTAA+TGG + chr1.4:3133277-3133296 MS.gene062755:intron 30.0%
AAAAGATACTAACGCCATGA+AGG - chr1.4:3132662-3132681 None:intergenic 35.0%
AGTTAAATTGAGGTCCTGTT+TGG - chr1.4:3134809-3134828 None:intergenic 35.0%
ATATATTCAGACAAACGGAG+AGG - chr1.4:3136731-3136750 None:intergenic 35.0%
ATCACTTGCTTTCTATCTAC+CGG + chr1.4:3133452-3133471 MS.gene062755:CDS 35.0%
CAACTGTGGCAATAATAGTT+GGG + chr1.4:3136588-3136607 MS.gene062755:CDS 35.0%
CAGACATAAACAACAATGTC+TGG - chr1.4:3133374-3133393 None:intergenic 35.0%
CAGTATATAGCAGCGAATAT+TGG - chr1.4:3136042-3136061 None:intergenic 35.0%
CTTGAAAGTCCAAAATTCTG+AGG - chr1.4:3132578-3132597 None:intergenic 35.0%
GAAAACAACTTATGGACATG+AGG - chr1.4:3134659-3134678 None:intergenic 35.0%
GACAAAAGGGACTTGTAAAA+AGG - chr1.4:3136398-3136417 None:intergenic 35.0%
TATCTGCATTGCCGTTATTT+GGG + chr1.4:3134416-3134435 MS.gene062755:CDS 35.0%
TATGTAGCACTTCAGATCAA+AGG - chr1.4:3135175-3135194 None:intergenic 35.0%
TCAAAGCTAGTCATGTCTTT+GGG + chr1.4:3134928-3134947 MS.gene062755:CDS 35.0%
TCATTTATGATCGACATCAC+CGG - chr1.4:3133474-3133493 None:intergenic 35.0%
TTATCTGCATTGCCGTTATT+TGG + chr1.4:3134415-3134434 MS.gene062755:CDS 35.0%
TTCAAAGCTAGTCATGTCTT+TGG + chr1.4:3134927-3134946 MS.gene062755:CDS 35.0%
! CAGAATTTTGGACTTTCAAG+GGG + chr1.4:3132578-3132597 MS.gene062755:CDS 35.0%
! CTCAGAATTTTGGACTTTCA+AGG + chr1.4:3132576-3132595 MS.gene062755:CDS 35.0%
!! ACTACTTTTGCTACATACCA+TGG - chr1.4:3134543-3134562 None:intergenic 35.0%
!! ATGACTAGCTTTGAATATGG+GGG - chr1.4:3134922-3134941 None:intergenic 35.0%
!! CAGACATTGTTGTTTATGTC+TGG + chr1.4:3133372-3133391 MS.gene062755:CDS 35.0%
!! CATGACTAGCTTTGAATATG+GGG - chr1.4:3134923-3134942 None:intergenic 35.0%
!! GACATGACTAGCTTTGAATA+TGG - chr1.4:3134925-3134944 None:intergenic 35.0%
!! TGTGTTTTATTCGGCATTGT+CGG + chr1.4:3136060-3136079 MS.gene062755:CDS 35.0%
AACATGGAAAGGGTTATAGG+TGG + chr1.4:3135597-3135616 MS.gene062755:intron 40.0%
AACGCCATGAAGGATTTGAA+TGG - chr1.4:3132652-3132671 None:intergenic 40.0%
AACTTTCGCATCTGAGAATC+AGG + chr1.4:3133506-3133525 MS.gene062755:CDS 40.0%
AAGCAACCTTGTACCTCAAA+TGG + chr1.4:3133144-3133163 MS.gene062755:CDS 40.0%
AAGCTATCCTAGAGAGCTTA+TGG - chr1.4:3134691-3134710 None:intergenic 40.0%
AATAAAACCCAGGTTGTGCA+TGG - chr1.4:3135706-3135725 None:intergenic 40.0%
AATTGAGATCCCGAGAAACA+AGG - chr1.4:3136249-3136268 None:intergenic 40.0%
ACCACAGGTACAATGACAAT+GGG - chr1.4:3134055-3134074 None:intergenic 40.0%
ACGTGTGGTTTATGCTTGTT+TGG + chr1.4:3133699-3133718 MS.gene062755:intron 40.0%
ACTATTATTGCCACAGTTGG+TGG - chr1.4:3136587-3136606 None:intergenic 40.0%
AGCAACCTTGTACCTCAAAT+GGG + chr1.4:3133145-3133164 MS.gene062755:CDS 40.0%
AGGCTCATCATATACTTGAG+AGG + chr1.4:3134382-3134401 MS.gene062755:CDS 40.0%
AGTAGGAGTGAACATGGAAA+GGG + chr1.4:3135587-3135606 MS.gene062755:intron 40.0%
AGTATTGTATGCACCAGCAA+CGG - chr1.4:3134460-3134479 None:intergenic 40.0%
AGTGAAAATGTCGGTCTACT+CGG + chr1.4:3135817-3135836 MS.gene062755:intron 40.0%
ATGGAAATAGCAGTGGAGTA+TGG - chr1.4:3135687-3135706 None:intergenic 40.0%
ATGTTCCATACCCATTTCAG+TGG + chr1.4:3134892-3134911 MS.gene062755:CDS 40.0%
CAATGGGATAACTAGACACT+AGG - chr1.4:3135644-3135663 None:intergenic 40.0%
CCAACTATTATTGCCACAGT+TGG - chr1.4:3136590-3136609 None:intergenic 40.0%
CCAACTGTGGCAATAATAGT+TGG + chr1.4:3136587-3136606 MS.gene062755:CDS 40.0%
CCTTGGATATAGTAGGACAT+GGG + chr1.4:3133868-3133887 MS.gene062755:CDS 40.0%
CGTATTTCCATAAGCTCTCT+AGG + chr1.4:3134681-3134700 MS.gene062755:intron 40.0%
CTAGTGTCTAGTTATCCCAT+TGG + chr1.4:3135642-3135661 MS.gene062755:intron 40.0%
CTTGGATATAGTAGGACATG+GGG + chr1.4:3133869-3133888 MS.gene062755:CDS 40.0%
GAGAGGAATTGATGCGAAAA+AGG - chr1.4:3136019-3136038 None:intergenic 40.0%
GATTCTCAGATGCGAAAGTT+TGG - chr1.4:3133506-3133525 None:intergenic 40.0%
GCATCCATTCAAATCCTTCA+TGG + chr1.4:3132645-3132664 MS.gene062755:CDS 40.0%
GTCGCACAAATACTTACCAT+TGG - chr1.4:3134115-3134134 None:intergenic 40.0%
GTGAACATGGAAAGGGTTAT+AGG + chr1.4:3135594-3135613 MS.gene062755:intron 40.0%
GTTCCTTTCCAGAAAAGGAA+GGG + chr1.4:3136674-3136693 MS.gene062755:CDS 40.0%
GTTGTGTTACAATCAGCAGA+AGG - chr1.4:3134255-3134274 None:intergenic 40.0%
TACCACAGGTACAATGACAA+TGG - chr1.4:3134056-3134075 None:intergenic 40.0%
TACTGACATAAGCACTTGTG+TGG + chr1.4:3134603-3134622 MS.gene062755:intron 40.0%
TATGACACTTGCACTTGTAG+AGG + chr1.4:3133783-3133802 MS.gene062755:intron 40.0%
TATGATGAGCCTTAGCATGA+AGG - chr1.4:3134374-3134393 None:intergenic 40.0%
TCAACACATTGCTTCAGACT+TGG + chr1.4:3133397-3133416 MS.gene062755:CDS 40.0%
TCCTTGGATATAGTAGGACA+TGG + chr1.4:3133867-3133886 MS.gene062755:CDS 40.0%
TGGGTATGGAACATAAATCC+TGG - chr1.4:3134886-3134905 None:intergenic 40.0%
TGTTCCATACCCATTTCAGT+GGG + chr1.4:3134893-3134912 MS.gene062755:CDS 40.0%
! ACATTGCTTCAGACTTGGTT+TGG + chr1.4:3133402-3133421 MS.gene062755:CDS 40.0%
! GAAAGTCCAAAATTCTGAGG+TGG - chr1.4:3132575-3132594 None:intergenic 40.0%
! TAACATCTCCCTTCCTTTTC+TGG - chr1.4:3136685-3136704 None:intergenic 40.0%
! TCTGCTGATTGTAACACAAC+AGG + chr1.4:3134255-3134274 MS.gene062755:CDS 40.0%
! TTCGGCTTAACCTTGTTTCT+CGG + chr1.4:3136236-3136255 MS.gene062755:CDS 40.0%
! TTTGAAGCACCTTCATGCTA+AGG + chr1.4:3134362-3134381 MS.gene062755:CDS 40.0%
! TTTTATTCGGCATTGTCGGT+AGG + chr1.4:3136064-3136083 MS.gene062755:intron 40.0%
!! AGTCATGTCTTTGGGATGAT+GGG + chr1.4:3134936-3134955 MS.gene062755:CDS 40.0%
!! AGTTAGAACCAATGGTGGAT+GGG + chr1.4:3136313-3136332 MS.gene062755:CDS 40.0%
!! AGTTGGTGGAGATGAGAATA+TGG - chr1.4:3136573-3136592 None:intergenic 40.0%
!! ATGCTGATTGAAGGCATTTG+TGG + chr1.4:3135485-3135504 MS.gene062755:CDS 40.0%
!! TAGTCATGTCTTTGGGATGA+TGG + chr1.4:3134935-3134954 MS.gene062755:CDS 40.0%
!! TTCAGACTTGGTTTGGTTCA+AGG + chr1.4:3133409-3133428 MS.gene062755:CDS 40.0%
!!! GCTAGTTTTTGGTAATGGCA+GGG + chr1.4:3133282-3133301 MS.gene062755:intron 40.0%
!!! TGCACAACCTGGGTTTTATT+TGG + chr1.4:3135706-3135725 MS.gene062755:intron 40.0%
!!! TGCTAGTTTTTGGTAATGGC+AGG + chr1.4:3133281-3133300 MS.gene062755:intron 40.0%
AAACAAACAGCTGTGGACAG+AGG + chr1.4:3136638-3136657 MS.gene062755:CDS 45.0%
AACCTTGTACCTCAAATGGG+TGG + chr1.4:3133148-3133167 MS.gene062755:CDS 45.0%
ACCTTGTACCTCAAATGGGT+GGG + chr1.4:3133149-3133168 MS.gene062755:CDS 45.0%
AGAGTGGTGCAAATGTCATG+TGG + chr1.4:3135862-3135881 MS.gene062755:CDS 45.0%
AGTGATCCACCCATAATCAC+CGG - chr1.4:3133438-3133457 None:intergenic 45.0%
ATAGCAGCGAATATTGGGAG+AGG - chr1.4:3136036-3136055 None:intergenic 45.0%
ATTCTCATCTCCACCAACTG+TGG + chr1.4:3136574-3136593 MS.gene062755:CDS 45.0%
CAGCACTACATTGTGATGCT+TGG + chr1.4:3133103-3133122 MS.gene062755:CDS 45.0%
CATGGTCCAGTTAGAACCAA+TGG + chr1.4:3136305-3136324 MS.gene062755:CDS 45.0%
CATTGTACCTGTGGTATGTG+TGG + chr1.4:3134060-3134079 MS.gene062755:CDS 45.0%
CCCATGTCCTACTATATCCA+AGG - chr1.4:3133871-3133890 None:intergenic 45.0%
CTTGCAGATTGTGTGCAGAT+CGG + chr1.4:3134217-3134236 MS.gene062755:CDS 45.0%
GACAATGGGACTAAACAACC+TGG - chr1.4:3134041-3134060 None:intergenic 45.0%
GAGTAGGAGTGAACATGGAA+AGG + chr1.4:3135586-3135605 MS.gene062755:intron 45.0%
GGACTTGTAAAAAGGGACTG+AGG - chr1.4:3136390-3136409 None:intergenic 45.0%
GGTTCCTTTCCAGAAAAGGA+AGG + chr1.4:3136673-3136692 MS.gene062755:CDS 45.0%
GTACCTTGTCTTGTCTTGTG+TGG + chr1.4:3136522-3136541 MS.gene062755:intron 45.0%
GTCAACTGAATTGCTACGTG+TGG + chr1.4:3133684-3133703 MS.gene062755:intron 45.0%
GTTCCATACCCATTTCAGTG+GGG + chr1.4:3134894-3134913 MS.gene062755:CDS 45.0%
GTTGTGCATGGAAATAGCAG+TGG - chr1.4:3135694-3135713 None:intergenic 45.0%
TACTCGGTCTCACACACATT+GGG + chr1.4:3135833-3135852 MS.gene062755:CDS 45.0%
TCAAGGCTTCCGGTGATTAT+GGG + chr1.4:3133426-3133445 MS.gene062755:CDS 45.0%
TCCCATTGTCATTGTACCTG+TGG + chr1.4:3134051-3134070 MS.gene062755:CDS 45.0%
TCTGTCCACAGCTGTTTGTT+TGG - chr1.4:3136639-3136658 None:intergenic 45.0%
TGAAGCCAAACAAACAGCTG+TGG + chr1.4:3136631-3136650 MS.gene062755:CDS 45.0%
TGCAGGACCGGAAATGTAAA+AGG - chr1.4:3134339-3134358 None:intergenic 45.0%
TGCTTCAAATACTGCAGGAC+CGG - chr1.4:3134351-3134370 None:intergenic 45.0%
TGGAAAGGGTTATAGGTGGA+AGG + chr1.4:3135601-3135620 MS.gene062755:intron 45.0%
TGTCGGACACTAAGACATGT+TGG + chr1.4:3135137-3135156 MS.gene062755:intron 45.0%
TTCAAGGCTTCCGGTGATTA+TGG + chr1.4:3133425-3133444 MS.gene062755:CDS 45.0%
TTGCCACACAAGACAAGACA+AGG - chr1.4:3136528-3136547 None:intergenic 45.0%
TTGCTACATACCATGGTGCA+CGG - chr1.4:3134536-3134555 None:intergenic 45.0%
! ACAATCAGCAGAAGGAGCAT+AGG - chr1.4:3134247-3134266 None:intergenic 45.0%
! AGCACTTGTCACTTCTTTCG+AGG + chr1.4:3134962-3134981 MS.gene062755:CDS 45.0%
! CAGTTAGAACCAATGGTGGA+TGG + chr1.4:3136312-3136331 MS.gene062755:CDS 45.0%
! GCTATTTCCATGCACAACCT+GGG + chr1.4:3135696-3135715 MS.gene062755:intron 45.0%
! GGCATTAGCATGCTGATTGA+AGG + chr1.4:3135476-3135495 MS.gene062755:CDS 45.0%
! GGCATTTGTGGCTCTATTGT+TGG + chr1.4:3135497-3135516 MS.gene062755:CDS 45.0%
! GTTCTGAGTAGGAGTGAACA+TGG + chr1.4:3135581-3135600 MS.gene062755:intron 45.0%
! TCGGCTTAACCTTGTTTCTC+GGG + chr1.4:3136237-3136256 MS.gene062755:CDS 45.0%
!! AGTCCAAAATTCTGAGGTGG+TGG - chr1.4:3132572-3132591 None:intergenic 45.0%
!! CATCCACCATTGGTTCTAAC+TGG - chr1.4:3136314-3136333 None:intergenic 45.0%
!! GAAGGTGCTTCAAATACTGC+AGG - chr1.4:3134356-3134375 None:intergenic 45.0%
!! TCTCCCTTCCTTTTCTGGAA+AGG - chr1.4:3136680-3136699 None:intergenic 45.0%
!! TGCTATTTCCATGCACAACC+TGG + chr1.4:3135695-3135714 MS.gene062755:intron 45.0%
!! TTGGTTTGGTTCAAGGCTTC+CGG + chr1.4:3133416-3133435 MS.gene062755:CDS 45.0%
!!! TGCAGCTGAAGCATTGCTTT+TGG + chr1.4:3133075-3133094 MS.gene062755:intron 45.0%
AACACTGCACCTGATGGTCA+TGG + chr1.4:3136287-3136306 MS.gene062755:CDS 50.0%
ACACATTGGGAGCAGAAGAG+TGG + chr1.4:3135846-3135865 MS.gene062755:CDS 50.0%
ACATGACTCCCACCCATTTG+AGG - chr1.4:3133160-3133179 None:intergenic 50.0%
ACCAGCAACGGTAAGGATAG+CGG - chr1.4:3134448-3134467 None:intergenic 50.0%
AGCGGCGAAAGCCCAAATAA+CGG - chr1.4:3134430-3134449 None:intergenic 50.0%
AGCTGAAGAAGCTGTTCAGC+TGG - chr1.4:3132617-3132636 None:intergenic 50.0%
AGTCCAACCACACATACCAC+AGG - chr1.4:3134070-3134089 None:intergenic 50.0%
CACACAATCTGCAAGCTGCA+TGG - chr1.4:3134212-3134231 None:intergenic 50.0%
CTAACTGGACCATGACCATC+AGG - chr1.4:3136299-3136318 None:intergenic 50.0%
CTACTCGGTCTCACACACAT+TGG + chr1.4:3135832-3135851 MS.gene062755:CDS 50.0%
GGTCCAGTTAGAACCAATGG+TGG + chr1.4:3136308-3136327 MS.gene062755:CDS 50.0%
GTACCCCACTGAAATGGGTA+TGG - chr1.4:3134900-3134919 None:intergenic 50.0%
GTACCTGTGGTATGTGTGGT+TGG + chr1.4:3134064-3134083 MS.gene062755:CDS 50.0%
GTCATGAACACTGCACCTGA+TGG + chr1.4:3136281-3136300 MS.gene062755:CDS 50.0%
GTGACTTACCCATCCACCAT+TGG - chr1.4:3136324-3136343 None:intergenic 50.0%
GTGGCTGTTTGAGAGAGCTT+AGG + chr1.4:3134622-3134641 MS.gene062755:intron 50.0%
GTGGTATGTGTGGTTGGACT+CGG + chr1.4:3134070-3134089 MS.gene062755:CDS 50.0%
TATCTCCTGCAGCTGCTACT+GGG + chr1.4:3136162-3136181 MS.gene062755:intron 50.0%
TGCTACATACCATGGTGCAC+GGG - chr1.4:3134535-3134554 None:intergenic 50.0%
TGTATGCACCAGCAACGGTA+AGG - chr1.4:3134455-3134474 None:intergenic 50.0%
TGTTCAGCTGGAGTCCAAGT+GGG - chr1.4:3132605-3132624 None:intergenic 50.0%
! GGACCACCACCTCAGAATTT+TGG + chr1.4:3132566-3132585 MS.gene062755:CDS 50.0%
! GGTGGGTTCCTTTCCAGAAA+AGG + chr1.4:3136669-3136688 MS.gene062755:CDS 50.0%
! GTAGCTACATGTGTCGGTGT+CGG + chr1.4:3135120-3135139 MS.gene062755:intron 50.0%
! TCCCACCCATTTGAGGTACA+AGG - chr1.4:3133153-3133172 None:intergenic 50.0%
! TTCTGGAAAGGAACCCACCA+TGG - chr1.4:3136668-3136687 None:intergenic 50.0%
!! AAATTCTGAGGTGGTGGTCC+CGG - chr1.4:3132566-3132585 None:intergenic 50.0%
AGGCTTCCGGTGATTATGGG+TGG + chr1.4:3133429-3133448 MS.gene062755:CDS 55.0%
CATGTGCTCAGCCGAAGCAT+CGG + chr1.4:3135354-3135373 MS.gene062755:CDS 55.0%
CTATCTCCTGCAGCTGCTAC+TGG + chr1.4:3136161-3136180 MS.gene062755:intron 55.0%
CTGTGGACAGAGGACTTCCA+TGG + chr1.4:3136648-3136667 MS.gene062755:CDS 55.0%
CTGTTCAGCTGGAGTCCAAG+TGG - chr1.4:3132606-3132625 None:intergenic 55.0%
GACTTTCAAGGGGTCCCACT+TGG + chr1.4:3132588-3132607 MS.gene062755:CDS 55.0%
GGACAGAGGACTTCCATGGT+GGG + chr1.4:3136652-3136671 MS.gene062755:CDS 55.0%
TCACCTGAAGCCCGATGCTT+CGG - chr1.4:3135368-3135387 None:intergenic 55.0%
TGGACAGAGGACTTCCATGG+TGG + chr1.4:3136651-3136670 MS.gene062755:CDS 55.0%
! ATGTGCTCAGCCGAAGCATC+GGG + chr1.4:3135355-3135374 MS.gene062755:CDS 55.0%
!! ATGGGGGTACCCCACTGAAA+TGG - chr1.4:3134906-3134925 None:intergenic 55.0%
!! TGGGGGTACCCCACTGAAAT+GGG - chr1.4:3134905-3134924 None:intergenic 55.0%
ACCATGGTGCACGGGTCAGA+AGG - chr1.4:3134527-3134546 None:intergenic 60.0%
ACCTTCTGACCCGTGCACCA+TGG + chr1.4:3134523-3134542 MS.gene062755:CDS 60.0%
CCAAGCACCACCGTCAGTTC+AGG + chr1.4:3132532-3132551 MS.gene062755:CDS 60.0%
CCTGAACTGACGGTGGTGCT+TGG - chr1.4:3132535-3132554 None:intergenic 60.0%
CTTCGGCTGAGCACATGTGC+CGG - chr1.4:3135351-3135370 None:intergenic 60.0%
GAACTGACGGTGGTGCTTGG+TGG - chr1.4:3132532-3132551 None:intergenic 60.0%
GAGATCCCAGTAGCAGCTGC+AGG - chr1.4:3136170-3136189 None:intergenic 60.0%
GCCGCTATCCTTACCGTTGC+TGG + chr1.4:3134444-3134463 MS.gene062755:CDS 60.0%
GTACTTTCTTCGCCGCAGCC+AGG + chr1.4:3135304-3135323 MS.gene062755:CDS 60.0%
GTTCGCGAGGGGCTTTCCAA+TGG + chr1.4:3134096-3134115 MS.gene062755:CDS 60.0%
TGCACCAGAAAGCCTGGCTG+CGG - chr1.4:3135319-3135338 None:intergenic 60.0%
TTCTGGTGCAACACCCCCTC+CGG + chr1.4:3135329-3135348 MS.gene062755:CDS 60.0%
! GGCTGCGGCGAAGAAAGTAC+CGG - chr1.4:3135304-3135323 None:intergenic 60.0%
! GGGTGTTGCACCAGAAAGCC+TGG - chr1.4:3135325-3135344 None:intergenic 60.0%
! TGGACTCGGTCTGTTCGCGA+GGG + chr1.4:3134084-3134103 MS.gene062755:CDS 60.0%
! TTGGACTCGGTCTGTTCGCG+AGG + chr1.4:3134083-3134102 MS.gene062755:CDS 60.0%
CTGAGCACATGTGCCGGAGG+GGG - chr1.4:3135345-3135364 None:intergenic 65.0%
GCTGAGCACATGTGCCGGAG+GGG - chr1.4:3135346-3135365 None:intergenic 65.0%
GGCTGAGCACATGTGCCGGA+GGG - chr1.4:3135347-3135366 None:intergenic 65.0%
TTCGCCGCAGCCAGGCTTTC+TGG + chr1.4:3135312-3135331 MS.gene062755:CDS 65.0%
! GGACTCGGTCTGTTCGCGAG+GGG + chr1.4:3134085-3134104 MS.gene062755:CDS 65.0%
! GGTGGCGGTGCCTGAACTGA+CGG - chr1.4:3132545-3132564 None:intergenic 65.0%
! GTCAGTTCAGGCACCGCCAC+CGG + chr1.4:3132544-3132563 MS.gene062755:CDS 65.0%
! TCAGTTCAGGCACCGCCACC+GGG + chr1.4:3132545-3132564 MS.gene062755:CDS 65.0%
!! CAGCCGAAGCATCGGGCTTC+AGG + chr1.4:3135362-3135381 MS.gene062755:CDS 65.0%
!! TTCTGAGGTGGTGGTCCCGG+TGG - chr1.4:3132563-3132582 None:intergenic 65.0%
CGGCTGAGCACATGTGCCGG+AGG - chr1.4:3135348-3135367 None:intergenic 70.0%
GGCGGTGCCTGAACTGACGG+TGG - chr1.4:3132542-3132561 None:intergenic 70.0%
! TGAGGTGGTGGTCCCGGTGG+CGG - chr1.4:3132560-3132579 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 3132509 3136769 3132509 ID=MS.gene062755
chr1.4 mRNA 3132509 3136769 3132509 ID=MS.gene062755.t1;Parent=MS.gene062755
chr1.4 exon 3132509 3132668 3132509 ID=MS.gene062755.t1.exon1;Parent=MS.gene062755.t1
chr1.4 CDS 3132509 3132668 3132509 ID=cds.MS.gene062755.t1;Parent=MS.gene062755.t1
chr1.4 exon 3133080 3133177 3133080 ID=MS.gene062755.t1.exon2;Parent=MS.gene062755.t1
chr1.4 CDS 3133080 3133177 3133080 ID=cds.MS.gene062755.t1;Parent=MS.gene062755.t1
chr1.4 exon 3133351 3133527 3133351 ID=MS.gene062755.t1.exon3;Parent=MS.gene062755.t1
chr1.4 CDS 3133351 3133527 3133351 ID=cds.MS.gene062755.t1;Parent=MS.gene062755.t1
chr1.4 exon 3133803 3133903 3133803 ID=MS.gene062755.t1.exon4;Parent=MS.gene062755.t1
chr1.4 CDS 3133803 3133903 3133803 ID=cds.MS.gene062755.t1;Parent=MS.gene062755.t1
chr1.4 exon 3134042 3134117 3134042 ID=MS.gene062755.t1.exon5;Parent=MS.gene062755.t1
chr1.4 CDS 3134042 3134117 3134042 ID=cds.MS.gene062755.t1;Parent=MS.gene062755.t1
chr1.4 exon 3134217 3134276 3134217 ID=MS.gene062755.t1.exon6;Parent=MS.gene062755.t1
chr1.4 CDS 3134217 3134276 3134217 ID=cds.MS.gene062755.t1;Parent=MS.gene062755.t1
chr1.4 exon 3134360 3134544 3134360 ID=MS.gene062755.t1.exon7;Parent=MS.gene062755.t1
chr1.4 CDS 3134360 3134544 3134360 ID=cds.MS.gene062755.t1;Parent=MS.gene062755.t1
chr1.4 exon 3134887 3134983 3134887 ID=MS.gene062755.t1.exon8;Parent=MS.gene062755.t1
chr1.4 CDS 3134887 3134983 3134887 ID=cds.MS.gene062755.t1;Parent=MS.gene062755.t1
chr1.4 exon 3135297 3135383 3135297 ID=MS.gene062755.t1.exon9;Parent=MS.gene062755.t1
chr1.4 CDS 3135297 3135383 3135297 ID=cds.MS.gene062755.t1;Parent=MS.gene062755.t1
chr1.4 exon 3135476 3135534 3135476 ID=MS.gene062755.t1.exon10;Parent=MS.gene062755.t1
chr1.4 CDS 3135476 3135534 3135476 ID=cds.MS.gene062755.t1;Parent=MS.gene062755.t1
chr1.4 exon 3135819 3135910 3135819 ID=MS.gene062755.t1.exon11;Parent=MS.gene062755.t1
chr1.4 CDS 3135819 3135910 3135819 ID=cds.MS.gene062755.t1;Parent=MS.gene062755.t1
chr1.4 exon 3136004 3136081 3136004 ID=MS.gene062755.t1.exon12;Parent=MS.gene062755.t1
chr1.4 CDS 3136004 3136081 3136004 ID=cds.MS.gene062755.t1;Parent=MS.gene062755.t1
chr1.4 exon 3136174 3136334 3136174 ID=MS.gene062755.t1.exon13;Parent=MS.gene062755.t1
chr1.4 CDS 3136174 3136334 3136174 ID=cds.MS.gene062755.t1;Parent=MS.gene062755.t1
chr1.4 exon 3136551 3136769 3136551 ID=MS.gene062755.t1.exon14;Parent=MS.gene062755.t1
chr1.4 CDS 3136551 3136769 3136551 ID=cds.MS.gene062755.t1;Parent=MS.gene062755.t1
Gene Sequence

>MS.gene062755

ATGGGTCATGACACAGATAACCACCAAGCACCACCGTCAGTTCAGGCACCGCCACCGGGACCACCACCTCAGAATTTTGGACTTTCAAGGGGTCCCACTTGGACTCCAGCTGAACAGCTTCTTCAGCTTCATTATTGCATCCATTCAAATCCTTCATGGCGTTAGTATCTTTTTCAATCTTTCAACTTGATTTGATTCTTCATTTTTTATTTTATTTTTACTTTTTTTGATTCATTTTTTATGCCTTAACTTGTAAAAAAAAATTATGCTTGATGTTAAAAGTAGTTGAGAATCTTATGTCAAAGAGTTGTTGTAATTTTTATTTTTTTAGTTCAGTTTAGTTTATTTGTTGATTATTATTGATTACTTTATGTTACCTTTATTCTAGTTTGATTCTGTATTTTTTAAAAAAAGTTGCTTTGGATTTTGTTTTTGTAATCTTTTGTTAGATTCAGTATGTAAAAGTGAAGTGAAACAAGTTTTGATATTTTTTTTTATTTTTATTTTTTTGGGTTTGAAGTTAAAAAATTCATCTTTTGTTTACAACAATTTTTTATTTTTCATTTTGCAGCTGAAGCATTGCTTTTGGCTTTTCAGCACTACATTGTGATGCTTGGAACAACTGTTCTGATTGCAAGCAACCTTGTACCTCAAATGGGTGGGAGTCATGTAAGTATAAACTGAGATCACTTGATGAAAAAGATTGGTACTTGTTATGTATTTGTGTGATGAATCTGTAATTGTTGTTTTTTGTAACGGCAAATGTTAGTATTGCTAGTTTTTGGTAATGGCAGGGATCGAACGCTCAACGTCCTGATTTTGTTGTTGTTATTGTTTTGTAGCACGATAAGGCTTGTGTGATCCAGACATTGTTGTTTATGTCTGGTATCAACACATTGCTTCAGACTTGGTTTGGTTCAAGGCTTCCGGTGATTATGGGTGGATCACTTGCTTTCTATCTACCGGTGATGTCGATCATAAATGATTACAATGACCAAACTTTCGCATCTGAGAATCAGGTTTGTTTATTTCAAAATGAAAACATATTGTGATTTCGGTTAAGAGTCTCTCATTATATGAAATAAGGTCCGAACATAAGTTTATATGTTTGTAGAGGTGGTTTTAGCCCCAACCCAAATTCTAAAAATTTCAATTTTTGATGTATTTATTTCTTTGTCAACTGAATTGCTACGTGTGGTTTATGCTTGTTTGGTTGTTTGTTAACTGAATTGCTTTGTCCAACATAAAATTGGTGATTCAAATCGCTAATCGATTATGACACTTGCACTTGTAGAGGTTTCGCTACACAATTAGAACAATTCAAGGATCTCTCATTGTTTCTTCTTTTGTCAATATCTTCCTTGGATATAGTAGGACATGGGGAAATTTAACAAAGTAAGTTCATGTCAATCTTCAATGTTAGTTTTATTTCACTATTAGTTAATTATTATGTTTATTAGTTAATATCTTTTGGTTAATTTTTTTCTCTCTTTATCATCTTTTGGTTAATCTTTTTTTCTCTTTCTTTACCAGGTTGTTTAGTCCCATTGTCATTGTACCTGTGGTATGTGTGGTTGGACTCGGTCTGTTCGCGAGGGGCTTTCCAATGGTAAGTATTTGTGCGACGTCACATCCACGAATAAATTACCTACTATAATAAAAGTTTGAAATGGAAAGTTCATAAACTCAGTTATGTTCTTCCATGCAGCTTGCAGATTGTGTGCAGATCGGACTACCTATGCTCCTTCTGCTGATTGTAACACAACAGGTTTTATTTCTAATCCGAAACATTCACTTATGAGTTTTATTCTCTTATACTAACAACAACCTTTTACATTTCCGGTCCTGCAGTATTTGAAGCACCTTCATGCTAAGGCTCATCATATACTTGAGAGGTTTGCTTTACTTATCTGCATTGCCGTTATTTGGGCTTTCGCCGCTATCCTTACCGTTGCTGGTGCATACAATACTTCCAAAGAAAAGACTCAAATAAGTTGTCGCACAGATCGTTCGTACCTTCTGACCCGTGCACCATGGTATGTAGCAAAAGTAGTATATTTAGGGTCTATTTGGATTGACTTATGTCAGCTTAACTACTGACATAAGCACTTGTGTGGCTGTTTGAGAGAGCTTAGGAAAACAGTTTACCTCATGTCCATAAGTTGTTTTCAGCGTATTTCCATAAGCTCTCTAGGATAGCTTATGAAAATAGTTTAAAGCTTATATGAAAACAATTTGTTTTTATTTTATCTCCTAAAAATAGCTTATACATAAGCACTTTTAATTAAACTTTTTTTCCAAACAGGACCTCAATTTAACTGTTCAAGTTCAAATTCTCTTTCTGAAATTTTATGATAACAATTATGTTTTTATTCCAGGATTTATGTTCCATACCCATTTCAGTGGGGTACCCCCATATTCAAAGCTAGTCATGTCTTTGGGATGATGGGAGCAGCACTTGTCACTTCTTTCGAGGTTTAGCAACTATTCCTTATTCTTAGTATTTTTAATTCTACGGATTGTTCTTATAATTTATATGCTATGAAGCGCTGACACATACACTAGATATGACATGTAGAAACTTATAATATAAGAATTAAAGTAATTTAATGTAGCTACATGTGTCGGTGTCGGACACTAAGACATGTTGGACACAAGACACACCTTTGATCTGAAGTGCTACATAGTTTATACGTTCATTCTCAATTTTACAGCTTCATTCTCTGGAAAATGATCTTAATTGCTTTAAGCCTATACTACCATTATTTTAATGAAATTTTGAATGCAGTCAACCGGTACTTTCTTCGCCGCAGCCAGGCTTTCTGGTGCAACACCCCCTCCGGCACATGTGCTCAGCCGAAGCATCGGGCTTCAGGTGAAGTTTAATCATCTCGCCATTTGAAGAATTAACTTAATTATTCTCTTACATTACAAAATCTTGATGTCCTTGTAACTTTTGTGATATAGGGCATTAGCATGCTGATTGAAGGCATTTGTGGCTCTATTGTTGGTACTACAGCATCTGTGTAAGAAAGCAATATTTTAACAACTTTTGTTTTGTTTATGTTTAGTGTTCTGAGTAGGAGTGAACATGGAAAGGGTTATAGGTGGAAGGAATAAAATTTAATCGTACCTAGTGTCTAGTTATCCCATTGGCAAATTCACATTTTTTGTGCCATACTCCACTGCTATTTCCATGCACAACCTGGGTTTTATTTGGTTAAATATTGATTATAGACATGGATCCATTGATTATTTGTTAAGAATTCTATATACGTGATAATCTCACTAATCTGTTTGATAATTGTAGTGAAAATGTCGGTCTACTCGGTCTCACACACATTGGGAGCAGAAGAGTGGTGCAAATGTCATGTGGTTTCATGATTTTATGCTCTATTTTTGGTACAATATATTACACTTCAATTCTTGTTTGGAGAGTTCCATTGCACTTAAATGTTACTTATGTAATTAATGATTTTTCCATGTCTATTTCAGGTAAATTCGGAGCCTTTTTCGCATCAATTCCTCTCCCAATATTCGCTGCTATATACTGTGTTTTATTCGGCATTGTCGGTAGGTGTTGCCACCATTACATGCACATTAAATTATTATAATTTTGACATGTAGATGCATACCTTATACAATTATCTCTCTATCTCCTGCAGCTGCTACTGGGATCTCATTTATACAGTTTGCAAATAACAATTCCATAAGGAATATCTATGTTTTCGGCTTAACCTTGTTTCTCGGGATCTCAATTCCACAATATTTTGTCATGAACACTGCACCTGATGGTCATGGTCCAGTTAGAACCAATGGTGGATGGGTAAGTCACTTATTAAGTCTTTAAAACATTAAACGATTTTATTCTTATACTACCTCAGTCCCTTTTTACAAGTCCCTTTTGTCATTTTCATATATGTTAAGAAAAGTAGCCGGCGTATTTATGTGTCTATTTTATGTATGAATGTTGCTAAAATACCGTTTTGGTTGATTTCGTATATCTGATTTGTGTACCTTGTCTTGTCTTGTGTGGCAACAGTTTAATGACATATTGAACACCATATTCTCATCTCCACCAACTGTGGCAATAATAGTTGGGACAGTTCTTGACAACACACTTGAAGCCAAACAAACAGCTGTGGACAGAGGACTTCCATGGTGGGTTCCTTTCCAGAAAAGGAAGGGAGATGTTAGAAATGATGAATTTTATCGCTTTCCTCTCCGTTTGTCTGAATATATTCCTAGTAGATTTCTCTAG

Protein sequence

>MS.gene062755.t1

MGHDTDNHQAPPSVQAPPPGPPPQNFGLSRGPTWTPAEQLLQLHYCIHSNPSWPEALLLAFQHYIVMLGTTVLIASNLVPQMGGSHHDKACVIQTLLFMSGINTLLQTWFGSRLPVIMGGSLAFYLPVMSIINDYNDQTFASENQRFRYTIRTIQGSLIVSSFVNIFLGYSRTWGNLTKLFSPIVIVPVVCVVGLGLFARGFPMLADCVQIGLPMLLLLIVTQQYLKHLHAKAHHILERFALLICIAVIWAFAAILTVAGAYNTSKEKTQISCRTDRSYLLTRAPWIYVPYPFQWGTPIFKASHVFGMMGAALVTSFESTGTFFAAARLSGATPPPAHVLSRSIGLQGISMLIEGICGSIVGTTASVENVGLLGLTHIGSRRVVQMSCGFMILCSIFGKFGAFFASIPLPIFAAIYCVLFGIVAATGISFIQFANNNSIRNIYVFGLTLFLGISIPQYFVMNTAPDGHGPVRTNGGWFNDILNTIFSSPPTVAIIVGTVLDNTLEAKQTAVDRGLPWWVPFQKRKGDVRNDEFYRFPLRLSEYIPSRFL